AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024680 MtrunA17_Chr1g0178661 96.074 484 19 0 53 536 1 484 0.0 872
Msa0024680 MtrunA17_Chr7g0266231 77.218 496 92 10 52 535 7 493 0.0 672
Msa0024680 MtrunA17_Chr3g0100581 60.000 310 122 1 173 482 54 361 9.00e-110 333
Msa0024680 MtrunA17_Chr5g0445051 57.966 295 121 2 189 482 74 366 7.54e-108 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024680 AT3G52750.3 78.738 428 77 3 109 536 60 473 0.0 635
Msa0024680 AT3G52750.2 78.738 428 77 3 109 536 60 473 0.0 635
Msa0024680 AT3G52750.1 78.738 428 77 3 109 536 60 473 0.0 635
Msa0024680 AT2G36250.2 75.435 460 93 8 84 536 32 478 0.0 630
Msa0024680 AT2G36250.3 75.435 460 93 8 84 536 32 478 0.0 630
Msa0024680 AT2G36250.1 75.435 460 93 8 84 536 32 478 0.0 630
Msa0024680 AT2G36250.4 80.988 405 65 6 136 536 1 397 0.0 602
Msa0024680 AT3G52750.4 78.157 293 53 2 109 401 60 341 1.46e-144 420
Msa0024680 AT5G55280.1 56.395 344 146 2 141 482 38 379 3.11e-107 328

Find 137 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTCCTTCAAATGAAAA+AGG 0.157995 1_1:+47372737 None:intergenic
AATGGAAAGTTTGAATCTTT+TGG 0.190151 1_1:-47374932 Msa0024680:CDS
TCGATTGAAGAGGCGGTTTA+TGG 0.213081 1_1:-47374255 Msa0024680:CDS
CAGTCTCCTTTACTGGATAT+TGG 0.228609 1_1:-47372104 Msa0024680:CDS
ATGATATGAACTACCATTAT+TGG 0.238506 1_1:+47374668 None:intergenic
CAGAGCTTGTTATAATTCTT+TGG 0.241011 1_1:-47369641 Msa0024680:three_prime_UTR
TGCTATTCAGTCTCCTTTAC+TGG 0.257008 1_1:-47372111 Msa0024680:CDS
AGATTGAATGCTTCCGTTAC+AGG 0.277515 1_1:+47372608 None:intergenic
CGATGCATGGAGTTGAGTTT+TGG 0.278093 1_1:-47374422 Msa0024680:CDS
CAGGCGAAGATTAAAGTTAT+TGG 0.286240 1_1:-47374492 Msa0024680:CDS
TGCTGATATTCGAGCTATAA+TGG 0.295573 1_1:-47372405 Msa0024680:CDS
CCTGAGGTTTCGATGCTTAG+AGG 0.298697 1_1:-47374618 Msa0024680:CDS
CCTTTCTTCTTTAAGAAATC+AGG 0.304694 1_1:+47369942 None:intergenic
TTAGCTTGTATTCTTGTATA+GGG 0.306127 1_1:-47369679 Msa0024680:three_prime_UTR
ATTAGCTTGTATTCTTGTAT+AGG 0.307271 1_1:-47369680 Msa0024680:three_prime_UTR
GAGAAAGGGTAGTTCTAGTT+TGG 0.317072 1_1:-47374568 Msa0024680:CDS
GTAATAGATCCTTCACTTAC+TGG 0.318596 1_1:-47370985 Msa0024680:CDS
TTAGGTAGTGAGAGAAAGTT+AGG 0.327999 1_1:-47374720 Msa0024680:CDS
TGTTCAATTAATTCCAATAA+TGG 0.333990 1_1:-47374681 Msa0024680:CDS
AAGAGTTGTTCATACAGTTT+TGG 0.336510 1_1:-47369770 Msa0024680:three_prime_UTR
GCTGGAATGGGTGGTGGAAC+CGG 0.337874 1_1:-47372833 Msa0024680:CDS
GCAGTTAATAGCTTGTCATT+TGG 0.353188 1_1:+47372647 None:intergenic
GCAGCATTCATTCCCATCTC+AGG 0.363659 1_1:+47374294 None:intergenic
TTGGAACTTACGCGAGGTCT+TGG 0.365517 1_1:-47374330 Msa0024680:CDS
AATTCCTTCTTGTGCTTGAA+TGG 0.366217 1_1:+47372709 None:intergenic
AAGGAAAATGTTCATAAAAC+AGG 0.377030 1_1:+47369618 None:intergenic
AGTTGTGGGAAGCATTTGAT+TGG 0.378649 1_1:+47375217 None:intergenic
AGGATTTGTCCGAGAGCTTA+GGG 0.379506 1_1:-47374542 Msa0024680:CDS
AATGCTTCCCACAACTTCTC+AGG 0.391050 1_1:-47375210 Msa0024680:intron
GAGGATTTGTCCGAGAGCTT+AGG 0.397003 1_1:-47374543 Msa0024680:CDS
AGCATAACATTAATTGCAAC+CGG 0.408343 1_1:-47370172 Msa0024680:CDS
CAATGCTGGTTCTTCACTGA+TGG 0.410946 1_1:-47372381 Msa0024680:CDS
GAACCGTCTGCAGATTGGTT+TGG 0.412737 1_1:-47374349 Msa0024680:CDS
GGCGGTTTATGGAGCTGATA+TGG 0.416466 1_1:-47374244 Msa0024680:CDS
TGCTGATGATATTCTTCGAC+AGG 0.422970 1_1:-47372585 Msa0024680:CDS
TTCCTCTTGACGCTTGAATC+CGG 0.423864 1_1:+47370153 None:intergenic
ATGGGTGGTGGAACCGGCAC+AGG 0.425036 1_1:-47372827 Msa0024680:CDS
AAAGAAATGCACAGAGCATT+GGG 0.426774 1_1:+47369884 None:intergenic
TGAATATATGGAGAAAACTT+AGG 0.428211 1_1:+47374906 None:intergenic
ACTTACTGAGTGCAGATCCC+TGG 0.436250 1_1:-47372446 Msa0024680:intron
CCCTGCTGAATTTATAGCAT+TGG 0.436792 1_1:+47374821 None:intergenic
CCTGATTTCTTAAAGAAGAA+AGG 0.436829 1_1:-47369942 Msa0024680:CDS
GGGGTGTTTAATGTTATTAG+AGG 0.438406 1_1:-47374801 Msa0024680:CDS
TTTGATTGGAAAACTGCAAA+AGG 0.443482 1_1:+47375231 None:intergenic
GAGTGATCTGACTTTGTTTG+AGG 0.444135 1_1:-47372039 Msa0024680:intron
GTTATTGGTGTAGGAGGTGG+TGG 0.444462 1_1:-47374477 Msa0024680:CDS
AGAAAGGGTAGTTCTAGTTT+GGG 0.447853 1_1:-47374567 Msa0024680:CDS
CCAATCTGCAGACGGTTCTC+AGG 0.448678 1_1:+47374354 None:intergenic
GTTATTAATAACATTGGTCT+AGG 0.449498 1_1:-47369834 Msa0024680:three_prime_UTR
AAACTAGAACTACCCTTTCT+CGG 0.450362 1_1:+47374570 None:intergenic
ATTCTTCGACAGGGCGTTCG+TGG 0.450765 1_1:-47372575 Msa0024680:CDS
GGAATTGTGTGGAACATAAC+TGG 0.451299 1_1:-47372065 Msa0024680:CDS
GGGTAGTTCTAGTTTGGGTG+AGG 0.451348 1_1:-47374562 Msa0024680:CDS
TCCAATGCTATAAATTCAGC+AGG 0.456266 1_1:-47374822 Msa0024680:CDS
GGTGGTGCTCCGATTATTGC+TGG 0.461113 1_1:-47372806 Msa0024680:CDS
TTTGCAACACCAGCAATAAT+CGG 0.461666 1_1:+47372797 None:intergenic
TCAGGATGCAGATGTAGAAA+AGG 0.462170 1_1:+47374636 None:intergenic
AAGGACGCTCACGCTATCCT+AGG 0.463769 1_1:-47369923 Msa0024680:CDS
CACGGTGAATGTTCCGAGAA+AGG 0.465295 1_1:-47374583 Msa0024680:CDS
ATTGGTATAGAGAGGGCTAC+TGG 0.466303 1_1:-47372086 Msa0024680:CDS
AAGATTAAAGTTATTGGTGT+AGG 0.467049 1_1:-47374486 Msa0024680:CDS
CCTTCCTCGTTCTCTGATGA+TGG 0.472648 1_1:-47369981 Msa0024680:CDS
CAATGGGTATACTGACTGTT+GGG 0.476043 1_1:-47372772 Msa0024680:CDS
AATGCTGGTTCTTCACTGAT+GGG 0.476321 1_1:-47372380 Msa0024680:CDS
CAAAGAAATGCACAGAGCAT+TGG 0.476789 1_1:+47369883 None:intergenic
AAAGTTATTGGTGTAGGAGG+TGG 0.478162 1_1:-47374480 Msa0024680:CDS
CCTGAGAACCGTCTGCAGAT+TGG 0.481006 1_1:-47374354 Msa0024680:CDS
ATTAAAGTTATTGGTGTAGG+AGG 0.483640 1_1:-47374483 Msa0024680:CDS
AAATCAACATTTACCATCCC+AGG 0.484005 1_1:+47372428 None:intergenic
TGCTGGTGTTGCAAAGTCAA+TGG 0.486003 1_1:-47372789 Msa0024680:CDS
GATTGAATGCTTCCGTTACA+GGG 0.488232 1_1:+47372609 None:intergenic
ATGGGGATAGGAACTGCAAC+TGG 0.490129 1_1:-47372362 Msa0024680:intron
CTTACTGAGTGCAGATCCCT+GGG 0.499177 1_1:-47372445 Msa0024680:intron
GAATATATGGAGAAAACTTA+GGG 0.505068 1_1:+47374907 None:intergenic
ACGGTGAATGTTCCGAGAAA+GGG 0.505569 1_1:-47374582 Msa0024680:CDS
AAGAGAAACCTGAGAAGTTG+TGG 0.506292 1_1:+47375202 None:intergenic
TTGCAGGCTGGAATGGGTGG+TGG 0.508649 1_1:-47372839 Msa0024680:intron
TAGTGAGAGTAATTACAATC+AGG 0.509905 1_1:-47374511 Msa0024680:CDS
GCAGATGTAGAAAAGGGTCT+TGG 0.517589 1_1:+47374643 None:intergenic
CTTATTCAAATATGTTAACA+AGG 0.520626 1_1:+47369706 None:intergenic
AATCGGAGCACCACCTGTGC+CGG 0.521073 1_1:+47372814 None:intergenic
TCAGGGGTTATTAATAACAT+TGG 0.523440 1_1:-47369840 Msa0024680:three_prime_UTR
GGTGGTGGAACCGGCACAGG+TGG 0.528595 1_1:-47372824 Msa0024680:CDS
TCTATACCAATATCCAGTAA+AGG 0.530736 1_1:+47372098 None:intergenic
ACATGAAGAGAAGCCGCTAC+AGG 0.534502 1_1:-47370131 Msa0024680:intron
TCAATGGGTATACTGACTGT+TGG 0.536448 1_1:-47372773 Msa0024680:CDS
TGTGTGTTCAAGGGAAAACA+AGG 0.539311 1_1:-47372154 Msa0024680:intron
CAGCATTCATTCCCATCTCA+GGG 0.540119 1_1:+47374295 None:intergenic
AGAGAAACCTGAGAAGTTGT+GGG 0.543504 1_1:+47375203 None:intergenic
CCTCTAAGCATCGAAACCTC+AGG 0.546323 1_1:+47374618 None:intergenic
CGAGCTATAATGGCCAATGC+TGG 0.546952 1_1:-47372395 Msa0024680:CDS
TACTGGATATTGGTATAGAG+AGG 0.547814 1_1:-47372094 Msa0024680:CDS
CAGAGAGTCGATTGAAGAGG+CGG 0.548139 1_1:-47374262 Msa0024680:CDS
CAGGATGCAGATGTAGAAAA+GGG 0.548436 1_1:+47374637 None:intergenic
GGTTCTTCACTGATGGGGAT+AGG 0.549568 1_1:-47372374 Msa0024680:CDS
CATCAGTGAAGAACCAGCAT+TGG 0.554126 1_1:+47372382 None:intergenic
GCAGAAGAGTATTAAACCCT+AGG 0.555930 1_1:+47369906 None:intergenic
ACAGACTAGTCAGCTCACTC+AGG 0.564624 1_1:-47370033 Msa0024680:intron
GCTGGTGTTGCAAAGTCAAT+GGG 0.565632 1_1:-47372788 Msa0024680:CDS
TTCTCAATCTACCCCTGTAA+CGG 0.573127 1_1:-47372621 Msa0024680:CDS
AGATATATCCCCTAAGCTCT+CGG 0.575625 1_1:+47374533 None:intergenic
AGATCCATTCAAGCACAAGA+AGG 0.582161 1_1:-47372713 Msa0024680:CDS
CTTACGCGAGGTCTTGGAGC+TGG 0.582616 1_1:-47374324 Msa0024680:CDS
ATGATAGAGAGTTCGATGCA+TGG 0.590175 1_1:-47374435 Msa0024680:CDS
AGGACGCTCACGCTATCCTA+GGG 0.592290 1_1:-47369922 Msa0024680:CDS
ACTGGATATTGGTATAGAGA+GGG 0.593490 1_1:-47372093 Msa0024680:CDS
AAATGAACAATGAGCAAAGG+TGG 0.595670 1_1:-47375271 Msa0024680:exon
GATTTGAATTATACCTGTAG+CGG 0.605507 1_1:+47370118 None:intergenic
AGCTGGTGGTAACCCTGAGA+TGG 0.605521 1_1:-47374307 Msa0024680:CDS
AAGCAGAGAGTCGATTGAAG+AGG 0.606090 1_1:-47374265 Msa0024680:CDS
ACGCGAGGTCTTGGAGCTGG+TGG 0.612340 1_1:-47374321 Msa0024680:CDS
TAGAGGTGAGGCGAGTAGCA+CGG 0.614398 1_1:-47374601 Msa0024680:CDS
CTTACTTGACCAGTAAGTGA+AGG 0.622903 1_1:+47370976 None:intergenic
CTGAGTGCAGATCCCTGGGA+TGG 0.627247 1_1:-47372441 Msa0024680:intron
ATGCTGGTTCTTCACTGATG+GGG 0.629953 1_1:-47372379 Msa0024680:CDS
CCATCATCAGAGAACGAGGA+AGG 0.634743 1_1:+47369981 None:intergenic
CCAATGCTATAAATTCAGCA+GGG 0.638400 1_1:-47374821 Msa0024680:CDS
GGTTTCGATGCTTAGAGGTG+AGG 0.639570 1_1:-47374613 Msa0024680:CDS
GCTGGTGGTAACCCTGAGAT+GGG 0.642398 1_1:-47374306 Msa0024680:CDS
AACCGGATTCAAGCGTCAAG+AGG 0.644965 1_1:-47370155 Msa0024680:CDS
AATCAACATTTACCATCCCA+GGG 0.657201 1_1:+47372429 None:intergenic
ATTGAATGCTTCCGTTACAG+GGG 0.665540 1_1:+47372610 None:intergenic
CAGACTAGTCAGCTCACTCA+GGG 0.667175 1_1:-47370032 Msa0024680:CDS
GCTGATGATATTCTTCGACA+GGG 0.667848 1_1:-47372584 Msa0024680:CDS
GTGTGTTCAAGGGAAAACAA+GGG 0.669673 1_1:-47372153 Msa0024680:intron
AGAGGGCTACTGGAATTGTG+TGG 0.670337 1_1:-47372076 Msa0024680:CDS
CAATGCTATAAATTCAGCAG+GGG 0.676383 1_1:-47374820 Msa0024680:CDS
GGATTTGTCCGAGAGCTTAG+GGG 0.679587 1_1:-47374541 Msa0024680:CDS
AGAAGTTATCTACGACCTCG+TGG 0.681487 1_1:-47371037 Msa0024680:CDS
GTTCCAAACCAATCTGCAGA+CGG 0.682388 1_1:+47374346 None:intergenic
TTGTGTGGAACATAACTGGT+GGG 0.692106 1_1:-47372061 Msa0024680:CDS
ACTACCATCATCAGAGAACG+AGG 0.692979 1_1:+47369977 None:intergenic
AGACGGTTCTCAGGAAACAC+AGG 0.693113 1_1:+47374363 None:intergenic
ATTGGTTTGGAACTTACGCG+AGG 0.698954 1_1:-47374336 Msa0024680:CDS
AGGAGGTGGTGGATCTAACG+CGG 0.701552 1_1:-47374466 Msa0024680:CDS
AATTAGCACTAGGGTCCACG+AGG 0.745457 1_1:+47371022 None:intergenic
ATTGTGTGGAACATAACTGG+TGG 0.767709 1_1:-47372062 Msa0024680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAATTATATTTTACATT+AGG - chr1_1:47370707-47370726 Msa0024680:intron 10.0%
!! TACAAAATTATAAAAGAAAA+TGG - chr1_1:47371743-47371762 Msa0024680:intron 10.0%
!! CTAATTAATTATTCAATTAA+AGG - chr1_1:47373162-47373181 Msa0024680:intron 10.0%
!! TACTCTAATAAATATTAAAA+TGG - chr1_1:47373255-47373274 Msa0024680:intron 10.0%
!!! AAGTTTTTTTTTTCATAAAA+AGG + chr1_1:47375282-47375301 None:intergenic 10.0%
!! TTATACACAAAAAATGAAAT+TGG + chr1_1:47369829-47369848 None:intergenic 15.0%
!! TAATGATAGTTTAACATTAA+TGG - chr1_1:47369869-47369888 Msa0024680:three_prime_UTR 15.0%
!! AATGATAGTTTAACATTAAT+GGG - chr1_1:47369870-47369889 Msa0024680:three_prime_UTR 15.0%
!!! AAAAATTTTGATAGCAAAAT+TGG - chr1_1:47370131-47370150 Msa0024680:intron 15.0%
!! AAATATTAGTATATGTGTTA+GGG - chr1_1:47370782-47370801 Msa0024680:intron 15.0%
!!! TTTCAGTTTTCATTTTTTAA+AGG - chr1_1:47371374-47371393 Msa0024680:intron 15.0%
!!! TTCAGTTTTCATTTTTTAAA+GGG - chr1_1:47371375-47371394 Msa0024680:intron 15.0%
!!! AACACAAGATAATATTTTTT+TGG + chr1_1:47371874-47371893 None:intergenic 15.0%
!!! TCCAAATTTTGAAAAATTTA+GGG + chr1_1:47371944-47371963 None:intergenic 15.0%
!!! TTCCAAATTTTGAAAAATTT+AGG + chr1_1:47371945-47371964 None:intergenic 15.0%
!!! TCATTTTAATTTTCAAGTTT+AGG + chr1_1:47372015-47372034 None:intergenic 15.0%
!!! TTTTGAACTTCATATATTAT+TGG - chr1_1:47372680-47372699 Msa0024680:CDS 15.0%
!! ATTAATTATTCAATTAAAGG+AGG - chr1_1:47373165-47373184 Msa0024680:intron 15.0%
!! CAATCAAGATTAAATAAAAT+AGG - chr1_1:47373231-47373250 Msa0024680:intron 15.0%
!! ACTAATTGCAATATAAAATA+TGG + chr1_1:47373572-47373591 None:intergenic 15.0%
!! AATCATTTATGAATTTCTTA+TGG + chr1_1:47374137-47374156 None:intergenic 15.0%
!! AATTCATAAATGATTTGAAA+TGG - chr1_1:47374142-47374161 Msa0024680:intron 15.0%
!! TCATTTGATGAATATATAAT+CGG - chr1_1:47374451-47374470 Msa0024680:CDS 15.0%
!! TTAAGTCACTAATAACAAAA+GGG + chr1_1:47369852-47369871 None:intergenic 20.0%
!! ATTAAGTCACTAATAACAAA+AGG + chr1_1:47369853-47369872 None:intergenic 20.0%
!! TGCATTTAAGCAAAAATAAA+AGG + chr1_1:47369898-47369917 None:intergenic 20.0%
!! TGTTCAATTAATTCCAATAA+TGG - chr1_1:47370197-47370216 Msa0024680:intron 20.0%
!! TATTTGTAAATCATGTACAA+CGG + chr1_1:47370767-47370786 None:intergenic 20.0%
!! CAAATATTAGTATATGTGTT+AGG - chr1_1:47370781-47370800 Msa0024680:intron 20.0%
!! TAAAATAAGTCAATGTTTGA+GGG + chr1_1:47370815-47370834 None:intergenic 20.0%
!! ATAAAATAAGTCAATGTTTG+AGG + chr1_1:47370816-47370835 None:intergenic 20.0%
!! TAGTACAAAATATCAAATAG+CGG - chr1_1:47370931-47370950 Msa0024680:intron 20.0%
!! TCTGATATCAAATACAAATT+TGG - chr1_1:47371216-47371235 Msa0024680:intron 20.0%
!! AATACAAATTTGGTTATTTG+TGG - chr1_1:47371226-47371245 Msa0024680:intron 20.0%
!!! ATATTTTCTGAAAGAAAACA+GGG + chr1_1:47371354-47371373 None:intergenic 20.0%
!!! AATATTTTCTGAAAGAAAAC+AGG + chr1_1:47371355-47371374 None:intergenic 20.0%
!!! GGTAAGATTTTATTAAAAAG+TGG + chr1_1:47371502-47371521 None:intergenic 20.0%
!!! ATTTTCAGAAACTTTCAAAA+TGG + chr1_1:47371710-47371729 None:intergenic 20.0%
!! AATTATAAAAGAAAATGGTG+AGG - chr1_1:47371748-47371767 Msa0024680:intron 20.0%
!!! ACAAGATAATATTTTTTTGG+TGG + chr1_1:47371871-47371890 None:intergenic 20.0%
!! TTATCTTGTGTTTATTAGTA+AGG - chr1_1:47371882-47371901 Msa0024680:intron 20.0%
!! TATCTTGTGTTTATTAGTAA+GGG - chr1_1:47371883-47371902 Msa0024680:intron 20.0%
!!! ACCCTAAATTTTTCAAAATT+TGG - chr1_1:47371940-47371959 Msa0024680:intron 20.0%
!!! AAATTAAAATGAACTTTTGC+AGG - chr1_1:47372023-47372042 Msa0024680:intron 20.0%
!! TAATATTGAAGTGCAATTTA+AGG - chr1_1:47372612-47372631 Msa0024680:CDS 20.0%
!! AAAAAAAAAAAGAACAGCAT+GGG + chr1_1:47372915-47372934 None:intergenic 20.0%
!! AAAAAAAAAAAAGAACAGCA+TGG + chr1_1:47372916-47372935 None:intergenic 20.0%
!! TAAAAAAACAACAAAGAGAT+GGG + chr1_1:47372939-47372958 None:intergenic 20.0%
!!! TGTTTCAAATTTTAAAGGAA+CGG + chr1_1:47372976-47372995 None:intergenic 20.0%
!! GATTCAAATTTAATAGACAA+GGG + chr1_1:47373039-47373058 None:intergenic 20.0%
!! AGATTCAAATTTAATAGACA+AGG + chr1_1:47373040-47373059 None:intergenic 20.0%
!! AGAAACATTTAAAGAAATCA+AGG + chr1_1:47373201-47373220 None:intergenic 20.0%
!! TAATAAATATTAAAATGGCC+TGG - chr1_1:47373260-47373279 Msa0024680:intron 20.0%
!! AAAAACTATTGCATACAAAA+GGG + chr1_1:47373790-47373809 None:intergenic 20.0%
!! TAAAAACTATTGCATACAAA+AGG + chr1_1:47373791-47373810 None:intergenic 20.0%
!!! TTTTTAATAGAATCGTTTAC+AGG - chr1_1:47373805-47373824 Msa0024680:intron 20.0%
!! CAAAAATTAAATTAGCACTA+GGG + chr1_1:47373868-47373887 None:intergenic 20.0%
!! TAAATTGCACAATTCATAAA+CGG + chr1_1:47374028-47374047 None:intergenic 20.0%
!!! AAGTATTTATTTTTTCCGTT+TGG + chr1_1:47374349-47374368 None:intergenic 20.0%
!! GTAAAAAAGATTTACATTGT+CGG - chr1_1:47374613-47374632 Msa0024680:CDS 20.0%
!! CTATATTAAATCAAATGACA+TGG + chr1_1:47374683-47374702 None:intergenic 20.0%
!!! CATGTCATTTGATTTAATAT+AGG - chr1_1:47374681-47374700 Msa0024680:CDS 20.0%
!! TGAAGTAAAAAATAATGCAT+TGG + chr1_1:47375021-47375040 None:intergenic 20.0%
!!! AATGCATTATTTTTTACTTC+AGG - chr1_1:47375020-47375039 Msa0024680:intron 20.0%
!!! ATGCATTATTTTTTACTTCA+GGG - chr1_1:47375021-47375040 Msa0024680:intron 20.0%
!! CTTATTCAAATATGTTAACA+AGG + chr1_1:47375175-47375194 None:intergenic 20.0%
! AAAAAATGAACAATGAGCAA+AGG - chr1_1:47369604-47369623 Msa0024680:three_prime_UTR 25.0%
! AAAAAGAGTAAACAACATTG+CGG + chr1_1:47369731-47369750 None:intergenic 25.0%
! TTGGTGAAATAACAAATAGT+TGG + chr1_1:47369810-47369829 None:intergenic 25.0%
!!! TTATTTTTGCTTAAATGCAC+AGG - chr1_1:47369899-47369918 Msa0024680:exon 25.0%
!!! GTTTTGGAAGAAAATTTTCT+GGG - chr1_1:47369921-47369940 Msa0024680:CDS 25.0%
!! AAGAAAATTTTCTGGGTAAA+TGG - chr1_1:47369928-47369947 Msa0024680:CDS 25.0%
!! AATGGAAAGTTTGAATCTTT+TGG - chr1_1:47369946-47369965 Msa0024680:CDS 25.0%
!! ATGGAAAGTTTGAATCTTTT+GGG - chr1_1:47369947-47369966 Msa0024680:CDS 25.0%
! GAATATATGGAGAAAACTTA+GGG + chr1_1:47369974-47369993 None:intergenic 25.0%
! TGAATATATGGAGAAAACTT+AGG + chr1_1:47369975-47369994 None:intergenic 25.0%
!! CCATTTTGAACTTCAAAATT+GGG + chr1_1:47370007-47370026 None:intergenic 25.0%
!! ACCATTTTGAACTTCAAAAT+TGG + chr1_1:47370008-47370027 None:intergenic 25.0%
!! GATAGCAAAATTGGATTTTT+AGG - chr1_1:47370140-47370159 Msa0024680:CDS 25.0%
! ATGATATGAACTACCATTAT+TGG + chr1_1:47370213-47370232 None:intergenic 25.0%
! AAGATTAAAGTTATTGGTGT+AGG - chr1_1:47370392-47370411 Msa0024680:intron 25.0%
!! GGAGTTTTCTTAGTATTTAT+CGG - chr1_1:47370728-47370747 Msa0024680:intron 25.0%
!! ATTAGTTTCCTTTAAAGACA+AGG - chr1_1:47371287-47371306 Msa0024680:intron 25.0%
!! TTAGTTTCCTTTAAAGACAA+GGG - chr1_1:47371288-47371307 Msa0024680:intron 25.0%
!! CAAGACAATTTTTCTACTTT+TGG + chr1_1:47371440-47371459 None:intergenic 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG - chr1_1:47371438-47371457 Msa0024680:intron 25.0%
! ACATGAATACAAGAAGTAAA+CGG - chr1_1:47371917-47371936 Msa0024680:intron 25.0%
! AAATAAAAGCAGTGTAGAAT+TGG + chr1_1:47372582-47372601 None:intergenic 25.0%
! CTAAAAAAACAACAAAGAGA+TGG + chr1_1:47372940-47372959 None:intergenic 25.0%
!! CACGATGTTTCAAATTTTAA+AGG + chr1_1:47372981-47373000 None:intergenic 25.0%
!!! CTTTAAAATTTGAAACATCG+TGG - chr1_1:47372979-47372998 Msa0024680:intron 25.0%
! GAAATCAGTATGTACTATTT+AGG - chr1_1:47373408-47373427 Msa0024680:intron 25.0%
!! CAATTAGTATGAATTTTCTG+TGG - chr1_1:47373584-47373603 Msa0024680:intron 25.0%
! TTCACAGAAAAGTAAAACTA+TGG + chr1_1:47373669-47373688 None:intergenic 25.0%
! CCAAAAATTAAATTAGCACT+AGG + chr1_1:47373869-47373888 None:intergenic 25.0%
!!! CCTAGTGCTAATTTAATTTT+TGG - chr1_1:47373866-47373885 Msa0024680:intron 25.0%
! TGCTAAACACTATTATAACT+AGG + chr1_1:47374098-47374117 None:intergenic 25.0%
!! CTTTTCTCTGAATATTACTT+GGG + chr1_1:47374324-47374343 None:intergenic 25.0%
!!! TATTTTGTTTAGCTGGTATT+TGG - chr1_1:47374408-47374427 Msa0024680:CDS 25.0%
!!! ATTTTGTTTAGCTGGTATTT+GGG - chr1_1:47374409-47374428 Msa0024680:CDS 25.0%
! GTGAATGAATTAAATCCATA+TGG - chr1_1:47374637-47374656 Msa0024680:CDS 25.0%
! ATCAGAATTATGAGTATGAA+TGG + chr1_1:47374812-47374831 None:intergenic 25.0%
!!! TGCATTATTTTTTACTTCAG+GGG - chr1_1:47375022-47375041 Msa0024680:intron 25.0%
!! GTTATTAATAACATTGGTCT+AGG - chr1_1:47375044-47375063 Msa0024680:intron 25.0%
!!! ATTAGCTTGTATTCTTGTAT+AGG - chr1_1:47375198-47375217 Msa0024680:intron 25.0%
!!! TTAGCTTGTATTCTTGTATA+GGG - chr1_1:47375199-47375218 Msa0024680:intron 25.0%
! AAGGAAAATGTTCATAAAAC+AGG + chr1_1:47375263-47375282 None:intergenic 25.0%
! GAAAACTGCAAAAGGTTTTA+CGG + chr1_1:47369642-47369661 None:intergenic 30.0%
TTTGATTGGAAAACTGCAAA+AGG + chr1_1:47369650-47369669 None:intergenic 30.0%
!!! GGTTTTGGAAGAAAATTTTC+TGG - chr1_1:47369920-47369939 Msa0024680:CDS 30.0%
GGGATATGTAAGTGAATATA+TGG + chr1_1:47369987-47370006 None:intergenic 30.0%
!!! CCCAATTTTGAAGTTCAAAA+TGG - chr1_1:47370004-47370023 Msa0024680:CDS 30.0%
TAGTGAGAGTAATTACAATC+AGG - chr1_1:47370367-47370386 Msa0024680:intron 30.0%
ATTAAAGTTATTGGTGTAGG+AGG - chr1_1:47370395-47370414 Msa0024680:intron 30.0%
AGCTACTATATGACATCATT+GGG + chr1_1:47370886-47370905 None:intergenic 30.0%
TAGCTACTATATGACATCAT+TGG + chr1_1:47370887-47370906 None:intergenic 30.0%
AGTTATCAGTAGTTCAATCA+AGG + chr1_1:47371031-47371050 None:intergenic 30.0%
ATTGGTTAAGCAGTTAAAAC+GGG + chr1_1:47371523-47371542 None:intergenic 30.0%
! CATTGGTTAAGCAGTTAAAA+CGG + chr1_1:47371524-47371543 None:intergenic 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr1_1:47371633-47371652 Msa0024680:intron 30.0%
TAGAGAAAAGATGGAATGAA+AGG - chr1_1:47371642-47371661 Msa0024680:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr1_1:47371830-47371849 Msa0024680:intron 30.0%
!!! AATATTTTTTTGGTGGTGTC+CGG + chr1_1:47371864-47371883 None:intergenic 30.0%
TTCGTCCTTCAAATGAAAAA+GGG + chr1_1:47372143-47372162 None:intergenic 30.0%
TTTCGTCCTTCAAATGAAAA+AGG + chr1_1:47372144-47372163 None:intergenic 30.0%
AAAGATAATGCATGAACAAC+AGG + chr1_1:47372376-47372395 None:intergenic 30.0%
!!! TGACATTTTTTGTGTGTTCA+AGG - chr1_1:47372714-47372733 Msa0024680:CDS 30.0%
!!! GACATTTTTTGTGTGTTCAA+GGG - chr1_1:47372715-47372734 Msa0024680:CDS 30.0%
TCTATACCAATATCCAGTAA+AGG + chr1_1:47372783-47372802 None:intergenic 30.0%
!! TCAAATTTTAAAGGAACGGA+GGG + chr1_1:47372972-47372991 None:intergenic 30.0%
!! TTCAAATTTTAAAGGAACGG+AGG + chr1_1:47372973-47372992 None:intergenic 30.0%
TCAAATTTAATAGACAAGGG+TGG + chr1_1:47373036-47373055 None:intergenic 30.0%
CAAAATATGAAAAGGAAACC+TGG + chr1_1:47373098-47373117 None:intergenic 30.0%
! CAGGTTTCCTTTTCATATTT+TGG - chr1_1:47373096-47373115 Msa0024680:intron 30.0%
TAAATATTAAAATGGCCTGG+TGG - chr1_1:47373263-47373282 Msa0024680:intron 30.0%
TCTTATAGTCATGTATCCAT+TGG - chr1_1:47373535-47373554 Msa0024680:intron 30.0%
TATGGAAGACATTATTCCAA+TGG + chr1_1:47373554-47373573 None:intergenic 30.0%
TCTGTCTATTAAACTCATCA+TGG - chr1_1:47373754-47373773 Msa0024680:intron 30.0%
ACAAGTGTATAAAGATCAGT+AGG - chr1_1:47374170-47374189 Msa0024680:intron 30.0%
! CTTTGAGGACTAAATATTTG+TGG + chr1_1:47374261-47374280 None:intergenic 30.0%
! AATGTCCTTTTATCACTCTA+TGG - chr1_1:47374289-47374308 Msa0024680:CDS 30.0%
! TGAATATTACTTGGGTTTTG+TGG + chr1_1:47374316-47374335 None:intergenic 30.0%
! CCTTTTCTCTGAATATTACT+TGG + chr1_1:47374325-47374344 None:intergenic 30.0%
CCAAGTAATATTCAGAGAAA+AGG - chr1_1:47374322-47374341 Msa0024680:CDS 30.0%
CCAGCTAAACAAAATATAAC+CGG + chr1_1:47374404-47374423 None:intergenic 30.0%
!! TTTTGTTTAGCTGGTATTTG+GGG - chr1_1:47374410-47374429 Msa0024680:CDS 30.0%
CATGTTGATCATATTCCATA+TGG + chr1_1:47374655-47374674 None:intergenic 30.0%
CATATGGAATATGATCAACA+TGG - chr1_1:47374653-47374672 Msa0024680:CDS 30.0%
AGCATAACATTAATTGCAAC+CGG - chr1_1:47374706-47374725 Msa0024680:CDS 30.0%
GATTTGAATTATACCTGTAG+CGG + chr1_1:47374763-47374782 None:intergenic 30.0%
AATTATGAGTATGAATGGCA+TGG + chr1_1:47374807-47374826 None:intergenic 30.0%
! CCTTTCTTCTTTAAGAAATC+AGG + chr1_1:47374939-47374958 None:intergenic 30.0%
CCTGATTTCTTAAAGAAGAA+AGG - chr1_1:47374936-47374955 Msa0024680:CDS 30.0%
TCAGGGGTTATTAATAACAT+TGG - chr1_1:47375038-47375057 Msa0024680:intron 30.0%
! AAGAGTTGTTCATACAGTTT+TGG - chr1_1:47375108-47375127 Msa0024680:intron 30.0%
!! CAGAGCTTGTTATAATTCTT+TGG - chr1_1:47375237-47375256 Msa0024680:CDS 30.0%
AAATGAACAATGAGCAAAGG+TGG - chr1_1:47369607-47369626 Msa0024680:three_prime_UTR 35.0%
! GAGAATGAAGAAAGCGTAAT+TGG + chr1_1:47369709-47369728 None:intergenic 35.0%
! TTGCTTAAATGCACAGGTTT+TGG - chr1_1:47369905-47369924 Msa0024680:exon 35.0%
TCCAATGCTATAAATTCAGC+AGG - chr1_1:47370056-47370075 Msa0024680:intron 35.0%
CCAATGCTATAAATTCAGCA+GGG - chr1_1:47370057-47370076 Msa0024680:intron 35.0%
CAATGCTATAAATTCAGCAG+GGG - chr1_1:47370058-47370077 Msa0024680:intron 35.0%
! GGGGTGTTTAATGTTATTAG+AGG - chr1_1:47370077-47370096 Msa0024680:intron 35.0%
TTAGGTAGTGAGAGAAAGTT+AGG - chr1_1:47370158-47370177 Msa0024680:CDS 35.0%
AAACTAGAACTACCCTTTCT+CGG + chr1_1:47370311-47370330 None:intergenic 35.0%
!! AGAAAGGGTAGTTCTAGTTT+GGG - chr1_1:47370311-47370330 Msa0024680:intron 35.0%
CAGGCGAAGATTAAAGTTAT+TGG - chr1_1:47370386-47370405 Msa0024680:intron 35.0%
TTCAAATGTTGCTGTGAAGT+AGG + chr1_1:47370979-47370998 None:intergenic 35.0%
CAATACCTCGTTATACAGTA+GGG - chr1_1:47371089-47371108 Msa0024680:intron 35.0%
TGTTGATCCCTTGTCTTTAA+AGG + chr1_1:47371298-47371317 None:intergenic 35.0%
!!! ATATTTTTTTGGTGGTGTCC+GGG + chr1_1:47371863-47371882 None:intergenic 35.0%
! TAAAATGAACTTTTGCAGGC+TGG - chr1_1:47372027-47372046 Msa0024680:intron 35.0%
TTTGCAACACCAGCAATAAT+CGG + chr1_1:47372084-47372103 None:intergenic 35.0%
TCGTCCTTCAAATGAAAAAG+GGG + chr1_1:47372142-47372161 None:intergenic 35.0%
AATTCCTTCTTGTGCTTGAA+TGG + chr1_1:47372172-47372191 None:intergenic 35.0%
! GCAGTTAATAGCTTGTCATT+TGG + chr1_1:47372234-47372253 None:intergenic 35.0%
AATCAACATTTACCATCCCA+GGG + chr1_1:47372452-47372471 None:intergenic 35.0%
AAATCAACATTTACCATCCC+AGG + chr1_1:47372453-47372472 None:intergenic 35.0%
TGCTGATATTCGAGCTATAA+TGG - chr1_1:47372473-47372492 Msa0024680:intron 35.0%
TACTGGATATTGGTATAGAG+AGG - chr1_1:47372784-47372803 Msa0024680:CDS 35.0%
ACTGGATATTGGTATAGAGA+GGG - chr1_1:47372785-47372804 Msa0024680:CDS 35.0%
! TTTGAAACATCGTGGTACTA+TGG - chr1_1:47372987-47373006 Msa0024680:intron 35.0%
TTGAAACATCGTGGTACTAT+GGG - chr1_1:47372988-47373007 Msa0024680:intron 35.0%
TAATAGACAAGGGTGGATAT+AGG + chr1_1:47373029-47373048 None:intergenic 35.0%
CCACATGCCAAAATATGAAA+AGG + chr1_1:47373106-47373125 None:intergenic 35.0%
!!! CCTTTTCATATTTTGGCATG+TGG - chr1_1:47373103-47373122 Msa0024680:intron 35.0%
! TTGCAAACTTCGACTTTTGT+TGG - chr1_1:47373694-47373713 Msa0024680:intron 35.0%
TTGGAGCTAATACTTGTTTG+AGG - chr1_1:47373713-47373732 Msa0024680:intron 35.0%
GTAATAGATCCTTCACTTAC+TGG - chr1_1:47373893-47373912 Msa0024680:intron 35.0%
TTGCACAATTCATAAACGGT+GGG + chr1_1:47374024-47374043 None:intergenic 35.0%
ATTGCACAATTCATAAACGG+TGG + chr1_1:47374025-47374044 None:intergenic 35.0%
TGTGCAATTTACAGCATTTC+CGG - chr1_1:47374037-47374056 Msa0024680:intron 35.0%
ATAAAGATCAGTAGGTAGCT+CGG - chr1_1:47374178-47374197 Msa0024680:intron 35.0%
! GGACATTCTCTATTTCTTTG+AGG + chr1_1:47374276-47374295 None:intergenic 35.0%
ATTCAGAGAAAAGGACCAAA+CGG - chr1_1:47374331-47374350 Msa0024680:CDS 35.0%
!! CCGGTTATATTTTGTTTAGC+TGG - chr1_1:47374401-47374420 Msa0024680:CDS 35.0%
! AAAGAAATGCACAGAGCATT+GGG + chr1_1:47374997-47375016 None:intergenic 35.0%
!! AGTTGTGGGAAGCATTTGAT+TGG + chr1_1:47369664-47369683 None:intergenic 40.0%
AGAGAAACCTGAGAAGTTGT+GGG + chr1_1:47369678-47369697 None:intergenic 40.0%
AAGAGAAACCTGAGAAGTTG+TGG + chr1_1:47369679-47369698 None:intergenic 40.0%
CCCTGCTGAATTTATAGCAT+TGG + chr1_1:47370060-47370079 None:intergenic 40.0%
CAGGATGCAGATGTAGAAAA+GGG + chr1_1:47370244-47370263 None:intergenic 40.0%
TCAGGATGCAGATGTAGAAA+AGG + chr1_1:47370245-47370264 None:intergenic 40.0%
! TTTTCTACATCTGCATCCTG+AGG - chr1_1:47370244-47370263 Msa0024680:intron 40.0%
!! GAGAAAGGGTAGTTCTAGTT+TGG - chr1_1:47370310-47370329 Msa0024680:intron 40.0%
AGATATATCCCCTAAGCTCT+CGG + chr1_1:47370348-47370367 None:intergenic 40.0%
AAAGTTATTGGTGTAGGAGG+TGG - chr1_1:47370398-47370417 Msa0024680:intron 40.0%
ATGATAGAGAGTTCGATGCA+TGG - chr1_1:47370443-47370462 Msa0024680:intron 40.0%
CGAGTGCTTTATGCTATGTT+AGG - chr1_1:47371066-47371085 Msa0024680:intron 40.0%
GCAATACCTCGTTATACAGT+AGG - chr1_1:47371088-47371107 Msa0024680:intron 40.0%
ATTGTCCCTACTGTATAACG+AGG + chr1_1:47371097-47371116 None:intergenic 40.0%
! GGTGTTTCTTTTAGTAGTGC+AGG - chr1_1:47371247-47371266 Msa0024680:intron 40.0%
! GTTTCTTTTAGTAGTGCAGG+AGG - chr1_1:47371250-47371269 Msa0024680:intron 40.0%
AGTAGATGAAAGACTCGTGT+AGG - chr1_1:47371607-47371626 Msa0024680:intron 40.0%
GTAGATGAAAGACTCGTGTA+GGG - chr1_1:47371608-47371627 Msa0024680:intron 40.0%
TATATGCAAGGTTCAAACCC+CGG - chr1_1:47371842-47371861 Msa0024680:intron 40.0%
!!! TATTTTTTTGGTGGTGTCCG+GGG + chr1_1:47371862-47371881 None:intergenic 40.0%
! TCAATGGGTATACTGACTGT+TGG - chr1_1:47372105-47372124 Msa0024680:CDS 40.0%
! CAATGGGTATACTGACTGTT+GGG - chr1_1:47372106-47372125 Msa0024680:CDS 40.0%
!! ACGACCCCTTTTTCATTTGA+AGG - chr1_1:47372135-47372154 Msa0024680:CDS 40.0%
AGATCCATTCAAGCACAAGA+AGG - chr1_1:47372165-47372184 Msa0024680:intron 40.0%
TTCTCAATCTACCCCTGTAA+CGG - chr1_1:47372257-47372276 Msa0024680:intron 40.0%
ATTGAATGCTTCCGTTACAG+GGG + chr1_1:47372271-47372290 None:intergenic 40.0%
GATTGAATGCTTCCGTTACA+GGG + chr1_1:47372272-47372291 None:intergenic 40.0%
AGATTGAATGCTTCCGTTAC+AGG + chr1_1:47372273-47372292 None:intergenic 40.0%
TGCTGATGATATTCTTCGAC+AGG - chr1_1:47372293-47372312 Msa0024680:intron 40.0%
GCTGATGATATTCTTCGACA+GGG - chr1_1:47372294-47372313 Msa0024680:intron 40.0%
!! AATGCTGGTTCTTCACTGAT+GGG - chr1_1:47372498-47372517 Msa0024680:intron 40.0%
! AGGCTCTTTTCTGCAATTGT+TGG - chr1_1:47372632-47372651 Msa0024680:CDS 40.0%
TGTGTGTTCAAGGGAAAACA+AGG - chr1_1:47372724-47372743 Msa0024680:CDS 40.0%
GTGTGTTCAAGGGAAAACAA+GGG - chr1_1:47372725-47372744 Msa0024680:CDS 40.0%
TGCTATTCAGTCTCCTTTAC+TGG - chr1_1:47372767-47372786 Msa0024680:CDS 40.0%
CAGTCTCCTTTACTGGATAT+TGG - chr1_1:47372774-47372793 Msa0024680:CDS 40.0%
GGAATTGTGTGGAACATAAC+TGG - chr1_1:47372813-47372832 Msa0024680:CDS 40.0%
ATTGTGTGGAACATAACTGG+TGG - chr1_1:47372816-47372835 Msa0024680:CDS 40.0%
TTGTGTGGAACATAACTGGT+GGG - chr1_1:47372817-47372836 Msa0024680:CDS 40.0%
! GAGTGATCTGACTTTGTTTG+AGG - chr1_1:47372839-47372858 Msa0024680:intron 40.0%
! ATCTGACTTTGTTTGAGGTG+AGG - chr1_1:47372844-47372863 Msa0024680:intron 40.0%
! TCTGACTTTGTTTGAGGTGA+GGG - chr1_1:47372845-47372864 Msa0024680:intron 40.0%
GCACAGCTGAAACATATACT+TGG + chr1_1:47372893-47372912 None:intergenic 40.0%
TATACTCTTCTCATGAAGCC+AGG - chr1_1:47373077-47373096 Msa0024680:intron 40.0%
CTTACTTGACCAGTAAGTGA+AGG + chr1_1:47373905-47373924 None:intergenic 40.0%
ATTCATAAACGGTGGGATAG+TGG + chr1_1:47374017-47374036 None:intergenic 40.0%
GTGCAATTTACAGCATTTCC+GGG - chr1_1:47374038-47374057 Msa0024680:intron 40.0%
CCGATTATCTTCTTCTCCTA+GGG + chr1_1:47374067-47374086 None:intergenic 40.0%
CCCTAGGAGAAGAAGATAAT+CGG - chr1_1:47374064-47374083 Msa0024680:intron 40.0%
CATCGAAATGATTCGATCTC+TGG - chr1_1:47374217-47374236 Msa0024680:intron 40.0%
GTGGTCCATAGAGTGATAAA+AGG + chr1_1:47374297-47374316 None:intergenic 40.0%
ATGAGTATGAATGGCATGGA+TGG + chr1_1:47374803-47374822 None:intergenic 40.0%
!! GCAGAAGAGTATTAAACCCT+AGG + chr1_1:47374975-47374994 None:intergenic 40.0%
CAAAGAAATGCACAGAGCAT+TGG + chr1_1:47374998-47375017 None:intergenic 40.0%
AATGCTTCCCACAACTTCTC+AGG - chr1_1:47369668-47369687 Msa0024680:three_prime_UTR 45.0%
GCAGATGTAGAAAAGGGTCT+TGG + chr1_1:47370238-47370257 None:intergenic 45.0%
ACGGTGAATGTTCCGAGAAA+GGG - chr1_1:47370296-47370315 Msa0024680:intron 45.0%
AGGATTTGTCCGAGAGCTTA+GGG - chr1_1:47370336-47370355 Msa0024680:intron 45.0%
! CGATGCATGGAGTTGAGTTT+TGG - chr1_1:47370456-47370475 Msa0024680:intron 45.0%
GTTCCAAACCAATCTGCAGA+CGG + chr1_1:47370535-47370554 None:intergenic 45.0%
!! ATTGGTTTGGAACTTACGCG+AGG - chr1_1:47370542-47370561 Msa0024680:intron 45.0%
CAGCATTCATTCCCATCTCA+GGG + chr1_1:47370586-47370605 None:intergenic 45.0%
AAGCAGAGAGTCGATTGAAG+AGG - chr1_1:47370613-47370632 Msa0024680:intron 45.0%
TCGATTGAAGAGGCGGTTTA+TGG - chr1_1:47370623-47370642 Msa0024680:intron 45.0%
! TCAAAGAGCTCTAGTGAGAG+AGG + chr1_1:47370850-47370869 None:intergenic 45.0%
AAGTAGGACTACAGGGCTAT+AGG + chr1_1:47370963-47370982 None:intergenic 45.0%
TGCTGTGAAGTAGGACTACA+GGG + chr1_1:47370970-47370989 None:intergenic 45.0%
TTGCTGTGAAGTAGGACTAC+AGG + chr1_1:47370971-47370990 None:intergenic 45.0%
! ATTTGGAACAGACGTGCTTG+CGG - chr1_1:47371957-47371976 Msa0024680:intron 45.0%
! TGAACTTTTGCAGGCTGGAA+TGG - chr1_1:47372032-47372051 Msa0024680:intron 45.0%
! GAACTTTTGCAGGCTGGAAT+GGG - chr1_1:47372033-47372052 Msa0024680:intron 45.0%
!! TGCTGGTGTTGCAAAGTCAA+TGG - chr1_1:47372089-47372108 Msa0024680:CDS 45.0%
!! GCTGGTGTTGCAAAGTCAAT+GGG - chr1_1:47372090-47372109 Msa0024680:CDS 45.0%
CATCAGTGAAGAACCAGCAT+TGG + chr1_1:47372499-47372518 None:intergenic 45.0%
!! CAATGCTGGTTCTTCACTGA+TGG - chr1_1:47372497-47372516 Msa0024680:intron 45.0%
!! ATGCTGGTTCTTCACTGATG+GGG - chr1_1:47372499-47372518 Msa0024680:intron 45.0%
ATTGGTATAGAGAGGGCTAC+TGG - chr1_1:47372792-47372811 Msa0024680:CDS 45.0%
TGGTACTATGGGAAGTTGCT+AGG - chr1_1:47372999-47373018 Msa0024680:intron 45.0%
GGTACTATGGGAAGTTGCTA+GGG - chr1_1:47373000-47373019 Msa0024680:intron 45.0%
GTACTATGGGAAGTTGCTAG+GGG - chr1_1:47373001-47373020 Msa0024680:intron 45.0%
! TTAAAATGGCCTGGTGGTGT+TGG - chr1_1:47373269-47373288 Msa0024680:intron 45.0%
CTAAACTAGCCCACCCAAAT+TGG + chr1_1:47373351-47373370 None:intergenic 45.0%
AGAAGTTATCTACGACCTCG+TGG - chr1_1:47373841-47373860 Msa0024680:intron 45.0%
GCCGATTATCTTCTTCTCCT+AGG + chr1_1:47374068-47374087 None:intergenic 45.0%
TCTTGTACTGTGAGCTTCTC+CGG - chr1_1:47374382-47374401 Msa0024680:CDS 45.0%
TTCCTCTTGACGCTTGAATC+CGG + chr1_1:47374728-47374747 None:intergenic 45.0%
ATGAATGGCATGGATGGAGA+GGG + chr1_1:47374797-47374816 None:intergenic 45.0%
TATGAATGGCATGGATGGAG+AGG + chr1_1:47374798-47374817 None:intergenic 45.0%
ACTACCATCATCAGAGAACG+AGG + chr1_1:47374904-47374923 None:intergenic 45.0%
!!! ATTAACATATATTTTAAAAA+AGG + chr1_1:47371572-47371591 None:intergenic 5.0%
!!! TAATTTAAAAATCATATTTT+TGG + chr1_1:47373451-47373470 None:intergenic 5.0%
!! CCTCTAAGCATCGAAACCTC+AGG + chr1_1:47370263-47370282 None:intergenic 50.0%
CCTGAGGTTTCGATGCTTAG+AGG - chr1_1:47370260-47370279 Msa0024680:intron 50.0%
GGTTTCGATGCTTAGAGGTG+AGG - chr1_1:47370265-47370284 Msa0024680:intron 50.0%
CACGGTGAATGTTCCGAGAA+AGG - chr1_1:47370295-47370314 Msa0024680:intron 50.0%
!! GGGTAGTTCTAGTTTGGGTG+AGG - chr1_1:47370316-47370335 Msa0024680:intron 50.0%
GAGGATTTGTCCGAGAGCTT+AGG - chr1_1:47370335-47370354 Msa0024680:intron 50.0%
GGATTTGTCCGAGAGCTTAG+GGG - chr1_1:47370337-47370356 Msa0024680:intron 50.0%
GTTATTGGTGTAGGAGGTGG+TGG - chr1_1:47370401-47370420 Msa0024680:intron 50.0%
AGACGGTTCTCAGGAAACAC+AGG + chr1_1:47370518-47370537 None:intergenic 50.0%
! GAACCGTCTGCAGATTGGTT+TGG - chr1_1:47370529-47370548 Msa0024680:intron 50.0%
TTGGAACTTACGCGAGGTCT+TGG - chr1_1:47370548-47370567 Msa0024680:intron 50.0%
GCAGCATTCATTCCCATCTC+AGG + chr1_1:47370587-47370606 None:intergenic 50.0%
CAGAGAGTCGATTGAAGAGG+CGG - chr1_1:47370616-47370635 Msa0024680:intron 50.0%
GGCGGTTTATGGAGCTGATA+TGG - chr1_1:47370634-47370653 Msa0024680:intron 50.0%
AGCTCTTTGAGCTAGAAGCG+CGG - chr1_1:47370860-47370879 Msa0024680:intron 50.0%
AAGGCTGTCAGTGTTGTCGA+CGG + chr1_1:47371012-47371031 None:intergenic 50.0%
AGAACGTTAACCAGTGCCCT+CGG + chr1_1:47371549-47371568 None:intergenic 50.0%
TGAGCTTAGCTCAGTCGGTA+GGG - chr1_1:47371808-47371827 Msa0024680:intron 50.0%
ACTTACTGAGTGCAGATCCC+TGG - chr1_1:47372432-47372451 Msa0024680:CDS 50.0%
CTTACTGAGTGCAGATCCCT+GGG - chr1_1:47372433-47372452 Msa0024680:CDS 50.0%
CGAGCTATAATGGCCAATGC+TGG - chr1_1:47372483-47372502 Msa0024680:intron 50.0%
GGTTCTTCACTGATGGGGAT+AGG - chr1_1:47372504-47372523 Msa0024680:intron 50.0%
ATGGGGATAGGAACTGCAAC+TGG - chr1_1:47372516-47372535 Msa0024680:intron 50.0%
AGAGGGCTACTGGAATTGTG+TGG - chr1_1:47372802-47372821 Msa0024680:CDS 50.0%
AATTAGCACTAGGGTCCACG+AGG + chr1_1:47373859-47373878 None:intergenic 50.0%
CTTCTTCTCCTAGGGATACC+CGG + chr1_1:47374059-47374078 None:intergenic 50.0%
AACCGGATTCAAGCGTCAAG+AGG - chr1_1:47374723-47374742 Msa0024680:CDS 50.0%
ACATGAAGAGAAGCCGCTAC+AGG - chr1_1:47374747-47374766 Msa0024680:CDS 50.0%
TGGATGGAGAGGGAATGAGA+GGG + chr1_1:47374787-47374806 None:intergenic 50.0%
ATGGATGGAGAGGGAATGAG+AGG + chr1_1:47374788-47374807 None:intergenic 50.0%
! ACAGACTAGTCAGCTCACTC+AGG - chr1_1:47374845-47374864 Msa0024680:CDS 50.0%
! CAGACTAGTCAGCTCACTCA+GGG - chr1_1:47374846-47374865 Msa0024680:CDS 50.0%
CCATCATCAGAGAACGAGGA+AGG + chr1_1:47374900-47374919 None:intergenic 50.0%
CCTTCCTCGTTCTCTGATGA+TGG - chr1_1:47374897-47374916 Msa0024680:intron 50.0%
TAGAGGTGAGGCGAGTAGCA+CGG - chr1_1:47370277-47370296 Msa0024680:intron 55.0%
!! AGGAGGTGGTGGATCTAACG+CGG - chr1_1:47370412-47370431 Msa0024680:intron 55.0%
CCAATCTGCAGACGGTTCTC+AGG + chr1_1:47370527-47370546 None:intergenic 55.0%
CCTGAGAACCGTCTGCAGAT+TGG - chr1_1:47370524-47370543 Msa0024680:intron 55.0%
AGCTGGTGGTAACCCTGAGA+TGG - chr1_1:47370571-47370590 Msa0024680:intron 55.0%
GCTGGTGGTAACCCTGAGAT+GGG - chr1_1:47370572-47370591 Msa0024680:intron 55.0%
!! GGTCTTGTTAACCAGTGCCC+CGG - chr1_1:47371396-47371415 Msa0024680:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+GGG - chr1_1:47371397-47371416 Msa0024680:intron 55.0%
TCTTGTTAACCAGTGCCCCG+GGG - chr1_1:47371398-47371417 Msa0024680:intron 55.0%
ATTCCTTAACCAGTGCCCCC+GGG + chr1_1:47371417-47371436 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+CGG + chr1_1:47371418-47371437 None:intergenic 55.0%
ACTGCTTAACCAATGCCCCG+AGG - chr1_1:47371529-47371548 Msa0024680:intron 55.0%
CTGCTTAACCAATGCCCCGA+GGG - chr1_1:47371530-47371549 Msa0024680:intron 55.0%
AACGTTAACCAGTGCCCTCG+GGG + chr1_1:47371547-47371566 None:intergenic 55.0%
GAACGTTAACCAGTGCCCTC+GGG + chr1_1:47371548-47371567 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+CGG - chr1_1:47371803-47371822 Msa0024680:intron 55.0%
GTGAGCTTAGCTCAGTCGGT+AGG - chr1_1:47371807-47371826 Msa0024680:intron 55.0%
! CTTTTGCAGGCTGGAATGGG+TGG - chr1_1:47372036-47372055 Msa0024680:intron 55.0%
GGTGGTGCTCCGATTATTGC+TGG - chr1_1:47372072-47372091 Msa0024680:CDS 55.0%
! ATTCTTCGACAGGGCGTTCG+TGG - chr1_1:47372303-47372322 Msa0024680:intron 55.0%
!! GTGGTGTTGGCTTGAGACCT+TGG - chr1_1:47373282-47373301 Msa0024680:intron 55.0%
! TTGGGGAGGAGCATACTCCA+AGG + chr1_1:47373302-47373321 None:intergenic 55.0%
TTGGAGTATGCTCCTCCCCA+AGG - chr1_1:47373301-47373320 Msa0024680:intron 55.0%
AGGCTCGAACCAGAGACCTT+GGG + chr1_1:47373320-47373339 None:intergenic 55.0%
!! AGCCTCCTCGGTGCCAATTT+GGG - chr1_1:47373335-47373354 Msa0024680:intron 55.0%
!! TCCTCGGTGCCAATTTGGGT+GGG - chr1_1:47373339-47373358 Msa0024680:intron 55.0%
CAGCATTTCCGGGTATCCCT+AGG - chr1_1:47374048-47374067 Msa0024680:intron 55.0%
AAGGACGCTCACGCTATCCT+AGG - chr1_1:47374955-47374974 Msa0024680:CDS 55.0%
AGGACGCTCACGCTATCCTA+GGG - chr1_1:47374956-47374975 Msa0024680:CDS 55.0%
CTTACGCGAGGTCTTGGAGC+TGG - chr1_1:47370554-47370573 Msa0024680:intron 60.0%
CTTGTTAACCAGTGCCCCGG+GGG - chr1_1:47371399-47371418 Msa0024680:intron 60.0%
TTCCTTAACCAGTGCCCCCG+GGG + chr1_1:47371416-47371435 None:intergenic 60.0%
CCGACTGAGCTAAGCTCACG+AGG + chr1_1:47371806-47371825 None:intergenic 60.0%
TTGCAGGCTGGAATGGGTGG+TGG - chr1_1:47372039-47372058 Msa0024680:intron 60.0%
!! GCTGGAATGGGTGGTGGAAC+CGG - chr1_1:47372045-47372064 Msa0024680:CDS 60.0%
! AATCGGAGCACCACCTGTGC+CGG + chr1_1:47372067-47372086 None:intergenic 60.0%
CTGAGTGCAGATCCCTGGGA+TGG - chr1_1:47372437-47372456 Msa0024680:intron 60.0%
GGTCTCAAGCCAACACCACC+AGG + chr1_1:47373281-47373300 None:intergenic 60.0%
ATGCTCCTCCCCAAGGTCTC+TGG - chr1_1:47373308-47373327 Msa0024680:intron 60.0%
TCGAACCAGAGACCTTGGGG+AGG + chr1_1:47373316-47373335 None:intergenic 60.0%
GGCTCGAACCAGAGACCTTG+GGG + chr1_1:47373319-47373338 None:intergenic 60.0%
GAGGCTCGAACCAGAGACCT+TGG + chr1_1:47373321-47373340 None:intergenic 60.0%
! GTCTCTGGTTCGAGCCTCCT+CGG - chr1_1:47373323-47373342 Msa0024680:intron 60.0%
!! GAGCCTCCTCGGTGCCAATT+TGG - chr1_1:47373334-47373353 Msa0024680:intron 60.0%
! CACCCAAATTGGCACCGAGG+AGG + chr1_1:47373340-47373359 None:intergenic 60.0%
!! CTCCTCGGTGCCAATTTGGG+TGG - chr1_1:47373338-47373357 Msa0024680:intron 60.0%
ACGCGAGGTCTTGGAGCTGG+TGG - chr1_1:47370557-47370576 Msa0024680:intron 65.0%
! AACCAATGCCCCGAGGGCAC+TGG - chr1_1:47371536-47371555 Msa0024680:intron 65.0%
AACCAGTGCCCTCGGGGCAT+TGG + chr1_1:47371541-47371560 None:intergenic 65.0%
!! ATGGGTGGTGGAACCGGCAC+AGG - chr1_1:47372051-47372070 Msa0024680:CDS 65.0%
GCCCACCCAAATTGGCACCG+AGG + chr1_1:47373343-47373362 None:intergenic 65.0%
!! TGCCCCGGGGGCACTGGTTA+AGG - chr1_1:47371411-47371430 Msa0024680:intron 70.0%
!! GGTGGTGGAACCGGCACAGG+TGG - chr1_1:47372054-47372073 Msa0024680:CDS 70.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr1_1:47371405-47371424 Msa0024680:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr1_1:47371410-47371429 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 47369592 47375308 47369592 ID=Msa0024680;Name=Msa0024680
chr1_1 mRNA 47369592 47375308 47369592 ID=Msa0024680-mRNA-1;Parent=Msa0024680;Name=Msa0024680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=24|1|1|1|0.75|0.66|9|325|536
chr1_1 exon 47369592 47370051 47369592 ID=Msa0024680-mRNA-1:exon:13479;Parent=Msa0024680-mRNA-1
chr1_1 exon 47370132 47370197 47370132 ID=Msa0024680-mRNA-1:exon:13478;Parent=Msa0024680-mRNA-1
chr1_1 exon 47370981 47371073 47370981 ID=Msa0024680-mRNA-1:exon:13477;Parent=Msa0024680-mRNA-1
chr1_1 exon 47372040 47372164 47372040 ID=Msa0024680-mRNA-1:exon:13476;Parent=Msa0024680-mRNA-1
chr1_1 exon 47372363 47372453 47372363 ID=Msa0024680-mRNA-1:exon:13475;Parent=Msa0024680-mRNA-1
chr1_1 exon 47372556 47372855 47372556 ID=Msa0024680-mRNA-1:exon:13474;Parent=Msa0024680-mRNA-1
chr1_1 exon 47374233 47374898 47374233 ID=Msa0024680-mRNA-1:exon:13473;Parent=Msa0024680-mRNA-1
chr1_1 exon 47374919 47374979 47374919 ID=Msa0024680-mRNA-1:exon:13472;Parent=Msa0024680-mRNA-1
chr1_1 exon 47375211 47375308 47375211 ID=Msa0024680-mRNA-1:exon:13471;Parent=Msa0024680-mRNA-1
chr1_1 five_prime_UTR 47375285 47375308 47375285 ID=Msa0024680-mRNA-1:five_prime_utr;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47375211 47375284 47375211 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47374919 47374979 47374919 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47374233 47374898 47374233 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47372556 47372855 47372556 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47372363 47372453 47372363 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47372040 47372164 47372040 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47370981 47371073 47370981 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47370132 47370197 47370132 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 CDS 47369917 47370051 47369917 ID=Msa0024680-mRNA-1:cds;Parent=Msa0024680-mRNA-1
chr1_1 three_prime_UTR 47369592 47369916 47369592 ID=Msa0024680-mRNA-1:three_prime_utr;Parent=Msa0024680-mRNA-1
Gene Sequence

>Msa0024680

ATGAGCAAAGGTGGTCGTGCTAACCGTAAAACCTTTTGCAGTTTTCCAATCAAATGCTTCCCACAACTTCTCAGGTTTTGGAAGAAAATTTTCTGGGTAAATGGAAAGTTTGAATCTTTTGGGTCCCTAAGTTTTATCCCAATTTTGAAGTTCAAAATGGTGACTTGTGCGTCAACAAATTTTGCACATTCCAATGCTATAAATTCAGCAGGGGTGTTTAATGTTATTAGAGGAAGAAAATTTTCTATGAGAGTTAATTTCATGAAAAATTTTGATAGCAAAATTGGATTTTTAGGTAGTGAGAGAAAGTTAGGTTTAGTTCAAGTTAAGTGTTCAATTAATTCCAATAATGGTAGTTCATATCATAACCAAGACCCTTTTCTACATCTGCATCCTGAGGTTTCGATGCTTAGAGGTGAGGCGAGTAGCACGGTGAATGTTCCGAGAAAGGGTAGTTCTAGTTTGGGTGAGGATTTGTCCGAGAGCTTAGGGGATATATCTAGTGAGAGTAATTACAATCAGGCGAAGATTAAAGTTATTGGTGTAGGAGGTGGTGGATCTAACGCGGTGAATCGTATGATAGAGAGTTCGATGCATGGAGTTGAGTTTTGGATTGTTAATACTGATGTACAAGCTATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTCTGCAGATTGGTTTGGAACTTACGCGAGGTCTTGGAGCTGGTGGTAACCCTGAGATGGGAATGAATGCTGCGAAAGAAAGCAGAGAGTCGATTGAAGAGGCGGTTTATGGAGCTGATATGGTCTTTGTTACAGCTGGAATGGGTGGTGGAACCGGCACAGGTGGTGCTCCGATTATTGCTGGTGTTGCAAAGTCAATGGGTATACTGACTGTTGGGATTGTCACGACCCCTTTTTCATTTGAAGGACGAAAGAGATCCATTCAAGCACAAGAAGGAATTACAGCTTTAAGAGATAATGTCGATACTCTAATAGTTATTCCAAATGACAAGCTATTAACTGCAGTTTCTCAATCTACCCCTGTAACGGAAGCATTCAATCTTGCTGATGATATTCTTCGACAGGGCGTTCGTGGCATATCTGATATTATTACAATCCCTGGGATGGTAAATGTTGATTTTGCTGATATTCGAGCTATAATGGCCAATGCTGGTTCTTCACTGATGGGGATAGGAACTGCAACTGGGAAAACAAGGGCAAGAGATGCTGCGTTAAATGCTATTCAGTCTCCTTTACTGGATATTGGTATAGAGAGGGCTACTGGAATTGTGTGGAACATAACTGGTGGGAGTGATCTGACTTTGTTTGAGGTAAATGCTGCTGCAGAAGTTATCTACGACCTCGTGGACCCTAGTGCTAATTTAATTTTTGGAGCAGTAATAGATCCTTCACTTACTGGTCAAGTAAGCATAACATTAATTGCAACCGGATTCAAGCGTCAAGAGGAACATGAAGAGAAGCCGCTACAGACTAGTCAGCTCACTCAGGGAGATACAACTGTCAATTTCAATCAGCGACCTTCCTCGTTCTCTGATGATGGTAGTTTGTTTGAGATACCTGATTTCTTAAAGAAGAAAGGACGCTCACGCTATCCTAGGGTTTAA

Protein sequence

>Msa0024680

MSKGGRANRKTFCSFPIKCFPQLLRFWKKIFWVNGKFESFGSLSFIPILKFKMVTCASTNFAHSNAINSAGVFNVIRGRKFSMRVNFMKNFDSKIGFLGSERKLGLVQVKCSINSNNGSSYHNQDPFLHLHPEVSMLRGEASSTVNVPRKGSSSLGEDLSESLGDISSESNYNQAKIKVIGVGGGGSNAVNRMIESSMHGVEFWIVNTDVQAMRMSPVFPENRLQIGLELTRGLGAGGNPEMGMNAAKESRESIEEAVYGADMVFVTAGMGGGTGTGGAPIIAGVAKSMGILTVGIVTTPFSFEGRKRSIQAQEGITALRDNVDTLIVIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGMVNVDFADIRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSLTGQVSITLIATGFKRQEEHEEKPLQTSQLTQGDTTVNFNQRPSSFSDDGSLFEIPDFLKKKGRSRYPRV*