Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472380 | XP_003602403.1 | 95.413 | 218 | 2 | 1 | 1 | 210 | 1 | 218 | 5.00e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472380 | sp|Q94JX9|NACA2_ARATH | 60.909 | 220 | 73 | 4 | 1 | 210 | 1 | 217 | 1.29e-66 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472380 | G7J922 | 95.413 | 218 | 2 | 1 | 1 | 210 | 1 | 218 | 2.39e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0472380 | 0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0003470 | Msa0472380 | 0.821801 | 3.328837e-53 | -8.615850e-47 |
| Msa0008830 | Msa0472380 | 0.817760 | 2.789484e-52 | -8.615850e-47 |
| Msa0024680 | Msa0472380 | 0.820137 | 8.041161e-53 | -8.615850e-47 |
| Msa0027540 | Msa0472380 | 0.828631 | 8.076310e-55 | -8.615850e-47 |
| Msa0028060 | Msa0472380 | 0.820138 | 8.034863e-53 | -8.615850e-47 |
| Msa0029710 | Msa0472380 | 0.807724 | 4.395680e-50 | -8.615850e-47 |
| Msa0030310 | Msa0472380 | 0.833477 | 5.214170e-56 | -8.615850e-47 |
| Msa0032120 | Msa0472380 | 0.811822 | 5.776366e-51 | -8.615850e-47 |
| Msa0032840 | Msa0472380 | -0.812241 | 4.679960e-51 | -8.615850e-47 |
| Msa0041540 | Msa0472380 | 0.837505 | 4.995018e-57 | -8.615850e-47 |
| Msa0041620 | Msa0472380 | 0.807229 | 5.596104e-50 | -8.615850e-47 |
| Msa0044020 | Msa0472380 | 0.802666 | 5.034951e-49 | -8.615850e-47 |
| Msa0072810 | Msa0472380 | 0.804213 | 2.405975e-49 | -8.615850e-47 |
| Msa0075310 | Msa0472380 | 0.822247 | 2.624099e-53 | -8.615850e-47 |
| Msa0095380 | Msa0472380 | 0.820902 | 5.367001e-53 | -8.615850e-47 |
| Msa0096670 | Msa0472380 | 0.800334 | 1.512996e-48 | -8.615850e-47 |
| Msa0124990 | Msa0472380 | 0.805099 | 1.571941e-49 | -8.615850e-47 |
| Msa0125580 | Msa0472380 | 0.820039 | 8.466486e-53 | -8.615850e-47 |
| Msa0135980 | Msa0472380 | 0.827321 | 1.668667e-54 | -8.615850e-47 |
| Msa0139900 | Msa0472380 | 0.818006 | 2.455501e-52 | -8.615850e-47 |
| Msa0140220 | Msa0472380 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0146470 | Msa0472380 | 0.811235 | 7.748913e-51 | -8.615850e-47 |
| Msa0168100 | Msa0472380 | 0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0168250 | Msa0472380 | 0.800040 | 1.736812e-48 | -8.615850e-47 |
| Msa0169570 | Msa0472380 | 0.807689 | 4.471928e-50 | -8.615850e-47 |
| Msa0172350 | Msa0472380 | 0.806156 | 9.433141e-50 | -8.615850e-47 |
| Msa0183620 | Msa0472380 | 0.814744 | 1.318176e-51 | -8.615850e-47 |
| Msa0185700 | Msa0472380 | 0.802279 | 6.049144e-49 | -8.615850e-47 |
| Msa0203160 | Msa0472380 | 0.803385 | 3.575614e-49 | -8.615850e-47 |
| Msa0207000 | Msa0472380 | 0.827822 | 1.265074e-54 | -8.615850e-47 |
| Msa0222920 | Msa0472380 | 0.804429 | 2.169507e-49 | -8.615850e-47 |
| Msa0230550 | Msa0472380 | -0.818241 | 2.171672e-52 | -8.615850e-47 |
| Msa0368660 | Msa0472380 | 0.808996 | 2.353589e-50 | -8.615850e-47 |
| Msa0373490 | Msa0472380 | 0.812642 | 3.825892e-51 | -8.615850e-47 |
| Msa0380310 | Msa0472380 | 0.811196 | 7.900633e-51 | -8.615850e-47 |
| Msa0386270 | Msa0472380 | 0.801421 | 9.074634e-49 | -8.615850e-47 |
| Msa0423360 | Msa0472380 | -0.808263 | 3.375314e-50 | -8.615850e-47 |
| Msa0436460 | Msa0472380 | 0.833489 | 5.177880e-56 | -8.615850e-47 |
| Msa0469910 | Msa0472380 | -0.827783 | 1.292711e-54 | -8.615850e-47 |
| Msa0472380 | Msa0484690 | 0.813829 | 2.099796e-51 | -8.615850e-47 |
| Msa0472380 | Msa0524120 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
| Msa0472380 | Msa0525340 | 0.801561 | 8.495300e-49 | -8.615850e-47 |
| Msa0472380 | Msa0526710 | 0.807318 | 5.359065e-50 | -8.615850e-47 |
| Msa0472380 | Msa0527590 | 0.841033 | 6.070740e-58 | -8.615850e-47 |
| Msa0472380 | Msa0527600 | 0.804308 | 2.299043e-49 | -8.615850e-47 |
| Msa0472380 | Msa0532770 | 0.811230 | 7.767589e-51 | -8.615850e-47 |
| Msa0472380 | Msa0546380 | 0.804868 | 1.757071e-49 | -8.615850e-47 |
| Msa0472380 | Msa0546840 | 0.838373 | 2.989523e-57 | -8.615850e-47 |
| Msa0472380 | Msa0591060 | 0.812096 | 5.035294e-51 | -8.615850e-47 |
| Msa0472380 | Msa0619980 | 0.811824 | 5.772017e-51 | -8.615850e-47 |
| Msa0472380 | Msa0633750 | 0.809599 | 1.747709e-50 | -8.615850e-47 |
| Msa0472380 | Msa0638690 | 0.817262 | 3.613265e-52 | -8.615850e-47 |
| Msa0472380 | Msa0642650 | 0.839765 | 1.302759e-57 | -8.615850e-47 |
| Msa0472380 | Msa0670980 | 0.818571 | 1.828243e-52 | -8.615850e-47 |
| Msa0472380 | Msa0678860 | 0.827528 | 1.488368e-54 | -8.615850e-47 |
| Msa0472380 | Msa0681890 | 0.827143 | 1.840444e-54 | -8.615850e-47 |
| Msa0472380 | Msa0692080 | 0.801597 | 8.351603e-49 | -8.615850e-47 |
| Msa0472380 | Msa0706370 | 0.809552 | 1.788268e-50 | -8.615850e-47 |
| Msa0472380 | Msa0725920 | 0.807590 | 4.692237e-50 | -8.615850e-47 |
| Msa0472380 | Msa0730180 | 0.817558 | 3.099220e-52 | -8.615850e-47 |
| Msa0472380 | Msa0755340 | 0.820599 | 6.300087e-53 | -8.615850e-47 |
| Msa0472380 | Msa0756690 | 0.804602 | 1.996498e-49 | -8.615850e-47 |
| Msa0472380 | Msa0810020 | 0.808776 | 2.622793e-50 | -8.615850e-47 |
| Msa0472380 | Msa0836130 | 0.815922 | 7.211972e-52 | -8.615850e-47 |
| Msa0472380 | Msa0845750 | 0.801677 | 8.044532e-49 | -8.615850e-47 |
| Msa0472380 | Msa0854570 | 0.817976 | 2.493511e-52 | -8.615850e-47 |
| Msa0472380 | Msa0862100 | 0.807209 | 5.653365e-50 | -8.615850e-47 |
| Msa0472380 | Msa0872310 | 0.814995 | 1.159341e-51 | -8.615850e-47 |
| Msa0472380 | Msa0883030 | 0.826887 | 2.119560e-54 | -8.615850e-47 |
| Msa0472380 | Msa0889740 | 0.801881 | 7.305398e-49 | -8.615850e-47 |
| Msa0472380 | Msa0890250 | 0.815928 | 7.190550e-52 | -8.615850e-47 |
| Msa0472380 | Msa0905550 | 0.823787 | 1.147530e-53 | -8.615850e-47 |
| Msa0472380 | Msa0907700 | 0.808022 | 3.797797e-50 | -8.615850e-47 |
| Msa0472380 | Msa0922770 | 0.829677 | 4.503463e-55 | -8.615850e-47 |
| Msa0472380 | Msa0925160 | 0.825132 | 5.537358e-54 | -8.615850e-47 |
| Msa0472380 | Msa0930330 | 0.808841 | 2.539924e-50 | -8.615850e-47 |
| Msa0472380 | Msa0937550 | 0.820801 | 5.660996e-53 | -8.615850e-47 |
| Msa0472380 | Msa0937670 | 0.803186 | 3.931535e-49 | -8.615850e-47 |
| Msa0472380 | Msa0955260 | 0.811927 | 5.479125e-51 | -8.615850e-47 |
| Msa0472380 | Msa0955300 | 0.814496 | 1.495895e-51 | -8.615850e-47 |
| Msa0472380 | Msa0974750 | 0.803502 | 3.381148e-49 | -8.615850e-47 |
| Msa0472380 | Msa0990520 | 0.812450 | 4.214806e-51 | -8.615850e-47 |
| Msa0472380 | Msa1004500 | 0.802573 | 5.262614e-49 | -8.615850e-47 |
| Msa0472380 | Msa1018790 | 0.852422 | 4.664028e-61 | -8.615850e-47 |
| Msa0472380 | Msa1044340 | 0.842534 | 2.438357e-58 | -8.615850e-47 |
| Msa0472380 | Msa1107440 | 0.809860 | 1.535964e-50 | -8.615850e-47 |
| Msa0472380 | Msa1129560 | 0.809106 | 2.228897e-50 | -8.615850e-47 |
| Msa0472380 | Msa1129720 | 0.810088 | 1.371464e-50 | -8.615850e-47 |
| Msa0472380 | Msa1150970 | 0.816451 | 5.493290e-52 | -8.615850e-47 |
| Msa0472380 | Msa1159100 | 0.805956 | 1.038975e-49 | -8.615850e-47 |
| Msa0472380 | Msa1159990 | 0.803962 | 2.713149e-49 | -8.615850e-47 |
| Msa0472380 | Msa1171340 | 0.802767 | 4.799690e-49 | -8.615850e-47 |
| Msa0472380 | Msa1188940 | 0.807801 | 4.232969e-50 | -8.615850e-47 |
| Msa0472380 | Msa1200920 | 0.810719 | 1.002405e-50 | -8.615850e-47 |
| Msa0472380 | Msa1210770 | 0.800668 | 1.293562e-48 | -8.615850e-47 |
| Msa0472380 | Msa1226620 | 0.818153 | 2.274190e-52 | -8.615850e-47 |
| Msa0472380 | Msa1237030 | 0.846334 | 2.318623e-59 | -8.615850e-47 |
| Msa0472380 | Msa1249870 | 0.806111 | 9.638817e-50 | -8.615850e-47 |
| Msa0472380 | Msa1271600 | 0.806486 | 8.037476e-50 | -8.615850e-47 |
| Msa0472380 | Msa1281190 | 0.803220 | 3.868030e-49 | -8.615850e-47 |
| Msa0472380 | Msa1284520 | 0.823887 | 1.087559e-53 | -8.615850e-47 |
| Msa0472380 | Msa1323060 | 0.800580 | 1.348081e-48 | -8.615850e-47 |
| Msa0472380 | Msa1365200 | 0.805778 | 1.132429e-49 | -8.615850e-47 |
| Msa0472380 | Msa1365870 | 0.816758 | 4.688810e-52 | -8.615850e-47 |
| Msa0472380 | Msa1367940 | 0.800733 | 1.254890e-48 | -8.615850e-47 |
| Msa0472380 | Msa1374440 | 0.811986 | 5.320795e-51 | -8.615850e-47 |
| Msa0472380 | Msa1376640 | 0.803785 | 2.952928e-49 | -8.615850e-47 |
| Msa0472380 | Msa1379570 | 0.836403 | 9.552405e-57 | -8.615850e-47 |
| Msa0472380 | Msa1379990 | 0.831754 | 1.395660e-55 | -8.615850e-47 |
| Msa0472380 | Msa1382310 | 0.814360 | 1.603167e-51 | -8.615850e-47 |
| Msa0472380 | Msa1390310 | 0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0472380 | Msa1398480 | 0.835932 | 1.258241e-56 | -8.615850e-47 |
| Msa0472380 | Msa1422270 | 0.814239 | 1.704697e-51 | -8.615850e-47 |
| Msa0472380 | Msa1449880 | 0.809321 | 2.004987e-50 | -8.615850e-47 |
| Msa0472380 | Msa1456650 | 0.805701 | 1.175573e-49 | -8.615850e-47 |
| Msa0472380 | Msa1464730 | 0.800839 | 1.194024e-48 | -8.615850e-47 |
| Msa0246690 | Msa0472380 | 0.859643 | 3.589847e-63 | -8.615850e-47 |
| Msa0257310 | Msa0472380 | 0.809398 | 1.929524e-50 | -8.615850e-47 |
| Msa0260280 | Msa0472380 | 0.801136 | 1.038363e-48 | -8.615850e-47 |
| Msa0264350 | Msa0472380 | 0.806898 | 6.578752e-50 | -8.615850e-47 |
| Msa0267760 | Msa0472380 | 0.810707 | 1.008065e-50 | -8.615850e-47 |
| Msa0301180 | Msa0472380 | 0.804474 | 2.123001e-49 | -8.615850e-47 |
| Msa0302450 | Msa0472380 | 0.805159 | 1.526808e-49 | -8.615850e-47 |
| Msa0304260 | Msa0472380 | 0.806146 | 9.479327e-50 | -8.615850e-47 |
| Msa0304300 | Msa0472380 | 0.814321 | 1.635339e-51 | -8.615850e-47 |
| Msa0319200 | Msa0472380 | 0.828622 | 8.115271e-55 | -8.615850e-47 |
| Msa0342200 | Msa0472380 | 0.809833 | 1.556006e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472380 | MtrunA17_Chr3g0128051 | 95.413 | 218 | 2 | 1 | 1 | 210 | 1 | 218 | 4.60e-147 | 407 |
| Msa0472380 | MtrunA17_Chr3g0128041 | 74.561 | 228 | 39 | 5 | 1 | 210 | 1 | 227 | 3.25e-99 | 287 |
| Msa0472380 | MtrunA17_Chr7g0255421 | 66.000 | 150 | 38 | 3 | 69 | 210 | 59 | 203 | 8.28e-60 | 186 |
| Msa0472380 | MtrunA17_Chr3g0128591 | 62.121 | 132 | 32 | 3 | 83 | 210 | 382 | 499 | 7.63e-39 | 139 |
| Msa0472380 | MtrunA17_Chr3g0128571 | 92.857 | 42 | 3 | 0 | 168 | 209 | 21 | 62 | 5.13e-20 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472380 | AT3G49470.1 | 60.909 | 220 | 73 | 4 | 1 | 210 | 1 | 217 | 1.31e-67 | 207 |
| Msa0472380 | AT3G49470.2 | 67.045 | 176 | 48 | 3 | 36 | 201 | 33 | 208 | 3.36e-62 | 193 |
| Msa0472380 | AT4G10480.1 | 68.590 | 156 | 40 | 2 | 64 | 210 | 57 | 212 | 3.90e-61 | 190 |
| Msa0472380 | AT4G10480.2 | 69.281 | 153 | 38 | 2 | 67 | 210 | 59 | 211 | 8.84e-61 | 189 |
| Msa0472380 | AT1G33040.1 | 65.359 | 153 | 44 | 2 | 67 | 210 | 57 | 209 | 1.09e-58 | 184 |
| Msa0472380 | AT3G12390.1 | 64.000 | 150 | 43 | 2 | 69 | 210 | 57 | 203 | 1.06e-54 | 173 |
| Msa0472380 | AT5G13850.1 | 67.763 | 152 | 39 | 2 | 69 | 210 | 53 | 204 | 5.03e-54 | 172 |
Find 76 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAGACCTACGTTATATT+TGG | 0.142242 | 3_3:+74803460 | Msa0472380:CDS |
| ATAACGTAGGTCTCTGAATT+TGG | 0.208217 | 3_3:-74803454 | None:intergenic |
| CAGAGACCTACGTTATATTT+GGG | 0.269261 | 3_3:+74803461 | Msa0472380:CDS |
| TCAACCTCCTCTTCCTCTTC+AGG | 0.290554 | 3_3:-74803607 | None:intergenic |
| GCCATTATAGATCCCATATC+TGG | 0.303001 | 3_3:-74803547 | None:intergenic |
| GAGTGGGCTTAAAGATGTTT+TGG | 0.342159 | 3_3:+74801628 | None:intergenic |
| CACAAGCTGCTCAACAGTTC+AGG | 0.364720 | 3_3:+74803521 | Msa0472380:CDS |
| ACAGTTCAGGATGCCAGATA+TGG | 0.369124 | 3_3:+74803534 | Msa0472380:CDS |
| ATCAAATGGTTCATATTGCT+TGG | 0.378224 | 3_3:-74801652 | None:intergenic |
| AACCCATTGATGGCGTTACT+AGG | 0.383821 | 3_3:+74803088 | Msa0472380:CDS |
| GCCAGATATGGGATCTATAA+TGG | 0.384072 | 3_3:+74803546 | Msa0472380:CDS |
| ACCACTCTCTTCTCATCAAA+TGG | 0.399569 | 3_3:-74801666 | None:intergenic |
| TTTGGACTCTTGAAGACATC+AGG | 0.416876 | 3_3:-74803436 | None:intergenic |
| GAGAGAAACAAAGATTAGAT+AGG | 0.417687 | 3_3:-74801764 | None:intergenic |
| TCGTTATCATCCTCGACAAT+AGG | 0.425509 | 3_3:-74802022 | None:intergenic |
| AGGCTCTCAAAACTCACAAT+GGG | 0.426765 | 3_3:+74803704 | Msa0472380:CDS |
| TACCCTAGTAACGCCATCAA+TGG | 0.427187 | 3_3:-74803091 | None:intergenic |
| TGTTTCTCTCTATCTCTCTC+CGG | 0.430388 | 3_3:+74801777 | Msa0472380:five_prime_UTR |
| TTTGAGAGCCTTGACAGCCT+TGG | 0.440959 | 3_3:-74803692 | None:intergenic |
| GAAGAGGAGGTTGATGAAAC+TGG | 0.453955 | 3_3:+74803616 | Msa0472380:CDS |
| CGTCGACGGAGGGAAGTTGT+TGG | 0.458861 | 3_3:-74801875 | None:intergenic |
| TCGAAAAGCAATGTTGAAGC+TGG | 0.458999 | 3_3:+74803059 | Msa0472380:CDS |
| TTGTTGGTCGGTGGCTTCGT+CGG | 0.466936 | 3_3:-74801859 | None:intergenic |
| TCAAATGGTTCATATTGCTT+GGG | 0.469933 | 3_3:-74801651 | None:intergenic |
| CTTGAGCGTTGTTTCGTCGA+CGG | 0.472022 | 3_3:-74801889 | None:intergenic |
| GAGCTGGTAATGACACAAGC+TGG | 0.474762 | 3_3:+74803658 | Msa0472380:CDS |
| GTCGGCGGCAGCGTCAATGA+TGG | 0.479255 | 3_3:-74801841 | None:intergenic |
| CAAGAACAAACCACTTCCTC+AGG | 0.481007 | 3_3:+74801908 | Msa0472380:CDS |
| GTTTCTCTCTATCTCTCTCC+GGG | 0.489809 | 3_3:+74801778 | Msa0472380:five_prime_UTR |
| ACTCACAATGGGGACATTGT+TGG | 0.489937 | 3_3:+74803715 | Msa0472380:CDS |
| ACCCTAGTAACGCCATCAAT+GGG | 0.495464 | 3_3:-74803090 | None:intergenic |
| GTGTCTGCAACTGAGAGCTC+AGG | 0.502334 | 3_3:-74803501 | None:intergenic |
| ACCCATTGATGGCGTTACTA+GGG | 0.507698 | 3_3:+74803089 | Msa0472380:CDS |
| TTAATTAGTTAGTTCCATGA+TGG | 0.513698 | 3_3:-74803740 | None:intergenic |
| CAGTTCAGGATGCCAGATAT+GGG | 0.516112 | 3_3:+74803535 | Msa0472380:CDS |
| CTGGGACTAAAACCCATTGA+TGG | 0.518065 | 3_3:+74803078 | Msa0472380:CDS |
| AAATGGAAAACCTGAGGAAG+TGG | 0.520595 | 3_3:-74801918 | None:intergenic |
| AGCACAGCCTGAAGAGGAAG+AGG | 0.523112 | 3_3:+74803600 | Msa0472380:CDS |
| TCGGCGGCAGCGTCAATGAT+GGG | 0.536510 | 3_3:-74801840 | None:intergenic |
| GTCAAAAGCCAAGGCTGTCA+AGG | 0.539706 | 3_3:+74803684 | Msa0472380:CDS |
| CGAAAAGCAATGTTGAAGCT+GGG | 0.542413 | 3_3:+74803060 | Msa0472380:CDS |
| CAACACTCAACACGTGCGAA+TGG | 0.546009 | 3_3:-74801719 | None:intergenic |
| TCATTACCAGCTCAATGTCG+TGG | 0.549319 | 3_3:-74803648 | None:intergenic |
| AAGGCTCTCAAAACTCACAA+TGG | 0.552612 | 3_3:+74803703 | Msa0472380:CDS |
| GGACATTGTTGGTGCCATCA+TGG | 0.557792 | 3_3:+74803726 | Msa0472380:CDS |
| GCAGCGTCAATGATGGGACC+TGG | 0.558575 | 3_3:-74801834 | None:intergenic |
| ATATCGTTAGCCATGTCTCC+AGG | 0.560621 | 3_3:+74801816 | Msa0472380:exon |
| GGAGGGAAGTTGTTGGTCGG+TGG | 0.561823 | 3_3:-74801868 | None:intergenic |
| GAACAAGGTGCTGCAGCTGA+TGG | 0.562947 | 3_3:+74803577 | Msa0472380:CDS |
| AGCGTTGTTTCGTCGACGGA+GGG | 0.566503 | 3_3:-74801885 | None:intergenic |
| AGCTGGTAATGACACAAGCT+GGG | 0.566806 | 3_3:+74803659 | Msa0472380:CDS |
| GAGCGTTGTTTCGTCGACGG+AGG | 0.566873 | 3_3:-74801886 | None:intergenic |
| GAGAAGAGAGTGGTGAATGA+AGG | 0.570400 | 3_3:+74801675 | Msa0472380:five_prime_UTR |
| AGCTGGGGTGTCAAAAGCCA+AGG | 0.583545 | 3_3:+74803675 | Msa0472380:CDS |
| GGAGGCCCACGACATTGAGC+TGG | 0.585026 | 3_3:+74803642 | Msa0472380:CDS |
| ACAGCCTGAAGAGGAAGAGG+AGG | 0.588386 | 3_3:+74803603 | Msa0472380:CDS |
| GACGGAGGGAAGTTGTTGGT+CGG | 0.592423 | 3_3:-74801871 | None:intergenic |
| TTGGTCGGTGGCTTCGTCGG+CGG | 0.592563 | 3_3:-74801856 | None:intergenic |
| CATTACCAGCTCAATGTCGT+GGG | 0.601311 | 3_3:-74803647 | None:intergenic |
| TGATGGAGCACAGCCTGAAG+AGG | 0.604282 | 3_3:+74803594 | Msa0472380:CDS |
| AATGATGGGACCTGGAGACA+TGG | 0.605793 | 3_3:-74801826 | None:intergenic |
| AGAGACCTACGTTATATTTG+GGG | 0.608062 | 3_3:+74803462 | Msa0472380:CDS |
| GACCTACGTTATATTTGGGG+AGG | 0.613942 | 3_3:+74803465 | Msa0472380:CDS |
| TATTGCACTCTACTTTCACC+CGG | 0.620609 | 3_3:-74801796 | None:intergenic |
| GGAGGTTGATGAAACTGGCG+TGG | 0.623179 | 3_3:+74803621 | Msa0472380:CDS |
| CGAGATGTAGGTGGTACTGA+AGG | 0.629687 | 3_3:+74803006 | Msa0472380:intron |
| TGACGACAAAGACGAATCTG+AGG | 0.650663 | 3_3:+74802045 | Msa0472380:CDS |
| AGATGATGCTCCTATTGTCG+AGG | 0.659014 | 3_3:+74802012 | Msa0472380:CDS |
| GGTTGATGAAACTGGCGTGG+AGG | 0.659813 | 3_3:+74803624 | Msa0472380:CDS |
| TGCCTCCCCAAATATAACGT+AGG | 0.662269 | 3_3:-74803467 | None:intergenic |
| GCGAATGGATGAAAGAAATG+AGG | 0.669534 | 3_3:-74801704 | None:intergenic |
| GAAGACGACGAATCTCCTCA+AGG | 0.677391 | 3_3:+74802073 | Msa0472380:CDS |
| GGCTCTCAAAACTCACAATG+GGG | 0.691219 | 3_3:+74803705 | Msa0472380:CDS |
| ATAATGGCAAAACAAGAACA+AGG | 0.704410 | 3_3:+74803562 | Msa0472380:CDS |
| ACCATTTGATGAGAAGAGAG+TGG | 0.731697 | 3_3:+74801665 | Msa0472380:five_prime_UTR |
| GCTGGTAATGACACAAGCTG+GGG | 0.796663 | 3_3:+74803660 | Msa0472380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAGAGAATAAATATA+TGG | - | chr3_3:74801955-74801974 | None:intergenic | 15.0% |
| !!! | CATATATTTATTCTCTATTT+TGG | + | chr3_3:74801953-74801972 | Msa0472380:intron | 15.0% |
| !! | TATTTATTAACATCGTTTAA+TGG | + | chr3_3:74802112-74802131 | Msa0472380:intron | 15.0% |
| !!! | TCATTTTCTCAAAAATTTAT+GGG | + | chr3_3:74802479-74802498 | Msa0472380:intron | 15.0% |
| !!! | TATTTTCTCAAATTATTGTT+GGG | - | chr3_3:74802624-74802643 | None:intergenic | 15.0% |
| !! | TTGAATCAAATTAAAAATGA+AGG | - | chr3_3:74802712-74802731 | None:intergenic | 15.0% |
| !!! | TATCTGTTGATTTATTTTTT+TGG | + | chr3_3:74802979-74802998 | Msa0472380:intron | 15.0% |
| !! | CAAAATAGAGAATAAATATA+TGG | - | chr3_3:74801955-74801974 | None:intergenic | 15.0% |
| !!! | CATATATTTATTCTCTATTT+TGG | + | chr3_3:74801953-74801972 | Msa0472380:intron | 15.0% |
| !! | TATTTATTAACATCGTTTAA+TGG | + | chr3_3:74802112-74802131 | Msa0472380:intron | 15.0% |
| !!! | TCATTTTCTCAAAAATTTAT+GGG | + | chr3_3:74802479-74802498 | Msa0472380:intron | 15.0% |
| !!! | TATTTTCTCAAATTATTGTT+GGG | - | chr3_3:74802624-74802643 | None:intergenic | 15.0% |
| !! | TTGAATCAAATTAAAAATGA+AGG | - | chr3_3:74802712-74802731 | None:intergenic | 15.0% |
| !!! | TATCTGTTGATTTATTTTTT+TGG | + | chr3_3:74802979-74802998 | Msa0472380:intron | 15.0% |
| !!! | GTCATTTTCTCAAAAATTTA+TGG | + | chr3_3:74802478-74802497 | Msa0472380:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATTGT+TGG | - | chr3_3:74802625-74802644 | None:intergenic | 20.0% |
| !! | ATTGAAGATACATAAGAAAA+AGG | - | chr3_3:74802925-74802944 | None:intergenic | 20.0% |
| !!! | GTCATTTTCTCAAAAATTTA+TGG | + | chr3_3:74802478-74802497 | Msa0472380:intron | 20.0% |
| !!! | CTATTTTCTCAAATTATTGT+TGG | - | chr3_3:74802625-74802644 | None:intergenic | 20.0% |
| !! | ATTGAAGATACATAAGAAAA+AGG | - | chr3_3:74802925-74802944 | None:intergenic | 20.0% |
| ! | AATAAATATATGGAATCCGA+TGG | - | chr3_3:74801945-74801964 | None:intergenic | 25.0% |
| !! | TACTATAAGATTTTACCTTG+AGG | - | chr3_3:74802091-74802110 | None:intergenic | 25.0% |
| ! | TAGGTTCTTGTAAGTAAAAT+CGG | + | chr3_3:74802230-74802249 | Msa0472380:intron | 25.0% |
| ! | AATTCTTGTATTCTTGTTCT+GGG | + | chr3_3:74802325-74802344 | Msa0472380:intron | 25.0% |
| ! | AACTATAATCTATGTTGCAT+AGG | - | chr3_3:74802364-74802383 | None:intergenic | 25.0% |
| ! | CTATTCTCACATCATTATAA+AGG | + | chr3_3:74802744-74802763 | Msa0472380:intron | 25.0% |
| ! | GAATTACTTTATACCTTGTT+AGG | + | chr3_3:74803393-74803412 | Msa0472380:intron | 25.0% |
| ! | ATGAAAAACATAACCTAACA+AGG | - | chr3_3:74803409-74803428 | None:intergenic | 25.0% |
| ! | TTAATTAGTTAGTTCCATGA+TGG | - | chr3_3:74803743-74803762 | None:intergenic | 25.0% |
| ! | AATAAATATATGGAATCCGA+TGG | - | chr3_3:74801945-74801964 | None:intergenic | 25.0% |
| !! | TACTATAAGATTTTACCTTG+AGG | - | chr3_3:74802091-74802110 | None:intergenic | 25.0% |
| ! | TAGGTTCTTGTAAGTAAAAT+CGG | + | chr3_3:74802230-74802249 | Msa0472380:intron | 25.0% |
| ! | AATTCTTGTATTCTTGTTCT+GGG | + | chr3_3:74802325-74802344 | Msa0472380:intron | 25.0% |
| ! | AACTATAATCTATGTTGCAT+AGG | - | chr3_3:74802364-74802383 | None:intergenic | 25.0% |
| ! | CTATTCTCACATCATTATAA+AGG | + | chr3_3:74802744-74802763 | Msa0472380:intron | 25.0% |
| ! | GAATTACTTTATACCTTGTT+AGG | + | chr3_3:74803393-74803412 | Msa0472380:intron | 25.0% |
| ! | ATGAAAAACATAACCTAACA+AGG | - | chr3_3:74803409-74803428 | None:intergenic | 25.0% |
| ! | TTAATTAGTTAGTTCCATGA+TGG | - | chr3_3:74803743-74803762 | None:intergenic | 25.0% |
| TCAAATGGTTCATATTGCTT+GGG | - | chr3_3:74801654-74801673 | None:intergenic | 30.0% | |
| ATCAAATGGTTCATATTGCT+TGG | - | chr3_3:74801655-74801674 | None:intergenic | 30.0% | |
| TTAGATAGGTTAAACTCTAC+TGG | - | chr3_3:74801753-74801772 | None:intergenic | 30.0% | |
| GAGAGAAACAAAGATTAGAT+AGG | - | chr3_3:74801767-74801786 | None:intergenic | 30.0% | |
| !!! | CTGTTTTCTGTTTTTTCCTT+AGG | + | chr3_3:74801985-74802004 | Msa0472380:intron | 30.0% |
| ATCAGGTATATATTTGGTAC+AGG | - | chr3_3:74802263-74802282 | None:intergenic | 30.0% | |
| ACGAGTATCAGGTATATATT+TGG | - | chr3_3:74802269-74802288 | None:intergenic | 30.0% | |
| GAATTCTTGTATTCTTGTTC+TGG | + | chr3_3:74802324-74802343 | Msa0472380:intron | 30.0% | |
| TAATCTATGTTGCATAGGTA+CGG | - | chr3_3:74802359-74802378 | None:intergenic | 30.0% | |
| GACAATGCAATTACATGTAT+CGG | - | chr3_3:74802461-74802480 | None:intergenic | 30.0% | |
| !! | AGAAAGTGTCACAAATTTCA+GGG | + | chr3_3:74802845-74802864 | Msa0472380:intron | 30.0% |
| ATGTACATTGTGATTTCTCT+AGG | - | chr3_3:74802900-74802919 | None:intergenic | 30.0% | |
| AATCAACAGATAACATCAGA+GGG | - | chr3_3:74802971-74802990 | None:intergenic | 30.0% | |
| AAATCAACAGATAACATCAG+AGG | - | chr3_3:74802972-74802991 | None:intergenic | 30.0% | |
| CGTAGAGGAATTTAAACTAA+TGG | + | chr3_3:74803164-74803183 | Msa0472380:intron | 30.0% | |
| ATAATGGCAAAACAAGAACA+AGG | + | chr3_3:74803562-74803581 | Msa0472380:CDS | 30.0% | |
| TCAAATGGTTCATATTGCTT+GGG | - | chr3_3:74801654-74801673 | None:intergenic | 30.0% | |
| ATCAAATGGTTCATATTGCT+TGG | - | chr3_3:74801655-74801674 | None:intergenic | 30.0% | |
| TTAGATAGGTTAAACTCTAC+TGG | - | chr3_3:74801753-74801772 | None:intergenic | 30.0% | |
| GAGAGAAACAAAGATTAGAT+AGG | - | chr3_3:74801767-74801786 | None:intergenic | 30.0% | |
| !!! | CTGTTTTCTGTTTTTTCCTT+AGG | + | chr3_3:74801985-74802004 | Msa0472380:intron | 30.0% |
| ATCAGGTATATATTTGGTAC+AGG | - | chr3_3:74802263-74802282 | None:intergenic | 30.0% | |
| ACGAGTATCAGGTATATATT+TGG | - | chr3_3:74802269-74802288 | None:intergenic | 30.0% | |
| GAATTCTTGTATTCTTGTTC+TGG | + | chr3_3:74802324-74802343 | Msa0472380:intron | 30.0% | |
| TAATCTATGTTGCATAGGTA+CGG | - | chr3_3:74802359-74802378 | None:intergenic | 30.0% | |
| GACAATGCAATTACATGTAT+CGG | - | chr3_3:74802461-74802480 | None:intergenic | 30.0% | |
| !! | AGAAAGTGTCACAAATTTCA+GGG | + | chr3_3:74802845-74802864 | Msa0472380:intron | 30.0% |
| ATGTACATTGTGATTTCTCT+AGG | - | chr3_3:74802900-74802919 | None:intergenic | 30.0% | |
| AATCAACAGATAACATCAGA+GGG | - | chr3_3:74802971-74802990 | None:intergenic | 30.0% | |
| AAATCAACAGATAACATCAG+AGG | - | chr3_3:74802972-74802991 | None:intergenic | 30.0% | |
| CGTAGAGGAATTTAAACTAA+TGG | + | chr3_3:74803164-74803183 | Msa0472380:intron | 30.0% | |
| ATAATGGCAAAACAAGAACA+AGG | + | chr3_3:74803562-74803581 | Msa0472380:CDS | 30.0% | |
| ! | TCAGGTTTTCCATTTTCCAT+CGG | + | chr3_3:74801926-74801945 | Msa0472380:intron | 35.0% |
| ATATGGAATCCGATGGAAAA+TGG | - | chr3_3:74801938-74801957 | None:intergenic | 35.0% | |
| AGAACAAGGCATAGTACAAA+TGG | - | chr3_3:74802187-74802206 | None:intergenic | 35.0% | |
| AATCTATGTTGCATAGGTAC+GGG | - | chr3_3:74802358-74802377 | None:intergenic | 35.0% | |
| !!! | TATCGGTTTTGTTTCAGTGT+CGG | - | chr3_3:74802444-74802463 | None:intergenic | 35.0% |
| AAAGATAACCTATGAAGCAC+GGG | - | chr3_3:74802516-74802535 | None:intergenic | 35.0% | |
| CAAAGATAACCTATGAAGCA+CGG | - | chr3_3:74802517-74802536 | None:intergenic | 35.0% | |
| CAGTGCTTCATAGATAAGAA+TGG | - | chr3_3:74802562-74802581 | None:intergenic | 35.0% | |
| ! | GCAAAGTGCAATGCTAATTT+TGG | + | chr3_3:74802815-74802834 | Msa0472380:intron | 35.0% |
| !! | CAGAAAGTGTCACAAATTTC+AGG | + | chr3_3:74802844-74802863 | Msa0472380:intron | 35.0% |
| !! | TCTAGGTCAAAAAGCACTAT+AGG | - | chr3_3:74802883-74802902 | None:intergenic | 35.0% |
| !!! | TTTTTTGGACTTCGAGATGT+AGG | + | chr3_3:74802994-74803013 | Msa0472380:intron | 35.0% |
| ! | AAGTCCAAAGTGCTATCAAA+TGG | + | chr3_3:74803210-74803229 | Msa0472380:intron | 35.0% |
| ATAACGTAGGTCTCTGAATT+TGG | - | chr3_3:74803457-74803476 | None:intergenic | 35.0% | |
| TCAGAGACCTACGTTATATT+TGG | + | chr3_3:74803460-74803479 | Msa0472380:CDS | 35.0% | |
| CAGAGACCTACGTTATATTT+GGG | + | chr3_3:74803461-74803480 | Msa0472380:CDS | 35.0% | |
| AGAGACCTACGTTATATTTG+GGG | + | chr3_3:74803462-74803481 | Msa0472380:CDS | 35.0% | |
| ! | TCAGGTTTTCCATTTTCCAT+CGG | + | chr3_3:74801926-74801945 | Msa0472380:intron | 35.0% |
| ATATGGAATCCGATGGAAAA+TGG | - | chr3_3:74801938-74801957 | None:intergenic | 35.0% | |
| AGAACAAGGCATAGTACAAA+TGG | - | chr3_3:74802187-74802206 | None:intergenic | 35.0% | |
| AATCTATGTTGCATAGGTAC+GGG | - | chr3_3:74802358-74802377 | None:intergenic | 35.0% | |
| !!! | TATCGGTTTTGTTTCAGTGT+CGG | - | chr3_3:74802444-74802463 | None:intergenic | 35.0% |
| AAAGATAACCTATGAAGCAC+GGG | - | chr3_3:74802516-74802535 | None:intergenic | 35.0% | |
| CAAAGATAACCTATGAAGCA+CGG | - | chr3_3:74802517-74802536 | None:intergenic | 35.0% | |
| CAGTGCTTCATAGATAAGAA+TGG | - | chr3_3:74802562-74802581 | None:intergenic | 35.0% | |
| ! | GCAAAGTGCAATGCTAATTT+TGG | + | chr3_3:74802815-74802834 | Msa0472380:intron | 35.0% |
| !! | CAGAAAGTGTCACAAATTTC+AGG | + | chr3_3:74802844-74802863 | Msa0472380:intron | 35.0% |
| !! | TCTAGGTCAAAAAGCACTAT+AGG | - | chr3_3:74802883-74802902 | None:intergenic | 35.0% |
| !!! | TTTTTTGGACTTCGAGATGT+AGG | + | chr3_3:74802994-74803013 | Msa0472380:intron | 35.0% |
| ! | AAGTCCAAAGTGCTATCAAA+TGG | + | chr3_3:74803210-74803229 | Msa0472380:intron | 35.0% |
| ATAACGTAGGTCTCTGAATT+TGG | - | chr3_3:74803457-74803476 | None:intergenic | 35.0% | |
| TCAGAGACCTACGTTATATT+TGG | + | chr3_3:74803460-74803479 | Msa0472380:CDS | 35.0% | |
| CAGAGACCTACGTTATATTT+GGG | + | chr3_3:74803461-74803480 | Msa0472380:CDS | 35.0% | |
| AGAGACCTACGTTATATTTG+GGG | + | chr3_3:74803462-74803481 | Msa0472380:CDS | 35.0% | |
| ACCATTTGATGAGAAGAGAG+TGG | + | chr3_3:74801665-74801684 | Msa0472380:five_prime_UTR | 40.0% | |
| ACCACTCTCTTCTCATCAAA+TGG | - | chr3_3:74801669-74801688 | None:intergenic | 40.0% | |
| GCGAATGGATGAAAGAAATG+AGG | - | chr3_3:74801707-74801726 | None:intergenic | 40.0% | |
| TGTTTCTCTCTATCTCTCTC+CGG | + | chr3_3:74801777-74801796 | Msa0472380:five_prime_UTR | 40.0% | |
| TATTGCACTCTACTTTCACC+CGG | - | chr3_3:74801799-74801818 | None:intergenic | 40.0% | |
| AAATGGAAAACCTGAGGAAG+TGG | - | chr3_3:74801921-74801940 | None:intergenic | 40.0% | |
| GATGGAAAATGGAAAACCTG+AGG | - | chr3_3:74801927-74801946 | None:intergenic | 40.0% | |
| TCGTTATCATCCTCGACAAT+AGG | - | chr3_3:74802025-74802044 | None:intergenic | 40.0% | |
| ! | TGTACTATGCCTTGTTCTAG+AGG | + | chr3_3:74802189-74802208 | Msa0472380:intron | 40.0% |
| ! | GTACTATGCCTTGTTCTAGA+GGG | + | chr3_3:74802190-74802209 | Msa0472380:intron | 40.0% |
| !! | TAGATGTACCCTCTAGAACA+AGG | - | chr3_3:74802201-74802220 | None:intergenic | 40.0% |
| ! | AGAGGGTACATCTAAAACTC+AGG | + | chr3_3:74802207-74802226 | Msa0472380:intron | 40.0% |
| ! | GGTACATCTAAAACTCAGGT+AGG | + | chr3_3:74802211-74802230 | Msa0472380:intron | 40.0% |
| !!! | ATCGGTTTTGTTTCAGTGTC+GGG | - | chr3_3:74802443-74802462 | None:intergenic | 40.0% |
| TCGAAAAGCAATGTTGAAGC+TGG | + | chr3_3:74803059-74803078 | Msa0472380:CDS | 40.0% | |
| CGAAAAGCAATGTTGAAGCT+GGG | + | chr3_3:74803060-74803079 | Msa0472380:CDS | 40.0% | |
| CTGTTGTCAAATAGACGTAG+AGG | + | chr3_3:74803149-74803168 | Msa0472380:intron | 40.0% | |
| ! | GACACCATTTGATAGCACTT+TGG | - | chr3_3:74803217-74803236 | None:intergenic | 40.0% |
| GCTATTGTCATGTAGCACAA+TGG | + | chr3_3:74803244-74803263 | Msa0472380:intron | 40.0% | |
| CACGTTCTTTCTGTGATCTA+TGG | + | chr3_3:74803349-74803368 | Msa0472380:intron | 40.0% | |
| GTTCTTTCTGTGATCTATGG+TGG | + | chr3_3:74803352-74803371 | Msa0472380:intron | 40.0% | |
| TTTGGACTCTTGAAGACATC+AGG | - | chr3_3:74803439-74803458 | None:intergenic | 40.0% | |
| ATTTGGGGAGGCAAAAATAG+AGG | + | chr3_3:74803477-74803496 | Msa0472380:CDS | 40.0% | |
| GCCAGATATGGGATCTATAA+TGG | + | chr3_3:74803546-74803565 | Msa0472380:CDS | 40.0% | |
| GCCATTATAGATCCCATATC+TGG | - | chr3_3:74803550-74803569 | None:intergenic | 40.0% | |
| AAGGCTCTCAAAACTCACAA+TGG | + | chr3_3:74803703-74803722 | Msa0472380:CDS | 40.0% | |
| AGGCTCTCAAAACTCACAAT+GGG | + | chr3_3:74803704-74803723 | Msa0472380:CDS | 40.0% | |
| ACCATTTGATGAGAAGAGAG+TGG | + | chr3_3:74801665-74801684 | Msa0472380:five_prime_UTR | 40.0% | |
| ACCACTCTCTTCTCATCAAA+TGG | - | chr3_3:74801669-74801688 | None:intergenic | 40.0% | |
| GCGAATGGATGAAAGAAATG+AGG | - | chr3_3:74801707-74801726 | None:intergenic | 40.0% | |
| TGTTTCTCTCTATCTCTCTC+CGG | + | chr3_3:74801777-74801796 | Msa0472380:five_prime_UTR | 40.0% | |
| TATTGCACTCTACTTTCACC+CGG | - | chr3_3:74801799-74801818 | None:intergenic | 40.0% | |
| AAATGGAAAACCTGAGGAAG+TGG | - | chr3_3:74801921-74801940 | None:intergenic | 40.0% | |
| GATGGAAAATGGAAAACCTG+AGG | - | chr3_3:74801927-74801946 | None:intergenic | 40.0% | |
| TCGTTATCATCCTCGACAAT+AGG | - | chr3_3:74802025-74802044 | None:intergenic | 40.0% | |
| ! | TGTACTATGCCTTGTTCTAG+AGG | + | chr3_3:74802189-74802208 | Msa0472380:intron | 40.0% |
| ! | GTACTATGCCTTGTTCTAGA+GGG | + | chr3_3:74802190-74802209 | Msa0472380:intron | 40.0% |
| !! | TAGATGTACCCTCTAGAACA+AGG | - | chr3_3:74802201-74802220 | None:intergenic | 40.0% |
| ! | AGAGGGTACATCTAAAACTC+AGG | + | chr3_3:74802207-74802226 | Msa0472380:intron | 40.0% |
| ! | GGTACATCTAAAACTCAGGT+AGG | + | chr3_3:74802211-74802230 | Msa0472380:intron | 40.0% |
| !!! | ATCGGTTTTGTTTCAGTGTC+GGG | - | chr3_3:74802443-74802462 | None:intergenic | 40.0% |
| TCGAAAAGCAATGTTGAAGC+TGG | + | chr3_3:74803059-74803078 | Msa0472380:CDS | 40.0% | |
| CGAAAAGCAATGTTGAAGCT+GGG | + | chr3_3:74803060-74803079 | Msa0472380:CDS | 40.0% | |
| CTGTTGTCAAATAGACGTAG+AGG | + | chr3_3:74803149-74803168 | Msa0472380:intron | 40.0% | |
| ! | GACACCATTTGATAGCACTT+TGG | - | chr3_3:74803217-74803236 | None:intergenic | 40.0% |
| GCTATTGTCATGTAGCACAA+TGG | + | chr3_3:74803244-74803263 | Msa0472380:intron | 40.0% | |
| CACGTTCTTTCTGTGATCTA+TGG | + | chr3_3:74803349-74803368 | Msa0472380:intron | 40.0% | |
| GTTCTTTCTGTGATCTATGG+TGG | + | chr3_3:74803352-74803371 | Msa0472380:intron | 40.0% | |
| TTTGGACTCTTGAAGACATC+AGG | - | chr3_3:74803439-74803458 | None:intergenic | 40.0% | |
| ATTTGGGGAGGCAAAAATAG+AGG | + | chr3_3:74803477-74803496 | Msa0472380:CDS | 40.0% | |
| GCCAGATATGGGATCTATAA+TGG | + | chr3_3:74803546-74803565 | Msa0472380:CDS | 40.0% | |
| GCCATTATAGATCCCATATC+TGG | - | chr3_3:74803550-74803569 | None:intergenic | 40.0% | |
| AAGGCTCTCAAAACTCACAA+TGG | + | chr3_3:74803703-74803722 | Msa0472380:CDS | 40.0% | |
| AGGCTCTCAAAACTCACAAT+GGG | + | chr3_3:74803704-74803723 | Msa0472380:CDS | 40.0% | |
| GAGAAGAGAGTGGTGAATGA+AGG | + | chr3_3:74801675-74801694 | Msa0472380:five_prime_UTR | 45.0% | |
| GTTTCTCTCTATCTCTCTCC+GGG | + | chr3_3:74801778-74801797 | Msa0472380:five_prime_UTR | 45.0% | |
| ATATCGTTAGCCATGTCTCC+AGG | + | chr3_3:74801816-74801835 | Msa0472380:exon | 45.0% | |
| CAAGAACAAACCACTTCCTC+AGG | + | chr3_3:74801908-74801927 | Msa0472380:CDS | 45.0% | |
| ! | GGAGCATCATCTTCTTCCTA+AGG | - | chr3_3:74802004-74802023 | None:intergenic | 45.0% |
| AGATGATGCTCCTATTGTCG+AGG | + | chr3_3:74802012-74802031 | Msa0472380:CDS | 45.0% | |
| TGACGACAAAGACGAATCTG+AGG | + | chr3_3:74802045-74802064 | Msa0472380:CDS | 45.0% | |
| ACGATACACGTACGAGTATC+AGG | - | chr3_3:74802280-74802299 | None:intergenic | 45.0% | |
| ACTCGTACGTGTATCGTACT+TGG | + | chr3_3:74802283-74802302 | Msa0472380:intron | 45.0% | |
| CTCGTACGTGTATCGTACTT+GGG | + | chr3_3:74802284-74802303 | Msa0472380:intron | 45.0% | |
| ATTGACACGTGTCGAACAAC+GGG | - | chr3_3:74802419-74802438 | None:intergenic | 45.0% | |
| CATTGACACGTGTCGAACAA+CGG | - | chr3_3:74802420-74802439 | None:intergenic | 45.0% | |
| TGTCTGTGTCATGTTGCTGT+CGG | + | chr3_3:74802653-74802672 | Msa0472380:intron | 45.0% | |
| ! | TCAGAGGGCACACATGTATA+TGG | - | chr3_3:74802956-74802975 | None:intergenic | 45.0% |
| TTTGGACTTCGAGATGTAGG+TGG | + | chr3_3:74802997-74803016 | Msa0472380:intron | 45.0% | |
| CTGGGACTAAAACCCATTGA+TGG | + | chr3_3:74803078-74803097 | Msa0472380:CDS | 45.0% | |
| !! | AACCCATTGATGGCGTTACT+AGG | + | chr3_3:74803088-74803107 | Msa0472380:CDS | 45.0% |
| !! | ACCCATTGATGGCGTTACTA+GGG | + | chr3_3:74803089-74803108 | Msa0472380:CDS | 45.0% |
| ACCCTAGTAACGCCATCAAT+GGG | - | chr3_3:74803093-74803112 | None:intergenic | 45.0% | |
| TACCCTAGTAACGCCATCAA+TGG | - | chr3_3:74803094-74803113 | None:intergenic | 45.0% | |
| TCACGAATCGCGAAAGATAG+TGG | - | chr3_3:74803282-74803301 | None:intergenic | 45.0% | |
| !! | TCTGTGATCTATGGTGGATG+AGG | + | chr3_3:74803358-74803377 | Msa0472380:intron | 45.0% |
| GACCTACGTTATATTTGGGG+AGG | + | chr3_3:74803465-74803484 | Msa0472380:CDS | 45.0% | |
| TGCCTCCCCAAATATAACGT+AGG | - | chr3_3:74803470-74803489 | None:intergenic | 45.0% | |
| ACAGTTCAGGATGCCAGATA+TGG | + | chr3_3:74803534-74803553 | Msa0472380:CDS | 45.0% | |
| CAGTTCAGGATGCCAGATAT+GGG | + | chr3_3:74803535-74803554 | Msa0472380:CDS | 45.0% | |
| !! | GAAGAGGAGGTTGATGAAAC+TGG | + | chr3_3:74803616-74803635 | Msa0472380:CDS | 45.0% |
| CATTACCAGCTCAATGTCGT+GGG | - | chr3_3:74803650-74803669 | None:intergenic | 45.0% | |
| TCATTACCAGCTCAATGTCG+TGG | - | chr3_3:74803651-74803670 | None:intergenic | 45.0% | |
| ! | AGCTGGTAATGACACAAGCT+GGG | + | chr3_3:74803659-74803678 | Msa0472380:CDS | 45.0% |
| GGCTCTCAAAACTCACAATG+GGG | + | chr3_3:74803705-74803724 | Msa0472380:CDS | 45.0% | |
| ACTCACAATGGGGACATTGT+TGG | + | chr3_3:74803715-74803734 | Msa0472380:CDS | 45.0% | |
| GAGAAGAGAGTGGTGAATGA+AGG | + | chr3_3:74801675-74801694 | Msa0472380:five_prime_UTR | 45.0% | |
| GTTTCTCTCTATCTCTCTCC+GGG | + | chr3_3:74801778-74801797 | Msa0472380:five_prime_UTR | 45.0% | |
| ATATCGTTAGCCATGTCTCC+AGG | + | chr3_3:74801816-74801835 | Msa0472380:exon | 45.0% | |
| CAAGAACAAACCACTTCCTC+AGG | + | chr3_3:74801908-74801927 | Msa0472380:CDS | 45.0% | |
| ! | GGAGCATCATCTTCTTCCTA+AGG | - | chr3_3:74802004-74802023 | None:intergenic | 45.0% |
| AGATGATGCTCCTATTGTCG+AGG | + | chr3_3:74802012-74802031 | Msa0472380:CDS | 45.0% | |
| TGACGACAAAGACGAATCTG+AGG | + | chr3_3:74802045-74802064 | Msa0472380:CDS | 45.0% | |
| ACGATACACGTACGAGTATC+AGG | - | chr3_3:74802280-74802299 | None:intergenic | 45.0% | |
| ACTCGTACGTGTATCGTACT+TGG | + | chr3_3:74802283-74802302 | Msa0472380:intron | 45.0% | |
| CTCGTACGTGTATCGTACTT+GGG | + | chr3_3:74802284-74802303 | Msa0472380:intron | 45.0% | |
| ATTGACACGTGTCGAACAAC+GGG | - | chr3_3:74802419-74802438 | None:intergenic | 45.0% | |
| CATTGACACGTGTCGAACAA+CGG | - | chr3_3:74802420-74802439 | None:intergenic | 45.0% | |
| TGTCTGTGTCATGTTGCTGT+CGG | + | chr3_3:74802653-74802672 | Msa0472380:intron | 45.0% | |
| ! | TCAGAGGGCACACATGTATA+TGG | - | chr3_3:74802956-74802975 | None:intergenic | 45.0% |
| TTTGGACTTCGAGATGTAGG+TGG | + | chr3_3:74802997-74803016 | Msa0472380:intron | 45.0% | |
| CTGGGACTAAAACCCATTGA+TGG | + | chr3_3:74803078-74803097 | Msa0472380:CDS | 45.0% | |
| !! | AACCCATTGATGGCGTTACT+AGG | + | chr3_3:74803088-74803107 | Msa0472380:CDS | 45.0% |
| !! | ACCCATTGATGGCGTTACTA+GGG | + | chr3_3:74803089-74803108 | Msa0472380:CDS | 45.0% |
| ACCCTAGTAACGCCATCAAT+GGG | - | chr3_3:74803093-74803112 | None:intergenic | 45.0% | |
| TACCCTAGTAACGCCATCAA+TGG | - | chr3_3:74803094-74803113 | None:intergenic | 45.0% | |
| TCACGAATCGCGAAAGATAG+TGG | - | chr3_3:74803282-74803301 | None:intergenic | 45.0% | |
| !! | TCTGTGATCTATGGTGGATG+AGG | + | chr3_3:74803358-74803377 | Msa0472380:intron | 45.0% |
| GACCTACGTTATATTTGGGG+AGG | + | chr3_3:74803465-74803484 | Msa0472380:CDS | 45.0% | |
| TGCCTCCCCAAATATAACGT+AGG | - | chr3_3:74803470-74803489 | None:intergenic | 45.0% | |
| ACAGTTCAGGATGCCAGATA+TGG | + | chr3_3:74803534-74803553 | Msa0472380:CDS | 45.0% | |
| CAGTTCAGGATGCCAGATAT+GGG | + | chr3_3:74803535-74803554 | Msa0472380:CDS | 45.0% | |
| !! | GAAGAGGAGGTTGATGAAAC+TGG | + | chr3_3:74803616-74803635 | Msa0472380:CDS | 45.0% |
| CATTACCAGCTCAATGTCGT+GGG | - | chr3_3:74803650-74803669 | None:intergenic | 45.0% | |
| TCATTACCAGCTCAATGTCG+TGG | - | chr3_3:74803651-74803670 | None:intergenic | 45.0% | |
| ! | AGCTGGTAATGACACAAGCT+GGG | + | chr3_3:74803659-74803678 | Msa0472380:CDS | 45.0% |
| GGCTCTCAAAACTCACAATG+GGG | + | chr3_3:74803705-74803724 | Msa0472380:CDS | 45.0% | |
| ACTCACAATGGGGACATTGT+TGG | + | chr3_3:74803715-74803734 | Msa0472380:CDS | 45.0% | |
| CAACACTCAACACGTGCGAA+TGG | - | chr3_3:74801722-74801741 | None:intergenic | 50.0% | |
| ! | AATGATGGGACCTGGAGACA+TGG | - | chr3_3:74801829-74801848 | None:intergenic | 50.0% |
| ! | CTTGAGCGTTGTTTCGTCGA+CGG | - | chr3_3:74801892-74801911 | None:intergenic | 50.0% |
| GAAGACGACGAATCTCCTCA+AGG | + | chr3_3:74802073-74802092 | Msa0472380:CDS | 50.0% | |
| TGTCTTTGCCCGTGCTTCAT+AGG | + | chr3_3:74802505-74802524 | Msa0472380:intron | 50.0% | |
| GTCATGTTGCTGTCGGACAT+TGG | + | chr3_3:74802660-74802679 | Msa0472380:intron | 50.0% | |
| ! | CGAGATGTAGGTGGTACTGA+AGG | + | chr3_3:74803006-74803025 | Msa0472380:intron | 50.0% |
| TTCGCGATTCGTGATCGACA+AGG | + | chr3_3:74803288-74803307 | Msa0472380:intron | 50.0% | |
| !! | GTGATCTATGGTGGATGAGG+AGG | + | chr3_3:74803361-74803380 | Msa0472380:intron | 50.0% |
| CACAAGCTGCTCAACAGTTC+AGG | + | chr3_3:74803521-74803540 | Msa0472380:CDS | 50.0% | |
| TCAACCTCCTCTTCCTCTTC+AGG | - | chr3_3:74803610-74803629 | None:intergenic | 50.0% | |
| ! | GAGCTGGTAATGACACAAGC+TGG | + | chr3_3:74803658-74803677 | Msa0472380:CDS | 50.0% |
| ! | GCTGGTAATGACACAAGCTG+GGG | + | chr3_3:74803660-74803679 | Msa0472380:CDS | 50.0% |
| GTCAAAAGCCAAGGCTGTCA+AGG | + | chr3_3:74803684-74803703 | Msa0472380:CDS | 50.0% | |
| TTTGAGAGCCTTGACAGCCT+TGG | - | chr3_3:74803695-74803714 | None:intergenic | 50.0% | |
| !! | GGACATTGTTGGTGCCATCA+TGG | + | chr3_3:74803726-74803745 | Msa0472380:CDS | 50.0% |
| CAACACTCAACACGTGCGAA+TGG | - | chr3_3:74801722-74801741 | None:intergenic | 50.0% | |
| ! | AATGATGGGACCTGGAGACA+TGG | - | chr3_3:74801829-74801848 | None:intergenic | 50.0% |
| ! | CTTGAGCGTTGTTTCGTCGA+CGG | - | chr3_3:74801892-74801911 | None:intergenic | 50.0% |
| GAAGACGACGAATCTCCTCA+AGG | + | chr3_3:74802073-74802092 | Msa0472380:CDS | 50.0% | |
| TGTCTTTGCCCGTGCTTCAT+AGG | + | chr3_3:74802505-74802524 | Msa0472380:intron | 50.0% | |
| GTCATGTTGCTGTCGGACAT+TGG | + | chr3_3:74802660-74802679 | Msa0472380:intron | 50.0% | |
| ! | CGAGATGTAGGTGGTACTGA+AGG | + | chr3_3:74803006-74803025 | Msa0472380:intron | 50.0% |
| TTCGCGATTCGTGATCGACA+AGG | + | chr3_3:74803288-74803307 | Msa0472380:intron | 50.0% | |
| !! | GTGATCTATGGTGGATGAGG+AGG | + | chr3_3:74803361-74803380 | Msa0472380:intron | 50.0% |
| CACAAGCTGCTCAACAGTTC+AGG | + | chr3_3:74803521-74803540 | Msa0472380:CDS | 50.0% | |
| TCAACCTCCTCTTCCTCTTC+AGG | - | chr3_3:74803610-74803629 | None:intergenic | 50.0% | |
| ! | GAGCTGGTAATGACACAAGC+TGG | + | chr3_3:74803658-74803677 | Msa0472380:CDS | 50.0% |
| ! | GCTGGTAATGACACAAGCTG+GGG | + | chr3_3:74803660-74803679 | Msa0472380:CDS | 50.0% |
| GTCAAAAGCCAAGGCTGTCA+AGG | + | chr3_3:74803684-74803703 | Msa0472380:CDS | 50.0% | |
| TTTGAGAGCCTTGACAGCCT+TGG | - | chr3_3:74803695-74803714 | None:intergenic | 50.0% | |
| !! | GGACATTGTTGGTGCCATCA+TGG | + | chr3_3:74803726-74803745 | Msa0472380:CDS | 50.0% |
| TTGTTGGTCGGTGGCTTCGT+CGG | - | chr3_3:74801862-74801881 | None:intergenic | 55.0% | |
| GACGGAGGGAAGTTGTTGGT+CGG | - | chr3_3:74801874-74801893 | None:intergenic | 55.0% | |
| ! | AGCGTTGTTTCGTCGACGGA+GGG | - | chr3_3:74801888-74801907 | None:intergenic | 55.0% |
| GTTGCTGTCGGACATTGGCA+CGG | + | chr3_3:74802665-74802684 | Msa0472380:intron | 55.0% | |
| GTGTCTGCAACTGAGAGCTC+AGG | - | chr3_3:74803504-74803523 | None:intergenic | 55.0% | |
| !! | GAACAAGGTGCTGCAGCTGA+TGG | + | chr3_3:74803577-74803596 | Msa0472380:CDS | 55.0% |
| TGATGGAGCACAGCCTGAAG+AGG | + | chr3_3:74803594-74803613 | Msa0472380:CDS | 55.0% | |
| AGCACAGCCTGAAGAGGAAG+AGG | + | chr3_3:74803600-74803619 | Msa0472380:CDS | 55.0% | |
| ACAGCCTGAAGAGGAAGAGG+AGG | + | chr3_3:74803603-74803622 | Msa0472380:CDS | 55.0% | |
| !! | GGAGGTTGATGAAACTGGCG+TGG | + | chr3_3:74803621-74803640 | Msa0472380:CDS | 55.0% |
| !! | GGTTGATGAAACTGGCGTGG+AGG | + | chr3_3:74803624-74803643 | Msa0472380:CDS | 55.0% |
| ! | AGCTGGGGTGTCAAAAGCCA+AGG | + | chr3_3:74803675-74803694 | Msa0472380:CDS | 55.0% |
| TTGTTGGTCGGTGGCTTCGT+CGG | - | chr3_3:74801862-74801881 | None:intergenic | 55.0% | |
| GACGGAGGGAAGTTGTTGGT+CGG | - | chr3_3:74801874-74801893 | None:intergenic | 55.0% | |
| ! | AGCGTTGTTTCGTCGACGGA+GGG | - | chr3_3:74801888-74801907 | None:intergenic | 55.0% |
| GTTGCTGTCGGACATTGGCA+CGG | + | chr3_3:74802665-74802684 | Msa0472380:intron | 55.0% | |
| GTGTCTGCAACTGAGAGCTC+AGG | - | chr3_3:74803504-74803523 | None:intergenic | 55.0% | |
| !! | GAACAAGGTGCTGCAGCTGA+TGG | + | chr3_3:74803577-74803596 | Msa0472380:CDS | 55.0% |
| TGATGGAGCACAGCCTGAAG+AGG | + | chr3_3:74803594-74803613 | Msa0472380:CDS | 55.0% | |
| AGCACAGCCTGAAGAGGAAG+AGG | + | chr3_3:74803600-74803619 | Msa0472380:CDS | 55.0% | |
| ACAGCCTGAAGAGGAAGAGG+AGG | + | chr3_3:74803603-74803622 | Msa0472380:CDS | 55.0% | |
| !! | GGAGGTTGATGAAACTGGCG+TGG | + | chr3_3:74803621-74803640 | Msa0472380:CDS | 55.0% |
| !! | GGTTGATGAAACTGGCGTGG+AGG | + | chr3_3:74803624-74803643 | Msa0472380:CDS | 55.0% |
| ! | AGCTGGGGTGTCAAAAGCCA+AGG | + | chr3_3:74803675-74803694 | Msa0472380:CDS | 55.0% |
| ! | GCAGCGTCAATGATGGGACC+TGG | - | chr3_3:74801837-74801856 | None:intergenic | 60.0% |
| TCGGCGGCAGCGTCAATGAT+GGG | - | chr3_3:74801843-74801862 | None:intergenic | 60.0% | |
| GGAGGGAAGTTGTTGGTCGG+TGG | - | chr3_3:74801871-74801890 | None:intergenic | 60.0% | |
| CGTCGACGGAGGGAAGTTGT+TGG | - | chr3_3:74801878-74801897 | None:intergenic | 60.0% | |
| ! | GAGCGTTGTTTCGTCGACGG+AGG | - | chr3_3:74801889-74801908 | None:intergenic | 60.0% |
| ! | GCAGCGTCAATGATGGGACC+TGG | - | chr3_3:74801837-74801856 | None:intergenic | 60.0% |
| TCGGCGGCAGCGTCAATGAT+GGG | - | chr3_3:74801843-74801862 | None:intergenic | 60.0% | |
| GGAGGGAAGTTGTTGGTCGG+TGG | - | chr3_3:74801871-74801890 | None:intergenic | 60.0% | |
| CGTCGACGGAGGGAAGTTGT+TGG | - | chr3_3:74801878-74801897 | None:intergenic | 60.0% | |
| ! | GAGCGTTGTTTCGTCGACGG+AGG | - | chr3_3:74801889-74801908 | None:intergenic | 60.0% |
| GTCGGCGGCAGCGTCAATGA+TGG | - | chr3_3:74801844-74801863 | None:intergenic | 65.0% | |
| TTGGTCGGTGGCTTCGTCGG+CGG | - | chr3_3:74801859-74801878 | None:intergenic | 65.0% | |
| GGAGGCCCACGACATTGAGC+TGG | + | chr3_3:74803642-74803661 | Msa0472380:CDS | 65.0% | |
| GTCGGCGGCAGCGTCAATGA+TGG | - | chr3_3:74801844-74801863 | None:intergenic | 65.0% | |
| TTGGTCGGTGGCTTCGTCGG+CGG | - | chr3_3:74801859-74801878 | None:intergenic | 65.0% | |
| GGAGGCCCACGACATTGAGC+TGG | + | chr3_3:74803642-74803661 | Msa0472380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 74801635 | 74803762 | 74801635 | ID=Msa0472380;Name=Msa0472380 |
| chr3_3 | mRNA | 74801635 | 74803762 | 74801635 | ID=Msa0472380-mRNA-1;Parent=Msa0472380;Name=Msa0472380-mRNA-1;_AED=0.33;_eAED=0.33;_QI=173|0.75|0.6|1|0.75|0.6|5|0|210 |
| chr3_3 | exon | 74801635 | 74801738 | 74801635 | ID=Msa0472380-mRNA-1:exon:19189;Parent=Msa0472380-mRNA-1 |
| chr3_3 | exon | 74801759 | 74801929 | 74801759 | ID=Msa0472380-mRNA-1:exon:19190;Parent=Msa0472380-mRNA-1 |
| chr3_3 | exon | 74802007 | 74802094 | 74802007 | ID=Msa0472380-mRNA-1:exon:19191;Parent=Msa0472380-mRNA-1 |
| chr3_3 | exon | 74803016 | 74803110 | 74803016 | ID=Msa0472380-mRNA-1:exon:19192;Parent=Msa0472380-mRNA-1 |
| chr3_3 | exon | 74803415 | 74803762 | 74803415 | ID=Msa0472380-mRNA-1:exon:19193;Parent=Msa0472380-mRNA-1 |
| chr3_3 | five_prime_UTR | 74801635 | 74801738 | 74801635 | ID=Msa0472380-mRNA-1:five_prime_utr;Parent=Msa0472380-mRNA-1 |
| chr3_3 | five_prime_UTR | 74801759 | 74801827 | 74801759 | ID=Msa0472380-mRNA-1:five_prime_utr;Parent=Msa0472380-mRNA-1 |
| chr3_3 | CDS | 74801828 | 74801929 | 74801828 | ID=Msa0472380-mRNA-1:cds;Parent=Msa0472380-mRNA-1 |
| chr3_3 | CDS | 74802007 | 74802094 | 74802007 | ID=Msa0472380-mRNA-1:cds;Parent=Msa0472380-mRNA-1 |
| chr3_3 | CDS | 74803016 | 74803110 | 74803016 | ID=Msa0472380-mRNA-1:cds;Parent=Msa0472380-mRNA-1 |
| chr3_3 | CDS | 74803415 | 74803762 | 74803415 | ID=Msa0472380-mRNA-1:cds;Parent=Msa0472380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
