AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150780 MtrunA17_Chr7g0240561 95.089 224 11 0 1 224 1 224 7.81e-158 436
Msa1150780 MtrunA17_Chr7g0240581 81.250 224 42 0 1 224 1 224 5.39e-135 378
Msa1150780 MtrunA17_Chr7g0240551 80.357 224 44 0 1 224 1 224 1.06e-129 364
Msa1150780 MtrunA17_Chr7g0240511 79.464 224 41 1 1 224 1 219 2.96e-125 353
Msa1150780 MtrunA17_Chr7g0240531 78.571 224 48 0 1 224 1 224 7.12e-125 352
Msa1150780 MtrunA17_Chr7g0240541 77.232 224 51 0 1 224 1 224 2.15e-124 351
Msa1150780 MtrunA17_Chr7g0240631 69.955 223 67 0 1 223 1 223 3.46e-117 333
Msa1150780 MtrunA17_Chr7g0240521 78.667 225 47 1 1 224 8 232 1.74e-116 331
Msa1150780 MtrunA17_Chr7g0240641 69.507 223 68 0 1 223 1 223 3.02e-115 328
Msa1150780 MtrunA17_Chr7g0240681 69.778 225 67 1 1 224 1 225 4.14e-114 325
Msa1150780 MtrunA17_Chr7g0240611 70.404 223 62 1 1 223 1 219 1.06e-113 324
Msa1150780 MtrunA17_Chr4g0008791 62.780 223 83 0 1 223 1 223 3.98e-105 302
Msa1150780 MtrunA17_Chr7g0240691 64.840 219 76 1 6 223 36 254 9.33e-105 303
Msa1150780 MtrunA17_Chr7g0240651 67.568 222 68 1 1 222 1 218 2.68e-98 285
Msa1150780 MtrunA17_Chr7g0240671 66.667 207 65 1 8 214 5 207 1.55e-97 283
Msa1150780 MtrunA17_Chr4g0008781 63.084 214 77 2 3 215 4 216 3.64e-96 280
Msa1150780 MtrunA17_Chr7g0240661 67.290 214 66 1 1 214 1 210 1.05e-93 273
Msa1150780 MtrunA17_Chr3g0132581 48.182 220 112 2 5 223 3 221 1.38e-65 202
Msa1150780 MtrunA17_Chr6g0483141 47.596 208 107 2 7 213 3 209 1.82e-65 202
Msa1150780 MtrunA17_Chr1g0196771 46.606 221 113 3 5 222 1 219 5.12e-64 198
Msa1150780 MtrunA17_Chr8g0379561 47.465 217 111 3 1 216 1 215 9.47e-63 195
Msa1150780 MtrunA17_Chr8g0379581 45.161 217 117 2 4 219 2 217 3.55e-61 191
Msa1150780 MtrunA17_Chr1g0212301 44.545 220 115 3 7 221 3 220 6.45e-60 187
Msa1150780 MtrunA17_Chr5g0417011 42.793 222 119 3 1 215 1 221 1.22e-56 179
Msa1150780 MtrunA17_Chr1g0196691 42.534 221 122 3 7 223 28 247 2.67e-56 179
Msa1150780 MtrunA17_Chr4g0029341 42.056 214 118 3 6 215 3 214 6.46e-56 177
Msa1150780 MtrunA17_Chr1g0196661 42.857 224 118 5 7 224 3 222 1.40e-55 176
Msa1150780 MtrunA17_Chr1g0196721 41.818 220 122 3 8 223 3 220 2.11e-53 171
Msa1150780 MtrunA17_Chr1g0196711 42.381 210 115 3 7 212 3 210 4.04e-52 167
Msa1150780 MtrunA17_Chr8g0363751 44.292 219 114 5 5 215 3 221 1.86e-50 164
Msa1150780 MtrunA17_Chr5g0415411 42.273 220 117 4 1 212 1 218 4.77e-49 160
Msa1150780 MtrunA17_Chr2g0312751 37.619 210 126 4 6 213 3 209 5.29e-44 147
Msa1150780 MtrunA17_Chr2g0312771 37.619 210 126 4 6 213 3 209 1.68e-43 145
Msa1150780 MtrunA17_Chr3g0107731 42.211 199 110 5 16 212 18 213 2.77e-42 142
Msa1150780 MtrunA17_Chr2g0312791 38.863 211 124 4 6 213 3 211 3.10e-42 142
Msa1150780 MtrunA17_Chr2g0312731 38.350 206 122 4 6 209 3 205 3.37e-42 142
Msa1150780 MtrunA17_Chr4g0069471 46.067 178 92 4 3 177 21 197 3.06e-41 139
Msa1150780 MtrunA17_Chr2g0312781 36.842 209 127 4 1 207 15 220 3.18e-41 140
Msa1150780 MtrunA17_Chr2g0312721 39.906 213 117 7 6 213 3 209 1.99e-40 137
Msa1150780 MtrunA17_Chr3g0107741 38.863 211 124 5 4 212 6 213 5.68e-40 137
Msa1150780 MtrunA17_Chr2g0312811 38.679 212 123 5 6 213 3 211 6.29e-40 136
Msa1150780 MtrunA17_Chr8g0391631 49.677 155 70 5 7 153 21 175 3.42e-39 133
Msa1150780 MtrunA17_Chr8g0357211 38.356 219 125 6 6 218 3 217 6.23e-39 134
Msa1150780 MtrunA17_Chr8g0357241 38.356 219 125 6 6 218 3 217 6.50e-39 134
Msa1150780 MtrunA17_Chr2g0312681 37.500 208 125 4 7 212 4 208 1.32e-37 130
Msa1150780 MtrunA17_Chr2g0312691 37.500 216 130 4 7 220 4 216 2.86e-37 129
Msa1150780 MtrunA17_Chr5g0433801 36.321 212 130 4 3 212 2 210 1.47e-35 125
Msa1150780 MtrunA17_Chr2g0312711 39.500 200 115 5 7 204 4 199 2.34e-32 117
Msa1150780 MtrunA17_Chr2g0313561 45.714 70 36 2 51 119 2 70 5.02e-16 70.5
Msa1150780 MtrunA17_Chr4g0076681 30.000 230 129 9 1 207 1 221 1.18e-12 65.1
Msa1150780 MtrunA17_Chr1g0181861 26.667 225 131 8 8 217 28 233 1.83e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150780 AT3G09270.1 53.571 224 99 5 4 223 2 224 1.12e-75 228
Msa1150780 AT2G29420.1 49.772 219 108 2 3 220 5 222 2.95e-75 227
Msa1150780 AT2G29450.1 49.275 207 103 2 3 207 2 208 2.22e-60 189
Msa1150780 AT2G29490.1 48.325 209 105 3 1 207 1 208 4.56e-60 188
Msa1150780 AT2G29480.1 47.847 209 106 3 1 207 1 208 1.79e-58 184
Msa1150780 AT2G29460.1 45.778 225 119 3 1 223 1 224 5.05e-58 183
Msa1150780 AT2G29470.1 46.190 210 109 4 1 207 1 209 1.65e-56 179
Msa1150780 AT2G29440.1 46.411 209 108 4 1 207 1 207 1.73e-55 177
Msa1150780 AT1G69930.1 38.938 226 132 3 2 221 7 232 7.73e-50 162
Msa1150780 AT1G59700.1 44.037 218 114 4 5 214 4 221 2.69e-48 159
Msa1150780 AT1G10370.1 41.176 221 121 4 1 214 1 219 9.07e-48 157
Msa1150780 AT1G59670.1 42.202 218 118 4 5 214 4 221 4.12e-47 155
Msa1150780 AT1G78320.1 40.865 208 118 4 5 210 2 206 7.27e-47 154
Msa1150780 AT5G62480.1 40.271 221 121 4 5 215 6 225 9.28e-47 155
Msa1150780 AT1G74590.1 39.091 220 127 3 1 214 1 219 1.53e-46 154
Msa1150780 AT1G27130.1 37.333 225 132 4 1 217 1 224 1.09e-45 152
Msa1150780 AT1G78340.1 42.105 209 116 4 6 212 3 208 1.26e-45 151
Msa1150780 AT1G78380.1 39.904 208 120 4 7 212 4 208 6.84e-44 147
Msa1150780 AT1G78370.1 40.201 199 114 4 16 212 13 208 1.12e-43 146
Msa1150780 AT1G10360.1 37.037 216 129 3 6 214 4 219 1.67e-43 146
Msa1150780 AT1G17170.1 38.710 217 127 5 6 220 3 215 2.30e-43 145
Msa1150780 AT1G27140.1 36.564 227 134 4 1 218 1 226 4.26e-43 145
Msa1150780 AT1G69920.1 37.118 229 130 5 1 217 26 252 2.55e-42 144
Msa1150780 AT1G17190.1 42.487 193 104 5 1 191 1 188 3.60e-41 140
Msa1150780 AT1G78360.1 40.191 209 119 5 7 212 4 209 1.06e-39 136
Msa1150780 AT1G17180.1 37.799 209 125 4 6 212 3 208 2.24e-39 135
Msa1150780 AT3G43800.1 37.198 207 121 6 4 204 2 205 2.08e-38 133
Msa1150780 AT1G53680.1 37.143 210 127 4 1 207 1 208 3.73e-38 132
Msa1150780 AT1G78320.2 32.850 207 109 4 5 210 2 179 9.52e-29 107
Msa1150780 AT5G62480.3 31.364 220 115 4 5 215 6 198 1.04e-27 105
Msa1150780 AT5G62480.2 31.364 220 116 4 5 215 6 199 1.07e-27 105
Msa1150780 AT2G02380.1 28.704 216 133 7 5 207 9 216 1.48e-14 70.5
Msa1150780 AT2G02390.3 28.444 225 133 7 3 207 4 220 2.22e-13 67.4
Msa1150780 AT2G02390.1 29.358 218 133 7 3 207 4 213 3.57e-13 66.6

Find 49 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGCCTTGGCTCGTTTC+TGG 0.160272 7_4:-34587661 Msa1150780:CDS
TAAAATTTCCATGGGACTTA+TGG 0.202862 7_4:-34586840 Msa1150780:three_prime_UTR
ATTTCAACCCTTGTAGAAAA+TGG 0.235130 7_4:+34587890 None:intergenic
CCTGTTACTTCTTGTACAAT+AGG 0.286054 7_4:+34587139 None:intergenic
TTGGGTGGTTGTTGAATTCT+TGG 0.290435 7_4:+34587068 None:intergenic
GAGCTCAAGGGCAAGTTCTT+TGG 0.302605 7_4:-34587217 Msa1150780:CDS
TCCATGGGACTTATGGCTTA+TGG 0.305487 7_4:-34586833 Msa1150780:three_prime_UTR
GCCTCGTAGAGAAGGGCTTT+TGG 0.332731 7_4:-34587029 Msa1150780:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.340787 7_4:+34587785 None:intergenic
AATTAGCATAGAAGTATATT+CGG 0.378495 7_4:+34586755 None:intergenic
TAAGGATCAGAAGGCAAGAT+TGG 0.379369 7_4:+34587686 None:intergenic
GTTCCTGTATTAGTTCATAA+TGG 0.400419 7_4:-34587770 Msa1150780:CDS
CACTAAGATGGCATCAAATC+AGG 0.403482 7_4:-34587945 Msa1150780:exon
TTCTTTGGTGGAGATGAGAT+TGG 0.406091 7_4:-34587202 Msa1150780:CDS
CCTATTGTACAAGAAGTAAC+AGG 0.429315 7_4:-34587139 Msa1150780:CDS
GTCCAAGTTCATAGATGATA+AGG 0.434027 7_4:-34587639 Msa1150780:intron
CTGTTACTTCTTGTACAATA+GGG 0.437463 7_4:+34587140 None:intergenic
TGGCTCCAATTGTAAAGCTT+AGG 0.444725 7_4:+34587088 None:intergenic
AATTTCCTAAGCTTTACAAT+TGG 0.445365 7_4:-34587093 Msa1150780:CDS
TGAAATAGCTCTAAAATTGA+AGG 0.446842 7_4:-34587873 Msa1150780:CDS
CAAATATGAGGAAGAAAAGC+AGG 0.457444 7_4:-34587840 Msa1150780:CDS
TACCTTATCATCTATGAACT+TGG 0.459673 7_4:+34587637 None:intergenic
ATCACAAGTGACTCTGATAT+AGG 0.471671 7_4:+34587743 None:intergenic
AAATATTGACTAATGGCTCT+TGG 0.474043 7_4:-34586702 Msa1150780:three_prime_UTR
GAAAATTTGCCTCGTAGAGA+AGG 0.475442 7_4:-34587037 Msa1150780:CDS
AGCTTGTAATAAAATTTCCA+TGG 0.480505 7_4:-34586849 Msa1150780:three_prime_UTR
AAATTAGATATATTGAGCCT+TGG 0.491800 7_4:-34586877 Msa1150780:three_prime_UTR
TTGCCATTATGAACTAATAC+AGG 0.495358 7_4:+34587767 None:intergenic
CTCAAGGGCAAGTTCTTTGG+TGG 0.497594 7_4:-34587214 Msa1150780:CDS
TTGAATATATTGATGAGACT+TGG 0.500568 7_4:-34587718 Msa1150780:CDS
TTCATAACGAGCTTTGAAGA+AGG 0.517849 7_4:+34587006 None:intergenic
GGGTGTTGAATACAAATATG+AGG 0.518356 7_4:-34587852 Msa1150780:CDS
AAATAGTTGAAGCACTAAGA+TGG 0.527927 7_4:-34587957 Msa1150780:exon
GCTTGTAATAAAATTTCCAT+GGG 0.537195 7_4:-34586848 Msa1150780:three_prime_UTR
TGATCCTTATAAAAGAGCCT+TGG 0.539754 7_4:-34587672 Msa1150780:CDS
AAAATTTGCCTCGTAGAGAA+GGG 0.551755 7_4:-34587036 Msa1150780:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.554660 7_4:-34587230 Msa1150780:CDS
TTATTACAAGCTGAAATCCA+AGG 0.557672 7_4:+34586860 None:intergenic
TCCATAAGCCATAAGTCCCA+TGG 0.566196 7_4:+34586832 None:intergenic
GAAATAGCTCTAAAATTGAA+GGG 0.600047 7_4:-34587872 Msa1150780:CDS
CAACAACCACCCAATTGTCA+AGG 0.606941 7_4:-34587059 Msa1150780:CDS
TTTCTTGAGAATGAGCTCAA+GGG 0.611348 7_4:-34587229 Msa1150780:CDS
AAATATGAGGAAGAAAAGCA+GGG 0.615123 7_4:-34587839 Msa1150780:CDS
CTTATGGAAGTATAATGAGA+GGG 0.634339 7_4:-34586817 Msa1150780:three_prime_UTR
GCTTATGGAAGTATAATGAG+AGG 0.638265 7_4:-34586818 Msa1150780:three_prime_UTR
GCCAAAAGCCCTTCTCTACG+AGG 0.649932 7_4:+34587028 None:intergenic
ACCAGTGTATGATTCCTGCA+TGG 0.670185 7_4:-34587321 Msa1150780:intron
CTTGGACCAGAAACGAGCCA+AGG 0.694386 7_4:+34587655 None:intergenic
AATATGAGGAAGAAAAGCAG+GGG 0.696106 7_4:-34587838 Msa1150780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATAATGAACT+TGG + chr7_4:34587112-34587131 None:intergenic 10.0%
!! ATATATATATATAATGAACT+TGG + chr7_4:34587112-34587131 None:intergenic 10.0%
!!! GTCTTTTTTCTTTTTTTTAA+TGG + chr7_4:34587175-34587194 None:intergenic 15.0%
!!! TTTGAATATTGATTAGAAAA+AGG - chr7_4:34587218-34587237 Msa1150780:CDS 15.0%
!!! TTGAATATTGATTAGAAAAA+GGG - chr7_4:34587219-34587238 Msa1150780:CDS 15.0%
!! TAATCATATTTGAGAAATAT+TGG + chr7_4:34587246-34587265 None:intergenic 15.0%
!! TTAAGGTCATTATAAAAATT+AGG + chr7_4:34587331-34587350 None:intergenic 15.0%
!!! GTCTTTTTTCTTTTTTTTAA+TGG + chr7_4:34587175-34587194 None:intergenic 15.0%
!!! TTTGAATATTGATTAGAAAA+AGG - chr7_4:34587218-34587237 Msa1150780:CDS 15.0%
!!! TTGAATATTGATTAGAAAAA+GGG - chr7_4:34587219-34587238 Msa1150780:CDS 15.0%
!! TAATCATATTTGAGAAATAT+TGG + chr7_4:34587246-34587265 None:intergenic 15.0%
!! TTAAGGTCATTATAAAAATT+AGG + chr7_4:34587331-34587350 None:intergenic 15.0%
!!! ATTTACTTTAACAACGTTTT+TGG + chr7_4:34586707-34586726 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG + chr7_4:34587928-34587947 None:intergenic 20.0%
!!! ATTTACTTTAACAACGTTTT+TGG + chr7_4:34586707-34586726 None:intergenic 20.0%
!!! AATTAGCATAGAAGTATATT+CGG + chr7_4:34587928-34587947 None:intergenic 20.0%
!!! TGAAATAGCTCTAAAATTGA+AGG - chr7_4:34586807-34586826 Msa1150780:three_prime_UTR 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG - chr7_4:34586808-34586827 Msa1150780:three_prime_UTR 25.0%
! TTGAATATATTGATGAGACT+TGG - chr7_4:34586962-34586981 Msa1150780:three_prime_UTR 25.0%
! TCAAATATGATTAAGTTAGC+TGG - chr7_4:34587253-34587272 Msa1150780:CDS 25.0%
! CAAATATGATTAAGTTAGCT+GGG - chr7_4:34587254-34587273 Msa1150780:CDS 25.0%
! AATTTCCTAAGCTTTACAAT+TGG - chr7_4:34587587-34587606 Msa1150780:intron 25.0%
!! TTTTATAATCATGTGCATTG+TGG - chr7_4:34587723-34587742 Msa1150780:CDS 25.0%
! AAATTAGATATATTGAGCCT+TGG - chr7_4:34587803-34587822 Msa1150780:CDS 25.0%
! AGCTTGTAATAAAATTTCCA+TGG - chr7_4:34587831-34587850 Msa1150780:CDS 25.0%
! GCTTGTAATAAAATTTCCAT+GGG - chr7_4:34587832-34587851 Msa1150780:CDS 25.0%
!! AGTCGAAAAATATTGACTAA+TGG - chr7_4:34587971-34587990 Msa1150780:five_prime_UTR 25.0%
!!! TGAAATAGCTCTAAAATTGA+AGG - chr7_4:34586807-34586826 Msa1150780:three_prime_UTR 25.0%
!!! GAAATAGCTCTAAAATTGAA+GGG - chr7_4:34586808-34586827 Msa1150780:three_prime_UTR 25.0%
! TTGAATATATTGATGAGACT+TGG - chr7_4:34586962-34586981 Msa1150780:three_prime_UTR 25.0%
! TCAAATATGATTAAGTTAGC+TGG - chr7_4:34587253-34587272 Msa1150780:CDS 25.0%
! CAAATATGATTAAGTTAGCT+GGG - chr7_4:34587254-34587273 Msa1150780:CDS 25.0%
! AATTTCCTAAGCTTTACAAT+TGG - chr7_4:34587587-34587606 Msa1150780:intron 25.0%
!! TTTTATAATCATGTGCATTG+TGG - chr7_4:34587723-34587742 Msa1150780:CDS 25.0%
! AAATTAGATATATTGAGCCT+TGG - chr7_4:34587803-34587822 Msa1150780:CDS 25.0%
! AGCTTGTAATAAAATTTCCA+TGG - chr7_4:34587831-34587850 Msa1150780:CDS 25.0%
! GCTTGTAATAAAATTTCCAT+GGG - chr7_4:34587832-34587851 Msa1150780:CDS 25.0%
!! AGTCGAAAAATATTGACTAA+TGG - chr7_4:34587971-34587990 Msa1150780:five_prime_UTR 25.0%
! AAATAGTTGAAGCACTAAGA+TGG - chr7_4:34586723-34586742 Msa1150780:three_prime_UTR 30.0%
ATTTCAACCCTTGTAGAAAA+TGG + chr7_4:34586793-34586812 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG - chr7_4:34586841-34586860 Msa1150780:three_prime_UTR 30.0%
ACAGGAACTTTCTTATAAAC+AGG + chr7_4:34586898-34586917 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG - chr7_4:34586910-34586929 Msa1150780:three_prime_UTR 30.0%
TTGCCATTATGAACTAATAC+AGG + chr7_4:34586916-34586935 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG + chr7_4:34587046-34587065 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG + chr7_4:34587104-34587123 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG + chr7_4:34587543-34587562 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG + chr7_4:34587633-34587652 None:intergenic 30.0%
TTATTACAAGCTGAAATCCA+AGG + chr7_4:34587823-34587842 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG - chr7_4:34587840-34587859 Msa1150780:CDS 30.0%
! CTTATGGAAGTATAATGAGA+GGG - chr7_4:34587863-34587882 Msa1150780:CDS 30.0%
! AAATATTGACTAATGGCTCT+TGG - chr7_4:34587978-34587997 Msa1150780:five_prime_UTR 30.0%
! AAATAGTTGAAGCACTAAGA+TGG - chr7_4:34586723-34586742 Msa1150780:three_prime_UTR 30.0%
ATTTCAACCCTTGTAGAAAA+TGG + chr7_4:34586793-34586812 None:intergenic 30.0%
AAATATGAGGAAGAAAAGCA+GGG - chr7_4:34586841-34586860 Msa1150780:three_prime_UTR 30.0%
ACAGGAACTTTCTTATAAAC+AGG + chr7_4:34586898-34586917 None:intergenic 30.0%
GTTCCTGTATTAGTTCATAA+TGG - chr7_4:34586910-34586929 Msa1150780:three_prime_UTR 30.0%
TTGCCATTATGAACTAATAC+AGG + chr7_4:34586916-34586935 None:intergenic 30.0%
TACCTTATCATCTATGAACT+TGG + chr7_4:34587046-34587065 None:intergenic 30.0%
! ATATAATGAACTTGGACTAG+AGG + chr7_4:34587104-34587123 None:intergenic 30.0%
! CTGTTACTTCTTGTACAATA+GGG + chr7_4:34587543-34587562 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG + chr7_4:34587633-34587652 None:intergenic 30.0%
TTATTACAAGCTGAAATCCA+AGG + chr7_4:34587823-34587842 None:intergenic 30.0%
TAAAATTTCCATGGGACTTA+TGG - chr7_4:34587840-34587859 Msa1150780:CDS 30.0%
! CTTATGGAAGTATAATGAGA+GGG - chr7_4:34587863-34587882 Msa1150780:CDS 30.0%
!! GGGTGTTGAATACAAATATG+AGG - chr7_4:34586828-34586847 Msa1150780:three_prime_UTR 35.0%
CAAATATGAGGAAGAAAAGC+AGG - chr7_4:34586840-34586859 Msa1150780:three_prime_UTR 35.0%
AATATGAGGAAGAAAAGCAG+GGG - chr7_4:34586842-34586861 Msa1150780:three_prime_UTR 35.0%
ATCACAAGTGACTCTGATAT+AGG + chr7_4:34586940-34586959 None:intergenic 35.0%
! GCTCTTTTATAAGGATCAGA+AGG + chr7_4:34587006-34587025 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG - chr7_4:34587008-34587027 Msa1150780:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG - chr7_4:34587041-34587060 Msa1150780:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG + chr7_4:34587072-34587091 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG + chr7_4:34587348-34587367 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG - chr7_4:34587420-34587439 Msa1150780:intron 35.0%
ATTTCTTGAGAATGAGCTCA+AGG - chr7_4:34587450-34587469 Msa1150780:intron 35.0%
TTTCTTGAGAATGAGCTCAA+GGG - chr7_4:34587451-34587470 Msa1150780:intron 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG - chr7_4:34587515-34587534 Msa1150780:intron 35.0%
! CCTGTTACTTCTTGTACAAT+AGG + chr7_4:34587544-34587563 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG - chr7_4:34587541-34587560 Msa1150780:intron 35.0%
! AATTTTCCTTGACAATTGGG+TGG + chr7_4:34587630-34587649 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG + chr7_4:34587634-34587653 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG - chr7_4:34587644-34587663 Msa1150780:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG + chr7_4:34587677-34587696 None:intergenic 35.0%
! GCTTATGGAAGTATAATGAG+AGG - chr7_4:34587862-34587881 Msa1150780:CDS 35.0%
!! GGGTGTTGAATACAAATATG+AGG - chr7_4:34586828-34586847 Msa1150780:three_prime_UTR 35.0%
CAAATATGAGGAAGAAAAGC+AGG - chr7_4:34586840-34586859 Msa1150780:three_prime_UTR 35.0%
AATATGAGGAAGAAAAGCAG+GGG - chr7_4:34586842-34586861 Msa1150780:three_prime_UTR 35.0%
ATCACAAGTGACTCTGATAT+AGG + chr7_4:34586940-34586959 None:intergenic 35.0%
! GCTCTTTTATAAGGATCAGA+AGG + chr7_4:34587006-34587025 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG - chr7_4:34587008-34587027 Msa1150780:CDS 35.0%
GTCCAAGTTCATAGATGATA+AGG - chr7_4:34587041-34587060 Msa1150780:CDS 35.0%
AAGAAAAGGGATCAGAAGAT+TGG + chr7_4:34587072-34587091 None:intergenic 35.0%
! TACACTGGTCTCACAAATTA+AGG + chr7_4:34587348-34587367 None:intergenic 35.0%
!!! GAGTTTTGAGGAAACAAAAG+AGG - chr7_4:34587420-34587439 Msa1150780:intron 35.0%
ATTTCTTGAGAATGAGCTCA+AGG - chr7_4:34587450-34587469 Msa1150780:intron 35.0%
TTTCTTGAGAATGAGCTCAA+GGG - chr7_4:34587451-34587470 Msa1150780:intron 35.0%
! CTGCTGTCTTTATAGCTTTT+TGG - chr7_4:34587515-34587534 Msa1150780:intron 35.0%
! CCTGTTACTTCTTGTACAAT+AGG + chr7_4:34587544-34587563 None:intergenic 35.0%
CCTATTGTACAAGAAGTAAC+AGG - chr7_4:34587541-34587560 Msa1150780:intron 35.0%
! AATTTTCCTTGACAATTGGG+TGG + chr7_4:34587630-34587649 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG + chr7_4:34587634-34587653 None:intergenic 35.0%
AAAATTTGCCTCGTAGAGAA+GGG - chr7_4:34587644-34587663 Msa1150780:CDS 35.0%
!! TTCATAACGAGCTTTGAAGA+AGG + chr7_4:34587677-34587696 None:intergenic 35.0%
! GCTTATGGAAGTATAATGAG+AGG - chr7_4:34587862-34587881 Msa1150780:CDS 35.0%
CACTAAGATGGCATCAAATC+AGG - chr7_4:34586735-34586754 Msa1150780:three_prime_UTR 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG - chr7_4:34586754-34586773 Msa1150780:three_prime_UTR 40.0%
! TGGGAAGTCCATTTTCTACA+AGG - chr7_4:34586782-34586801 Msa1150780:three_prime_UTR 40.0%
! GGGAAGTCCATTTTCTACAA+GGG - chr7_4:34586783-34586802 Msa1150780:three_prime_UTR 40.0%
TAAGGATCAGAAGGCAAGAT+TGG + chr7_4:34586997-34587016 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG - chr7_4:34587408-34587427 Msa1150780:intron 40.0%
TTCTTTGGTGGAGATGAGAT+TGG - chr7_4:34587478-34587497 Msa1150780:intron 40.0%
TGGCTCCAATTGTAAAGCTT+AGG + chr7_4:34587595-34587614 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG + chr7_4:34587615-34587634 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG - chr7_4:34587643-34587662 Msa1150780:CDS 40.0%
CACTAAGATGGCATCAAATC+AGG - chr7_4:34586735-34586754 Msa1150780:three_prime_UTR 40.0%
! CAGGAAGAAGTGAAGCTTTT+CGG - chr7_4:34586754-34586773 Msa1150780:three_prime_UTR 40.0%
! TGGGAAGTCCATTTTCTACA+AGG - chr7_4:34586782-34586801 Msa1150780:three_prime_UTR 40.0%
! GGGAAGTCCATTTTCTACAA+GGG - chr7_4:34586783-34586802 Msa1150780:three_prime_UTR 40.0%
TAAGGATCAGAAGGCAAGAT+TGG + chr7_4:34586997-34587016 None:intergenic 40.0%
! AGAACGTGAGAAGAGTTTTG+AGG - chr7_4:34587408-34587427 Msa1150780:intron 40.0%
TTCTTTGGTGGAGATGAGAT+TGG - chr7_4:34587478-34587497 Msa1150780:intron 40.0%
TGGCTCCAATTGTAAAGCTT+AGG + chr7_4:34587595-34587614 None:intergenic 40.0%
TTGGGTGGTTGTTGAATTCT+TGG + chr7_4:34587615-34587634 None:intergenic 40.0%
GAAAATTTGCCTCGTAGAGA+AGG - chr7_4:34587643-34587662 Msa1150780:CDS 40.0%
! AGTGAAGCTTTTCGGACTTG+TGG - chr7_4:34586762-34586781 Msa1150780:three_prime_UTR 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG - chr7_4:34586763-34586782 Msa1150780:three_prime_UTR 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG + chr7_4:34587015-34587034 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG + chr7_4:34587085-34587104 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG + chr7_4:34587086-34587105 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG - chr7_4:34587359-34587378 Msa1150780:intron 45.0%
TCCATGCAGGAATCATACAC+TGG + chr7_4:34587363-34587382 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG + chr7_4:34587376-34587395 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG - chr7_4:34587621-34587640 Msa1150780:intron 45.0%
TCCATGGGACTTATGGCTTA+TGG - chr7_4:34587847-34587866 Msa1150780:CDS 45.0%
TCCATAAGCCATAAGTCCCA+TGG + chr7_4:34587851-34587870 None:intergenic 45.0%
! AGTGAAGCTTTTCGGACTTG+TGG - chr7_4:34586762-34586781 Msa1150780:three_prime_UTR 45.0%
! GTGAAGCTTTTCGGACTTGT+GGG - chr7_4:34586763-34586782 Msa1150780:three_prime_UTR 45.0%
! CGAGCCAAGGCTCTTTTATA+AGG + chr7_4:34587015-34587034 None:intergenic 45.0%
GAGGTCACACAGCAAGAAAA+GGG + chr7_4:34587085-34587104 None:intergenic 45.0%
AGAGGTCACACAGCAAGAAA+AGG + chr7_4:34587086-34587105 None:intergenic 45.0%
ACCAGTGTATGATTCCTGCA+TGG - chr7_4:34587359-34587378 Msa1150780:intron 45.0%
TCCATGCAGGAATCATACAC+TGG + chr7_4:34587363-34587382 None:intergenic 45.0%
! GTGAAAGCAGTTTTCCATGC+AGG + chr7_4:34587376-34587395 None:intergenic 45.0%
CAACAACCACCCAATTGTCA+AGG - chr7_4:34587621-34587640 Msa1150780:intron 45.0%
TCCATGGGACTTATGGCTTA+TGG - chr7_4:34587847-34587866 Msa1150780:CDS 45.0%
TCCATAAGCCATAAGTCCCA+TGG + chr7_4:34587851-34587870 None:intergenic 45.0%
! AAAGAGCCTTGGCTCGTTTC+TGG - chr7_4:34587019-34587038 Msa1150780:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG - chr7_4:34587463-34587482 Msa1150780:intron 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG - chr7_4:34587466-34587485 Msa1150780:intron 50.0%
! AAAGAGCCTTGGCTCGTTTC+TGG - chr7_4:34587019-34587038 Msa1150780:CDS 50.0%
GAGCTCAAGGGCAAGTTCTT+TGG - chr7_4:34587463-34587482 Msa1150780:intron 50.0%
CTCAAGGGCAAGTTCTTTGG+TGG - chr7_4:34587466-34587485 Msa1150780:intron 50.0%
CTTGGACCAGAAACGAGCCA+AGG + chr7_4:34587028-34587047 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG - chr7_4:34587651-34587670 Msa1150780:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG + chr7_4:34587655-34587674 None:intergenic 55.0%
CTTGGACCAGAAACGAGCCA+AGG + chr7_4:34587028-34587047 None:intergenic 55.0%
! GCCTCGTAGAGAAGGGCTTT+TGG - chr7_4:34587651-34587670 Msa1150780:CDS 55.0%
GCCAAAAGCCCTTCTCTACG+AGG + chr7_4:34587655-34587674 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 34586702 34588000 34586702 ID=Msa1150780;Name=Msa1150780
chr7_4 mRNA 34586702 34588000 34586702 ID=Msa1150780-mRNA-1;Parent=Msa1150780;Name=Msa1150780-mRNA-1;_AED=0.40;_eAED=0.40;_QI=40|1|1|1|1|1|2|283|224
chr7_4 exon 34586702 34587338 34586702 ID=Msa1150780-mRNA-1:exon:8214;Parent=Msa1150780-mRNA-1
chr7_4 exon 34587640 34588000 34587640 ID=Msa1150780-mRNA-1:exon:8213;Parent=Msa1150780-mRNA-1
chr7_4 five_prime_UTR 34587961 34588000 34587961 ID=Msa1150780-mRNA-1:five_prime_utr;Parent=Msa1150780-mRNA-1
chr7_4 CDS 34587640 34587960 34587640 ID=Msa1150780-mRNA-1:cds;Parent=Msa1150780-mRNA-1
chr7_4 CDS 34586985 34587338 34586985 ID=Msa1150780-mRNA-1:cds;Parent=Msa1150780-mRNA-1
chr7_4 three_prime_UTR 34586702 34586984 34586702 ID=Msa1150780-mRNA-1:three_prime_utr;Parent=Msa1150780-mRNA-1
Gene Sequence

>Msa1150780

ATGGCATCAAATCAGGAAGAAGTGAAGCTTTTCGGACTTGTGGGAAGTCCATTTTCTACAAGGGTTGAAATAGCTCTAAAATTGAAGGGTGTTGAATACAAATATGAGGAAGAAAAGCAGGGGAACTTGAGTGATACAGTCATTAAATACAATCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGGCAAGCCTATATCAGAGTCACTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAATCCAATCTTGCCTTCTGATCCTTATAAAAGAGCCTTGGCTCGTTTCTGGTCCAAGTTCATAGATGATAAGTGTATGATTCCTGCATGGAAAACTGCTTTCACTCTTGATGAGAAAGAACGTGAGAAGAGTTTTGAGGAAACAAAAGAGGCTTTTCAATTTCTTGAGAATGAGCTCAAGGGCAAGTTCTTTGGTGGAGATGAGATTGGACTTATTGACATTACTGCTGTCTTTATAGCTTTTTGGTTCCCTATTGTACAAGAAGTAACAGGACTCAAGTTATTCACAAGTGAGAAATTTCCTAAGCTTTACAATTGGAGCCAAGAATTCAACAACCACCCAATTGTCAAGGAAAATTTGCCTCGTAGAGAAGGGCTTTTGGCCTTCTTCAAAGCTCGTTATGAAAGTCTTGTTGCTTCAAAATAG

Protein sequence

>Msa1150780

MASNQEEVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISESLVILEYIDETWKQNPILPSDPYKRALARFWSKFIDDKCMIPAWKTAFTLDEKEREKSFEETKEAFQFLENELKGKFFGGDEIGLIDITAVFIAFWFPIVQEVTGLKLFTSEKFPKLYNWSQEFNNHPIVKENLPRREGLLAFFKARYESLVASK*