Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756690 | sp|Q9SLN1|FPP7_ARATH | 33.681 | 671 | 327 | 21 | 251 | 880 | 299 | 892 | 1.89e-79 | 279 |
| Msa0756690 | sp|Q9SLN1|FPP7_ARATH | 37.692 | 260 | 108 | 4 | 1 | 260 | 1 | 206 | 6.76e-37 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756690 | G7K5B5 | 90.056 | 885 | 52 | 2 | 1 | 885 | 1 | 849 | 0.0 | 1608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa0756690 | 0.820345 | 7.204112e-53 | -8.615850e-47 |
| Msa0030310 | Msa0756690 | 0.816273 | 6.019254e-52 | -8.615850e-47 |
| Msa0032370 | Msa0756690 | 0.808899 | 2.468361e-50 | -8.615850e-47 |
| Msa0756690 | Msa0836130 | 0.893605 | 5.380208e-75 | -8.615850e-47 |
| Msa0756690 | Msa1044340 | 0.809358 | 1.968417e-50 | -8.615850e-47 |
| Msa0172350 | Msa0756690 | 0.802963 | 4.372322e-49 | -8.615850e-47 |
| Msa0472380 | Msa0756690 | 0.804602 | 1.996498e-49 | -8.615850e-47 |
| Msa0267760 | Msa0756690 | 0.803219 | 3.869112e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756690 | MtrunA17_Chr5g0401911 | 90.056 | 885 | 52 | 2 | 1 | 885 | 1 | 849 | 0.0 | 1608 |
| Msa0756690 | MtrunA17_Chr4g0053121 | 54.212 | 273 | 81 | 3 | 1 | 272 | 1 | 230 | 4.99e-72 | 257 |
| Msa0756690 | MtrunA17_Chr4g0044561 | 29.161 | 727 | 373 | 21 | 254 | 878 | 309 | 995 | 5.43e-61 | 224 |
| Msa0756690 | MtrunA17_Chr4g0044561 | 27.645 | 293 | 138 | 6 | 1 | 282 | 1 | 230 | 7.84e-16 | 82.4 |
| Msa0756690 | MtrunA17_Chr3g0142411 | 33.333 | 225 | 115 | 1 | 43 | 267 | 90 | 279 | 1.29e-27 | 120 |
| Msa0756690 | MtrunA17_Chr8g0384881 | 29.787 | 423 | 182 | 11 | 1 | 374 | 1 | 357 | 1.65e-27 | 119 |
| Msa0756690 | MtrunA17_Chr1g0156371 | 29.730 | 296 | 143 | 5 | 1 | 267 | 1 | 260 | 9.81e-25 | 111 |
| Msa0756690 | MtrunA17_Chr1g0159951 | 29.692 | 357 | 153 | 8 | 50 | 374 | 147 | 437 | 2.90e-23 | 106 |
| Msa0756690 | MtrunA17_Chr5g0405291 | 30.667 | 225 | 121 | 1 | 43 | 267 | 71 | 260 | 7.36e-20 | 95.1 |
| Msa0756690 | MtrunA17_Chr3g0130811 | 27.157 | 394 | 197 | 10 | 32 | 389 | 41 | 380 | 6.53e-18 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756690 | AT2G23360.1 | 33.681 | 671 | 327 | 21 | 251 | 880 | 299 | 892 | 1.92e-80 | 279 |
| Msa0756690 | AT2G23360.1 | 37.692 | 260 | 108 | 4 | 1 | 260 | 1 | 206 | 6.87e-38 | 153 |
| Msa0756690 | AT1G19835.6 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT1G19835.5 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT1G19835.3 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT1G19835.1 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT1G19835.4 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT1G19835.2 | 29.825 | 285 | 147 | 2 | 1 | 267 | 1 | 250 | 1.38e-27 | 120 |
| Msa0756690 | AT4G36120.2 | 27.797 | 295 | 150 | 4 | 1 | 267 | 1 | 260 | 2.12e-23 | 107 |
| Msa0756690 | AT4G36120.1 | 27.797 | 295 | 150 | 4 | 1 | 267 | 1 | 260 | 2.12e-23 | 107 |
| Msa0756690 | AT1G77580.1 | 28.693 | 352 | 154 | 6 | 34 | 374 | 15 | 280 | 9.58e-21 | 98.2 |
| Msa0756690 | AT3G19370.3 | 41.060 | 151 | 75 | 5 | 622 | 765 | 476 | 619 | 2.07e-20 | 97.4 |
| Msa0756690 | AT3G19370.1 | 41.060 | 151 | 75 | 5 | 622 | 765 | 476 | 619 | 2.07e-20 | 97.4 |
| Msa0756690 | AT3G19370.2 | 41.060 | 151 | 75 | 5 | 622 | 765 | 476 | 619 | 2.07e-20 | 97.4 |
| Msa0756690 | AT1G47900.3 | 26.141 | 241 | 143 | 1 | 41 | 281 | 109 | 314 | 5.37e-19 | 93.2 |
| Msa0756690 | AT1G47900.3 | 27.465 | 568 | 322 | 24 | 254 | 762 | 415 | 951 | 7.20e-14 | 76.6 |
| Msa0756690 | AT1G47900.1 | 26.141 | 241 | 143 | 1 | 41 | 281 | 109 | 314 | 5.37e-19 | 93.2 |
| Msa0756690 | AT1G47900.1 | 27.465 | 568 | 322 | 24 | 254 | 762 | 415 | 951 | 7.20e-14 | 76.6 |
| Msa0756690 | AT1G47900.2 | 26.141 | 241 | 143 | 1 | 41 | 281 | 109 | 314 | 5.50e-19 | 93.2 |
| Msa0756690 | AT1G47900.2 | 27.113 | 568 | 322 | 24 | 254 | 762 | 415 | 949 | 1.06e-12 | 72.8 |
| Msa0756690 | AT1G21810.3 | 29.730 | 296 | 156 | 10 | 116 | 407 | 33 | 280 | 3.86e-16 | 83.6 |
| Msa0756690 | AT1G21810.1 | 29.730 | 296 | 156 | 10 | 116 | 407 | 33 | 280 | 3.86e-16 | 83.6 |
| Msa0756690 | AT3G05270.3 | 27.320 | 388 | 198 | 11 | 1 | 374 | 1 | 318 | 2.77e-15 | 80.5 |
| Msa0756690 | AT3G05270.2 | 27.320 | 388 | 198 | 11 | 1 | 374 | 1 | 318 | 2.77e-15 | 80.5 |
| Msa0756690 | AT3G05270.1 | 27.320 | 388 | 198 | 11 | 1 | 374 | 1 | 318 | 2.77e-15 | 80.5 |
Find 133 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTCCTGGTTGGTTTC+AGG | 0.209069 | 5_2:+11210532 | Msa0756690:CDS |
| AAAGCATTACTCTTGAAAAT+TGG | 0.216186 | 5_2:-11210043 | None:intergenic |
| TGCAATGCAATATTACTTCT+AGG | 0.243634 | 5_2:-11210137 | None:intergenic |
| CGATGTTAATGTCAATTCTT+TGG | 0.250185 | 5_2:+11211966 | Msa0756690:CDS |
| ATGTTTCAATGACATATTAA+AGG | 0.254252 | 5_2:+11210508 | Msa0756690:CDS |
| AGTGAAAATGAAGCTAAAAT+TGG | 0.273638 | 5_2:+11211064 | Msa0756690:CDS |
| TGTACTTGAGGATATTAAAT+TGG | 0.274597 | 5_2:+11210610 | Msa0756690:CDS |
| GACAATGATCCCAAATGTTT+TGG | 0.275589 | 5_2:-11210266 | None:intergenic |
| ACCTTCAGATATAAACCTTA+TGG | 0.282326 | 5_2:+11210304 | Msa0756690:CDS |
| TCTCTTCACTCTGGTGTATA+CGG | 0.284690 | 5_2:+11212198 | Msa0756690:three_prime_UTR |
| AACAGCTGCTTCGGAGAAAT+TGG | 0.292771 | 5_2:+11211648 | Msa0756690:CDS |
| TTTAGCATTAGAAGTGGAAT+TGG | 0.295970 | 5_2:+11211294 | Msa0756690:CDS |
| GTTTAAAAGTCCAAAACATT+TGG | 0.296321 | 5_2:+11210256 | Msa0756690:CDS |
| TCATTGTCATGCCAAAGTTT+TGG | 0.300151 | 5_2:+11210281 | Msa0756690:CDS |
| AACAGATACGAGTCTATTTC+AGG | 0.303743 | 5_2:+11211114 | Msa0756690:CDS |
| TATGGATGATTTCATTGAAA+TGG | 0.312296 | 5_2:+11210322 | Msa0756690:CDS |
| CGAAGAAAGAGTCGCGCATT+TGG | 0.328670 | 5_2:+11209662 | Msa0756690:CDS |
| TGCATTGCAAGAGTTATCTT+TGG | 0.328860 | 5_2:+11210151 | Msa0756690:CDS |
| GGAATTCGCTGCATCGAATT+CGG | 0.332447 | 5_2:+11210481 | Msa0756690:CDS |
| CCTTCAACTTCATTCTTAGA+AGG | 0.334402 | 5_2:+11208624 | Msa0756690:five_prime_UTR |
| CTTATAAAAGTTTCATTTGA+AGG | 0.349948 | 5_2:+11209564 | Msa0756690:CDS |
| GCTTTGGGATGTTTCAAGTA+TGG | 0.350475 | 5_2:+11211000 | Msa0756690:CDS |
| TTTAAAAGTCCAAAACATTT+GGG | 0.353219 | 5_2:+11210257 | Msa0756690:CDS |
| CGATATGTGTTACAGTATAC+TGG | 0.359514 | 5_2:+11210901 | Msa0756690:CDS |
| CAGCAAGCATCTGATCCAAT+AGG | 0.362904 | 5_2:-11211843 | None:intergenic |
| GTCTGATTCTGATCATATCT+TGG | 0.365215 | 5_2:+11210460 | Msa0756690:CDS |
| TTTCTTCGTAAATTAGTTCC+TGG | 0.368040 | 5_2:-11209647 | None:intergenic |
| TGCATTGATCTGGATTATTC+AGG | 0.371659 | 5_2:-11210643 | None:intergenic |
| CTTAGAAGGTCATGTAAGTA+TGG | 0.374854 | 5_2:+11208638 | Msa0756690:five_prime_UTR |
| ATATCCTCAAGTACATCATC+AGG | 0.383978 | 5_2:-11210602 | None:intergenic |
| AGCTTGTGGAAAAGGATGTT+AGG | 0.384604 | 5_2:+11212021 | Msa0756690:CDS |
| ATATTAAAGGGTAATATTCC+TGG | 0.390428 | 5_2:+11210521 | Msa0756690:CDS |
| TCAACTGCTTCTCAAGGTTA+AGG | 0.391161 | 5_2:-11211690 | None:intergenic |
| AGTTGAAGGTTCATAAGTTT+AGG | 0.392039 | 5_2:-11208610 | None:intergenic |
| GAATCTAATGTGCATTGATC+TGG | 0.392218 | 5_2:-11210653 | None:intergenic |
| AACATTGCTGTAATTTGTAA+TGG | 0.396358 | 5_2:+11212147 | Msa0756690:three_prime_UTR |
| TAGGCTGCTCCGATGCTACT+TGG | 0.396898 | 5_2:-11210118 | None:intergenic |
| TCACCGACGCTCTGAGTTCA+AGG | 0.405881 | 5_2:-11208493 | None:intergenic |
| TGTTTCAATGACATATTAAA+GGG | 0.406955 | 5_2:+11210509 | Msa0756690:CDS |
| TTTCAATGAAATCATCCATA+AGG | 0.409508 | 5_2:-11210319 | None:intergenic |
| TTCTGCATTGATTTCAGAAT+CGG | 0.409535 | 5_2:+11210229 | Msa0756690:CDS |
| GAATTGTCGTTATCGTCAAC+AGG | 0.413979 | 5_2:-11210809 | None:intergenic |
| GATCGTAATGCATTGATGAT+TGG | 0.414393 | 5_2:+11209936 | Msa0756690:CDS |
| AGAGATATGAATAAATCAAT+AGG | 0.415065 | 5_2:+11210752 | Msa0756690:CDS |
| GTGATCGATAATCCATTTCA+TGG | 0.417721 | 5_2:-11210969 | None:intergenic |
| TTGATCTTCAAGTCTTCTGT+TGG | 0.420207 | 5_2:-11211191 | None:intergenic |
| AACTAACTACAGCCATGAAA+TGG | 0.421739 | 5_2:+11210957 | Msa0756690:CDS |
| GACGACTAAGCTTGTGGAAA+AGG | 0.426167 | 5_2:+11212013 | Msa0756690:CDS |
| CTAGTTGTGTTTGTAACTAT+AGG | 0.427992 | 5_2:-11211775 | None:intergenic |
| TGTCTAATTCTTCACAAAAG+TGG | 0.435433 | 5_2:-11211327 | None:intergenic |
| GAAGCAAATAATGAAACAAT+TGG | 0.438921 | 5_2:+11210401 | Msa0756690:CDS |
| GATCAATGCACATTAGATTC+AGG | 0.440457 | 5_2:+11210656 | Msa0756690:CDS |
| ATAACCACTTCTATAGTCAT+AGG | 0.443767 | 5_2:-11209406 | None:intergenic |
| AAAAGTTTCATTTGAAGGAT+GGG | 0.446989 | 5_2:+11209569 | Msa0756690:CDS |
| TACAGAAACTGAATTAAAAG+AGG | 0.449220 | 5_2:+11211258 | Msa0756690:CDS |
| CCTTCTAAGAATGAAGTTGA+AGG | 0.451071 | 5_2:-11208624 | None:intergenic |
| TATCTGAAGGTCCAAAACTT+TGG | 0.451418 | 5_2:-11210292 | None:intergenic |
| TTTATCTTCTCAGCACGAAA+AGG | 0.451638 | 5_2:+11211480 | Msa0756690:intron |
| GGATGTAGTTGAAGTCGTAT+TGG | 0.452694 | 5_2:+11210553 | Msa0756690:CDS |
| CTATAGAAGTGGTTATGATA+AGG | 0.454282 | 5_2:+11209413 | Msa0756690:CDS |
| GTGGAAAACATCCGATTTGA+GGG | 0.454638 | 5_2:+11210859 | Msa0756690:CDS |
| TATAGAAGTGGTTATGATAA+GGG | 0.454936 | 5_2:+11209414 | Msa0756690:CDS |
| AACTTCAGCTTCAGCTTGAA+AGG | 0.457589 | 5_2:+11211362 | Msa0756690:CDS |
| TAACCTTGAGAAGCAGTTGA+AGG | 0.457699 | 5_2:+11211693 | Msa0756690:CDS |
| TAAAAGTTTCATTTGAAGGA+TGG | 0.464294 | 5_2:+11209568 | Msa0756690:CDS |
| GATTTATGATGCTGTAATGA+AGG | 0.465323 | 5_2:+11209746 | Msa0756690:CDS |
| ATGGGAGATAACAGCTGCTT+CGG | 0.465824 | 5_2:+11211639 | Msa0756690:CDS |
| AAAATGATTGAGCTTATTGA+AGG | 0.474560 | 5_2:+11210776 | Msa0756690:CDS |
| ATAAGTTTAGGTGCAAGAAA+TGG | 0.474992 | 5_2:-11208598 | None:intergenic |
| TTATCTTCTCAGCACGAAAA+GGG | 0.476370 | 5_2:+11211481 | Msa0756690:intron |
| AGCTGAAATGTTGTCAATGA+AGG | 0.478178 | 5_2:+11209602 | Msa0756690:CDS |
| ACGAAAAGGGCACGCTCAAA+TGG | 0.478503 | 5_2:+11211494 | Msa0756690:CDS |
| AGCAAGCATCTGATCCAATA+GGG | 0.480960 | 5_2:-11211842 | None:intergenic |
| AGTGGAAAACATCCGATTTG+AGG | 0.484506 | 5_2:+11210858 | Msa0756690:CDS |
| GGATCAAAAGCAGTGGGAGT+GGG | 0.489362 | 5_2:+11208874 | Msa0756690:CDS |
| TGGATCAAAAGCAGTGGGAG+TGG | 0.491574 | 5_2:+11208873 | Msa0756690:CDS |
| CTGTAAGACATCCCTCAAAT+CGG | 0.491698 | 5_2:-11210870 | None:intergenic |
| GCATTTGGATCGTGCTCTCA+AGG | 0.499273 | 5_2:+11209677 | Msa0756690:CDS |
| ATTGTTCAAGAAGCAGTGTC+AGG | 0.505727 | 5_2:+11209259 | Msa0756690:CDS |
| AGTGTCAAGATATCTACTTA+AGG | 0.511028 | 5_2:-11211230 | None:intergenic |
| GATCAAAAGCAGTGGGAGTG+GGG | 0.513006 | 5_2:+11208875 | Msa0756690:CDS |
| TAATACTTCTCTGATGTATG+AGG | 0.519659 | 5_2:+11209980 | Msa0756690:CDS |
| CTGCTTCTCAAGGTTAAGGA+TGG | 0.523429 | 5_2:-11211686 | None:intergenic |
| TTGCAACTCCGATCTTAAGT+TGG | 0.524829 | 5_2:-11211155 | None:intergenic |
| TGTTCCCTTAAAAGACATGA+AGG | 0.529746 | 5_2:+11211804 | Msa0756690:CDS |
| TCTCTTTATCAATGAAGTCT+CGG | 0.537360 | 5_2:-11210711 | None:intergenic |
| GCTTGTGGAAAAGGATGTTA+GGG | 0.537823 | 5_2:+11212022 | Msa0756690:CDS |
| TCCATAAGGTTTATATCTGA+AGG | 0.537970 | 5_2:-11210305 | None:intergenic |
| AACTATAGGACGACGATGAG+CGG | 0.540590 | 5_2:-11211761 | None:intergenic |
| CATGGCTGTAGTTAGTTCTG+TGG | 0.541228 | 5_2:-11210951 | None:intergenic |
| TTGCCTTCAACTGCTTCTCA+AGG | 0.543029 | 5_2:-11211696 | None:intergenic |
| GTGATGACAATGTTAGCTGC+GGG | 0.546271 | 5_2:+11210195 | Msa0756690:CDS |
| TAACCCTGATGATGTACTTG+AGG | 0.548421 | 5_2:+11210598 | Msa0756690:CDS |
| TGAGGCTCGAGTGCTTCAAA+AGG | 0.551293 | 5_2:+11209998 | Msa0756690:CDS |
| TGTTAGCTGCGGGGAATCCT+CGG | 0.552410 | 5_2:+11210205 | Msa0756690:CDS |
| CTGAAAAGCACGGATCATGA+AGG | 0.555921 | 5_2:-11210837 | None:intergenic |
| TTAGAGAGGAACAAGAGCAA+AGG | 0.564423 | 5_2:+11209724 | Msa0756690:CDS |
| TAGTTGAATACTTTCTGAGA+GGG | 0.565156 | 5_2:+11212108 | Msa0756690:three_prime_UTR |
| ACAATTGAATCAAGCAGAGG+TGG | 0.571049 | 5_2:+11209914 | Msa0756690:CDS |
| TTTGTAATGGAGAGAAGTGA+GGG | 0.571132 | 5_2:+11212160 | Msa0756690:three_prime_UTR |
| TACTATTGCCAACTTAAGAT+CGG | 0.573752 | 5_2:+11211147 | Msa0756690:CDS |
| TTGGGATGTTTCAAGTATGG+AGG | 0.576602 | 5_2:+11211003 | Msa0756690:CDS |
| TTGGCATCAATGTCTTACAT+TGG | 0.578470 | 5_2:+11210170 | Msa0756690:CDS |
| TAAAGGGTAATATTCCTGGT+TGG | 0.583360 | 5_2:+11210525 | Msa0756690:CDS |
| CATGCCTATGACTATAGAAG+TGG | 0.587262 | 5_2:+11209402 | Msa0756690:CDS |
| TCCTAATGGATCAAAAGCAG+TGG | 0.590014 | 5_2:+11208867 | Msa0756690:exon |
| TGAAATGGAAAAGTTAGCAG+TGG | 0.590166 | 5_2:+11210337 | Msa0756690:CDS |
| AATATGGACGACTAAGCTTG+TGG | 0.590327 | 5_2:+11212007 | Msa0756690:CDS |
| ATTTGTAATGGAGAGAAGTG+AGG | 0.596142 | 5_2:+11212159 | Msa0756690:three_prime_UTR |
| CCTAATGGATCAAAAGCAGT+GGG | 0.599875 | 5_2:+11208868 | Msa0756690:exon |
| TGAAAAGCACGGATCATGAA+GGG | 0.602673 | 5_2:-11210836 | None:intergenic |
| TACTTCAAATGAAAATGAAG+AGG | 0.605732 | 5_2:+11208946 | Msa0756690:CDS |
| TTTCCTTGAACTCAGAGCGT+CGG | 0.612395 | 5_2:+11208490 | Msa0756690:five_prime_UTR |
| ATCAAAAGCAGTGGGAGTGG+GGG | 0.619363 | 5_2:+11208876 | Msa0756690:CDS |
| GATGAACTTACATTTCGCAC+CGG | 0.623235 | 5_2:-11211539 | None:intergenic |
| AGCATCTGATCCAATAGGGA+CGG | 0.624671 | 5_2:-11211838 | None:intergenic |
| GTCAATGAAGGAACATCTCG+AGG | 0.624828 | 5_2:+11209614 | Msa0756690:CDS |
| AAATGATTGAGCTTATTGAA+GGG | 0.624850 | 5_2:+11210777 | Msa0756690:CDS |
| GTAGTTGAATACTTTCTGAG+AGG | 0.635294 | 5_2:+11212107 | Msa0756690:three_prime_UTR |
| TCTCGAGGAATCTATACACC+AGG | 0.636451 | 5_2:+11209629 | Msa0756690:CDS |
| TGAAATCAATGCAGAAGCCG+AGG | 0.638690 | 5_2:-11210222 | None:intergenic |
| ACTACATCCTGAAACCAACC+AGG | 0.644112 | 5_2:-11210539 | None:intergenic |
| ATGTGTTACAGTATACTGGA+TGG | 0.649581 | 5_2:+11210905 | Msa0756690:CDS |
| TTACAGTATACTGGATGGCA+AGG | 0.656212 | 5_2:+11210910 | Msa0756690:CDS |
| TATCCTCAAGTACATCATCA+GGG | 0.668515 | 5_2:-11210601 | None:intergenic |
| CATTGATTTCAGAATCGGAG+CGG | 0.673449 | 5_2:+11210234 | Msa0756690:CDS |
| ATATGATCAGAATCAGACAA+TGG | 0.680750 | 5_2:-11210455 | None:intergenic |
| AAGACAATTGAATCAAGCAG+AGG | 0.682347 | 5_2:+11209911 | Msa0756690:CDS |
| TCAAACGTTTAATGATCCGA+CGG | 0.684037 | 5_2:+11209437 | Msa0756690:CDS |
| AGTGATGACAATGTTAGCTG+CGG | 0.696806 | 5_2:+11210194 | Msa0756690:CDS |
| AGAAGCATGAGAAATTTCAG+TGG | 0.704549 | 5_2:-11210375 | None:intergenic |
| GTGCTCTCAAGGAATGTATG+CGG | 0.712810 | 5_2:+11209688 | Msa0756690:CDS |
| TGATGACAATGTTAGCTGCG+GGG | 0.725043 | 5_2:+11210196 | Msa0756690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTTATTTATATAT+TGG | + | chr5_2:11209016-11209035 | Msa0756690:intron | 0.0% |
| !! | TACATGATTTAATTATTATA+TGG | + | chr5_2:11208716-11208735 | Msa0756690:intron | 10.0% |
| !! | ATAACTAATATATATATTGA+AGG | - | chr5_2:11211405-11211424 | None:intergenic | 10.0% |
| !!! | TGGAATAAATTATTTTGTTA+AGG | + | chr5_2:11208658-11208677 | Msa0756690:five_prime_UTR | 15.0% |
| !! | AAAATAATAGATGTTAGAAA+AGG | - | chr5_2:11208985-11209004 | None:intergenic | 15.0% |
| !!! | TTGTTTTATTTTTCTGTTTT+AGG | + | chr5_2:11209114-11209133 | Msa0756690:intron | 15.0% |
| !!! | TTTTTTAAGAGCAGTTATAT+TGG | + | chr5_2:11209538-11209557 | Msa0756690:intron | 20.0% |
| !! | CTTATAAAAGTTTCATTTGA+AGG | + | chr5_2:11209564-11209583 | Msa0756690:CDS | 20.0% |
| !! | TTTAAAAGTCCAAAACATTT+GGG | + | chr5_2:11210257-11210276 | Msa0756690:CDS | 20.0% |
| !! | ATGTTTCAATGACATATTAA+AGG | + | chr5_2:11210508-11210527 | Msa0756690:CDS | 20.0% |
| !! | TGTTTCAATGACATATTAAA+GGG | + | chr5_2:11210509-11210528 | Msa0756690:CDS | 20.0% |
| !! | AGAGATATGAATAAATCAAT+AGG | + | chr5_2:11210752-11210771 | Msa0756690:CDS | 20.0% |
| !! | CATCAAAAAGAAATTTGATT+GGG | + | chr5_2:11211030-11211049 | Msa0756690:CDS | 20.0% |
| !! | TTGAAGACTAATTTTCCTAA+TGG | + | chr5_2:11208853-11208872 | Msa0756690:exon | 25.0% |
| ! | TACTTCAAATGAAAATGAAG+AGG | + | chr5_2:11208946-11208965 | Msa0756690:CDS | 25.0% |
| !!! | GATTCTAAAATGCAACTAAT+TGG | + | chr5_2:11209078-11209097 | Msa0756690:intron | 25.0% |
| ! | TATAGAAGTGGTTATGATAA+GGG | + | chr5_2:11209414-11209433 | Msa0756690:CDS | 25.0% |
| ! | TAAAAGTTTCATTTGAAGGA+TGG | + | chr5_2:11209568-11209587 | Msa0756690:CDS | 25.0% |
| ! | AAAAGTTTCATTTGAAGGAT+GGG | + | chr5_2:11209569-11209588 | Msa0756690:CDS | 25.0% |
| !! | AAAGCATTACTCTTGAAAAT+TGG | - | chr5_2:11210046-11210065 | None:intergenic | 25.0% |
| ! | GTTTAAAAGTCCAAAACATT+TGG | + | chr5_2:11210256-11210275 | Msa0756690:CDS | 25.0% |
| ! | TTTCAATGAAATCATCCATA+AGG | - | chr5_2:11210322-11210341 | None:intergenic | 25.0% |
| ! | TATGGATGATTTCATTGAAA+TGG | + | chr5_2:11210322-11210341 | Msa0756690:CDS | 25.0% |
| ! | GAAGCAAATAATGAAACAAT+TGG | + | chr5_2:11210401-11210420 | Msa0756690:CDS | 25.0% |
| ! | ATATTAAAGGGTAATATTCC+TGG | + | chr5_2:11210521-11210540 | Msa0756690:CDS | 25.0% |
| ! | TGTACTTGAGGATATTAAAT+TGG | + | chr5_2:11210610-11210629 | Msa0756690:CDS | 25.0% |
| ! | AAAATGATTGAGCTTATTGA+AGG | + | chr5_2:11210776-11210795 | Msa0756690:CDS | 25.0% |
| ! | AAATGATTGAGCTTATTGAA+GGG | + | chr5_2:11210777-11210796 | Msa0756690:CDS | 25.0% |
| !! | CCAATCAAATTTCTTTTTGA+TGG | - | chr5_2:11211032-11211051 | None:intergenic | 25.0% |
| ! | CCATCAAAAAGAAATTTGAT+TGG | + | chr5_2:11211029-11211048 | Msa0756690:CDS | 25.0% |
| ! | AGTGAAAATGAAGCTAAAAT+TGG | + | chr5_2:11211064-11211083 | Msa0756690:CDS | 25.0% |
| ! | TACAGAAACTGAATTAAAAG+AGG | + | chr5_2:11211258-11211277 | Msa0756690:CDS | 25.0% |
| !!! | AAAACTACAATCTTTTCAAG+TGG | - | chr5_2:11211922-11211941 | None:intergenic | 25.0% |
| !!! | GAAAAGATTGTAGTTTTGAA+AGG | + | chr5_2:11211925-11211944 | Msa0756690:CDS | 25.0% |
| !!! | GTAGTTTTGAAAGGATTAAA+AGG | + | chr5_2:11211934-11211953 | Msa0756690:CDS | 25.0% |
| !! | ATTTTACCTGCCAAAAAATA+TGG | + | chr5_2:11211991-11212010 | Msa0756690:CDS | 25.0% |
| !! | AACATTGCTGTAATTTGTAA+TGG | + | chr5_2:11212147-11212166 | Msa0756690:three_prime_UTR | 25.0% |
| !! | CTTTGAAGTTGAGAAAAAGA+GGG | - | chr5_2:11208568-11208587 | None:intergenic | 30.0% |
| !! | ACTTTGAAGTTGAGAAAAAG+AGG | - | chr5_2:11208569-11208588 | None:intergenic | 30.0% |
| ATAAGTTTAGGTGCAAGAAA+TGG | - | chr5_2:11208601-11208620 | None:intergenic | 30.0% | |
| AGTTGAAGGTTCATAAGTTT+AGG | - | chr5_2:11208613-11208632 | None:intergenic | 30.0% | |
| GTAGTCATGATCAAACTATT+TGG | + | chr5_2:11208759-11208778 | Msa0756690:intron | 30.0% | |
| TCAAATGAAAATGAAGAGGT+AGG | + | chr5_2:11208950-11208969 | Msa0756690:intron | 30.0% | |
| !! | TATTTTTCTGTTTTAGGTGC+TGG | + | chr5_2:11209120-11209139 | Msa0756690:intron | 30.0% |
| TCTGGCTGATAAAGAAAAAT+TGG | + | chr5_2:11209147-11209166 | Msa0756690:CDS | 30.0% | |
| ATAACCACTTCTATAGTCAT+AGG | - | chr5_2:11209409-11209428 | None:intergenic | 30.0% | |
| CTATAGAAGTGGTTATGATA+AGG | + | chr5_2:11209413-11209432 | Msa0756690:CDS | 30.0% | |
| ACTCTTTACACTTACAGTTA+CGG | + | chr5_2:11209484-11209503 | Msa0756690:intron | 30.0% | |
| TTTCTTCGTAAATTAGTTCC+TGG | - | chr5_2:11209650-11209669 | None:intergenic | 30.0% | |
| GATTTATGATGCTGTAATGA+AGG | + | chr5_2:11209746-11209765 | Msa0756690:CDS | 30.0% | |
| TAATACTTCTCTGATGTATG+AGG | + | chr5_2:11209980-11209999 | Msa0756690:CDS | 30.0% | |
| TGCAATGCAATATTACTTCT+AGG | - | chr5_2:11210140-11210159 | None:intergenic | 30.0% | |
| !! | TTCTGCATTGATTTCAGAAT+CGG | + | chr5_2:11210229-11210248 | Msa0756690:CDS | 30.0% |
| ACCTTCAGATATAAACCTTA+TGG | + | chr5_2:11210304-11210323 | Msa0756690:CDS | 30.0% | |
| TCCATAAGGTTTATATCTGA+AGG | - | chr5_2:11210308-11210327 | None:intergenic | 30.0% | |
| ATATGATCAGAATCAGACAA+TGG | - | chr5_2:11210458-11210477 | None:intergenic | 30.0% | |
| TCTCTTTATCAATGAAGTCT+CGG | - | chr5_2:11210714-11210733 | None:intergenic | 30.0% | |
| TACTATTGCCAACTTAAGAT+CGG | + | chr5_2:11211147-11211166 | Msa0756690:CDS | 30.0% | |
| AGTGTCAAGATATCTACTTA+AGG | - | chr5_2:11211233-11211252 | None:intergenic | 30.0% | |
| !! | CAAGATTTTAGCATTAGAAG+TGG | + | chr5_2:11211288-11211307 | Msa0756690:CDS | 30.0% |
| TTTAGCATTAGAAGTGGAAT+TGG | + | chr5_2:11211294-11211313 | Msa0756690:CDS | 30.0% | |
| TGTCTAATTCTTCACAAAAG+TGG | - | chr5_2:11211330-11211349 | None:intergenic | 30.0% | |
| ! | GCAGTACTGTAATATGATTT+TGG | + | chr5_2:11211429-11211448 | Msa0756690:intron | 30.0% |
| CATTAATCAGAAAAATGAGC+CGG | + | chr5_2:11211520-11211539 | Msa0756690:CDS | 30.0% | |
| ! | AGAAATAGATTTTCCTGCTA+AGG | - | chr5_2:11211574-11211593 | None:intergenic | 30.0% |
| CTAGTTGTGTTTGTAACTAT+AGG | - | chr5_2:11211778-11211797 | None:intergenic | 30.0% | |
| ! | TTCACCTTCATGTCTTTTAA+GGG | - | chr5_2:11211811-11211830 | None:intergenic | 30.0% |
| ! | TTTCACCTTCATGTCTTTTA+AGG | - | chr5_2:11211812-11211831 | None:intergenic | 30.0% |
| !!! | TTCGCTTGTTTTACAAAACT+TGG | - | chr5_2:11211884-11211903 | None:intergenic | 30.0% |
| CGATGTTAATGTCAATTCTT+TGG | + | chr5_2:11211966-11211985 | Msa0756690:CDS | 30.0% | |
| !! | TGATACACTTGTTTTCGTTT+CGG | - | chr5_2:11212060-11212079 | None:intergenic | 30.0% |
| ! | TAGTTGAATACTTTCTGAGA+GGG | + | chr5_2:11212108-11212127 | Msa0756690:three_prime_UTR | 30.0% |
| TGAGAAAAAGAGGGTGATAA+AGG | - | chr5_2:11208559-11208578 | None:intergenic | 35.0% | |
| ! | CCTTCTAAGAATGAAGTTGA+AGG | - | chr5_2:11208627-11208646 | None:intergenic | 35.0% |
| CCTTCAACTTCATTCTTAGA+AGG | + | chr5_2:11208624-11208643 | Msa0756690:five_prime_UTR | 35.0% | |
| CTTAGAAGGTCATGTAAGTA+TGG | + | chr5_2:11208638-11208657 | Msa0756690:five_prime_UTR | 35.0% | |
| ! | CTGATTCTGCATGCATATTT+TGG | - | chr5_2:11208827-11208846 | None:intergenic | 35.0% |
| TCAAACGTTTAATGATCCGA+CGG | + | chr5_2:11209437-11209456 | Msa0756690:CDS | 35.0% | |
| TCTCAATCAATCATAACCGT+CGG | - | chr5_2:11209456-11209475 | None:intergenic | 35.0% | |
| AGCTGAAATGTTGTCAATGA+AGG | + | chr5_2:11209602-11209621 | Msa0756690:CDS | 35.0% | |
| ! | GCAGTTACATTTTGTTAGAG+AGG | + | chr5_2:11209710-11209729 | Msa0756690:CDS | 35.0% |
| AAGACAATTGAATCAAGCAG+AGG | + | chr5_2:11209911-11209930 | Msa0756690:CDS | 35.0% | |
| ! | GATCGTAATGCATTGATGAT+TGG | + | chr5_2:11209936-11209955 | Msa0756690:CDS | 35.0% |
| ATCCAAAAACCAAGTAGCAT+CGG | + | chr5_2:11210109-11210128 | Msa0756690:CDS | 35.0% | |
| TGCATTGCAAGAGTTATCTT+TGG | + | chr5_2:11210151-11210170 | Msa0756690:CDS | 35.0% | |
| TTGGCATCAATGTCTTACAT+TGG | + | chr5_2:11210170-11210189 | Msa0756690:CDS | 35.0% | |
| ! | GACAATGATCCCAAATGTTT+TGG | - | chr5_2:11210269-11210288 | None:intergenic | 35.0% |
| ! | TCATTGTCATGCCAAAGTTT+TGG | + | chr5_2:11210281-11210300 | Msa0756690:CDS | 35.0% |
| TATCTGAAGGTCCAAAACTT+TGG | - | chr5_2:11210295-11210314 | None:intergenic | 35.0% | |
| TGAAATGGAAAAGTTAGCAG+TGG | + | chr5_2:11210337-11210356 | Msa0756690:CDS | 35.0% | |
| ! | AGAAGCATGAGAAATTTCAG+TGG | - | chr5_2:11210378-11210397 | None:intergenic | 35.0% |
| GTCTGATTCTGATCATATCT+TGG | + | chr5_2:11210460-11210479 | Msa0756690:CDS | 35.0% | |
| TAAAGGGTAATATTCCTGGT+TGG | + | chr5_2:11210525-11210544 | Msa0756690:CDS | 35.0% | |
| !! | TAATATTCCTGGTTGGTTTC+AGG | + | chr5_2:11210532-11210551 | Msa0756690:CDS | 35.0% |
| TATCCTCAAGTACATCATCA+GGG | - | chr5_2:11210604-11210623 | None:intergenic | 35.0% | |
| ATATCCTCAAGTACATCATC+AGG | - | chr5_2:11210605-11210624 | None:intergenic | 35.0% | |
| ! | TGCATTGATCTGGATTATTC+AGG | - | chr5_2:11210646-11210665 | None:intergenic | 35.0% |
| ! | GAATCTAATGTGCATTGATC+TGG | - | chr5_2:11210656-11210675 | None:intergenic | 35.0% |
| GATCAATGCACATTAGATTC+AGG | + | chr5_2:11210656-11210675 | Msa0756690:CDS | 35.0% | |
| ! | ATGTTTTCCACTGAAAAGCA+CGG | - | chr5_2:11210850-11210869 | None:intergenic | 35.0% |
| CGATATGTGTTACAGTATAC+TGG | + | chr5_2:11210901-11210920 | Msa0756690:CDS | 35.0% | |
| ATGTGTTACAGTATACTGGA+TGG | + | chr5_2:11210905-11210924 | Msa0756690:CDS | 35.0% | |
| AACTAACTACAGCCATGAAA+TGG | + | chr5_2:11210957-11210976 | Msa0756690:CDS | 35.0% | |
| GTGATCGATAATCCATTTCA+TGG | - | chr5_2:11210972-11210991 | None:intergenic | 35.0% | |
| AACAGATACGAGTCTATTTC+AGG | + | chr5_2:11211114-11211133 | Msa0756690:CDS | 35.0% | |
| TTGATCTTCAAGTCTTCTGT+TGG | - | chr5_2:11211194-11211213 | None:intergenic | 35.0% | |
| TTTATCTTCTCAGCACGAAA+AGG | + | chr5_2:11211480-11211499 | Msa0756690:intron | 35.0% | |
| TTATCTTCTCAGCACGAAAA+GGG | + | chr5_2:11211481-11211500 | Msa0756690:intron | 35.0% | |
| !! | CATCTGTTTTATTCCTTAGC+AGG | + | chr5_2:11211558-11211577 | Msa0756690:intron | 35.0% |
| TGTTTGTTTACATATCCTGC+AGG | + | chr5_2:11211615-11211634 | Msa0756690:intron | 35.0% | |
| TTTACATATCCTGCAGGAAT+GGG | + | chr5_2:11211621-11211640 | Msa0756690:intron | 35.0% | |
| TGTTCCCTTAAAAGACATGA+AGG | + | chr5_2:11211804-11211823 | Msa0756690:CDS | 35.0% | |
| !!! | GCTTAGTCGTCCATATTTTT+TGG | - | chr5_2:11212004-11212023 | None:intergenic | 35.0% |
| GTAGTTGAATACTTTCTGAG+AGG | + | chr5_2:11212107-11212126 | Msa0756690:three_prime_UTR | 35.0% | |
| ! | ATTTGTAATGGAGAGAAGTG+AGG | + | chr5_2:11212159-11212178 | Msa0756690:three_prime_UTR | 35.0% |
| ! | TTTGTAATGGAGAGAAGTGA+GGG | + | chr5_2:11212160-11212179 | Msa0756690:three_prime_UTR | 35.0% |
| !!! | CTGCATGCATATTTTGGTCA+AGG | - | chr5_2:11208821-11208840 | None:intergenic | 40.0% |
| ! | TCCTAATGGATCAAAAGCAG+TGG | + | chr5_2:11208867-11208886 | Msa0756690:exon | 40.0% |
| ! | CCTAATGGATCAAAAGCAGT+GGG | + | chr5_2:11208868-11208887 | Msa0756690:exon | 40.0% |
| ATTGTTCAAGAAGCAGTGTC+AGG | + | chr5_2:11209259-11209278 | Msa0756690:CDS | 40.0% | |
| CATGCCTATGACTATAGAAG+TGG | + | chr5_2:11209402-11209421 | Msa0756690:CDS | 40.0% | |
| TTAGAGAGGAACAAGAGCAA+AGG | + | chr5_2:11209724-11209743 | Msa0756690:CDS | 40.0% | |
| !!! | TCAAGTTCGCGTTGTTTTAG+AGG | + | chr5_2:11209785-11209804 | Msa0756690:CDS | 40.0% |
| ACAATTGAATCAAGCAGAGG+TGG | + | chr5_2:11209914-11209933 | Msa0756690:CDS | 40.0% | |
| AGTGATGACAATGTTAGCTG+CGG | + | chr5_2:11210194-11210213 | Msa0756690:CDS | 40.0% | |
| !! | CATTGATTTCAGAATCGGAG+CGG | + | chr5_2:11210234-11210253 | Msa0756690:CDS | 40.0% |
| GGATGTAGTTGAAGTCGTAT+TGG | + | chr5_2:11210553-11210572 | Msa0756690:CDS | 40.0% | |
| ! | TAACCCTGATGATGTACTTG+AGG | + | chr5_2:11210598-11210617 | Msa0756690:CDS | 40.0% |
| GAATTGTCGTTATCGTCAAC+AGG | - | chr5_2:11210812-11210831 | None:intergenic | 40.0% | |
| ! | TGAAAAGCACGGATCATGAA+GGG | - | chr5_2:11210839-11210858 | None:intergenic | 40.0% |
| ! | AGTGGAAAACATCCGATTTG+AGG | + | chr5_2:11210858-11210877 | Msa0756690:CDS | 40.0% |
| ! | GTGGAAAACATCCGATTTGA+GGG | + | chr5_2:11210859-11210878 | Msa0756690:CDS | 40.0% |
| CTGTAAGACATCCCTCAAAT+CGG | - | chr5_2:11210873-11210892 | None:intergenic | 40.0% | |
| TTACAGTATACTGGATGGCA+AGG | + | chr5_2:11210910-11210929 | Msa0756690:CDS | 40.0% | |
| !! | GCTTTGGGATGTTTCAAGTA+TGG | + | chr5_2:11211000-11211019 | Msa0756690:CDS | 40.0% |
| ! | TTGGGATGTTTCAAGTATGG+AGG | + | chr5_2:11211003-11211022 | Msa0756690:CDS | 40.0% |
| TTGCAACTCCGATCTTAAGT+TGG | - | chr5_2:11211158-11211177 | None:intergenic | 40.0% | |
| AACTTCAGCTTCAGCTTGAA+AGG | + | chr5_2:11211362-11211381 | Msa0756690:CDS | 40.0% | |
| GATGAACTTACATTTCGCAC+CGG | - | chr5_2:11211542-11211561 | None:intergenic | 40.0% | |
| !! | GCAGGAAAATCTATTTCTGC+TGG | + | chr5_2:11211576-11211595 | Msa0756690:intron | 40.0% |
| TCTGCTGGAATATTGTGTTG+AGG | + | chr5_2:11211591-11211610 | Msa0756690:intron | 40.0% | |
| GTTTACATATCCTGCAGGAA+TGG | + | chr5_2:11211620-11211639 | Msa0756690:intron | 40.0% | |
| TCAACTGCTTCTCAAGGTTA+AGG | - | chr5_2:11211693-11211712 | None:intergenic | 40.0% | |
| TAACCTTGAGAAGCAGTTGA+AGG | + | chr5_2:11211693-11211712 | Msa0756690:CDS | 40.0% | |
| AGCAAGCATCTGATCCAATA+GGG | - | chr5_2:11211845-11211864 | None:intergenic | 40.0% | |
| !!! | AGTCGTCCATATTTTTTGGC+AGG | - | chr5_2:11212000-11212019 | None:intergenic | 40.0% |
| AATATGGACGACTAAGCTTG+TGG | + | chr5_2:11212007-11212026 | Msa0756690:CDS | 40.0% | |
| AGCTTGTGGAAAAGGATGTT+AGG | + | chr5_2:11212021-11212040 | Msa0756690:CDS | 40.0% | |
| GCTTGTGGAAAAGGATGTTA+GGG | + | chr5_2:11212022-11212041 | Msa0756690:CDS | 40.0% | |
| ! | GTGTGTTTTTCTCTTCACTC+TGG | + | chr5_2:11212189-11212208 | Msa0756690:three_prime_UTR | 40.0% |
| TCTCTTCACTCTGGTGTATA+CGG | + | chr5_2:11212198-11212217 | Msa0756690:three_prime_UTR | 40.0% | |
| TTTCCTTGAACTCAGAGCGT+CGG | + | chr5_2:11208490-11208509 | Msa0756690:five_prime_UTR | 45.0% | |
| !! | CCCACTGCTTTTGATCCATT+AGG | - | chr5_2:11208871-11208890 | None:intergenic | 45.0% |
| GTCAATGAAGGAACATCTCG+AGG | + | chr5_2:11209614-11209633 | Msa0756690:CDS | 45.0% | |
| TCTCGAGGAATCTATACACC+AGG | + | chr5_2:11209629-11209648 | Msa0756690:CDS | 45.0% | |
| GTGCTCTCAAGGAATGTATG+CGG | + | chr5_2:11209688-11209707 | Msa0756690:CDS | 45.0% | |
| !! | CTCCGATGCTACTTGGTTTT+TGG | - | chr5_2:11210114-11210133 | None:intergenic | 45.0% |
| GTGATGACAATGTTAGCTGC+GGG | + | chr5_2:11210195-11210214 | Msa0756690:CDS | 45.0% | |
| TGATGACAATGTTAGCTGCG+GGG | + | chr5_2:11210196-11210215 | Msa0756690:CDS | 45.0% | |
| TGAAATCAATGCAGAAGCCG+AGG | - | chr5_2:11210225-11210244 | None:intergenic | 45.0% | |
| GGAATTCGCTGCATCGAATT+CGG | + | chr5_2:11210481-11210500 | Msa0756690:CDS | 45.0% | |
| ACTACATCCTGAAACCAACC+AGG | - | chr5_2:11210542-11210561 | None:intergenic | 45.0% | |
| ! | CTGAAAAGCACGGATCATGA+AGG | - | chr5_2:11210840-11210859 | None:intergenic | 45.0% |
| ! | TCATGATCCGTGCTTTTCAG+TGG | + | chr5_2:11210840-11210859 | Msa0756690:CDS | 45.0% |
| !! | CATGGCTGTAGTTAGTTCTG+TGG | - | chr5_2:11210954-11210973 | None:intergenic | 45.0% |
| !! | TCGATCACTGCTTTTCGCTT+TGG | + | chr5_2:11210984-11211003 | Msa0756690:CDS | 45.0% |
| !! | CGATCACTGCTTTTCGCTTT+GGG | + | chr5_2:11210985-11211004 | Msa0756690:CDS | 45.0% |
| ATGGGAGATAACAGCTGCTT+CGG | + | chr5_2:11211639-11211658 | Msa0756690:CDS | 45.0% | |
| AACAGCTGCTTCGGAGAAAT+TGG | + | chr5_2:11211648-11211667 | Msa0756690:CDS | 45.0% | |
| CTGCTTCTCAAGGTTAAGGA+TGG | - | chr5_2:11211689-11211708 | None:intergenic | 45.0% | |
| TTGCCTTCAACTGCTTCTCA+AGG | - | chr5_2:11211699-11211718 | None:intergenic | 45.0% | |
| AACTATAGGACGACGATGAG+CGG | - | chr5_2:11211764-11211783 | None:intergenic | 45.0% | |
| GAAAAATCGACCGTCCCTAT+TGG | + | chr5_2:11211828-11211847 | Msa0756690:CDS | 45.0% | |
| AGCATCTGATCCAATAGGGA+CGG | - | chr5_2:11211841-11211860 | None:intergenic | 45.0% | |
| CAGCAAGCATCTGATCCAAT+AGG | - | chr5_2:11211846-11211865 | None:intergenic | 45.0% | |
| GACGACTAAGCTTGTGGAAA+AGG | + | chr5_2:11212013-11212032 | Msa0756690:CDS | 45.0% | |
| TGGATCAAAAGCAGTGGGAG+TGG | + | chr5_2:11208873-11208892 | Msa0756690:CDS | 50.0% | |
| GGATCAAAAGCAGTGGGAGT+GGG | + | chr5_2:11208874-11208893 | Msa0756690:CDS | 50.0% | |
| GATCAAAAGCAGTGGGAGTG+GGG | + | chr5_2:11208875-11208894 | Msa0756690:CDS | 50.0% | |
| ATCAAAAGCAGTGGGAGTGG+GGG | + | chr5_2:11208876-11208895 | Msa0756690:CDS | 50.0% | |
| GGAGTGGGGGAAAAAGACAA+GGG | + | chr5_2:11208889-11208908 | Msa0756690:CDS | 50.0% | |
| !!! | GTTTTAGGTGCTGGCACTTC+TGG | + | chr5_2:11209129-11209148 | Msa0756690:intron | 50.0% |
| CGAAGAAAGAGTCGCGCATT+TGG | + | chr5_2:11209662-11209681 | Msa0756690:CDS | 50.0% | |
| GCATTTGGATCGTGCTCTCA+AGG | + | chr5_2:11209677-11209696 | Msa0756690:CDS | 50.0% | |
| TGAGGCTCGAGTGCTTCAAA+AGG | + | chr5_2:11209998-11210017 | Msa0756690:CDS | 50.0% | |
| ! | ACGAAAAGGGCACGCTCAAA+TGG | + | chr5_2:11211494-11211513 | Msa0756690:CDS | 50.0% |
| CTGTTATCTCCCATTCCTGC+AGG | - | chr5_2:11211633-11211652 | None:intergenic | 50.0% | |
| ! | TCACCGACGCTCTGAGTTCA+AGG | - | chr5_2:11208496-11208515 | None:intergenic | 55.0% |
| GGGAGTGGGGGAAAAAGACA+AGG | + | chr5_2:11208888-11208907 | Msa0756690:CDS | 55.0% | |
| TAGGCTGCTCCGATGCTACT+TGG | - | chr5_2:11210121-11210140 | None:intergenic | 55.0% | |
| TGTTAGCTGCGGGGAATCCT+CGG | + | chr5_2:11210205-11210224 | Msa0756690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11208471 | 11212323 | 11208471 | ID=Msa0756690;Name=Msa0756690 |
| chr5_2 | mRNA | 11208471 | 11212323 | 11208471 | ID=Msa0756690-mRNA-1;Parent=Msa0756690;Name=Msa0756690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=240|0.66|0.71|0.85|0.83|0.71|7|231|885 |
| chr5_2 | exon | 11208471 | 11208679 | 11208471 | ID=Msa0756690-mRNA-1:exon:4987;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11208841 | 11208967 | 11208841 | ID=Msa0756690-mRNA-1:exon:4988;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11209136 | 11209280 | 11209136 | ID=Msa0756690-mRNA-1:exon:4989;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11209388 | 11209458 | 11209388 | ID=Msa0756690-mRNA-1:exon:4990;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11209552 | 11211383 | 11209552 | ID=Msa0756690-mRNA-1:exon:4991;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11211493 | 11211550 | 11211493 | ID=Msa0756690-mRNA-1:exon:4992;Parent=Msa0756690-mRNA-1 |
| chr5_2 | exon | 11211637 | 11212323 | 11211637 | ID=Msa0756690-mRNA-1:exon:4993;Parent=Msa0756690-mRNA-1 |
| chr5_2 | five_prime_UTR | 11208471 | 11208679 | 11208471 | ID=Msa0756690-mRNA-1:five_prime_utr;Parent=Msa0756690-mRNA-1 |
| chr5_2 | five_prime_UTR | 11208841 | 11208871 | 11208841 | ID=Msa0756690-mRNA-1:five_prime_utr;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11208872 | 11208967 | 11208872 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11209136 | 11209280 | 11209136 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11209388 | 11209458 | 11209388 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11209552 | 11211383 | 11209552 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11211493 | 11211550 | 11211493 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | CDS | 11211637 | 11212092 | 11211637 | ID=Msa0756690-mRNA-1:cds;Parent=Msa0756690-mRNA-1 |
| chr5_2 | three_prime_UTR | 11212093 | 11212323 | 11212093 | ID=Msa0756690-mRNA-1:three_prime_utr;Parent=Msa0756690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
