Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760700 | XP_003612634.1 | 96.763 | 278 | 9 | 0 | 1 | 278 | 1 | 278 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760700 | sp|Q6NS09|TM45B_XENLA | 29.126 | 206 | 138 | 4 | 1 | 204 | 1 | 200 | 1.02e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760700 | G7K852 | 96.763 | 278 | 9 | 0 | 1 | 278 | 1 | 278 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613110 | Msa0760700 | 0.810476 | 1.131257e-50 | -8.615850e-47 |
| Msa0760700 | Msa0802240 | 0.912725 | 1.401888e-83 | -8.615850e-47 |
| Msa0760700 | Msa1062040 | 0.811411 | 7.097169e-51 | -8.615850e-47 |
| Msa0760700 | Msa1150780 | 0.813107 | 3.025584e-51 | -8.615850e-47 |
| Msa0760700 | Msa1407760 | 0.803654 | 3.144961e-49 | -8.615850e-47 |
| Msa0445330 | Msa0760700 | 0.803993 | 2.673786e-49 | -8.615850e-47 |
| Msa0592330 | Msa0760700 | 0.814154 | 1.780308e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760700 | MtrunA17_Chr5g0409571 | 96.763 | 278 | 9 | 0 | 1 | 278 | 1 | 278 | 0.0 | 556 |
| Msa0760700 | MtrunA17_Chr8g0369411 | 72.348 | 264 | 73 | 0 | 1 | 264 | 1 | 264 | 2.23e-146 | 411 |
| Msa0760700 | MtrunA17_Chr8g0369401 | 65.060 | 166 | 58 | 0 | 99 | 264 | 1 | 166 | 5.23e-74 | 224 |
| Msa0760700 | MtrunA17_Chr4g0033971 | 31.008 | 258 | 159 | 5 | 1 | 247 | 1 | 250 | 1.98e-32 | 120 |
| Msa0760700 | MtrunA17_Chr2g0287431 | 26.740 | 273 | 188 | 5 | 1 | 266 | 1 | 268 | 1.13e-31 | 119 |
| Msa0760700 | MtrunA17_Chr1g0210731 | 27.682 | 289 | 188 | 9 | 5 | 276 | 2 | 286 | 2.63e-29 | 112 |
| Msa0760700 | MtrunA17_Chr1g0210721 | 26.117 | 291 | 193 | 7 | 1 | 278 | 1 | 282 | 6.40e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0760700 | AT1G32127.2 | 73.864 | 264 | 69 | 0 | 1 | 264 | 1 | 264 | 8.98e-146 | 409 |
| Msa0760700 | AT1G32127.1 | 73.864 | 264 | 69 | 0 | 1 | 264 | 1 | 264 | 8.98e-146 | 409 |
| Msa0760700 | AT1G55240.1 | 31.615 | 291 | 182 | 7 | 1 | 278 | 1 | 287 | 3.46e-44 | 152 |
| Msa0760700 | AT1G55230.1 | 28.763 | 299 | 184 | 8 | 1 | 274 | 1 | 295 | 2.14e-39 | 139 |
| Msa0760700 | AT5G19870.1 | 29.044 | 272 | 178 | 8 | 1 | 263 | 1 | 266 | 2.48e-33 | 123 |
| Msa0760700 | AT1G49470.1 | 31.835 | 267 | 156 | 7 | 1 | 251 | 1 | 257 | 2.26e-31 | 118 |
Find 75 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTAGGGTATGCTATTT+TGG | 0.185525 | 5_2:-17298665 | Msa0760700:three_prime_UTR |
| TAGTTGGGGTGTGGCATATT+TGG | 0.191911 | 5_2:-17301094 | Msa0760700:CDS |
| CTTCTTATGTTCTTTATCTA+TGG | 0.197883 | 5_2:-17300846 | Msa0760700:CDS |
| TCCTAAGACGTTTCGTGTTC+GGG | 0.241693 | 5_2:-17301045 | Msa0760700:CDS |
| TAATGATTTGCATTCAATTC+AGG | 0.249628 | 5_2:-17298705 | Msa0760700:CDS |
| ATAAAATGCATAGTCCTATT+TGG | 0.267816 | 5_2:+17299020 | None:intergenic |
| TTCATATAGAAGATATCTTT+TGG | 0.275459 | 5_2:-17301253 | Msa0760700:five_prime_UTR |
| ATCCTAAGACGTTTCGTGTT+CGG | 0.282054 | 5_2:-17301046 | Msa0760700:CDS |
| GTCTGTATATTGGAGTTAAA+AGG | 0.284481 | 5_2:-17298572 | Msa0760700:three_prime_UTR |
| TATAGAACATGTCTGTATAT+TGG | 0.287889 | 5_2:-17298582 | Msa0760700:three_prime_UTR |
| ACCAGATGGTTGCAAGATTA+AGG | 0.289473 | 5_2:-17298876 | Msa0760700:CDS |
| AGTTGGGGTGTGGCATATTT+GGG | 0.310805 | 5_2:-17301093 | Msa0760700:CDS |
| TTGCAACCATCTGGTATCAT+AGG | 0.312702 | 5_2:+17298884 | None:intergenic |
| TTTCAAGGGTCATGCTTTGC+CGG | 0.328389 | 5_2:-17301132 | Msa0760700:CDS |
| ACCCTCCTCGTCTTCCAAAT+AGG | 0.366655 | 5_2:-17299034 | Msa0760700:CDS |
| AAATCGGCTGGAAAGTTGTT+TGG | 0.368226 | 5_2:+17298974 | None:intergenic |
| GCTCTTTGTTGCCATCCTTT+CGG | 0.373014 | 5_2:-17298789 | Msa0760700:CDS |
| GAGCTCTATGTTGTTGCAAT+TGG | 0.374652 | 5_2:-17300978 | Msa0760700:CDS |
| CTTTAGCGCTGCAAGGCATA+TGG | 0.378119 | 5_2:-17298937 | Msa0760700:CDS |
| TGATGGGAGGCTAAAGTACT+TGG | 0.381774 | 5_2:-17301000 | Msa0760700:CDS |
| TCCTTAATCTTGCAACCATC+TGG | 0.387259 | 5_2:+17298875 | None:intergenic |
| AGCGATGCCGTTGCATAAAT+CGG | 0.390715 | 5_2:+17298958 | None:intergenic |
| GCCCGAACACGAAACGTCTT+AGG | 0.393772 | 5_2:+17301044 | None:intergenic |
| GCAAGTGGTGTAGAAGGAAT+AGG | 0.399248 | 5_2:-17298508 | Msa0760700:three_prime_UTR |
| GCCATCCTTTCGGTTCTTGT+TGG | 0.409177 | 5_2:-17298779 | Msa0760700:CDS |
| TTTCATTCAACATCACATAA+AGG | 0.423117 | 5_2:-17299076 | Msa0760700:CDS |
| TTCAAGGGTCATGCTTTGCC+GGG | 0.438314 | 5_2:-17301131 | Msa0760700:CDS |
| TTACTTACAATAGTAGTGAT+TGG | 0.439089 | 5_2:+17302025 | None:intergenic |
| CTGGAAAGTTGTTTGGAAGA+AGG | 0.447000 | 5_2:+17298981 | None:intergenic |
| AGACGTTTCGTGTTCGGGCG+TGG | 0.450045 | 5_2:-17301040 | Msa0760700:CDS |
| GATTAGATCAAAACTGAAGT+AGG | 0.452967 | 5_2:-17298679 | Msa0760700:exon |
| TACAGCTAAGAAATCATTCA+AGG | 0.464409 | 5_2:-17301211 | Msa0760700:five_prime_UTR |
| ACTCACCTCAAGATAATTGT+TGG | 0.467738 | 5_2:-17300918 | Msa0760700:CDS |
| TGGAAAGTTGTTTGGAAGAA+GGG | 0.490039 | 5_2:+17298982 | None:intergenic |
| TCGGGCGTGGAATCCTGTAC+CGG | 0.495794 | 5_2:-17301027 | Msa0760700:CDS |
| ATGAATGACTTTGAGCACTC+AGG | 0.502386 | 5_2:-17300873 | Msa0760700:CDS |
| CAGAAAATGCCATGGCAGCT+AGG | 0.508305 | 5_2:+17299119 | None:intergenic |
| TTGATTTAAGCACAAGGGAG+TGG | 0.511956 | 5_2:-17301182 | Msa0760700:five_prime_UTR |
| ATGCCGTTGCATAAATCGGC+TGG | 0.516097 | 5_2:+17298962 | None:intergenic |
| AGGAAACTTATTCTTTAATG+TGG | 0.516649 | 5_2:-17298488 | Msa0760700:three_prime_UTR |
| CTCCCATCAAAACCCGGTAC+AGG | 0.520728 | 5_2:+17301014 | None:intergenic |
| TTAGTTACACTTGAGTATGT+TGG | 0.525182 | 5_2:-17298617 | Msa0760700:three_prime_UTR |
| CATAAAATACCTTGTTGCAA+TGG | 0.527231 | 5_2:+17299145 | None:intergenic |
| TTTATGTTTCCTAGCTGCCA+TGG | 0.533188 | 5_2:-17299128 | Msa0760700:CDS |
| TGAATGACTTTGAGCACTCA+GGG | 0.540036 | 5_2:-17300872 | Msa0760700:CDS |
| CGGGCGTGGAATCCTGTACC+GGG | 0.545371 | 5_2:-17301026 | Msa0760700:CDS |
| GTTGTTTGGAAGAAGGGCTC+CGG | 0.548724 | 5_2:+17298988 | None:intergenic |
| TTTGGAAGACGAGGAGGGTG+TGG | 0.553435 | 5_2:+17299038 | None:intergenic |
| TGCAACCATCTGGTATCATA+GGG | 0.554097 | 5_2:+17298885 | None:intergenic |
| TCAGTTGACAGTGAGATTCG+CGG | 0.561893 | 5_2:-17298833 | Msa0760700:CDS |
| TTTCCAGCCGATTTATGCAA+CGG | 0.568372 | 5_2:-17298965 | Msa0760700:CDS |
| GATTTGCATTCAATTCAGGA+TGG | 0.570638 | 5_2:-17298701 | Msa0760700:CDS |
| TTTATGTGATGTTGAATGAA+AGG | 0.575760 | 5_2:+17299078 | None:intergenic |
| ATTAGATCAAAACTGAAGTA+GGG | 0.575919 | 5_2:-17298678 | Msa0760700:exon |
| TCAAAGTCATTCATATGAGA+AGG | 0.583114 | 5_2:+17300882 | None:intergenic |
| ACCAACAAGAACCGAAAGGA+TGG | 0.586194 | 5_2:+17298778 | None:intergenic |
| CACCTCAAGATAATTGTTGG+TGG | 0.591598 | 5_2:-17300915 | Msa0760700:CDS |
| TATGGCCCTATGATACCAGA+TGG | 0.593823 | 5_2:-17298890 | Msa0760700:CDS |
| AACATCACATAAAGGTCTCG+AGG | 0.601372 | 5_2:-17299068 | Msa0760700:CDS |
| GGCATCGCTTTAGCGCTGCA+AGG | 0.601674 | 5_2:-17298944 | Msa0760700:CDS |
| AAAGGAGAATAGAAGATACT+CGG | 0.605972 | 5_2:+17299096 | None:intergenic |
| CAAGTTTGATTTAAGCACAA+GGG | 0.612555 | 5_2:-17301187 | Msa0760700:five_prime_UTR |
| ATATCAATGAATGATTGTGA+AGG | 0.613836 | 5_2:+17302087 | None:intergenic |
| TCAAGGGTCATGCTTTGCCG+GGG | 0.619566 | 5_2:-17301130 | Msa0760700:CDS |
| GTCCTATTTGGAAGACGAGG+AGG | 0.619764 | 5_2:+17299032 | None:intergenic |
| CACCACCAACAATTATCTTG+AGG | 0.625766 | 5_2:+17300913 | None:intergenic |
| TCCTATTTGGAAGACGAGGA+GGG | 0.627926 | 5_2:+17299033 | None:intergenic |
| AGATTTCTTCCATTGCAACA+AGG | 0.635937 | 5_2:-17299154 | Msa0760700:CDS |
| ACAGCTAAGAAATCATTCAA+GGG | 0.636237 | 5_2:-17301210 | Msa0760700:five_prime_UTR |
| ACATCACATAAAGGTCTCGA+GGG | 0.649189 | 5_2:-17299067 | Msa0760700:CDS |
| GCAAGTTTGATTTAAGCACA+AGG | 0.653274 | 5_2:-17301188 | Msa0760700:five_prime_UTR |
| TTTAGCCTCCCATCAAAACC+CGG | 0.654952 | 5_2:+17301008 | None:intergenic |
| ATACTCGGCAGAAAATGCCA+TGG | 0.688433 | 5_2:+17299111 | None:intergenic |
| CAGTACCAACAAGAACCGAA+AGG | 0.694080 | 5_2:+17298774 | None:intergenic |
| ATAGTCCTATTTGGAAGACG+AGG | 0.716043 | 5_2:+17299029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGTTAAGATTTTTATA+AGG | + | chr5_2:17298756-17298775 | None:intergenic | 10.0% |
| !!! | AACTTTTAGATATGAATAAT+GGG | + | chr5_2:17298712-17298731 | None:intergenic | 15.0% |
| !! | TTTGATGTTTGAAAATTAAT+TGG | - | chr5_2:17299360-17299379 | Msa0760700:intron | 15.0% |
| !! | TAAATATTAGTCAGAAAAAA+TGG | - | chr5_2:17299483-17299502 | Msa0760700:intron | 15.0% |
| !! | AAATATTAGTCAGAAAAAAT+GGG | - | chr5_2:17299484-17299503 | Msa0760700:intron | 15.0% |
| !! | CTAATTTATTCTATTTAAAC+AGG | + | chr5_2:17299923-17299942 | None:intergenic | 15.0% |
| !! | CTGTTTAAATAGAATAAATT+AGG | - | chr5_2:17299921-17299940 | Msa0760700:intron | 15.0% |
| !! | TTGTCTTATGATTATAAAAA+GGG | + | chr5_2:17300418-17300437 | None:intergenic | 15.0% |
| !! | TTTGTCTTATGATTATAAAA+AGG | + | chr5_2:17300419-17300438 | None:intergenic | 15.0% |
| !!! | TTTTCTCTTATTTGGTTTAA+TGG | + | chr5_2:17298499-17298518 | None:intergenic | 20.0% |
| !! | TGAAAATGAAAATGAAAAGA+GGG | + | chr5_2:17298643-17298662 | None:intergenic | 20.0% |
| !! | ATGAAAATGAAAATGAAAAG+AGG | + | chr5_2:17298644-17298663 | None:intergenic | 20.0% |
| !!! | GAACTTTTAGATATGAATAA+TGG | + | chr5_2:17298713-17298732 | None:intergenic | 20.0% |
| !!! | AAAATTTTCATACTTCTCAA+TGG | - | chr5_2:17298867-17298886 | Msa0760700:CDS | 20.0% |
| !! | AAACAAAAAAGTCAAAACTT+GGG | + | chr5_2:17298935-17298954 | None:intergenic | 20.0% |
| !! | AAAACAAAAAAGTCAAAACT+TGG | + | chr5_2:17298936-17298955 | None:intergenic | 20.0% |
| !!! | GTTTTGACTTTTTTGTTTTT+TGG | - | chr5_2:17298937-17298956 | Msa0760700:CDS | 20.0% |
| !! | TTTCTTCATTGTATAGATAT+TGG | - | chr5_2:17298964-17298983 | Msa0760700:CDS | 20.0% |
| !!! | TTTTTATATTTCTTCTCCTT+TGG | - | chr5_2:17299033-17299052 | Msa0760700:CDS | 20.0% |
| !!! | CTAATTTTTTCATTTTCCAA+AGG | + | chr5_2:17299052-17299071 | None:intergenic | 20.0% |
| !! | AAGTGATTAATTAGTTGATT+AGG | - | chr5_2:17299101-17299120 | Msa0760700:CDS | 20.0% |
| !!! | TTGTTTCTTGAAAAAATTCA+AGG | - | chr5_2:17299153-17299172 | Msa0760700:CDS | 20.0% |
| !! | TAGAAATATTCTGTCAAAAA+AGG | - | chr5_2:17299331-17299350 | Msa0760700:intron | 20.0% |
| !! | GTTTGAAAATTAATTGGTAT+AGG | - | chr5_2:17299366-17299385 | Msa0760700:intron | 20.0% |
| !!! | TTCATATAGAAGATATCTTT+TGG | - | chr5_2:17299389-17299408 | Msa0760700:intron | 20.0% |
| !!! | TCTTTTTTTTTTCTTTCTTC+CGG | - | chr5_2:17300257-17300276 | Msa0760700:intron | 20.0% |
| !!! | TAAAAAAACATTTTTTGCAG+CGG | + | chr5_2:17300878-17300897 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAGTTAATGCAA+GGG | + | chr5_2:17301382-17301401 | None:intergenic | 20.0% |
| !! | AATCTATGCAAGAAAAAAAA+CGG | + | chr5_2:17301473-17301492 | None:intergenic | 20.0% |
| !! | CTGAAAGTTTTTCTCTTATT+TGG | + | chr5_2:17298507-17298526 | None:intergenic | 25.0% |
| ! | CAAATAAGAGAAAAACTTTC+AGG | - | chr5_2:17298505-17298524 | Msa0760700:three_prime_UTR | 25.0% |
| !!! | AAGGTTTTTTTTGTGTTTGT+GGG | + | chr5_2:17298539-17298558 | None:intergenic | 25.0% |
| ! | ATATCAATGAATGATTGTGA+AGG | + | chr5_2:17298558-17298577 | None:intergenic | 25.0% |
| ! | TTACTTACAATAGTAGTGAT+TGG | + | chr5_2:17298620-17298639 | None:intergenic | 25.0% |
| ! | ATTCACTTATTACTACTAGA+TGG | - | chr5_2:17298817-17298836 | Msa0760700:CDS | 25.0% |
| ! | AACAAAAAAGTCAAAACTTG+GGG | + | chr5_2:17298934-17298953 | None:intergenic | 25.0% |
| ! | AAATTCAAGGACACTATTAT+TGG | - | chr5_2:17299166-17299185 | Msa0760700:intron | 25.0% |
| ! | ACTTTCTGATAAAACTCAAA+TGG | + | chr5_2:17299220-17299239 | None:intergenic | 25.0% |
| !! | TCCTTGAAATTTGAAGTTTA+TGG | - | chr5_2:17299302-17299321 | Msa0760700:intron | 25.0% |
| ! | ACCATAAACTTCAAATTTCA+AGG | + | chr5_2:17299306-17299325 | None:intergenic | 25.0% |
| ! | CTTCTTATGTTCTTTATCTA+TGG | - | chr5_2:17299796-17299815 | Msa0760700:intron | 25.0% |
| ! | TCTATGATTAATCATGAGAA+AGG | + | chr5_2:17299983-17300002 | None:intergenic | 25.0% |
| ! | TCTCATGATTAATCATAGAT+AGG | - | chr5_2:17299984-17300003 | Msa0760700:intron | 25.0% |
| !!! | AATAATGACTTGTTCTAGAT+AGG | - | chr5_2:17300162-17300181 | Msa0760700:intron | 25.0% |
| !!! | ATAATGACTTGTTCTAGATA+GGG | - | chr5_2:17300163-17300182 | Msa0760700:intron | 25.0% |
| !! | TAATGTATTGATGTTCTAGA+TGG | + | chr5_2:17300374-17300393 | None:intergenic | 25.0% |
| ! | AAAAGGGAGTGAAAAAAATT+AGG | + | chr5_2:17300402-17300421 | None:intergenic | 25.0% |
| !! | TAGTTACTTTCAAGTGAAAT+TGG | - | chr5_2:17300614-17300633 | Msa0760700:intron | 25.0% |
| ! | GAGAAATAAACTGAATAAGA+AGG | - | chr5_2:17301129-17301148 | Msa0760700:CDS | 25.0% |
| !! | GTTCTTTAAAAGTTAATGCA+AGG | + | chr5_2:17301383-17301402 | None:intergenic | 25.0% |
| ! | TTTATGTGATGTTGAATGAA+AGG | + | chr5_2:17301567-17301586 | None:intergenic | 25.0% |
| ! | TTTCATTCAACATCACATAA+AGG | - | chr5_2:17301566-17301585 | Msa0760700:intron | 25.0% |
| ! | ATAAAATGCATAGTCCTATT+TGG | + | chr5_2:17301625-17301644 | None:intergenic | 25.0% |
| !! | TAATGATTTGCATTCAATTC+AGG | - | chr5_2:17301937-17301956 | Msa0760700:intron | 25.0% |
| ! | ATTAGATCAAAACTGAAGTA+GGG | - | chr5_2:17301964-17301983 | Msa0760700:intron | 25.0% |
| ! | TATAGAACATGTCTGTATAT+TGG | - | chr5_2:17302060-17302079 | Msa0760700:five_prime_UTR | 25.0% |
| ! | AGGAAACTTATTCTTTAATG+TGG | - | chr5_2:17302154-17302173 | Msa0760700:five_prime_UTR | 25.0% |
| !!! | GAAGGTTTTTTTTGTGTTTG+TGG | + | chr5_2:17298540-17298559 | None:intergenic | 30.0% |
| !! | ACTAGATGGATTAAACTTGT+TGG | - | chr5_2:17298831-17298850 | Msa0760700:CDS | 30.0% |
| !! | CTAGATGGATTAAACTTGTT+GGG | - | chr5_2:17298832-17298851 | Msa0760700:CDS | 30.0% |
| AGAGGAAAATTATAGAAGCA+TGG | + | chr5_2:17298897-17298916 | None:intergenic | 30.0% | |
| !! | GATATTGGACTTTTTCTTCA+TGG | - | chr5_2:17298979-17298998 | Msa0760700:CDS | 30.0% |
| ! | AAAATTAGTTGACTGACTCT+AGG | - | chr5_2:17299064-17299083 | Msa0760700:CDS | 30.0% |
| TACAGCTAAGAAATCATTCA+AGG | - | chr5_2:17299431-17299450 | Msa0760700:intron | 30.0% | |
| ACAGCTAAGAAATCATTCAA+GGG | - | chr5_2:17299432-17299451 | Msa0760700:intron | 30.0% | |
| ! | CAAGTTTGATTTAAGCACAA+GGG | - | chr5_2:17299455-17299474 | Msa0760700:intron | 30.0% |
| AGAAAAAATGGGATCTTTCA+AGG | - | chr5_2:17299495-17299514 | Msa0760700:intron | 30.0% | |
| GAAAAAATGGGATCTTTCAA+GGG | - | chr5_2:17299496-17299515 | Msa0760700:intron | 30.0% | |
| TCAAAGTCATTCATATGAGA+AGG | + | chr5_2:17299763-17299782 | None:intergenic | 30.0% | |
| AACACATCTTACTTGAGTAT+TGG | + | chr5_2:17300014-17300033 | None:intergenic | 30.0% | |
| !! | TTGCATAGTTCTGAATTTCA+GGG | - | chr5_2:17300224-17300243 | Msa0760700:intron | 30.0% |
| TAATTCAGTTGCATAGTTTC+CGG | + | chr5_2:17300279-17300298 | None:intergenic | 30.0% | |
| AACTATGCAACTGAATTATG+TGG | - | chr5_2:17300281-17300300 | Msa0760700:intron | 30.0% | |
| ! | GTACTAGCAAAATAACTTGT+AGG | + | chr5_2:17300456-17300475 | None:intergenic | 30.0% |
| ! | GTTTAATTTCCACAGTACAT+CGG | + | chr5_2:17300510-17300529 | None:intergenic | 30.0% |
| ! | ATGTTAAAACGAAGCTTTAG+TGG | - | chr5_2:17300552-17300571 | Msa0760700:intron | 30.0% |
| !! | AGTTTTGCTACATGATTTGT+GGG | + | chr5_2:17300751-17300770 | None:intergenic | 30.0% |
| TCAAGAACTAACATATCTAG+CGG | + | chr5_2:17300953-17300972 | None:intergenic | 30.0% | |
| ATAATACAGTAGACGATACA+AGG | + | chr5_2:17300980-17300999 | None:intergenic | 30.0% | |
| ! | TAGCTTTTTGTGACTGTAAA+TGG | - | chr5_2:17301026-17301045 | Msa0760700:CDS | 30.0% |
| TGTAAATGGTGTATTCTTTG+CGG | - | chr5_2:17301040-17301059 | Msa0760700:CDS | 30.0% | |
| ATAAACTGAATAAGAAGGCA+AGG | - | chr5_2:17301134-17301153 | Msa0760700:CDS | 30.0% | |
| CTTCAAATTTATGCATTGCA+AGG | - | chr5_2:17301259-17301278 | Msa0760700:intron | 30.0% | |
| CATAAAATACCTTGTTGCAA+TGG | + | chr5_2:17301500-17301519 | None:intergenic | 30.0% | |
| AAAGGAGAATAGAAGATACT+CGG | + | chr5_2:17301549-17301568 | None:intergenic | 30.0% | |
| ! | TGCATTTTATCTTCAATTGC+CGG | - | chr5_2:17301635-17301654 | Msa0760700:intron | 30.0% |
| !! | CAAACTGCTTTTGTTCTTTA+TGG | - | chr5_2:17301734-17301753 | Msa0760700:intron | 30.0% |
| GATTAGATCAAAACTGAAGT+AGG | - | chr5_2:17301963-17301982 | Msa0760700:intron | 30.0% | |
| TTAGTTACACTTGAGTATGT+TGG | - | chr5_2:17302025-17302044 | Msa0760700:intron | 30.0% | |
| GTCTGTATATTGGAGTTAAA+AGG | - | chr5_2:17302070-17302089 | Msa0760700:five_prime_UTR | 30.0% | |
| TTGAGAAAGATTGTGTGTGA+AGG | + | chr5_2:17298781-17298800 | None:intergenic | 35.0% | |
| ! | GCAAGTTTGATTTAAGCACA+AGG | - | chr5_2:17299454-17299473 | Msa0760700:intron | 35.0% |
| !!! | GGACGTTGTTTTTTGTAGTT+GGG | - | chr5_2:17299533-17299552 | Msa0760700:intron | 35.0% |
| !!! | GACGTTGTTTTTTGTAGTTG+GGG | - | chr5_2:17299534-17299553 | Msa0760700:intron | 35.0% |
| ACTCACCTCAAGATAATTGT+TGG | - | chr5_2:17299724-17299743 | Msa0760700:intron | 35.0% | |
| ! | CAAGTAAGATGTGTTCTAGA+CGG | - | chr5_2:17300019-17300038 | Msa0760700:intron | 35.0% |
| !! | GTTGCATAGTTCTGAATTTC+AGG | - | chr5_2:17300223-17300242 | Msa0760700:intron | 35.0% |
| ! | TGTATTGATGTTCTAGATGG+AGG | + | chr5_2:17300371-17300390 | None:intergenic | 35.0% |
| ! | GAGTTTTGCTACATGATTTG+TGG | + | chr5_2:17300752-17300771 | None:intergenic | 35.0% |
| !! | GGCTCTAAAAGTTAACATTG+TGG | - | chr5_2:17300798-17300817 | Msa0760700:intron | 35.0% |
| CTTCAAATTTATGCATTGCG+AGG | - | chr5_2:17301299-17301318 | Msa0760700:intron | 35.0% | |
| GTGTGTTTAGTTAAAGATGC+AGG | + | chr5_2:17301346-17301365 | None:intergenic | 35.0% | |
| AAAAAAAACGGAGAGGAGTA+TGG | + | chr5_2:17301461-17301480 | None:intergenic | 35.0% | |
| ATGCAAGAAAAAAAACGGAG+AGG | + | chr5_2:17301468-17301487 | None:intergenic | 35.0% | |
| AGATTTCTTCCATTGCAACA+AGG | - | chr5_2:17301488-17301507 | Msa0760700:intron | 35.0% | |
| TGGAAAGTTGTTTGGAAGAA+GGG | + | chr5_2:17301663-17301682 | None:intergenic | 35.0% | |
| GATTTGCATTCAATTCAGGA+TGG | - | chr5_2:17301941-17301960 | Msa0760700:intron | 35.0% | |
| !! | TGAAGTAGGGTATGCTATTT+TGG | - | chr5_2:17301977-17301996 | Msa0760700:intron | 35.0% |
| GGGGAAAAATCAATGTGAAG+AGG | + | chr5_2:17298915-17298934 | None:intergenic | 40.0% | |
| TTGATTTAAGCACAAGGGAG+TGG | - | chr5_2:17299460-17299479 | Msa0760700:intron | 40.0% | |
| ACTACAAAAAACAACGTCCC+CGG | + | chr5_2:17299532-17299551 | None:intergenic | 40.0% | |
| !!! | GGGACGTTGTTTTTTGTAGT+TGG | - | chr5_2:17299532-17299551 | Msa0760700:intron | 40.0% |
| !!! | TGTTTTTTGTAGTTGGGGTG+TGG | - | chr5_2:17299539-17299558 | Msa0760700:intron | 40.0% |
| ATCCTAAGACGTTTCGTGTT+CGG | - | chr5_2:17299596-17299615 | Msa0760700:intron | 40.0% | |
| GAGCTCTATGTTGTTGCAAT+TGG | - | chr5_2:17299664-17299683 | Msa0760700:intron | 40.0% | |
| CACCTCAAGATAATTGTTGG+TGG | - | chr5_2:17299727-17299746 | Msa0760700:intron | 40.0% | |
| CACCACCAACAATTATCTTG+AGG | + | chr5_2:17299732-17299751 | None:intergenic | 40.0% | |
| ATGAATGACTTTGAGCACTC+AGG | - | chr5_2:17299769-17299788 | Msa0760700:intron | 40.0% | |
| TGAATGACTTTGAGCACTCA+GGG | - | chr5_2:17299770-17299789 | Msa0760700:intron | 40.0% | |
| CTCTACTTAGCGAAAAAACC+AGG | - | chr5_2:17299827-17299846 | Msa0760700:intron | 40.0% | |
| GAGCAATAGATGAACTAACC+TGG | + | chr5_2:17299848-17299867 | None:intergenic | 40.0% | |
| !! | TTCTAGACGGTGTTGTCAAT+TGG | - | chr5_2:17300032-17300051 | Msa0760700:intron | 40.0% |
| !! | TCTAGACGGTGTTGTCAATT+GGG | - | chr5_2:17300033-17300052 | Msa0760700:intron | 40.0% |
| !! | TACAGAGTGTTGCCAAATAG+TGG | + | chr5_2:17300121-17300140 | None:intergenic | 40.0% |
| CTCCAATAAGTCCATGTTGT+AGG | - | chr5_2:17300769-17300788 | Msa0760700:intron | 40.0% | |
| TGCCTACAACATGGACTTAT+TGG | + | chr5_2:17300774-17300793 | None:intergenic | 40.0% | |
| TTTATGTTTCCTAGCTGCCA+TGG | - | chr5_2:17301514-17301533 | Msa0760700:intron | 40.0% | |
| AACATCACATAAAGGTCTCG+AGG | - | chr5_2:17301574-17301593 | Msa0760700:intron | 40.0% | |
| ACATCACATAAAGGTCTCGA+GGG | - | chr5_2:17301575-17301594 | Msa0760700:intron | 40.0% | |
| ATAGTCCTATTTGGAAGACG+AGG | + | chr5_2:17301616-17301635 | None:intergenic | 40.0% | |
| CTGGAAAGTTGTTTGGAAGA+AGG | + | chr5_2:17301664-17301683 | None:intergenic | 40.0% | |
| AAATCGGCTGGAAAGTTGTT+TGG | + | chr5_2:17301671-17301690 | None:intergenic | 40.0% | |
| ! | TTTCCAGCCGATTTATGCAA+CGG | - | chr5_2:17301677-17301696 | Msa0760700:intron | 40.0% |
| TGCAACCATCTGGTATCATA+GGG | + | chr5_2:17301760-17301779 | None:intergenic | 40.0% | |
| TTGCAACCATCTGGTATCAT+AGG | + | chr5_2:17301761-17301780 | None:intergenic | 40.0% | |
| ACCAGATGGTTGCAAGATTA+AGG | - | chr5_2:17301766-17301785 | Msa0760700:intron | 40.0% | |
| TCCTTAATCTTGCAACCATC+TGG | + | chr5_2:17301770-17301789 | None:intergenic | 40.0% | |
| ! | CTTTTAGCAAGTGGTGTAGA+AGG | - | chr5_2:17302128-17302147 | Msa0760700:five_prime_UTR | 40.0% |
| TTTCAAGGGTCATGCTTTGC+CGG | - | chr5_2:17299510-17299529 | Msa0760700:intron | 45.0% | |
| TAGTTGGGGTGTGGCATATT+TGG | - | chr5_2:17299548-17299567 | Msa0760700:intron | 45.0% | |
| AGTTGGGGTGTGGCATATTT+GGG | - | chr5_2:17299549-17299568 | Msa0760700:intron | 45.0% | |
| TCCTAAGACGTTTCGTGTTC+GGG | - | chr5_2:17299597-17299616 | Msa0760700:intron | 45.0% | |
| !! | AATCCTGTACCGGGTTTTGA+TGG | - | chr5_2:17299625-17299644 | Msa0760700:intron | 45.0% |
| !! | ATCCTGTACCGGGTTTTGAT+GGG | - | chr5_2:17299626-17299645 | Msa0760700:intron | 45.0% |
| TTTAGCCTCCCATCAAAACC+CGG | + | chr5_2:17299637-17299656 | None:intergenic | 45.0% | |
| ! | TGATGGGAGGCTAAAGTACT+TGG | - | chr5_2:17299642-17299661 | Msa0760700:intron | 45.0% |
| !! | CTAGACGGTGTTGTCAATTG+GGG | - | chr5_2:17300034-17300053 | Msa0760700:intron | 45.0% |
| GCACAGCGGAATATGAACAA+CGG | + | chr5_2:17300074-17300093 | None:intergenic | 45.0% | |
| GCATCAGTGTAGCCACTATT+TGG | - | chr5_2:17300106-17300125 | Msa0760700:intron | 45.0% | |
| TGCAACTGAATTGCGTGTCA+AGG | + | chr5_2:17300209-17300228 | None:intergenic | 45.0% | |
| TGGTTGACAATACTCTGACG+TGG | - | chr5_2:17300301-17300320 | Msa0760700:intron | 45.0% | |
| GGTTGACAATACTCTGACGT+GGG | - | chr5_2:17300302-17300321 | Msa0760700:intron | 45.0% | |
| TATGGATGGACCTCAGGTTT+AGG | - | chr5_2:17300338-17300357 | Msa0760700:intron | 45.0% | |
| TCGGATGAAATGGATGCGAA+GGG | + | chr5_2:17300491-17300510 | None:intergenic | 45.0% | |
| ATCGGATGAAATGGATGCGA+AGG | + | chr5_2:17300492-17300511 | None:intergenic | 45.0% | |
| CCACAGTACATCGGATGAAA+TGG | + | chr5_2:17300501-17300520 | None:intergenic | 45.0% | |
| CCATTTCATCCGATGTACTG+TGG | - | chr5_2:17300498-17300517 | Msa0760700:intron | 45.0% | |
| AGTCCATGTTGTAGGCAGTT+TGG | - | chr5_2:17300777-17300796 | Msa0760700:intron | 45.0% | |
| TGCAGCGGCAACAACAAATA+CGG | + | chr5_2:17300863-17300882 | None:intergenic | 45.0% | |
| ATACTCGGCAGAAAATGCCA+TGG | + | chr5_2:17301534-17301553 | None:intergenic | 45.0% | |
| TCCTATTTGGAAGACGAGGA+GGG | + | chr5_2:17301612-17301631 | None:intergenic | 45.0% | |
| AGCGATGCCGTTGCATAAAT+CGG | + | chr5_2:17301687-17301706 | None:intergenic | 45.0% | |
| TATGGCCCTATGATACCAGA+TGG | - | chr5_2:17301752-17301771 | Msa0760700:intron | 45.0% | |
| TCAGTTGACAGTGAGATTCG+CGG | - | chr5_2:17301809-17301828 | Msa0760700:intron | 45.0% | |
| GCTCTTTGTTGCCATCCTTT+CGG | - | chr5_2:17301853-17301872 | Msa0760700:intron | 45.0% | |
| ACCAACAAGAACCGAAAGGA+TGG | + | chr5_2:17301867-17301886 | None:intergenic | 45.0% | |
| CAGTACCAACAAGAACCGAA+AGG | + | chr5_2:17301871-17301890 | None:intergenic | 45.0% | |
| ! | GTGCAGTGACTTTTAGCAAG+TGG | - | chr5_2:17302119-17302138 | Msa0760700:five_prime_UTR | 45.0% |
| GCAAGTGGTGTAGAAGGAAT+AGG | - | chr5_2:17302134-17302153 | Msa0760700:five_prime_UTR | 45.0% | |
| TTCAAGGGTCATGCTTTGCC+GGG | - | chr5_2:17299511-17299530 | Msa0760700:intron | 50.0% | |
| GCTATAGCACTGTAGCACAG+CGG | + | chr5_2:17300088-17300107 | None:intergenic | 50.0% | |
| GACCTCCTCTGTAGTATGGA+TGG | - | chr5_2:17300324-17300343 | Msa0760700:intron | 50.0% | |
| GTCCATCCATACTACAGAGG+AGG | + | chr5_2:17300329-17300348 | None:intergenic | 50.0% | |
| GAGGTCCATCCATACTACAG+AGG | + | chr5_2:17300332-17300351 | None:intergenic | 50.0% | |
| CTGTAGTATGGATGGACCTC+AGG | - | chr5_2:17300332-17300351 | Msa0760700:intron | 50.0% | |
| AGGATTCGTGCCTAAACCTG+AGG | + | chr5_2:17300351-17300370 | None:intergenic | 50.0% | |
| GAGCCAAACTGCCTACAACA+TGG | + | chr5_2:17300783-17300802 | None:intergenic | 50.0% | |
| CAGAAAATGCCATGGCAGCT+AGG | + | chr5_2:17301526-17301545 | None:intergenic | 50.0% | |
| ACCCTCCTCGTCTTCCAAAT+AGG | - | chr5_2:17301608-17301627 | Msa0760700:intron | 50.0% | |
| GTCCTATTTGGAAGACGAGG+AGG | + | chr5_2:17301613-17301632 | None:intergenic | 50.0% | |
| GTTGTTTGGAAGAAGGGCTC+CGG | + | chr5_2:17301657-17301676 | None:intergenic | 50.0% | |
| ATGCCGTTGCATAAATCGGC+TGG | + | chr5_2:17301683-17301702 | None:intergenic | 50.0% | |
| CTTTAGCGCTGCAAGGCATA+TGG | - | chr5_2:17301705-17301724 | Msa0760700:intron | 50.0% | |
| GCCATCCTTTCGGTTCTTGT+TGG | - | chr5_2:17301863-17301882 | Msa0760700:intron | 50.0% | |
| TCAAGGGTCATGCTTTGCCG+GGG | - | chr5_2:17299512-17299531 | Msa0760700:intron | 55.0% | |
| GCCCGAACACGAAACGTCTT+AGG | + | chr5_2:17299601-17299620 | None:intergenic | 55.0% | |
| CTCCCATCAAAACCCGGTAC+AGG | + | chr5_2:17299631-17299650 | None:intergenic | 55.0% | |
| !! | CTGTACCGGGTTTTGATGGG+AGG | - | chr5_2:17299629-17299648 | Msa0760700:intron | 55.0% |
| GTGGGACCTCCTCTGTAGTA+TGG | - | chr5_2:17300320-17300339 | Msa0760700:intron | 55.0% | |
| TTTGGAAGACGAGGAGGGTG+TGG | + | chr5_2:17301607-17301626 | None:intergenic | 55.0% | |
| AGACGTTTCGTGTTCGGGCG+TGG | - | chr5_2:17299602-17299621 | Msa0760700:intron | 60.0% | |
| TCGGGCGTGGAATCCTGTAC+CGG | - | chr5_2:17299615-17299634 | Msa0760700:intron | 60.0% | |
| GGCATCGCTTTAGCGCTGCA+AGG | - | chr5_2:17301698-17301717 | Msa0760700:intron | 60.0% | |
| CGGGCGTGGAATCCTGTACC+GGG | - | chr5_2:17299616-17299635 | Msa0760700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 17298487 | 17302177 | 17298487 | ID=Msa0760700;Name=Msa0760700 |
| chr5_2 | mRNA | 17298487 | 17302177 | 17298487 | ID=Msa0760700-mRNA-1;Parent=Msa0760700;Name=Msa0760700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=259|1|1|1|0.5|0.33|3|198|278 |
| chr5_2 | exon | 17298487 | 17299174 | 17298487 | ID=Msa0760700-mRNA-1:exon:7705;Parent=Msa0760700-mRNA-1 |
| chr5_2 | exon | 17300816 | 17301276 | 17300816 | ID=Msa0760700-mRNA-1:exon:7704;Parent=Msa0760700-mRNA-1 |
| chr5_2 | exon | 17302033 | 17302177 | 17302033 | ID=Msa0760700-mRNA-1:exon:7703;Parent=Msa0760700-mRNA-1 |
| chr5_2 | five_prime_UTR | 17302033 | 17302177 | 17302033 | ID=Msa0760700-mRNA-1:five_prime_utr;Parent=Msa0760700-mRNA-1 |
| chr5_2 | five_prime_UTR | 17301163 | 17301276 | 17301163 | ID=Msa0760700-mRNA-1:five_prime_utr;Parent=Msa0760700-mRNA-1 |
| chr5_2 | CDS | 17300816 | 17301162 | 17300816 | ID=Msa0760700-mRNA-1:cds;Parent=Msa0760700-mRNA-1 |
| chr5_2 | CDS | 17298685 | 17299174 | 17298685 | ID=Msa0760700-mRNA-1:cds;Parent=Msa0760700-mRNA-1 |
| chr5_2 | three_prime_UTR | 17298487 | 17298684 | 17298487 | ID=Msa0760700-mRNA-1:three_prime_utr;Parent=Msa0760700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
