Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756510 | sp|Q9SZE8|LBD39_ARATH | 50.806 | 248 | 80 | 9 | 1 | 214 | 1 | 240 | 6.83e-67 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756510 | G7K3V2 | 88.312 | 231 | 10 | 1 | 1 | 214 | 1 | 231 | 8.39e-143 | 407 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0756510 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714100 | Msa0756510 | 0.889689 | 1.933835e-73 | -8.615850e-47 |
| Msa0756510 | Msa0797890 | 0.892179 | 2.014481e-74 | -8.615850e-47 |
| Msa0756510 | Msa0835450 | 0.956040 | 7.506716e-114 | -8.615850e-47 |
| Msa0756510 | Msa1221480 | 0.860374 | 2.159547e-63 | -8.615850e-47 |
| Msa0756510 | Msa1222060 | 0.830135 | 3.481840e-55 | -8.615850e-47 |
| Msa0756510 | Msa1264890 | 0.830240 | 3.283667e-55 | -8.615850e-47 |
| Msa0756510 | Msa1303200 | 0.865425 | 5.962638e-65 | -8.615850e-47 |
| Msa0756510 | Msa1388170 | 0.891488 | 3.796022e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756510 | MtrunA17_Chr5g0401401 | 88.312 | 231 | 10 | 1 | 1 | 214 | 1 | 231 | 1.62e-146 | 407 |
| Msa0756510 | MtrunA17_Chr4g0053911 | 63.900 | 241 | 52 | 7 | 1 | 214 | 1 | 233 | 5.71e-95 | 276 |
| Msa0756510 | MtrunA17_Chr1g0207471 | 50.000 | 152 | 54 | 4 | 1 | 130 | 1 | 152 | 3.75e-44 | 146 |
| Msa0756510 | MtrunA17_Chr7g0215281 | 57.273 | 110 | 30 | 1 | 1 | 93 | 3 | 112 | 1.12e-42 | 145 |
| Msa0756510 | MtrunA17_Chr6g0457431 | 47.826 | 138 | 45 | 2 | 1 | 111 | 3 | 140 | 3.44e-42 | 140 |
| Msa0756510 | MtrunA17_Chr6g0469271 | 43.195 | 169 | 68 | 5 | 1 | 147 | 3 | 165 | 2.14e-39 | 135 |
| Msa0756510 | MtrunA17_Chr6g0470651 | 44.361 | 133 | 53 | 2 | 1 | 114 | 3 | 133 | 4.14e-35 | 124 |
| Msa0756510 | MtrunA17_Chr1g0209841 | 42.038 | 157 | 79 | 4 | 1 | 148 | 3 | 156 | 8.01e-34 | 120 |
| Msa0756510 | MtrunA17_Chr6g0470631 | 42.857 | 133 | 55 | 2 | 1 | 114 | 3 | 133 | 1.42e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756510 | AT4G37540.1 | 50.806 | 248 | 80 | 9 | 1 | 214 | 1 | 240 | 6.95e-68 | 208 |
| Msa0756510 | AT3G49940.1 | 51.562 | 256 | 73 | 10 | 1 | 214 | 1 | 247 | 1.56e-67 | 207 |
| Msa0756510 | AT5G67420.2 | 47.451 | 255 | 88 | 7 | 1 | 214 | 1 | 250 | 6.50e-61 | 191 |
| Msa0756510 | AT5G67420.1 | 47.451 | 255 | 88 | 7 | 1 | 214 | 1 | 250 | 6.50e-61 | 191 |
| Msa0756510 | AT1G67100.1 | 58.182 | 110 | 29 | 1 | 1 | 93 | 3 | 112 | 2.92e-42 | 142 |
| Msa0756510 | AT3G02550.1 | 56.364 | 110 | 31 | 1 | 1 | 93 | 3 | 112 | 5.71e-40 | 137 |
| Msa0756510 | AT1G68510.1 | 53.097 | 113 | 34 | 2 | 1 | 94 | 3 | 115 | 5.36e-37 | 129 |
Find 71 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATGAACCGGACTTTC+TGG | 0.160468 | 5_2:+10832233 | None:intergenic |
| GAAACTCCGGTAAGGGTTTA+AGG | 0.160922 | 5_2:+10832344 | None:intergenic |
| ACGCGTTGACCAACGGTTTC+CGG | 0.249914 | 5_2:-10832126 | Msa0756510:CDS |
| ATTAAAATTCTCAAACAAAA+AGG | 0.262922 | 5_2:+10831978 | None:intergenic |
| GTGGCATGACCTTGAGCTTC+AGG | 0.279564 | 5_2:+10832819 | None:intergenic |
| ACTCACTACAACCCTTTCTA+AGG | 0.331551 | 5_2:+10832880 | None:intergenic |
| GAATTCATCGACGGTGTTCC+CGG | 0.351208 | 5_2:+10832088 | None:intergenic |
| GGACTTTCTGGTTCGGATCT+CGG | 0.355586 | 5_2:+10832245 | None:intergenic |
| AGTCCGACAGCACCGTTAAC+GGG | 0.370602 | 5_2:+10832430 | None:intergenic |
| ACGCGTTCTGTGGCGTTAAC+CGG | 0.381628 | 5_2:+10832143 | None:intergenic |
| CGGAACCCTTAAACCCTTAC+CGG | 0.384595 | 5_2:-10832350 | Msa0756510:CDS |
| AAAGTCCGGTTCATGAGTTC+TGG | 0.390533 | 5_2:-10832229 | Msa0756510:CDS |
| TATTACGCCCTTGTATTCAA+TGG | 0.394479 | 5_2:-10832851 | Msa0756510:CDS |
| AAGTCCGACAGCACCGTTAA+CGG | 0.413291 | 5_2:+10832429 | None:intergenic |
| AAACTCCGGTAAGGGTTTAA+GGG | 0.432686 | 5_2:+10832345 | None:intergenic |
| AAACCCTTACCGGAGTTTCT+CGG | 0.442329 | 5_2:-10832340 | Msa0756510:CDS |
| TGGTGAAGTTATGAAGCTTC+CGG | 0.451882 | 5_2:-10832185 | Msa0756510:CDS |
| CGGTTGCCGTGTCCTTAGAA+AGG | 0.456637 | 5_2:-10832892 | Msa0756510:CDS |
| TACCACCAGAACTCATGAAC+CGG | 0.478203 | 5_2:+10832224 | None:intergenic |
| ATGAACCGGACTTTCTGGTT+CGG | 0.483553 | 5_2:+10832238 | None:intergenic |
| AGCACCGTTAACGGGGTTCA+CGG | 0.485215 | 5_2:+10832438 | None:intergenic |
| TGTGACGACGGTGACGTGCT+TGG | 0.492180 | 5_2:-10832056 | Msa0756510:CDS |
| TGGCATGACCTTGAGCTTCA+GGG | 0.492713 | 5_2:+10832820 | None:intergenic |
| CGGAGGGAAATTCGCCGGCC+GGG | 0.499369 | 5_2:-10832106 | Msa0756510:CDS |
| AGAACCGTGAACCCCGTTAA+CGG | 0.510533 | 5_2:-10832442 | Msa0756510:CDS |
| CCGGAGGGAAATTCGCCGGC+CGG | 0.514516 | 5_2:-10832107 | Msa0756510:CDS |
| GTGTCAAGCGGCGGTTGAAA+CGG | 0.518728 | 5_2:-10832383 | Msa0756510:CDS |
| GGTTGCCGTGTCCTTAGAAA+GGG | 0.520856 | 5_2:-10832891 | Msa0756510:CDS |
| GCGTCTAAACCGAGAAACTC+CGG | 0.534500 | 5_2:+10832331 | None:intergenic |
| GAGATCCGAACCAGAAAGTC+CGG | 0.539752 | 5_2:-10832243 | Msa0756510:CDS |
| TCATCGACGGTGTTCCCGGC+CGG | 0.542141 | 5_2:+10832092 | None:intergenic |
| ACGGTGACGTGCTTGGAAAG+TGG | 0.543942 | 5_2:-10832049 | Msa0756510:CDS |
| GTATCGATCCATTGAATACA+AGG | 0.548656 | 5_2:+10832843 | None:intergenic |
| CGGTGACGTGCTTGGAAAGT+GGG | 0.551329 | 5_2:-10832048 | Msa0756510:CDS |
| TTCTGAGGAATCTGTGACGA+CGG | 0.564218 | 5_2:-10832068 | Msa0756510:CDS |
| TGCTTGGAAAGTGGGATCGG+AGG | 0.566383 | 5_2:-10832040 | Msa0756510:CDS |
| AAACCGAGAAACTCCGGTAA+GGG | 0.570584 | 5_2:+10832337 | None:intergenic |
| TAAACCGAGAAACTCCGGTA+AGG | 0.571879 | 5_2:+10832336 | None:intergenic |
| CCGTTGGTCAACGCGTTCTG+TGG | 0.575430 | 5_2:+10832133 | None:intergenic |
| GTTTCCGGAGGGAAATTCGC+CGG | 0.577846 | 5_2:-10832111 | Msa0756510:CDS |
| AATTTCCCTCCGGAAACCGT+TGG | 0.583258 | 5_2:+10832117 | None:intergenic |
| ACCGTTGATGACTCATCTGA+AGG | 0.585962 | 5_2:-10832298 | Msa0756510:CDS |
| ACGTGCTTGGAAAGTGGGAT+CGG | 0.586938 | 5_2:-10832043 | Msa0756510:CDS |
| CCGGCCGGCGAATTTCCCTC+CGG | 0.587093 | 5_2:+10832107 | None:intergenic |
| AACCCCGTTAACGGTGCTGT+CGG | 0.588780 | 5_2:-10832433 | Msa0756510:CDS |
| AGATTAAGATCAGTCGTCGC+CGG | 0.593377 | 5_2:+10832166 | None:intergenic |
| TCCTTCAGATGAGTCATCAA+CGG | 0.596231 | 5_2:+10832297 | None:intergenic |
| CGACGACTGATCTTAATCTC+CGG | 0.598907 | 5_2:-10832162 | Msa0756510:CDS |
| AAGTCACGTGCAACGACGCG+CGG | 0.599047 | 5_2:-10832273 | Msa0756510:CDS |
| CGTTGACCAACGGTTTCCGG+AGG | 0.601993 | 5_2:-10832123 | Msa0756510:CDS |
| CCACAGAACGCGTTGACCAA+CGG | 0.603462 | 5_2:-10832133 | Msa0756510:CDS |
| AGGGTTTAAGGGTTCCGCCA+CGG | 0.607346 | 5_2:+10832356 | None:intergenic |
| GGCATGACCTTGAGCTTCAG+GGG | 0.607961 | 5_2:+10832821 | None:intergenic |
| TACAACCCTTTCTAAGGACA+CGG | 0.609661 | 5_2:+10832886 | None:intergenic |
| ATCGATACCCCTGAAGCTCA+AGG | 0.611816 | 5_2:-10832828 | Msa0756510:CDS |
| CAACTAGGTATGAGTTGCAA+CGG | 0.621586 | 5_2:-10832912 | None:intergenic |
| GTCCGGTTCATGAGTTCTGG+TGG | 0.622596 | 5_2:-10832226 | Msa0756510:CDS |
| GTCCGACAGCACCGTTAACG+GGG | 0.636214 | 5_2:+10832431 | None:intergenic |
| GTTGAAACGGTGCTCCGTGG+CGG | 0.644097 | 5_2:-10832370 | Msa0756510:CDS |
| AAACTGGCACGTGTGTCAAG+CGG | 0.645348 | 5_2:-10832395 | Msa0756510:CDS |
| GTTGACCAACGGTTTCCGGA+GGG | 0.646523 | 5_2:-10832122 | Msa0756510:CDS |
| CTGGCACGTGTGTCAAGCGG+CGG | 0.654365 | 5_2:-10832392 | Msa0756510:CDS |
| TTCAGATGAGTCATCAACGG+TGG | 0.656087 | 5_2:+10832300 | None:intergenic |
| GCGGTTGAAACGGTGCTCCG+TGG | 0.657002 | 5_2:-10832373 | Msa0756510:CDS |
| TCTTTGTTGTTTGAAGCGTG+TGG | 0.669278 | 5_2:-10832466 | Msa0756510:CDS |
| GATTCCTCAGAATTCATCGA+CGG | 0.685600 | 5_2:+10832079 | None:intergenic |
| GGTAAACGCAAGCGATCATG+TGG | 0.692573 | 5_2:-10832205 | Msa0756510:CDS |
| TATCGATCCATTGAATACAA+GGG | 0.699979 | 5_2:+10832844 | None:intergenic |
| AACACCGTCGATGAATTCTG+AGG | 0.704407 | 5_2:-10832083 | Msa0756510:CDS |
| AAACTTGGCTACAAAGACAG+TGG | 0.714204 | 5_2:+10832800 | None:intergenic |
| GGAGATAACTACGTTCACGA+CGG | 0.740228 | 5_2:-10832019 | Msa0756510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAGATAAAGATTATTTACC+AGG | + | chr5_2:10832276-10832295 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | - | chr5_2:10832376-10832395 | Msa0756510:CDS | 25.0% |
| ! | GAAGATAAAGATTATTTACC+AGG | + | chr5_2:10832276-10832295 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | - | chr5_2:10832376-10832395 | Msa0756510:CDS | 25.0% |
| TATCGATCCATTGAATACAA+GGG | + | chr5_2:10832055-10832074 | None:intergenic | 30.0% | |
| CGTTAGAAATGAAAGACATA+AGG | + | chr5_2:10832136-10832155 | None:intergenic | 30.0% | |
| TATCGATCCATTGAATACAA+GGG | + | chr5_2:10832055-10832074 | None:intergenic | 30.0% | |
| CGTTAGAAATGAAAGACATA+AGG | + | chr5_2:10832136-10832155 | None:intergenic | 30.0% | |
| TATTACGCCCTTGTATTCAA+TGG | - | chr5_2:10832045-10832064 | Msa0756510:CDS | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | + | chr5_2:10832056-10832075 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | - | chr5_2:10832101-10832120 | Msa0756510:CDS | 35.0% |
| ! | TTAGAGTGAAAGTGTAACTG+TGG | + | chr5_2:10832310-10832329 | None:intergenic | 35.0% |
| CAAAAAGGTTGAGAACTTTG+CGG | + | chr5_2:10832906-10832925 | None:intergenic | 35.0% | |
| TATTACGCCCTTGTATTCAA+TGG | - | chr5_2:10832045-10832064 | Msa0756510:CDS | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | + | chr5_2:10832056-10832075 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | - | chr5_2:10832101-10832120 | Msa0756510:CDS | 35.0% |
| ! | TTAGAGTGAAAGTGTAACTG+TGG | + | chr5_2:10832310-10832329 | None:intergenic | 35.0% |
| CAAAAAGGTTGAGAACTTTG+CGG | + | chr5_2:10832906-10832925 | None:intergenic | 35.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | + | chr5_2:10832013-10832032 | None:intergenic | 40.0% |
| ACTCACTACAACCCTTTCTA+AGG | + | chr5_2:10832019-10832038 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | + | chr5_2:10832099-10832118 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | + | chr5_2:10832127-10832146 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | - | chr5_2:10832430-10832449 | Msa0756510:CDS | 40.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | + | chr5_2:10832554-10832573 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | + | chr5_2:10832602-10832621 | None:intergenic | 40.0% | |
| TGGTGAAGTTATGAAGCTTC+CGG | - | chr5_2:10832711-10832730 | Msa0756510:intron | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | + | chr5_2:10832820-10832839 | None:intergenic | 40.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | + | chr5_2:10832013-10832032 | None:intergenic | 40.0% |
| ACTCACTACAACCCTTTCTA+AGG | + | chr5_2:10832019-10832038 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | + | chr5_2:10832099-10832118 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | + | chr5_2:10832127-10832146 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | - | chr5_2:10832430-10832449 | Msa0756510:CDS | 40.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | + | chr5_2:10832554-10832573 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | + | chr5_2:10832602-10832621 | None:intergenic | 40.0% | |
| TGGTGAAGTTATGAAGCTTC+CGG | - | chr5_2:10832711-10832730 | Msa0756510:intron | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | + | chr5_2:10832820-10832839 | None:intergenic | 40.0% | |
| ! | GACTTTTGTGGACAGGAAAC+TGG | - | chr5_2:10832485-10832504 | Msa0756510:intron | 45.0% |
| GAAACTCCGGTAAGGGTTTA+AGG | + | chr5_2:10832555-10832574 | None:intergenic | 45.0% | |
| AAACCCTTACCGGAGTTTCT+CGG | - | chr5_2:10832556-10832575 | Msa0756510:intron | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | + | chr5_2:10832562-10832581 | None:intergenic | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | + | chr5_2:10832563-10832582 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | + | chr5_2:10832599-10832618 | None:intergenic | 45.0% | |
| !! | ACCGTTGATGACTCATCTGA+AGG | - | chr5_2:10832598-10832617 | Msa0756510:intron | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | + | chr5_2:10832661-10832680 | None:intergenic | 45.0% |
| AACTCATGAACCGGACTTTC+TGG | + | chr5_2:10832666-10832685 | None:intergenic | 45.0% | |
| AAAGTCCGGTTCATGAGTTC+TGG | - | chr5_2:10832667-10832686 | Msa0756510:intron | 45.0% | |
| TACCACCAGAACTCATGAAC+CGG | + | chr5_2:10832675-10832694 | None:intergenic | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | + | chr5_2:10832733-10832752 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | - | chr5_2:10832734-10832753 | Msa0756510:intron | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | - | chr5_2:10832813-10832832 | Msa0756510:CDS | 45.0% | |
| ! | TTCTGAGGAATCTGTGACGA+CGG | - | chr5_2:10832828-10832847 | Msa0756510:CDS | 45.0% |
| GGAGATAACTACGTTCACGA+CGG | - | chr5_2:10832877-10832896 | Msa0756510:CDS | 45.0% | |
| ! | GACTTTTGTGGACAGGAAAC+TGG | - | chr5_2:10832485-10832504 | Msa0756510:intron | 45.0% |
| GAAACTCCGGTAAGGGTTTA+AGG | + | chr5_2:10832555-10832574 | None:intergenic | 45.0% | |
| AAACCCTTACCGGAGTTTCT+CGG | - | chr5_2:10832556-10832575 | Msa0756510:intron | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | + | chr5_2:10832562-10832581 | None:intergenic | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | + | chr5_2:10832563-10832582 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | + | chr5_2:10832599-10832618 | None:intergenic | 45.0% | |
| !! | ACCGTTGATGACTCATCTGA+AGG | - | chr5_2:10832598-10832617 | Msa0756510:intron | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | + | chr5_2:10832661-10832680 | None:intergenic | 45.0% |
| AACTCATGAACCGGACTTTC+TGG | + | chr5_2:10832666-10832685 | None:intergenic | 45.0% | |
| AAAGTCCGGTTCATGAGTTC+TGG | - | chr5_2:10832667-10832686 | Msa0756510:intron | 45.0% | |
| TACCACCAGAACTCATGAAC+CGG | + | chr5_2:10832675-10832694 | None:intergenic | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | + | chr5_2:10832733-10832752 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | - | chr5_2:10832734-10832753 | Msa0756510:intron | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | - | chr5_2:10832813-10832832 | Msa0756510:CDS | 45.0% | |
| ! | TTCTGAGGAATCTGTGACGA+CGG | - | chr5_2:10832828-10832847 | Msa0756510:CDS | 45.0% |
| GGAGATAACTACGTTCACGA+CGG | - | chr5_2:10832877-10832896 | Msa0756510:CDS | 45.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | - | chr5_2:10832005-10832024 | Msa0756510:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | - | chr5_2:10832068-10832087 | Msa0756510:CDS | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | + | chr5_2:10832079-10832098 | None:intergenic | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | - | chr5_2:10832454-10832473 | Msa0756510:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | + | chr5_2:10832470-10832489 | None:intergenic | 50.0% | |
| AAACTGGCACGTGTGTCAAG+CGG | - | chr5_2:10832501-10832520 | Msa0756510:intron | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | - | chr5_2:10832546-10832565 | Msa0756510:intron | 50.0% | |
| GCGTCTAAACCGAGAAACTC+CGG | + | chr5_2:10832568-10832587 | None:intergenic | 50.0% | |
| !! | GGACTTTCTGGTTCGGATCT+CGG | + | chr5_2:10832654-10832673 | None:intergenic | 50.0% |
| GAGATCCGAACCAGAAAGTC+CGG | - | chr5_2:10832653-10832672 | Msa0756510:intron | 50.0% | |
| GGTAAACGCAAGCGATCATG+TGG | - | chr5_2:10832691-10832710 | Msa0756510:intron | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | + | chr5_2:10832782-10832801 | None:intergenic | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | + | chr5_2:10832811-10832830 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+CGG | - | chr5_2:10832853-10832872 | Msa0756510:CDS | 50.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | - | chr5_2:10832005-10832024 | Msa0756510:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | - | chr5_2:10832068-10832087 | Msa0756510:CDS | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | + | chr5_2:10832079-10832098 | None:intergenic | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | - | chr5_2:10832454-10832473 | Msa0756510:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | + | chr5_2:10832470-10832489 | None:intergenic | 50.0% | |
| AAACTGGCACGTGTGTCAAG+CGG | - | chr5_2:10832501-10832520 | Msa0756510:intron | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | - | chr5_2:10832546-10832565 | Msa0756510:intron | 50.0% | |
| GCGTCTAAACCGAGAAACTC+CGG | + | chr5_2:10832568-10832587 | None:intergenic | 50.0% | |
| !! | GGACTTTCTGGTTCGGATCT+CGG | + | chr5_2:10832654-10832673 | None:intergenic | 50.0% |
| GAGATCCGAACCAGAAAGTC+CGG | - | chr5_2:10832653-10832672 | Msa0756510:intron | 50.0% | |
| GGTAAACGCAAGCGATCATG+TGG | - | chr5_2:10832691-10832710 | Msa0756510:intron | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | + | chr5_2:10832782-10832801 | None:intergenic | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | + | chr5_2:10832811-10832830 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+CGG | - | chr5_2:10832853-10832872 | Msa0756510:CDS | 50.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | - | chr5_2:10832004-10832023 | Msa0756510:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | + | chr5_2:10832078-10832097 | None:intergenic | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | + | chr5_2:10832080-10832099 | None:intergenic | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | + | chr5_2:10832114-10832133 | None:intergenic | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | + | chr5_2:10832461-10832480 | None:intergenic | 55.0% | |
| !! | AACCCCGTTAACGGTGCTGT+CGG | - | chr5_2:10832463-10832482 | Msa0756510:CDS | 55.0% |
| AGTCCGACAGCACCGTTAAC+GGG | + | chr5_2:10832469-10832488 | None:intergenic | 55.0% | |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | - | chr5_2:10832473-10832492 | Msa0756510:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | - | chr5_2:10832478-10832497 | Msa0756510:CDS | 55.0% |
| GTGTCAAGCGGCGGTTGAAA+CGG | - | chr5_2:10832513-10832532 | Msa0756510:intron | 55.0% | |
| AGGGTTTAAGGGTTCCGCCA+CGG | + | chr5_2:10832543-10832562 | None:intergenic | 55.0% | |
| ! | GTCCGGTTCATGAGTTCTGG+TGG | - | chr5_2:10832670-10832689 | Msa0756510:intron | 55.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | + | chr5_2:10832756-10832775 | None:intergenic | 55.0% | |
| ! | CCACAGAACGCGTTGACCAA+CGG | - | chr5_2:10832763-10832782 | Msa0756510:intron | 55.0% |
| ! | ACGCGTTGACCAACGGTTTC+CGG | - | chr5_2:10832770-10832789 | Msa0756510:intron | 55.0% |
| GTTGACCAACGGTTTCCGGA+GGG | - | chr5_2:10832774-10832793 | Msa0756510:intron | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | - | chr5_2:10832785-10832804 | Msa0756510:intron | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | - | chr5_2:10832847-10832866 | Msa0756510:CDS | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | - | chr5_2:10832848-10832867 | Msa0756510:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATCGG+AGG | - | chr5_2:10832856-10832875 | Msa0756510:CDS | 55.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | - | chr5_2:10832004-10832023 | Msa0756510:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | + | chr5_2:10832078-10832097 | None:intergenic | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | + | chr5_2:10832080-10832099 | None:intergenic | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | + | chr5_2:10832114-10832133 | None:intergenic | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | + | chr5_2:10832461-10832480 | None:intergenic | 55.0% | |
| !! | AACCCCGTTAACGGTGCTGT+CGG | - | chr5_2:10832463-10832482 | Msa0756510:CDS | 55.0% |
| AGTCCGACAGCACCGTTAAC+GGG | + | chr5_2:10832469-10832488 | None:intergenic | 55.0% | |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | - | chr5_2:10832473-10832492 | Msa0756510:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | - | chr5_2:10832478-10832497 | Msa0756510:CDS | 55.0% |
| GTGTCAAGCGGCGGTTGAAA+CGG | - | chr5_2:10832513-10832532 | Msa0756510:intron | 55.0% | |
| AGGGTTTAAGGGTTCCGCCA+CGG | + | chr5_2:10832543-10832562 | None:intergenic | 55.0% | |
| ! | GTCCGGTTCATGAGTTCTGG+TGG | - | chr5_2:10832670-10832689 | Msa0756510:intron | 55.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | + | chr5_2:10832756-10832775 | None:intergenic | 55.0% | |
| ! | CCACAGAACGCGTTGACCAA+CGG | - | chr5_2:10832763-10832782 | Msa0756510:intron | 55.0% |
| ! | ACGCGTTGACCAACGGTTTC+CGG | - | chr5_2:10832770-10832789 | Msa0756510:intron | 55.0% |
| GTTGACCAACGGTTTCCGGA+GGG | - | chr5_2:10832774-10832793 | Msa0756510:intron | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | - | chr5_2:10832785-10832804 | Msa0756510:intron | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | - | chr5_2:10832847-10832866 | Msa0756510:CDS | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | - | chr5_2:10832848-10832867 | Msa0756510:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATCGG+AGG | - | chr5_2:10832856-10832875 | Msa0756510:CDS | 55.0% | |
| GTCCGACAGCACCGTTAACG+GGG | + | chr5_2:10832468-10832487 | None:intergenic | 60.0% | |
| GTTGAAACGGTGCTCCGTGG+CGG | - | chr5_2:10832526-10832545 | Msa0756510:intron | 60.0% | |
| AAGTCACGTGCAACGACGCG+CGG | - | chr5_2:10832623-10832642 | Msa0756510:intron | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | + | chr5_2:10832766-10832785 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | - | chr5_2:10832773-10832792 | Msa0756510:intron | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | - | chr5_2:10832840-10832859 | Msa0756510:CDS | 60.0% | |
| GTCCGACAGCACCGTTAACG+GGG | + | chr5_2:10832468-10832487 | None:intergenic | 60.0% | |
| GTTGAAACGGTGCTCCGTGG+CGG | - | chr5_2:10832526-10832545 | Msa0756510:intron | 60.0% | |
| AAGTCACGTGCAACGACGCG+CGG | - | chr5_2:10832623-10832642 | Msa0756510:intron | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | + | chr5_2:10832766-10832785 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | - | chr5_2:10832773-10832792 | Msa0756510:intron | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | - | chr5_2:10832840-10832859 | Msa0756510:CDS | 60.0% | |
| CTGGCACGTGTGTCAAGCGG+CGG | - | chr5_2:10832504-10832523 | Msa0756510:intron | 65.0% | |
| GCGGTTGAAACGGTGCTCCG+TGG | - | chr5_2:10832523-10832542 | Msa0756510:intron | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | + | chr5_2:10832807-10832826 | None:intergenic | 65.0% | |
| CTGGCACGTGTGTCAAGCGG+CGG | - | chr5_2:10832504-10832523 | Msa0756510:intron | 65.0% | |
| GCGGTTGAAACGGTGCTCCG+TGG | - | chr5_2:10832523-10832542 | Msa0756510:intron | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | + | chr5_2:10832807-10832826 | None:intergenic | 65.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | + | chr5_2:10832792-10832811 | None:intergenic | 70.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | - | chr5_2:10832789-10832808 | Msa0756510:intron | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | - | chr5_2:10832790-10832809 | Msa0756510:intron | 70.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | + | chr5_2:10832792-10832811 | None:intergenic | 70.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | - | chr5_2:10832789-10832808 | Msa0756510:intron | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | - | chr5_2:10832790-10832809 | Msa0756510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10831991 | 10832927 | 10831991 | ID=Msa0756510;Name=Msa0756510 |
| chr5_2 | mRNA | 10831991 | 10832927 | 10831991 | ID=Msa0756510-mRNA-1;Parent=Msa0756510;Name=Msa0756510-mRNA-1;_AED=0.05;_eAED=0.07;_QI=2|0|0|1|0|0|2|0|214 |
| chr5_2 | exon | 10832793 | 10832927 | 10832793 | ID=Msa0756510-mRNA-1:exon:4923;Parent=Msa0756510-mRNA-1 |
| chr5_2 | exon | 10831991 | 10832499 | 10831991 | ID=Msa0756510-mRNA-1:exon:4922;Parent=Msa0756510-mRNA-1 |
| chr5_2 | five_prime_UTR | 10832926 | 10832927 | 10832926 | ID=Msa0756510-mRNA-1:five_prime_utr;Parent=Msa0756510-mRNA-1 |
| chr5_2 | CDS | 10832793 | 10832925 | 10832793 | ID=Msa0756510-mRNA-1:cds;Parent=Msa0756510-mRNA-1 |
| chr5_2 | CDS | 10831991 | 10832499 | 10831991 | ID=Msa0756510-mRNA-1:cds;Parent=Msa0756510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
