AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758750 MtrunA17_Chr5g0406301 98.522 203 3 0 1 203 1 203 4.48e-149 412
Msa0758750 MtrunA17_Chr7g0256341 45.930 172 93 0 14 185 51 222 7.23e-57 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758750 AT4G35750.1 75.369 203 49 1 1 203 1 202 1.96e-117 332
Msa0758750 AT3G10210.1 47.590 166 87 0 14 179 49 214 8.59e-54 172

Find 65 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTGATGGTGAATT+TGG 0.185149 5_2:+14110943 None:intergenic
AGTGATCATGCTAGGGTTTA+TGG 0.201786 5_2:-14109970 Msa0758750:CDS
ATCTCATAGGGTTTAGGATT+TGG 0.237359 5_2:-14109898 Msa0758750:exon
AGAAGAACTGCTTGAGAAAT+TGG 0.241731 5_2:-14110825 Msa0758750:CDS
TCTCATAGGGTTTAGGATTT+GGG 0.254159 5_2:-14109897 Msa0758750:exon
TCAGCAGAGTTGGTTATCTA+TGG 0.276388 5_2:-14110089 Msa0758750:CDS
GTTATCTATGGGAGAATGTT+AGG 0.282831 5_2:-14110077 Msa0758750:CDS
CATCTTGATATTAATAGTTA+TGG 0.321706 5_2:-14109608 Msa0758750:three_prime_UTR
TATCGTCCAATGATGGATTA+TGG 0.323869 5_2:-14110000 Msa0758750:CDS
GGCCAAACGTAGCGAGAAAA+AGG 0.325265 5_2:+14110418 None:intergenic
AGGTGTATCTCATAGGGTTT+AGG 0.338603 5_2:-14109904 Msa0758750:exon
CGCAAGATTCTCCGCATTAT+CGG 0.351043 5_2:-14110767 Msa0758750:CDS
CTCCATGAGGTGTATCTCAT+AGG 0.352468 5_2:-14109911 Msa0758750:exon
AATTTCTTCTTCCCTAGCTT+CGG 0.354119 5_2:+14110588 None:intergenic
ATCGGTTTACGATGCGATTC+CGG 0.372506 5_2:-14110499 Msa0758750:CDS
ACAGAGCTTTCAAATAGTTA+TGG 0.379055 5_2:-14109747 Msa0758750:three_prime_UTR
ATACGATCATGATGAAGATT+TGG 0.383633 5_2:-14110025 Msa0758750:CDS
TTCTTGTTCAAGCTCAGTTA+TGG 0.385949 5_2:+14110844 None:intergenic
ACATTATATCTCAATAACTA+TGG 0.395608 5_2:+14109720 None:intergenic
TGCGTAGTGATAGAAGAAAA+AGG 0.406840 5_2:+14110893 None:intergenic
GAGGAACGAAGTGGAGATTC+CGG 0.411726 5_2:-14110055 Msa0758750:CDS
ATTTCTTCTTCCCTAGCTTC+GGG 0.419960 5_2:+14110589 None:intergenic
CGGAATTTCTTCTCTCCGAT+CGG 0.427792 5_2:-14110517 Msa0758750:CDS
CGATCGGAGAGAAGAAATTC+CGG 0.432814 5_2:+14110518 None:intergenic
AGATTCTCCTTCACGTTCGC+CGG 0.437993 5_2:+14110480 None:intergenic
TCTAATCCATAATCCATCAT+TGG 0.455280 5_2:+14109994 None:intergenic
TTTGGAGTATCGTCCAATGA+TGG 0.485084 5_2:-14110007 Msa0758750:CDS
GTTCACTGTAGTCGTTGGAT+TGG 0.491143 5_2:-14109875 Msa0758750:three_prime_UTR
TTTGGGTTCACTGTAGTCGT+TGG 0.495682 5_2:-14109880 Msa0758750:three_prime_UTR
TTGGGTGTGATAGGTTGTAC+AGG 0.501143 5_2:-14110125 Msa0758750:intron
GATGGTGAATTTGGATGGAT+AGG 0.507550 5_2:+14110952 None:intergenic
GATTAGAGAGTGATCATGCT+AGG 0.515483 5_2:-14109978 Msa0758750:CDS
TCCATGAGGTGTATCTCATA+GGG 0.515766 5_2:-14109910 Msa0758750:exon
CTGAGGTACATCAGCAGAGT+TGG 0.517318 5_2:-14110099 Msa0758750:CDS
ACCCAGCGTTGAAGAGAAAA+CGG 0.517837 5_2:+14110397 None:intergenic
CAAGACCTAAAGAAAACAAA+AGG 0.523861 5_2:+14109667 None:intergenic
TTGGAAGTCTTCAAAATCAA+AGG 0.533957 5_2:-14110806 Msa0758750:CDS
AGCGCGATTGGTTAGCGTTG+AGG 0.536404 5_2:-14110643 Msa0758750:CDS
ATGGTGAATTTGGATGGATA+GGG 0.536686 5_2:+14110953 None:intergenic
TTGTTCAAGCTCAGTTATGG+TGG 0.540444 5_2:+14110847 None:intergenic
CAGCAGAGTTGGTTATCTAT+GGG 0.551346 5_2:-14110088 Msa0758750:CDS
GAGCTTTCAAATAGTTATGG+AGG 0.553818 5_2:-14109744 Msa0758750:three_prime_UTR
GTCACAGGCGAATCTAGTGC+AGG 0.559387 5_2:+14109940 None:intergenic
AAAAGGCGAGCTTGTAAACC+AGG 0.560268 5_2:+14110435 None:intergenic
ATTGTGATGGTGAATTTGGA+TGG 0.571335 5_2:+14110947 None:intergenic
ATTATCGGAAAATTCTTCCC+TGG 0.573008 5_2:-14110752 Msa0758750:intron
TTGATATTAATAGTTATGGA+AGG 0.590651 5_2:-14109604 Msa0758750:three_prime_UTR
TGCGATTCCGGCGAACGTGA+AGG 0.593355 5_2:-14110487 Msa0758750:CDS
AGCTTTCAAATAGTTATGGA+GGG 0.593526 5_2:-14109743 Msa0758750:three_prime_UTR
ATTAGAGAGTGATCATGCTA+GGG 0.594329 5_2:-14109977 Msa0758750:CDS
CTCATGGAGTAAGTAGTCAC+AGG 0.597762 5_2:+14109925 None:intergenic
ACCCTATGAGATACACCTCA+TGG 0.597933 5_2:+14109909 None:intergenic
TCATGATCGTATACGAACTC+CGG 0.600493 5_2:+14110036 None:intergenic
GAATGTTAGGAGGAACGAAG+TGG 0.610161 5_2:-14110064 Msa0758750:CDS
CGATAATGCGGAGAATCTTG+CGG 0.614669 5_2:+14110768 None:intergenic
CGTGATGATTATGATTGTGA+TGG 0.623135 5_2:+14110934 None:intergenic
ATATTCACACCGGCGTTCAG+AGG 0.623653 5_2:-14110554 Msa0758750:CDS
ATCAAAGGCAAAGATAAGCA+TGG 0.637350 5_2:-14110791 Msa0758750:CDS
GAATCGCATCGTAAACCGAT+CGG 0.641309 5_2:+14110502 None:intergenic
ATCTATGGGAGAATGTTAGG+AGG 0.655849 5_2:-14110074 Msa0758750:CDS
ATAGGTTGTACAGGAAGCTG+AGG 0.667654 5_2:-14110116 Msa0758750:intron
ATTCTCGCTCCTCTGAACGC+CGG 0.670180 5_2:+14110545 None:intergenic
GCTAGGGAAGAAGAAATTCG+CGG 0.672425 5_2:-14110583 Msa0758750:CDS
CTGTGACTACTTACTCCATG+AGG 0.695115 5_2:-14109924 Msa0758750:CDS
GCGGTGTTGTATATTCACAC+CGG 0.721011 5_2:-14110564 Msa0758750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATCACATATATAA+CGG + chr5_2:14109810-14109829 None:intergenic 15.0%
!!! GATATTTTCATTTTTTTTGT+TGG - chr5_2:14110929-14110948 Msa0758750:five_prime_UTR 15.0%
!! AACAAAAATCACATATATAA+CGG + chr5_2:14109810-14109829 None:intergenic 15.0%
!!! GATATTTTCATTTTTTTTGT+TGG - chr5_2:14110929-14110948 Msa0758750:five_prime_UTR 15.0%
!!! AACTGAAATAATTTTTACCA+GGG + chr5_2:14109779-14109798 None:intergenic 20.0%
!!! AAACTGAAATAATTTTTACC+AGG + chr5_2:14109780-14109799 None:intergenic 20.0%
!!! GATTAATTTAAAGCTGATTT+AGG + chr5_2:14110197-14110216 None:intergenic 20.0%
!! AAATTAATGAAGTTGTTTGT+AGG - chr5_2:14110317-14110336 Msa0758750:intron 20.0%
!!! TATTAATCGGAAGTTTTAAT+TGG - chr5_2:14110346-14110365 Msa0758750:intron 20.0%
!! ACATTATATCTCAATAACTA+TGG + chr5_2:14110794-14110813 None:intergenic 20.0%
!! CATCTTGATATTAATAGTTA+TGG - chr5_2:14110903-14110922 Msa0758750:five_prime_UTR 20.0%
!! TTGATATTAATAGTTATGGA+AGG - chr5_2:14110907-14110926 Msa0758750:five_prime_UTR 20.0%
!!! TTTTTTGTTGGATAATTCAA+TGG - chr5_2:14110941-14110960 Msa0758750:five_prime_UTR 20.0%
!!! AACTGAAATAATTTTTACCA+GGG + chr5_2:14109779-14109798 None:intergenic 20.0%
!!! AAACTGAAATAATTTTTACC+AGG + chr5_2:14109780-14109799 None:intergenic 20.0%
!!! GATTAATTTAAAGCTGATTT+AGG + chr5_2:14110197-14110216 None:intergenic 20.0%
!! AAATTAATGAAGTTGTTTGT+AGG - chr5_2:14110317-14110336 Msa0758750:intron 20.0%
!!! TATTAATCGGAAGTTTTAAT+TGG - chr5_2:14110346-14110365 Msa0758750:intron 20.0%
!! ACATTATATCTCAATAACTA+TGG + chr5_2:14110794-14110813 None:intergenic 20.0%
!! CATCTTGATATTAATAGTTA+TGG - chr5_2:14110903-14110922 Msa0758750:five_prime_UTR 20.0%
!! TTGATATTAATAGTTATGGA+AGG - chr5_2:14110907-14110926 Msa0758750:five_prime_UTR 20.0%
!!! TTTTTTGTTGGATAATTCAA+TGG - chr5_2:14110941-14110960 Msa0758750:five_prime_UTR 20.0%
! TTGTAGGTTTCGTTATTAAT+CGG - chr5_2:14110333-14110352 Msa0758750:intron 25.0%
!!! AAGTTTTAATTGGCTAATGT+TGG - chr5_2:14110356-14110375 Msa0758750:intron 25.0%
!!! AGTTTTAATTGGCTAATGTT+GGG - chr5_2:14110357-14110376 Msa0758750:intron 25.0%
! TTGTAGGTTTCGTTATTAAT+CGG - chr5_2:14110333-14110352 Msa0758750:intron 25.0%
!!! AAGTTTTAATTGGCTAATGT+TGG - chr5_2:14110356-14110375 Msa0758750:intron 25.0%
!!! AGTTTTAATTGGCTAATGTT+GGG - chr5_2:14110357-14110376 Msa0758750:intron 25.0%
! TATGATTGTGATGGTGAATT+TGG + chr5_2:14109571-14109590 None:intergenic 30.0%
TTGGAAGTCTTCAAAATCAA+AGG - chr5_2:14109705-14109724 Msa0758750:three_prime_UTR 30.0%
!!! GCTGTTTATTTTATTCATCC+TGG - chr5_2:14110058-14110077 Msa0758750:CDS 30.0%
ATACGATCATGATGAAGATT+TGG - chr5_2:14110486-14110505 Msa0758750:CDS 30.0%
TCTAATCCATAATCCATCAT+TGG + chr5_2:14110520-14110539 None:intergenic 30.0%
ACAGAGCTTTCAAATAGTTA+TGG - chr5_2:14110764-14110783 Msa0758750:CDS 30.0%
AGCTTTCAAATAGTTATGGA+GGG - chr5_2:14110768-14110787 Msa0758750:CDS 30.0%
!!! TGTTGCCTTTTGTTTTCTTT+AGG - chr5_2:14110839-14110858 Msa0758750:CDS 30.0%
CAAGACCTAAAGAAAACAAA+AGG + chr5_2:14110847-14110866 None:intergenic 30.0%
! TATGATTGTGATGGTGAATT+TGG + chr5_2:14109571-14109590 None:intergenic 30.0%
TTGGAAGTCTTCAAAATCAA+AGG - chr5_2:14109705-14109724 Msa0758750:three_prime_UTR 30.0%
!!! GCTGTTTATTTTATTCATCC+TGG - chr5_2:14110058-14110077 Msa0758750:CDS 30.0%
ATACGATCATGATGAAGATT+TGG - chr5_2:14110486-14110505 Msa0758750:CDS 30.0%
TCTAATCCATAATCCATCAT+TGG + chr5_2:14110520-14110539 None:intergenic 30.0%
ACAGAGCTTTCAAATAGTTA+TGG - chr5_2:14110764-14110783 Msa0758750:CDS 30.0%
AGCTTTCAAATAGTTATGGA+GGG - chr5_2:14110768-14110787 Msa0758750:CDS 30.0%
!!! TGTTGCCTTTTGTTTTCTTT+AGG - chr5_2:14110839-14110858 Msa0758750:CDS 30.0%
CAAGACCTAAAGAAAACAAA+AGG + chr5_2:14110847-14110866 None:intergenic 30.0%
ATGGTGAATTTGGATGGATA+GGG + chr5_2:14109561-14109580 None:intergenic 35.0%
! ATTGTGATGGTGAATTTGGA+TGG + chr5_2:14109567-14109586 None:intergenic 35.0%
CGTGATGATTATGATTGTGA+TGG + chr5_2:14109580-14109599 None:intergenic 35.0%
TGCGTAGTGATAGAAGAAAA+AGG + chr5_2:14109621-14109640 None:intergenic 35.0%
TTCTTGTTCAAGCTCAGTTA+TGG + chr5_2:14109670-14109689 None:intergenic 35.0%
AGAAGAACTGCTTGAGAAAT+TGG - chr5_2:14109686-14109705 Msa0758750:three_prime_UTR 35.0%
ATCAAAGGCAAAGATAAGCA+TGG - chr5_2:14109720-14109739 Msa0758750:three_prime_UTR 35.0%
! GGAAGAATTTTCCGATAATG+CGG + chr5_2:14109758-14109777 None:intergenic 35.0%
ATTATCGGAAAATTCTTCCC+TGG - chr5_2:14109759-14109778 Msa0758750:three_prime_UTR 35.0%
!!! ATTTTTTGATTCAGCGCGAT+TGG - chr5_2:14109856-14109875 Msa0758750:three_prime_UTR 35.0%
!!! TGAGGTTCTGAAGAAGTTTT+TGG - chr5_2:14109886-14109905 Msa0758750:three_prime_UTR 35.0%
AATTTCTTCTTCCCTAGCTT+CGG + chr5_2:14109926-14109945 None:intergenic 35.0%
!!! GCTAATGTTGGGTTTTGATT+GGG - chr5_2:14110368-14110387 Msa0758750:intron 35.0%
GTTATCTATGGGAGAATGTT+AGG - chr5_2:14110434-14110453 Msa0758750:CDS 35.0%
!! TATCGTCCAATGATGGATTA+TGG - chr5_2:14110511-14110530 Msa0758750:CDS 35.0%
ATTAGAGAGTGATCATGCTA+GGG - chr5_2:14110534-14110553 Msa0758750:CDS 35.0%
! ATCTCATAGGGTTTAGGATT+TGG - chr5_2:14110613-14110632 Msa0758750:CDS 35.0%
! TCTCATAGGGTTTAGGATTT+GGG - chr5_2:14110614-14110633 Msa0758750:CDS 35.0%
GAGCTTTCAAATAGTTATGG+AGG - chr5_2:14110767-14110786 Msa0758750:CDS 35.0%
ATGGTGAATTTGGATGGATA+GGG + chr5_2:14109561-14109580 None:intergenic 35.0%
! ATTGTGATGGTGAATTTGGA+TGG + chr5_2:14109567-14109586 None:intergenic 35.0%
CGTGATGATTATGATTGTGA+TGG + chr5_2:14109580-14109599 None:intergenic 35.0%
TGCGTAGTGATAGAAGAAAA+AGG + chr5_2:14109621-14109640 None:intergenic 35.0%
TTCTTGTTCAAGCTCAGTTA+TGG + chr5_2:14109670-14109689 None:intergenic 35.0%
AGAAGAACTGCTTGAGAAAT+TGG - chr5_2:14109686-14109705 Msa0758750:three_prime_UTR 35.0%
ATCAAAGGCAAAGATAAGCA+TGG - chr5_2:14109720-14109739 Msa0758750:three_prime_UTR 35.0%
! GGAAGAATTTTCCGATAATG+CGG + chr5_2:14109758-14109777 None:intergenic 35.0%
ATTATCGGAAAATTCTTCCC+TGG - chr5_2:14109759-14109778 Msa0758750:three_prime_UTR 35.0%
!!! ATTTTTTGATTCAGCGCGAT+TGG - chr5_2:14109856-14109875 Msa0758750:three_prime_UTR 35.0%
!!! TGAGGTTCTGAAGAAGTTTT+TGG - chr5_2:14109886-14109905 Msa0758750:three_prime_UTR 35.0%
AATTTCTTCTTCCCTAGCTT+CGG + chr5_2:14109926-14109945 None:intergenic 35.0%
!!! GCTAATGTTGGGTTTTGATT+GGG - chr5_2:14110368-14110387 Msa0758750:intron 35.0%
GTTATCTATGGGAGAATGTT+AGG - chr5_2:14110434-14110453 Msa0758750:CDS 35.0%
!! TATCGTCCAATGATGGATTA+TGG - chr5_2:14110511-14110530 Msa0758750:CDS 35.0%
ATTAGAGAGTGATCATGCTA+GGG - chr5_2:14110534-14110553 Msa0758750:CDS 35.0%
! ATCTCATAGGGTTTAGGATT+TGG - chr5_2:14110613-14110632 Msa0758750:CDS 35.0%
! TCTCATAGGGTTTAGGATTT+GGG - chr5_2:14110614-14110633 Msa0758750:CDS 35.0%
GAGCTTTCAAATAGTTATGG+AGG - chr5_2:14110767-14110786 Msa0758750:CDS 35.0%
GATGGTGAATTTGGATGGAT+AGG + chr5_2:14109562-14109581 None:intergenic 40.0%
TTGTTCAAGCTCAGTTATGG+TGG + chr5_2:14109667-14109686 None:intergenic 40.0%
!!! GGTTCTGAAGAAGTTTTTGG+AGG - chr5_2:14109889-14109908 Msa0758750:three_prime_UTR 40.0%
!! TGAAGAAGTTTTTGGAGGAG+AGG - chr5_2:14109894-14109913 Msa0758750:exon 40.0%
ATTTCTTCTTCCCTAGCTTC+GGG + chr5_2:14109925-14109944 None:intergenic 40.0%
!! GGCTAATGTTGGGTTTTGAT+TGG - chr5_2:14110367-14110386 Msa0758750:intron 40.0%
! TCAGCAGAGTTGGTTATCTA+TGG - chr5_2:14110422-14110441 Msa0758750:CDS 40.0%
! CAGCAGAGTTGGTTATCTAT+GGG - chr5_2:14110423-14110442 Msa0758750:CDS 40.0%
ATCTATGGGAGAATGTTAGG+AGG - chr5_2:14110437-14110456 Msa0758750:CDS 40.0%
TCATGATCGTATACGAACTC+CGG + chr5_2:14110478-14110497 None:intergenic 40.0%
!! TTTGGAGTATCGTCCAATGA+TGG - chr5_2:14110504-14110523 Msa0758750:CDS 40.0%
GATTAGAGAGTGATCATGCT+AGG - chr5_2:14110533-14110552 Msa0758750:CDS 40.0%
AGTGATCATGCTAGGGTTTA+TGG - chr5_2:14110541-14110560 Msa0758750:CDS 40.0%
TCCATGAGGTGTATCTCATA+GGG - chr5_2:14110601-14110620 Msa0758750:CDS 40.0%
AGGTGTATCTCATAGGGTTT+AGG - chr5_2:14110607-14110626 Msa0758750:CDS 40.0%
GATGGTGAATTTGGATGGAT+AGG + chr5_2:14109562-14109581 None:intergenic 40.0%
TTGTTCAAGCTCAGTTATGG+TGG + chr5_2:14109667-14109686 None:intergenic 40.0%
!!! GGTTCTGAAGAAGTTTTTGG+AGG - chr5_2:14109889-14109908 Msa0758750:three_prime_UTR 40.0%
!! TGAAGAAGTTTTTGGAGGAG+AGG - chr5_2:14109894-14109913 Msa0758750:exon 40.0%
ATTTCTTCTTCCCTAGCTTC+GGG + chr5_2:14109925-14109944 None:intergenic 40.0%
!! GGCTAATGTTGGGTTTTGAT+TGG - chr5_2:14110367-14110386 Msa0758750:intron 40.0%
! TCAGCAGAGTTGGTTATCTA+TGG - chr5_2:14110422-14110441 Msa0758750:CDS 40.0%
! CAGCAGAGTTGGTTATCTAT+GGG - chr5_2:14110423-14110442 Msa0758750:CDS 40.0%
ATCTATGGGAGAATGTTAGG+AGG - chr5_2:14110437-14110456 Msa0758750:CDS 40.0%
TCATGATCGTATACGAACTC+CGG + chr5_2:14110478-14110497 None:intergenic 40.0%
!! TTTGGAGTATCGTCCAATGA+TGG - chr5_2:14110504-14110523 Msa0758750:CDS 40.0%
GATTAGAGAGTGATCATGCT+AGG - chr5_2:14110533-14110552 Msa0758750:CDS 40.0%
AGTGATCATGCTAGGGTTTA+TGG - chr5_2:14110541-14110560 Msa0758750:CDS 40.0%
TCCATGAGGTGTATCTCATA+GGG - chr5_2:14110601-14110620 Msa0758750:CDS 40.0%
AGGTGTATCTCATAGGGTTT+AGG - chr5_2:14110607-14110626 Msa0758750:CDS 40.0%
CGATAATGCGGAGAATCTTG+CGG + chr5_2:14109746-14109765 None:intergenic 45.0%
CGCAAGATTCTCCGCATTAT+CGG - chr5_2:14109744-14109763 Msa0758750:three_prime_UTR 45.0%
! AGAGGATTTTCCCGAAGCTA+GGG - chr5_2:14109912-14109931 Msa0758750:CDS 45.0%
GCTAGGGAAGAAGAAATTCG+CGG - chr5_2:14109928-14109947 Msa0758750:CDS 45.0%
!! GCGGTGTTGTATATTCACAC+CGG - chr5_2:14109947-14109966 Msa0758750:CDS 45.0%
CGATCGGAGAGAAGAAATTC+CGG + chr5_2:14109996-14110015 None:intergenic 45.0%
CGGAATTTCTTCTCTCCGAT+CGG - chr5_2:14109994-14110013 Msa0758750:CDS 45.0%
GAATCGCATCGTAAACCGAT+CGG + chr5_2:14110012-14110031 None:intergenic 45.0%
! ATCGGTTTACGATGCGATTC+CGG - chr5_2:14110012-14110031 Msa0758750:CDS 45.0%
AAAAGGCGAGCTTGTAAACC+AGG + chr5_2:14110079-14110098 None:intergenic 45.0%
! ACCCAGCGTTGAAGAGAAAA+CGG + chr5_2:14110117-14110136 None:intergenic 45.0%
!!! GGGTTTTGATTGGGTGTGAT+AGG - chr5_2:14110377-14110396 Msa0758750:intron 45.0%
TTGGGTGTGATAGGTTGTAC+AGG - chr5_2:14110386-14110405 Msa0758750:intron 45.0%
ATAGGTTGTACAGGAAGCTG+AGG - chr5_2:14110395-14110414 Msa0758750:intron 45.0%
GAATGTTAGGAGGAACGAAG+TGG - chr5_2:14110447-14110466 Msa0758750:CDS 45.0%
CTCATGGAGTAAGTAGTCAC+AGG + chr5_2:14110589-14110608 None:intergenic 45.0%
CTGTGACTACTTACTCCATG+AGG - chr5_2:14110587-14110606 Msa0758750:CDS 45.0%
CTCCATGAGGTGTATCTCAT+AGG - chr5_2:14110600-14110619 Msa0758750:CDS 45.0%
ACCCTATGAGATACACCTCA+TGG + chr5_2:14110605-14110624 None:intergenic 45.0%
! TTTGGGTTCACTGTAGTCGT+TGG - chr5_2:14110631-14110650 Msa0758750:CDS 45.0%
GTTCACTGTAGTCGTTGGAT+TGG - chr5_2:14110636-14110655 Msa0758750:CDS 45.0%
CGATAATGCGGAGAATCTTG+CGG + chr5_2:14109746-14109765 None:intergenic 45.0%
CGCAAGATTCTCCGCATTAT+CGG - chr5_2:14109744-14109763 Msa0758750:three_prime_UTR 45.0%
! AGAGGATTTTCCCGAAGCTA+GGG - chr5_2:14109912-14109931 Msa0758750:CDS 45.0%
GCTAGGGAAGAAGAAATTCG+CGG - chr5_2:14109928-14109947 Msa0758750:CDS 45.0%
!! GCGGTGTTGTATATTCACAC+CGG - chr5_2:14109947-14109966 Msa0758750:CDS 45.0%
CGATCGGAGAGAAGAAATTC+CGG + chr5_2:14109996-14110015 None:intergenic 45.0%
CGGAATTTCTTCTCTCCGAT+CGG - chr5_2:14109994-14110013 Msa0758750:CDS 45.0%
GAATCGCATCGTAAACCGAT+CGG + chr5_2:14110012-14110031 None:intergenic 45.0%
! ATCGGTTTACGATGCGATTC+CGG - chr5_2:14110012-14110031 Msa0758750:CDS 45.0%
AAAAGGCGAGCTTGTAAACC+AGG + chr5_2:14110079-14110098 None:intergenic 45.0%
! ACCCAGCGTTGAAGAGAAAA+CGG + chr5_2:14110117-14110136 None:intergenic 45.0%
!!! GGGTTTTGATTGGGTGTGAT+AGG - chr5_2:14110377-14110396 Msa0758750:intron 45.0%
TTGGGTGTGATAGGTTGTAC+AGG - chr5_2:14110386-14110405 Msa0758750:intron 45.0%
ATAGGTTGTACAGGAAGCTG+AGG - chr5_2:14110395-14110414 Msa0758750:intron 45.0%
GAATGTTAGGAGGAACGAAG+TGG - chr5_2:14110447-14110466 Msa0758750:CDS 45.0%
CTCATGGAGTAAGTAGTCAC+AGG + chr5_2:14110589-14110608 None:intergenic 45.0%
CTGTGACTACTTACTCCATG+AGG - chr5_2:14110587-14110606 Msa0758750:CDS 45.0%
CTCCATGAGGTGTATCTCAT+AGG - chr5_2:14110600-14110619 Msa0758750:CDS 45.0%
ACCCTATGAGATACACCTCA+TGG + chr5_2:14110605-14110624 None:intergenic 45.0%
! TTTGGGTTCACTGTAGTCGT+TGG - chr5_2:14110631-14110650 Msa0758750:CDS 45.0%
GTTCACTGTAGTCGTTGGAT+TGG - chr5_2:14110636-14110655 Msa0758750:CDS 45.0%
! GAGAGGATTTTCCCGAAGCT+AGG - chr5_2:14109911-14109930 Msa0758750:exon 50.0%
ATATTCACACCGGCGTTCAG+AGG - chr5_2:14109957-14109976 Msa0758750:CDS 50.0%
! CAGAGGAGCGAGAATTTTGC+CGG - chr5_2:14109974-14109993 Msa0758750:CDS 50.0%
AGATTCTCCTTCACGTTCGC+CGG + chr5_2:14110034-14110053 None:intergenic 50.0%
! CGCCTTTTTCTCGCTACGTT+TGG - chr5_2:14110091-14110110 Msa0758750:CDS 50.0%
GGCCAAACGTAGCGAGAAAA+AGG + chr5_2:14110096-14110115 None:intergenic 50.0%
!! GCCGTTTTCTCTTCAACGCT+GGG - chr5_2:14110113-14110132 Msa0758750:CDS 50.0%
CTGAGGTACATCAGCAGAGT+TGG - chr5_2:14110412-14110431 Msa0758750:CDS 50.0%
GAGGAACGAAGTGGAGATTC+CGG - chr5_2:14110456-14110475 Msa0758750:CDS 50.0%
! GAGAGGATTTTCCCGAAGCT+AGG - chr5_2:14109911-14109930 Msa0758750:exon 50.0%
ATATTCACACCGGCGTTCAG+AGG - chr5_2:14109957-14109976 Msa0758750:CDS 50.0%
! CAGAGGAGCGAGAATTTTGC+CGG - chr5_2:14109974-14109993 Msa0758750:CDS 50.0%
AGATTCTCCTTCACGTTCGC+CGG + chr5_2:14110034-14110053 None:intergenic 50.0%
! CGCCTTTTTCTCGCTACGTT+TGG - chr5_2:14110091-14110110 Msa0758750:CDS 50.0%
GGCCAAACGTAGCGAGAAAA+AGG + chr5_2:14110096-14110115 None:intergenic 50.0%
!! GCCGTTTTCTCTTCAACGCT+GGG - chr5_2:14110113-14110132 Msa0758750:CDS 50.0%
CTGAGGTACATCAGCAGAGT+TGG - chr5_2:14110412-14110431 Msa0758750:CDS 50.0%
GAGGAACGAAGTGGAGATTC+CGG - chr5_2:14110456-14110475 Msa0758750:CDS 50.0%
! AGCGCGATTGGTTAGCGTTG+AGG - chr5_2:14109868-14109887 Msa0758750:three_prime_UTR 55.0%
ATTCTCGCTCCTCTGAACGC+CGG + chr5_2:14109969-14109988 None:intergenic 55.0%
!! GGCCGTTTTCTCTTCAACGC+TGG - chr5_2:14110112-14110131 Msa0758750:CDS 55.0%
GTCACAGGCGAATCTAGTGC+AGG + chr5_2:14110574-14110593 None:intergenic 55.0%
! AGCGCGATTGGTTAGCGTTG+AGG - chr5_2:14109868-14109887 Msa0758750:three_prime_UTR 55.0%
ATTCTCGCTCCTCTGAACGC+CGG + chr5_2:14109969-14109988 None:intergenic 55.0%
!! GGCCGTTTTCTCTTCAACGC+TGG - chr5_2:14110112-14110131 Msa0758750:CDS 55.0%
GTCACAGGCGAATCTAGTGC+AGG + chr5_2:14110574-14110593 None:intergenic 55.0%
TGCGATTCCGGCGAACGTGA+AGG - chr5_2:14110024-14110043 Msa0758750:CDS 60.0%
TGCGATTCCGGCGAACGTGA+AGG - chr5_2:14110024-14110043 Msa0758750:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 14109551 14110982 14109551 ID=Msa0758750;Name=Msa0758750
chr5_2 mRNA 14109551 14110982 14109551 ID=Msa0758750-mRNA-1;Parent=Msa0758750;Name=Msa0758750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|1|1|3|361|203
chr5_2 exon 14109551 14110134 14109551 ID=Msa0758750-mRNA-1:exon:6386;Parent=Msa0758750-mRNA-1
chr5_2 exon 14110399 14110663 14110399 ID=Msa0758750-mRNA-1:exon:6385;Parent=Msa0758750-mRNA-1
chr5_2 exon 14110753 14110982 14110753 ID=Msa0758750-mRNA-1:exon:6384;Parent=Msa0758750-mRNA-1
chr5_2 five_prime_UTR 14110877 14110982 14110877 ID=Msa0758750-mRNA-1:five_prime_utr;Parent=Msa0758750-mRNA-1
chr5_2 CDS 14110753 14110876 14110753 ID=Msa0758750-mRNA-1:cds;Parent=Msa0758750-mRNA-1
chr5_2 CDS 14110399 14110663 14110399 ID=Msa0758750-mRNA-1:cds;Parent=Msa0758750-mRNA-1
chr5_2 CDS 14109912 14110134 14109912 ID=Msa0758750-mRNA-1:cds;Parent=Msa0758750-mRNA-1
chr5_2 three_prime_UTR 14109551 14109911 14109551 ID=Msa0758750-mRNA-1:three_prime_utr;Parent=Msa0758750-mRNA-1
Gene Sequence

>Msa0758750

ATGAGCACCACCATAACTGAGCTTGAACAAGAAGAACTGCTTGAGAAATTGGAAGTCTTCAAAATCAAAGGCAAAGATAAGCATGGCCGCAAGATTCTCCGCATTATCGGAAAATTCTTCCCTGCGCGATTGGTTAGCGTTGAGGTTCTGAAGAAGTTTTTGGAGGAGAGGATTTTCCCGAAGCTAGGGAAGAAGAAATTCGCGGTGTTGTATATTCACACCGGCGTTCAGAGGAGCGAGAATTTTGCCGGAATTTCTTCTCTCCGATCGGTTTACGATGCGATTCCGGCGAACGTGAAGGAGAATCTAGAAGCTGTTTATTTTATTCATCCTGGTTTACAAGCTCGCCTTTTTCTCGCTACGTTTGGCCGTTTTCTCTTCAACGCTGGGTTGTACAGGAAGCTGAGGTACATCAGCAGAGTTGGTTATCTATGGGAGAATGTTAGGAGGAACGAAGTGGAGATTCCGGAGTTCGTATACGATCATGATGAAGATTTGGAGTATCGTCCAATGATGGATTATGGATTAGAGAGTGATCATGCTAGGGTTTATGGTACTGCTCCTGCACTAGATTCGCCTGTGACTACTTACTCCATGAGGTGTATCTCATAG
Protein sequence

>Msa0758750

MSTTITELEQEELLEKLEVFKIKGKDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQRSENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFLFNAGLYRKLRYISRVGYLWENVRRNEVEIPEFVYDHDEDLEYRPMMDYGLESDHARVYGTAPALDSPVTTYSMRCIS*