AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778910 MtrunA17_Chr5g0434841 64.495 307 59 5 90 348 15 319 1.24e-121 353
Msa0778910 MtrunA17_Chr5g0434831 77.957 186 36 3 90 272 2 185 1.31e-88 264
Msa0778910 MtrunA17_Chr5g0434911 55.513 263 97 8 92 344 18 270 5.22e-83 253
Msa0778910 MtrunA17_Chr5g0434931 50.758 264 110 5 90 344 30 282 1.16e-81 250
Msa0778910 MtrunA17_Chr7g0228991 50.000 264 108 8 90 344 24 272 1.61e-76 236
Msa0778910 MtrunA17_Chr7g0220341 52.075 265 97 12 94 344 24 272 1.74e-75 234
Msa0778910 MtrunA17_Chr8g0360111 51.538 260 108 7 86 344 16 258 3.56e-71 222
Msa0778910 MtrunA17_Chr7g0240821 38.974 195 103 4 99 284 5 192 7.89e-37 132
Msa0778910 MtrunA17_Chr7g0229101 43.805 226 90 11 127 341 4 203 5.50e-34 124
Msa0778910 MtrunA17_Chr4g0070611 43.448 145 78 2 91 234 8 149 6.77e-31 119
Msa0778910 MtrunA17_Chr4g0070641 43.448 145 78 2 91 234 8 149 7.48e-31 115
Msa0778910 MtrunA17_Chr5g0434901 53.509 114 48 2 129 241 7 116 2.98e-30 112
Msa0778910 MtrunA17_Chr7g0274581 52.830 106 49 1 94 198 11 116 1.94e-29 112
Msa0778910 MtrunA17_Chr4g0022911 41.497 147 78 2 94 232 12 158 2.33e-29 114
Msa0778910 MtrunA17_Chr4g0022931 47.934 121 62 1 94 213 12 132 3.50e-29 113
Msa0778910 MtrunA17_Chr2g0323351 43.165 139 76 3 94 231 11 147 7.28e-29 112
Msa0778910 MtrunA17_Chr7g0229131 43.125 160 77 5 127 284 4 151 9.85e-29 109
Msa0778910 MtrunA17_Chr3g0121241 48.598 107 54 1 94 199 41 147 4.01e-28 111
Msa0778910 MtrunA17_Chr4g0022901 45.833 120 64 1 94 212 12 131 4.86e-28 110
Msa0778910 MtrunA17_Chr1g0167691 47.222 108 56 1 93 199 10 117 6.32e-28 109
Msa0778910 MtrunA17_Chr5g0410961 51.402 107 51 1 94 199 11 117 7.05e-28 111
Msa0778910 MtrunA17_Chr7g0261281 44.186 129 71 1 94 221 11 139 1.18e-27 109
Msa0778910 MtrunA17_Chr3g0117091 37.931 174 90 5 95 254 12 181 4.95e-27 109
Msa0778910 MtrunA17_Chr1g0187761 44.882 127 66 2 94 219 11 134 6.18e-27 107
Msa0778910 MtrunA17_Chr1g0203411 49.057 106 53 1 94 198 11 116 6.96e-27 107
Msa0778910 MtrunA17_Chr1g0167661 46.847 111 58 1 93 202 10 120 1.10e-26 106
Msa0778910 MtrunA17_Chr5g0435101 48.113 106 54 1 95 199 11 116 1.38e-26 105
Msa0778910 MtrunA17_Chr3g0115821 48.598 107 54 1 94 199 11 117 2.13e-26 107
Msa0778910 MtrunA17_Chr3g0092401 44.186 129 71 1 94 221 12 140 2.78e-26 106
Msa0778910 MtrunA17_Chr4g0048511 46.847 111 58 1 90 199 8 118 3.91e-26 107
Msa0778910 MtrunA17_Chr7g0217221 49.057 106 53 1 94 198 11 116 4.23e-26 105
Msa0778910 MtrunA17_Chr6g0453471 48.113 106 54 1 94 198 11 116 5.87e-26 106
Msa0778910 MtrunA17_Chr1g0211161 40.385 156 74 5 95 235 13 164 1.63e-25 102
Msa0778910 MtrunA17_Chr2g0281071 46.847 111 58 1 90 199 8 118 1.77e-25 105
Msa0778910 MtrunA17_Chr4g0037141 47.115 104 54 1 97 199 14 117 2.59e-25 103
Msa0778910 MtrunA17_Chr5g0395281 46.729 107 56 1 94 199 11 117 3.31e-25 103
Msa0778910 MtrunA17_Chr8g0343831 47.706 109 56 1 91 198 4 112 3.71e-25 102
Msa0778910 MtrunA17_Chr7g0254411 48.113 106 54 1 94 198 11 116 4.30e-25 103
Msa0778910 MtrunA17_Chr7g0275911 46.226 106 56 1 94 198 11 116 4.41e-25 102
Msa0778910 MtrunA17_Chr2g0323411 47.664 107 55 1 94 199 11 117 6.20e-25 103
Msa0778910 MtrunA17_Chr4g0042671 47.170 106 55 1 94 198 11 116 6.91e-25 104
Msa0778910 MtrunA17_Chr8g0342541 46.226 106 56 1 95 199 12 117 1.44e-24 102
Msa0778910 MtrunA17_Chr4g0060721 47.170 106 55 1 94 198 12 117 1.54e-24 102
Msa0778910 MtrunA17_Chr7g0270891 48.571 105 53 1 95 198 12 116 1.82e-24 102
Msa0778910 MtrunA17_Chr4g0022881 40.000 135 77 3 94 224 11 145 1.88e-24 99.8
Msa0778910 MtrunA17_Chr4g0039971 47.664 107 55 1 94 199 12 118 2.02e-24 102
Msa0778910 MtrunA17_Chr4g0058631 40.690 145 68 3 95 221 12 156 2.63e-24 102
Msa0778910 MtrunA17_Chr3g0135311 41.538 130 73 3 95 222 12 140 3.21e-24 101
Msa0778910 MtrunA17_Chr4g0055981 41.935 124 70 2 95 217 55 177 3.64e-24 99.0
Msa0778910 MtrunA17_Chr7g0264641 49.533 107 52 2 95 199 12 118 3.98e-24 99.8
Msa0778910 MtrunA17_Chr6g0452271 46.789 109 51 2 95 199 12 117 4.22e-24 101
Msa0778910 MtrunA17_Chr8g0346561 44.954 109 59 1 91 198 8 116 4.89e-24 100
Msa0778910 MtrunA17_Chr1g0152011 41.880 117 66 2 95 209 12 128 4.96e-24 100
Msa0778910 MtrunA17_Chr3g0103281 48.571 105 53 1 95 198 12 116 4.99e-24 100
Msa0778910 MtrunA17_Chr1g0151941 45.794 107 56 2 95 199 12 118 5.15e-24 99.0
Msa0778910 MtrunA17_Chr1g0193801 47.619 105 54 1 95 198 12 116 5.72e-24 101
Msa0778910 MtrunA17_Chr5g0400821 43.220 118 65 2 95 210 12 129 5.97e-24 100
Msa0778910 MtrunA17_Chr8g0342521 44.340 106 58 1 95 199 12 117 8.70e-24 100
Msa0778910 MtrunA17_Chr7g0217741 46.226 106 56 1 94 198 11 116 1.29e-23 99.4
Msa0778910 MtrunA17_Chr1g0203441 44.348 115 63 1 96 209 14 128 1.45e-23 98.2
Msa0778910 MtrunA17_Chr4g0044421 46.226 106 56 1 97 201 14 119 2.15e-23 95.9
Msa0778910 MtrunA17_Chr3g0131121 40.458 131 74 2 97 226 14 141 3.03e-23 98.2
Msa0778910 MtrunA17_Chr6g0470971 46.789 109 57 1 96 203 15 123 3.64e-23 97.4
Msa0778910 MtrunA17_Chr8g0385321 46.602 103 54 1 97 198 14 116 3.80e-23 98.2
Msa0778910 MtrunA17_Chr5g0417821 43.119 109 61 1 92 199 4 112 4.12e-23 97.4
Msa0778910 MtrunA17_Chr6g0453211 49.000 100 50 1 94 192 11 110 5.74e-23 97.8
Msa0778910 MtrunA17_Chr4g0068061 46.226 106 56 1 94 198 11 116 1.07e-22 97.4
Msa0778910 MtrunA17_Chr1g0194951 37.908 153 86 2 91 242 8 152 1.17e-22 97.4
Msa0778910 MtrunA17_Chr4g0022891 43.689 103 57 1 94 195 11 113 1.62e-22 94.7
Msa0778910 MtrunA17_Chr1g0193371 45.714 105 56 1 95 198 12 116 2.03e-22 97.1
Msa0778910 MtrunA17_Chr4g0028311 46.729 107 55 2 95 199 12 118 2.19e-22 96.3
Msa0778910 MtrunA17_Chr2g0330041 44.444 108 59 1 93 199 10 117 3.31e-22 96.7
Msa0778910 MtrunA17_Chr5g0395221 51.282 78 38 0 94 171 11 88 3.39e-22 89.4
Msa0778910 MtrunA17_Chr8g0387421 43.810 105 58 1 95 198 12 116 6.90e-22 94.7
Msa0778910 MtrunA17_Chr8g0342481 45.794 107 56 2 95 199 12 118 8.35e-22 95.5
Msa0778910 MtrunA17_Chr2g0327821 42.202 109 62 1 95 202 6 114 9.99e-22 92.4
Msa0778910 MtrunA17_Chr3g0099131 42.308 104 59 1 95 197 41 144 2.28e-21 95.1
Msa0778910 MtrunA17_Chr6g0487491 44.348 115 54 2 95 199 12 126 2.75e-21 92.0
Msa0778910 MtrunA17_Chr8g0349261 45.370 108 57 2 94 199 12 119 4.14e-21 92.0
Msa0778910 MtrunA17_Chr4g0042611 56.522 69 30 0 95 163 12 80 4.32e-21 86.3
Msa0778910 MtrunA17_Chr8g0342511 48.148 81 42 0 95 175 12 92 6.56e-21 86.3
Msa0778910 MtrunA17_Chr1g0209661 42.857 105 59 1 95 198 27 131 6.98e-21 91.7
Msa0778910 MtrunA17_Chr2g0323321 44.211 95 43 2 94 178 10 104 8.32e-21 86.7
Msa0778910 MtrunA17_Chr7g0228891 44.340 106 58 1 94 198 11 116 8.60e-21 90.9
Msa0778910 MtrunA17_Chr2g0309911 40.909 110 64 1 91 199 7 116 9.61e-21 91.3
Msa0778910 MtrunA17_Chr5g0434891 41.096 146 51 7 181 317 23 142 1.01e-20 87.4
Msa0778910 MtrunA17_Chr2g0311221 44.000 100 55 1 95 193 14 113 1.10e-20 91.3
Msa0778910 MtrunA17_Chr2g0327351 48.000 100 50 2 95 192 12 111 1.31e-20 90.9
Msa0778910 MtrunA17_Chr1g0180391 42.342 111 63 1 95 204 19 129 1.36e-20 89.4
Msa0778910 MtrunA17_Chr4g0054391 45.918 98 51 2 95 190 12 109 2.78e-20 89.7
Msa0778910 MtrunA17_Chr4g0057031 43.925 107 59 1 94 199 11 117 3.03e-20 89.4
Msa0778910 MtrunA17_Chr7g0228231 41.026 117 66 2 95 210 14 128 8.66e-20 86.7
Msa0778910 MtrunA17_Chr7g0271241 47.423 97 50 1 95 190 12 108 8.98e-20 89.4
Msa0778910 MtrunA17_Chr8g0342531 48.101 79 41 0 95 173 12 90 1.12e-19 85.1
Msa0778910 MtrunA17_Chr5g0397231 43.434 99 55 1 95 192 12 110 1.46e-19 88.2
Msa0778910 MtrunA17_Chr3g0110351 44.340 106 58 1 94 198 11 116 1.54e-19 87.8
Msa0778910 MtrunA17_Chr3g0080861 40.000 105 62 1 95 198 37 141 1.67e-19 89.7
Msa0778910 MtrunA17_Chr2g0328771 40.952 105 61 1 95 198 20 124 1.76e-19 87.8
Msa0778910 MtrunA17_Chr5g0440781 42.308 104 58 1 95 196 12 115 1.88e-19 85.1
Msa0778910 MtrunA17_Chr1g0168661 39.837 123 70 2 96 217 22 141 2.08e-19 86.7
Msa0778910 MtrunA17_Chr8g0354661 41.071 112 63 2 89 197 29 140 2.36e-19 89.4
Msa0778910 MtrunA17_Chr5g0434571 44.340 106 58 1 94 198 47 152 2.54e-19 87.8
Msa0778910 MtrunA17_Chr1g0186061 40.650 123 69 2 96 217 21 140 2.62e-19 86.3
Msa0778910 MtrunA17_Chr4g0032401 40.952 105 61 1 95 198 17 121 5.00e-19 86.7
Msa0778910 MtrunA17_Chr4g0072751 45.000 100 53 2 95 192 12 111 5.18e-19 87.0
Msa0778910 MtrunA17_Chr1g0194291 41.964 112 64 1 88 198 14 125 5.20e-19 85.5
Msa0778910 MtrunA17_Chr3g0088461 40.952 105 61 1 95 198 22 126 6.63e-19 86.7
Msa0778910 MtrunA17_Chr5g0440761 42.308 104 58 1 95 196 12 115 6.90e-19 85.1
Msa0778910 MtrunA17_Chr7g0269831 45.283 106 57 1 94 198 11 116 7.46e-19 86.7
Msa0778910 MtrunA17_Chr5g0441141 42.308 104 58 1 95 196 12 115 8.17e-19 85.1
Msa0778910 MtrunA17_Chr2g0322521 40.367 109 64 1 90 197 24 132 8.25e-19 87.0
Msa0778910 MtrunA17_Chr2g0294811 48.148 81 42 0 94 174 11 91 2.44e-18 80.1
Msa0778910 MtrunA17_Chr8g0342461 46.250 80 42 1 95 173 12 91 4.86e-18 79.7
Msa0778910 MtrunA17_Chr6g0450101 41.905 105 60 1 95 198 14 118 4.95e-18 81.6
Msa0778910 MtrunA17_Chr8g0342471 45.000 80 43 1 95 173 12 91 1.89e-17 78.2
Msa0778910 MtrunA17_Chr1g0192411 40.187 107 59 2 95 198 12 116 2.30e-17 82.8
Msa0778910 MtrunA17_Chr3g0099141 46.753 77 41 0 95 171 40 116 2.67e-17 77.8
Msa0778910 MtrunA17_Chr1g0154031 39.423 104 62 1 95 197 76 179 3.66e-17 82.0
Msa0778910 MtrunA17_Chr4g0030881 38.182 110 60 2 96 197 8 117 9.38e-17 79.0
Msa0778910 MtrunA17_Chr2g0293911 36.800 125 78 1 75 198 4 128 9.92e-17 80.1
Msa0778910 MtrunA17_Chr4g0053431 38.235 102 61 2 97 197 5 105 2.36e-16 78.2
Msa0778910 MtrunA17_Chr5g0434881 75.000 40 10 0 90 129 2 41 4.47e-16 71.6
Msa0778910 MtrunA17_Chr5g0441131 37.500 104 63 1 95 196 9 112 5.18e-16 75.5
Msa0778910 MtrunA17_Chr5g0425591 46.053 76 41 0 95 170 9 84 5.46e-16 72.8
Msa0778910 MtrunA17_Chr4g0068921 35.772 123 76 2 75 196 6 126 6.58e-16 75.5
Msa0778910 MtrunA17_Chr4g0008551 36.207 116 72 2 97 211 38 152 1.36e-15 77.0
Msa0778910 MtrunA17_Chr1g0194301 36.283 113 71 1 87 198 25 137 4.64e-15 74.7
Msa0778910 MtrunA17_Chr5g0401731 36.275 102 63 2 97 197 15 115 1.15e-14 73.9
Msa0778910 MtrunA17_Chr6g0453751 38.614 101 48 2 70 162 1 95 1.68e-14 69.7
Msa0778910 MtrunA17_Chr7g0238631 37.864 103 62 2 97 198 113 214 1.02e-13 72.0
Msa0778910 MtrunA17_Chr4g0042501 37.255 102 62 2 97 197 105 205 1.73e-13 71.2
Msa0778910 MtrunA17_Chr4g0013361 33.571 140 83 4 90 219 4 143 1.81e-13 70.1
Msa0778910 MtrunA17_Chr1g0157731 35.922 103 64 2 97 198 91 192 2.36e-13 71.2
Msa0778910 MtrunA17_Chr5g0417621 35.922 103 64 2 97 198 134 235 5.23e-13 69.7
Msa0778910 MtrunA17_Chr3g0139671 34.951 103 65 2 97 198 85 186 8.53e-13 69.7
Msa0778910 MtrunA17_Chr8g0334881 37.500 104 63 2 95 196 10 113 1.38e-12 67.8
Msa0778910 MtrunA17_Chr3g0133601 35.922 103 64 2 97 198 37 138 1.49e-12 66.2
Msa0778910 MtrunA17_Chr3g0125801 30.556 144 93 3 88 230 7 144 1.77e-12 67.0
Msa0778910 MtrunA17_Chr7g0254261 36.275 102 63 2 97 197 89 189 2.83e-12 67.0
Msa0778910 MtrunA17_Chr7g0247131 36.538 104 63 2 127 227 10 113 4.19e-12 65.9
Msa0778910 MtrunA17_Chr6g0454921 34.906 106 59 3 97 197 15 115 1.04e-11 63.5
Msa0778910 MtrunA17_Chr6g0460661 35.052 97 61 2 97 192 16 111 1.99e-11 62.0
Msa0778910 MtrunA17_Chr5g0429661 34.545 110 68 3 90 197 115 222 3.10e-11 63.9
Msa0778910 MtrunA17_Chr6g0480581 34.343 99 63 2 97 194 4 101 3.63e-11 62.8
Msa0778910 MtrunA17_Chr3g0117511 35.185 108 66 3 97 202 183 288 4.78e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778910 AT1G66370.1 41.364 220 106 7 90 296 3 212 1.95e-42 148
Msa0778910 AT1G56650.1 48.980 147 73 2 91 235 4 150 3.72e-40 142
Msa0778910 AT1G66380.1 59.459 111 44 1 91 200 4 114 2.56e-39 136
Msa0778910 AT1G66390.1 39.024 246 131 8 91 327 4 239 5.35e-39 139
Msa0778910 AT1G66380.2 72.464 69 19 0 91 159 4 72 5.61e-32 116
Msa0778910 AT5G60890.1 51.887 106 50 1 94 198 11 116 7.19e-30 116
Msa0778910 AT5G07700.1 49.541 109 54 1 92 199 9 117 1.86e-28 113
Msa0778910 AT5G07700.2 49.541 109 54 1 92 199 9 117 1.86e-28 113
Msa0778910 AT3G13540.1 48.598 107 54 1 94 199 22 128 1.90e-28 111
Msa0778910 AT5G07690.1 48.214 112 57 1 91 201 8 119 5.32e-28 112
Msa0778910 AT5G61420.2 47.273 110 57 1 91 199 8 117 2.59e-27 110
Msa0778910 AT5G16770.4 49.533 107 53 1 94 199 11 117 3.15e-27 109
Msa0778910 AT5G16770.3 49.533 107 53 1 94 199 11 117 3.15e-27 109
Msa0778910 AT5G16770.1 49.533 107 53 1 94 199 11 117 4.32e-27 109
Msa0778910 AT5G16770.2 49.533 107 53 1 94 199 11 117 4.32e-27 109
Msa0778910 AT1G18570.1 46.903 113 59 1 90 201 8 120 5.79e-27 109
Msa0778910 AT1G74080.1 47.748 111 57 1 92 201 9 119 8.33e-27 108
Msa0778910 AT2G16720.1 47.170 106 55 1 97 201 14 119 1.21e-26 107
Msa0778910 AT3G02940.2 49.533 107 53 1 94 199 11 117 2.23e-26 107
Msa0778910 AT4G17785.1 49.074 108 54 1 93 199 11 118 2.63e-26 108
Msa0778910 AT4G17785.2 49.074 108 54 1 93 199 11 118 2.70e-26 107
Msa0778910 AT3G02940.1 49.533 107 53 1 94 199 11 117 2.92e-26 107
Msa0778910 AT3G02940.3 49.533 107 53 1 94 199 11 117 2.92e-26 107
Msa0778910 AT4G38620.1 49.038 104 52 1 97 199 14 117 4.92e-26 105
Msa0778910 AT4G05100.1 46.847 111 58 1 90 199 8 118 5.45e-26 106
Msa0778910 AT5G10280.1 47.664 107 55 1 94 199 11 117 5.85e-26 106
Msa0778910 AT4G28110.1 46.729 107 56 1 94 199 11 117 6.34e-26 105
Msa0778910 AT5G65230.1 47.664 107 55 1 94 199 11 117 6.84e-26 105
Msa0778910 AT4G09460.1 40.000 135 73 2 97 223 14 148 9.32e-26 103
Msa0778910 AT1G16490.1 43.443 122 68 1 95 215 14 135 1.09e-25 104
Msa0778910 AT1G08810.1 42.969 128 70 2 94 220 11 136 1.15e-25 104
Msa0778910 AT5G54230.1 48.113 106 54 1 95 199 12 117 1.25e-25 105
Msa0778910 AT1G74430.1 48.624 109 55 1 94 201 11 119 1.40e-25 104
Msa0778910 AT3G30210.1 32.558 215 123 4 94 298 26 228 1.84e-25 103
Msa0778910 AT1G34670.1 48.598 107 54 1 94 199 11 117 1.84e-25 105
Msa0778910 AT3G47600.1 49.057 106 53 1 94 198 11 116 1.98e-25 105
Msa0778910 AT3G48920.1 42.735 117 66 1 96 211 19 135 2.15e-25 103
Msa0778910 AT4G21440.1 47.664 107 55 1 94 199 11 117 2.22e-25 105
Msa0778910 AT1G74650.1 47.321 112 58 1 95 205 12 123 3.06e-25 104
Msa0778910 AT4G34990.1 46.226 106 56 1 97 201 14 119 3.67e-25 103
Msa0778910 AT5G15310.1 45.794 107 57 1 94 199 11 117 4.74e-25 103
Msa0778910 AT5G15310.2 45.794 107 57 1 94 199 11 117 5.15e-25 103
Msa0778910 AT3G23250.1 40.278 144 84 2 94 236 11 153 5.37e-25 102
Msa0778910 AT5G35550.1 44.348 115 62 2 95 208 14 127 5.67e-25 102
Msa0778910 AT5G15310.4 45.794 107 57 1 94 199 11 117 5.88e-25 102
Msa0778910 AT5G62470.2 46.087 115 61 1 94 207 11 125 5.89e-25 103
Msa0778910 AT5G57620.1 39.583 144 85 2 95 236 12 155 6.08e-25 103
Msa0778910 AT4G01680.3 48.571 105 53 1 95 198 12 116 8.03e-25 101
Msa0778910 AT5G56110.1 49.524 105 52 1 95 198 12 116 8.70e-25 103
Msa0778910 AT3G01140.2 46.729 107 56 1 94 199 11 117 1.15e-24 103
Msa0778910 AT3G61250.1 46.729 107 56 1 94 199 11 117 1.23e-24 102
Msa0778910 AT5G23000.1 48.598 107 53 2 95 199 12 118 1.57e-24 102
Msa0778910 AT5G65790.1 42.520 127 71 2 95 219 12 138 1.72e-24 103
Msa0778910 AT4G01680.1 48.571 105 53 1 95 198 12 116 1.83e-24 102
Msa0778910 AT1G22640.1 45.283 106 57 1 97 201 14 119 2.35e-24 100
Msa0778910 AT3G01140.1 46.729 107 56 1 94 199 54 160 2.81e-24 102
Msa0778910 AT3G28910.1 49.057 106 53 1 94 198 11 116 2.91e-24 101
Msa0778910 AT1G06180.1 42.735 117 66 1 94 209 11 127 4.83e-24 99.4
Msa0778910 AT2G31180.1 46.226 106 56 1 94 198 11 116 5.92e-24 99.4
Msa0778910 AT3G13890.2 46.226 106 56 1 95 199 12 117 6.14e-24 101
Msa0778910 AT5G14750.1 39.669 121 72 1 88 207 9 129 7.49e-24 97.8
Msa0778910 AT1G18710.1 46.226 106 56 1 94 198 11 116 8.11e-24 99.4
Msa0778910 AT1G35515.1 45.283 106 57 1 95 199 12 117 1.13e-23 97.4
Msa0778910 AT5G62470.1 46.087 115 60 2 94 207 11 124 1.84e-23 100
Msa0778910 AT2G36890.1 46.729 107 55 2 95 199 12 118 2.38e-23 98.6
Msa0778910 AT2G36890.2 46.729 107 55 2 95 199 53 159 3.04e-23 99.4
Msa0778910 AT3G28470.1 48.485 99 50 1 95 192 12 110 3.32e-23 98.6
Msa0778910 AT3G49690.1 47.273 110 56 2 95 202 12 121 3.67e-23 98.6
Msa0778910 AT3G62610.1 47.170 106 55 1 94 198 11 116 4.27e-23 99.0
Msa0778910 AT1G57560.2 45.370 108 58 1 95 201 12 119 6.51e-23 97.1
Msa0778910 AT1G57560.1 33.168 202 114 5 95 279 12 209 7.47e-23 97.8
Msa0778910 AT5G26660.1 46.667 105 55 1 95 198 12 116 8.18e-23 98.2
Msa0778910 AT1G79180.1 43.810 105 58 1 95 198 14 118 8.35e-23 97.1
Msa0778910 AT5G62320.1 33.714 175 107 3 94 259 12 186 8.67e-23 95.9
Msa0778910 AT1G56160.1 45.794 107 57 1 95 200 14 120 9.44e-23 97.1
Msa0778910 AT4G25560.1 36.257 171 104 3 96 264 11 178 9.74e-23 96.7
Msa0778910 AT5G40330.1 43.269 104 58 1 96 198 13 116 1.46e-22 94.7
Msa0778910 AT5G52600.1 39.844 128 70 2 90 216 7 128 1.61e-22 94.0
Msa0778910 AT4G37780.1 45.045 111 59 2 94 202 11 121 1.64e-22 96.7
Msa0778910 AT3G27920.1 41.905 105 60 1 96 199 15 119 3.42e-22 94.0
Msa0778910 AT1G09540.1 44.762 105 57 1 95 198 12 116 4.88e-22 96.3
Msa0778910 AT4G22680.1 44.860 107 58 1 94 199 11 117 7.60e-22 94.0
Msa0778910 AT3G12820.1 43.396 106 59 1 95 199 14 119 1.11e-21 92.8
Msa0778910 AT5G49330.1 44.340 106 58 1 94 198 11 116 1.69e-21 94.4
Msa0778910 AT2G47460.1 43.396 106 59 1 94 198 11 116 2.07e-21 94.4
Msa0778910 AT2G32460.1 38.710 124 71 2 75 197 2 121 2.18e-21 95.5
Msa0778910 AT4G01680.2 43.590 117 53 2 95 198 12 128 2.89e-21 93.6
Msa0778910 AT1G25340.1 43.750 112 62 1 88 198 11 122 4.82e-21 92.0
Msa0778910 AT4G13480.1 44.915 118 63 2 96 212 7 123 5.19e-21 91.7
Msa0778910 AT3G12720.1 41.509 106 61 1 95 199 22 127 5.43e-21 92.4
Msa0778910 AT3G13890.1 42.609 115 56 2 95 199 12 126 5.57e-21 93.2
Msa0778910 AT1G63910.1 43.810 105 58 1 95 198 12 116 5.63e-21 93.2
Msa0778910 AT2G32460.2 40.741 108 63 1 91 197 2 109 8.19e-21 93.6
Msa0778910 AT3G24310.1 41.600 125 69 2 94 217 17 138 1.01e-20 90.9
Msa0778910 AT5G12870.1 41.905 105 60 1 95 198 18 122 2.63e-20 89.7
Msa0778910 AT5G14340.1 44.340 106 58 1 94 198 23 128 3.33e-20 89.4
Msa0778910 AT5G52260.1 44.762 105 57 1 96 199 13 117 3.73e-20 89.4
Msa0778910 AT5G59780.3 42.593 108 61 1 96 202 9 116 7.17e-20 87.8
Msa0778910 AT3G46130.1 41.818 110 63 1 94 202 8 117 7.24e-20 88.2
Msa0778910 AT3G08500.1 41.905 105 60 1 95 198 30 134 9.62e-20 89.4
Msa0778910 AT1G48000.1 43.689 103 57 1 95 196 32 134 1.05e-19 87.4
Msa0778910 AT4G26930.1 39.806 103 61 1 95 196 19 121 3.57e-19 88.2
Msa0778910 AT1G66230.1 43.396 106 59 1 94 198 11 116 3.74e-19 86.7
Msa0778910 AT5G55020.1 41.748 103 59 1 95 196 26 128 4.88e-19 88.6
Msa0778910 AT3G53200.1 43.269 104 58 1 95 197 9 112 6.27e-19 85.1
Msa0778910 AT5G40350.1 40.000 120 71 1 95 213 17 136 7.71e-19 84.3
Msa0778910 AT5G06100.1 38.318 107 65 1 92 197 29 135 7.98e-19 87.8
Msa0778910 AT5G06100.5 38.318 107 65 1 92 197 29 135 9.10e-19 87.8
Msa0778910 AT5G06100.2 38.318 107 65 1 92 197 29 135 9.10e-19 87.8
Msa0778910 AT5G06100.3 38.318 107 65 1 92 197 29 135 9.10e-19 87.8
Msa0778910 AT5G06100.4 38.318 107 65 1 92 197 29 135 9.10e-19 87.8
Msa0778910 AT1G66380.3 54.667 75 33 1 127 200 7 81 1.50e-18 80.5
Msa0778910 AT4G12350.1 42.453 106 60 1 95 199 12 117 1.69e-18 84.7
Msa0778910 AT5G16600.1 42.453 106 60 1 94 198 11 116 2.29e-18 85.1
Msa0778910 AT3G11440.2 39.669 121 67 3 81 197 26 144 3.09e-18 85.9
Msa0778910 AT3G11440.3 39.669 121 67 3 81 197 26 144 3.64e-18 86.3
Msa0778910 AT3G11440.4 39.669 121 67 3 81 197 26 144 3.64e-18 86.3
Msa0778910 AT3G11440.1 39.669 121 67 3 81 197 26 144 3.64e-18 86.3
Msa0778910 AT2G47190.1 38.393 112 68 1 88 198 13 124 4.77e-18 83.6
Msa0778910 AT2G26960.1 38.532 109 66 1 89 196 14 122 4.78e-18 85.1
Msa0778910 AT1G25340.2 41.964 112 59 2 88 198 11 117 6.55e-18 83.2
Msa0778910 AT1G68320.1 42.857 105 59 1 95 198 19 123 7.33e-18 83.2
Msa0778910 AT1G25340.3 41.964 112 59 2 88 198 11 117 7.56e-18 83.6
Msa0778910 AT3G01530.1 40.952 105 61 1 95 198 25 129 8.17e-18 81.3
Msa0778910 AT3G27810.1 40.952 105 61 1 95 198 20 124 2.70e-17 80.5
Msa0778910 AT1G79180.2 32.609 138 59 2 95 198 14 151 5.80e-17 81.3
Msa0778910 AT3G55730.1 41.509 106 60 2 93 197 52 156 7.53e-16 78.6
Msa0778910 AT2G39880.1 39.640 111 65 2 88 197 41 150 2.09e-15 77.0
Msa0778910 AT3G50060.1 34.375 128 74 3 97 215 6 132 3.04e-15 75.9
Msa0778910 AT1G69560.1 31.655 139 87 4 94 231 104 235 3.04e-15 76.3
Msa0778910 AT1G69560.2 31.655 139 87 4 94 231 120 251 3.66e-15 76.3
Msa0778910 AT5G49620.1 39.286 112 67 1 86 196 17 128 6.92e-15 74.7
Msa0778910 AT5G67300.1 39.216 102 60 2 97 197 6 106 1.19e-14 73.9
Msa0778910 AT5G11510.3 37.864 103 62 2 97 198 81 182 1.42e-14 75.5
Msa0778910 AT5G11510.1 37.864 103 62 2 97 198 81 182 1.42e-14 75.5
Msa0778910 AT5G11510.4 37.864 103 62 2 97 198 81 182 1.42e-14 75.5
Msa0778910 AT3G09230.1 36.752 117 69 3 87 199 42 157 1.98e-14 74.3
Msa0778910 AT3G06490.1 39.048 105 63 1 95 198 19 123 2.08e-14 73.6
Msa0778910 AT5G11510.2 37.864 103 62 2 97 198 81 182 2.58e-14 74.7
Msa0778910 AT5G11510.5 37.864 103 62 2 97 198 81 182 2.64e-14 74.7
Msa0778910 AT4G37260.1 37.255 102 62 2 97 197 13 113 3.56e-14 72.8
Msa0778910 AT5G49620.2 33.858 127 67 2 86 196 17 142 4.98e-14 72.4
Msa0778910 AT5G14750.3 41.379 87 47 2 122 207 12 95 9.67e-14 68.9
Msa0778910 AT3G47600.2 50.000 72 35 1 128 198 39 110 1.20e-13 71.2
Msa0778910 AT3G09370.2 35.294 102 64 2 97 197 135 235 1.42e-13 72.0
Msa0778910 AT3G09370.1 35.294 102 64 2 97 197 130 230 1.43e-13 72.0
Msa0778910 AT5G02320.3 34.951 103 65 2 97 198 67 168 1.66e-13 71.6
Msa0778910 AT3G09370.3 35.294 102 64 2 97 197 143 243 1.71e-13 72.0
Msa0778910 AT5G35550.2 45.122 82 43 2 128 208 50 130 1.77e-13 70.1
Msa0778910 AT5G02320.1 34.951 103 65 2 97 198 127 228 1.85e-13 71.6
Msa0778910 AT5G02320.2 34.951 103 65 2 97 198 127 228 1.85e-13 71.6
Msa0778910 AT2G23290.1 37.255 102 62 2 97 197 13 113 1.98e-13 70.5
Msa0778910 AT2G26950.1 35.455 110 63 3 97 200 18 125 2.63e-13 70.9
Msa0778910 AT1G26780.1 36.275 102 63 2 97 197 98 198 4.21e-13 69.3
Msa0778910 AT1G26780.2 36.275 102 63 2 97 197 98 198 5.59e-13 69.7
Msa0778910 AT3G53200.2 46.753 77 40 1 122 197 3 79 8.54e-13 67.0
Msa0778910 AT5G59780.2 44.872 78 42 1 126 202 18 95 1.61e-12 66.6
Msa0778910 AT3G46130.4 44.872 78 42 1 126 202 18 95 3.57e-12 65.9
Msa0778910 AT5G26660.2 44.595 74 40 1 126 198 12 85 3.94e-12 67.0
Msa0778910 AT4G33450.1 29.545 132 85 3 96 226 18 142 5.10e-12 65.9
Msa0778910 AT3G29020.1 34.545 110 68 3 91 198 59 166 5.47e-12 65.5
Msa0778910 AT3G60460.1 36.538 104 64 2 95 196 11 114 5.68e-12 66.2
Msa0778910 AT5G17800.1 31.250 112 75 2 97 207 93 203 6.40e-12 66.2
Msa0778910 AT3G29020.2 34.545 110 68 3 91 198 61 168 6.85e-12 65.9
Msa0778910 AT1G73410.1 34.579 107 60 3 97 198 6 107 7.10e-12 65.1
Msa0778910 AT3G12820.2 44.286 70 38 1 131 199 2 71 7.60e-12 63.9
Msa0778910 AT5G11050.1 29.371 143 96 3 93 234 101 239 7.71e-12 66.6
Msa0778910 AT1G17950.1 32.353 102 67 2 97 197 5 105 7.86e-12 65.1
Msa0778910 AT3G46130.3 44.156 77 42 1 127 202 9 85 8.08e-12 64.7
Msa0778910 AT1G73410.2 34.579 107 60 3 97 198 6 107 9.44e-12 63.9
Msa0778910 AT2G37630.1 34.483 116 67 3 100 212 7 116 1.11e-11 65.9
Msa0778910 AT5G58850.1 30.769 117 79 2 91 206 99 214 2.57e-11 65.1
Msa0778910 AT4G32730.1 33.010 103 67 2 97 198 87 188 3.18e-11 65.1
Msa0778910 AT4G32730.5 33.010 103 67 2 97 198 87 188 3.48e-11 65.1
Msa0778910 AT4G32730.4 33.010 103 67 2 97 198 87 188 3.48e-11 65.1
Msa0778910 AT4G32730.3 33.010 103 67 2 97 198 87 188 3.48e-11 65.1
Msa0778910 AT4G32730.2 33.010 103 67 2 97 198 87 188 3.48e-11 65.1
Msa0778910 AT4G18770.1 36.036 111 61 3 97 202 217 322 7.54e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTGCATCACCAATATT+TGG 0.125357 5_2:+59891395 None:intergenic
TTGCTTTCAGTTCCACCTTC+TGG 0.244476 5_2:+59893518 None:intergenic
TTTAAGGCTACACAAACTTC+TGG 0.259530 5_2:-59892118 Msa0778910:CDS
ATTGTTTAAGTGAATTTAAA+TGG 0.262599 5_2:-59891142 Msa0778910:three_prime_UTR
CTTTGTGATATCAATTCATT+TGG 0.268320 5_2:-59891191 Msa0778910:CDS
CTAATGATGTGAAGAATTAT+TGG 0.279813 5_2:-59891655 Msa0778910:CDS
AATTCATTTGGGGTCTCTAA+TGG 0.298135 5_2:-59891179 Msa0778910:CDS
ATCTTGAAATCATAATCTTT+TGG 0.298441 5_2:+59893719 None:intergenic
GATAGAAGTAATGACAAAAT+TGG 0.315843 5_2:-59891311 Msa0778910:CDS
CATTAGTAAACTTTGTTTCC+TGG 0.317421 5_2:+59893657 None:intergenic
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5_2:-59892415 Msa0778910:CDS
ACGAAACTTACTTAATTTAG+TGG 0.333378 5_2:+59891116 None:intergenic
CGATCGACTGTTTGGTGAAC+CGG 0.337629 5_2:+59893591 None:intergenic
TTGATTGCTGCAAGGCTTGT+AGG 0.349454 5_2:-59891682 Msa0778910:CDS
TTCCTGGATTACTTTATCAT+TGG 0.359750 5_2:+59893673 None:intergenic
CTTTATCAACTCATTCACTA+TGG 0.363243 5_2:-59891514 Msa0778910:CDS
AAGACTATACTCCCAAATAT+TGG 0.386984 5_2:-59891407 Msa0778910:CDS
AAGGCTTGTATTAACAAGTA+TGG 0.389039 5_2:-59892428 Msa0778910:CDS
TACACAAACTTCTGGGGAAC+AGG 0.401830 5_2:-59892110 Msa0778910:intron
TTTGTGATATCAATTCATTT+GGG 0.410400 5_2:-59891190 Msa0778910:CDS
AAGTTTCGTGTAAATTTAGT+TGG 0.412050 5_2:-59891102 Msa0778910:three_prime_UTR
TTAAGGCTACACAAACTTCT+GGG 0.414779 5_2:-59892117 Msa0778910:CDS
TAATGGCTCCAGTGCCGGTT+GGG 0.416587 5_2:-59891222 Msa0778910:CDS
TGCATTGGTCATTACAGCTC+TGG 0.420682 5_2:+59893541 None:intergenic
ACATCCTTCGATCGACTGTT+TGG 0.424582 5_2:+59893583 None:intergenic
AGTTCCACCTTCTGGTGCAT+TGG 0.433231 5_2:+59893526 None:intergenic
ATTGTGCATCACCAATATTT+GGG 0.451296 5_2:+59891396 None:intergenic
AAAGATTATGATTTCAAGAT+CGG 0.457662 5_2:-59893716 Msa0778910:CDS
GTTGAAATCCCAACCGGCAC+TGG 0.461369 5_2:+59891214 None:intergenic
ATAGTCTTGTCACACTCTCT+TGG 0.461855 5_2:+59891422 None:intergenic
CGAAACTTACTTAATTTAGT+GGG 0.478593 5_2:+59891117 None:intergenic
ACTCAATTTCTTTGCAAATG+AGG 0.479483 5_2:-59893489 Msa0778910:CDS
TTCCAATGATAAAGTAATCC+AGG 0.486887 5_2:-59893675 Msa0778910:CDS
TTTACTAATGGCTCCAGTGC+CGG 0.487763 5_2:-59891227 Msa0778910:CDS
GTTGATAAAGTTCGAGGTCG+AGG 0.499120 5_2:+59891527 None:intergenic
ACAAGAGGAAAATTTCACTT+TGG 0.500548 5_2:-59891273 Msa0778910:CDS
GCAAAACTAGTGGGTGAAGA+TGG 0.501577 5_2:-59891452 Msa0778910:CDS
CTCTTGCTCTTTATTACAAG+AGG 0.514599 5_2:-59891288 Msa0778910:CDS
TCTTTGCAAATGAGGCAGCC+AGG 0.517329 5_2:-59893481 Msa0778910:intron
CATTTAGTTCCTAAAAGAGC+AGG 0.524795 5_2:-59892392 Msa0778910:intron
CTAATGGCTCCAGTGCCGGT+TGG 0.526179 5_2:-59891223 Msa0778910:CDS
AAGACCAGAGGCGTGAGAAA+AGG 0.526806 5_2:-59892482 Msa0778910:intron
AAAAGGTGCATGGACATATG+AGG 0.529512 5_2:-59892465 Msa0778910:CDS
ACAAAGGTTGAAATCCCAAC+CGG 0.531128 5_2:+59891208 None:intergenic
TCCCACCACATAGTAGAAAG+TGG 0.533859 5_2:+59891356 None:intergenic
GATCGACTGTTTGGTGAACC+GGG 0.535215 5_2:+59893592 None:intergenic
ATCTCCCACTTTCTACTATG+TGG 0.539694 5_2:-59891361 Msa0778910:CDS
GAATGAGTTGATAAAGTTCG+AGG 0.542787 5_2:+59891521 None:intergenic
GCCGGAAAAGTTGTAGATTG+AGG 0.555853 5_2:-59892207 Msa0778910:CDS
TTCACCAAACAGTCGATCGA+AGG 0.556540 5_2:-59893587 Msa0778910:CDS
TCCCACTTTCTACTATGTGG+TGG 0.561350 5_2:-59891358 Msa0778910:CDS
TGTATTAACAAGTATGGTGA+AGG 0.564505 5_2:-59892422 Msa0778910:CDS
TTGTGATATCAATTCATTTG+GGG 0.570532 5_2:-59891189 Msa0778910:CDS
TAAGGCTACACAAACTTCTG+GGG 0.578570 5_2:-59892116 Msa0778910:CDS
CCCACTTTCTACTATGTGGT+GGG 0.579986 5_2:-59891357 Msa0778910:CDS
ATGCAGGTTTGAATAGATGC+CGG 0.589011 5_2:-59892225 Msa0778910:intron
TGCTAGTGCAGCAAAACTAG+TGG 0.611174 5_2:-59891462 Msa0778910:CDS
ATGACCAATGCACCAGAAGG+TGG 0.612687 5_2:-59893530 Msa0778910:CDS
GAGGCGTGAGAAAAGGTGCA+TGG 0.616816 5_2:-59892475 Msa0778910:CDS
TGAGGAGGACAATCAACTCA+AGG 0.625964 5_2:-59892447 Msa0778910:CDS
GAAACAAGACTATCTTTACC+CGG 0.627526 5_2:-59893610 Msa0778910:CDS
GAAAAGTTGTAGATTGAGGT+GGG 0.628302 5_2:-59892203 Msa0778910:CDS
CCCACCACATAGTAGAAAGT+GGG 0.628761 5_2:+59891357 None:intergenic
GCTAGTGCAGCAAAACTAGT+GGG 0.641701 5_2:-59891461 Msa0778910:CDS
GATGGTCATTGATTGCTGCA+AGG 0.644969 5_2:-59891690 Msa0778910:CDS
GTAATGACCAATGCACCAGA+AGG 0.648147 5_2:-59893533 Msa0778910:CDS
GGTGATGCACAATCATGTGT+TGG 0.649487 5_2:-59891386 Msa0778910:CDS
GGAAAAGTTGTAGATTGAGG+TGG 0.655059 5_2:-59892204 Msa0778910:CDS
CAAATGAATTGATATCACAA+AGG 0.673539 5_2:+59891192 None:intergenic
AGGTGCATGGACATATGAGG+AGG 0.682411 5_2:-59892462 Msa0778910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAATTAATTAACTCT+AGG + chr5_2:59892777-59892796 None:intergenic 10.0%
!! TAGATAAATCTCATTAAAAT+AGG - chr5_2:59891531-59891550 Msa0778910:CDS 15.0%
!!! TTTTTTTTTTGAAAGAATGA+TGG + chr5_2:59891882-59891901 None:intergenic 15.0%
!!! GTTGAATATTTTTTATAGTT+GGG + chr5_2:59891983-59892002 None:intergenic 15.0%
!!! TTTTTGTTTCTTTCTTTTTT+GGG - chr5_2:59892113-59892132 Msa0778910:CDS 15.0%
!!! ATATTTAGAATATATAAGCA+TGG + chr5_2:59892492-59892511 None:intergenic 15.0%
!! ATTTATTAAACTATATATGC+AGG - chr5_2:59892533-59892552 Msa0778910:intron 15.0%
!!! TGAAATTGATATGATTTTTA+AGG - chr5_2:59892640-59892659 Msa0778910:intron 15.0%
!!! AATTGTTATTTGTACATATT+AGG - chr5_2:59892713-59892732 Msa0778910:intron 15.0%
!!! ATTGTTATTTGTACATATTA+GGG - chr5_2:59892714-59892733 Msa0778910:intron 15.0%
!! AGTATATGTTAAAAAAAGTT+TGG - chr5_2:59892921-59892940 Msa0778910:intron 15.0%
!! AGCTAAAATATACTATAAAT+TGG + chr5_2:59893033-59893052 None:intergenic 15.0%
!! ATTGTTTAAGTGAATTTAAA+TGG - chr5_2:59893632-59893651 Msa0778910:CDS 15.0%
!!! ATCTTGAAATCATAATCTTT+TGG + chr5_2:59891058-59891077 None:intergenic 20.0%
!! AAAGATTATGATTTCAAGAT+CGG - chr5_2:59891058-59891077 Msa0778910:three_prime_UTR 20.0%
!!! AAAATTAACTTGACTATGAT+GGG + chr5_2:59891911-59891930 None:intergenic 20.0%
!!! AAAAATTAACTTGACTATGA+TGG + chr5_2:59891912-59891931 None:intergenic 20.0%
!!! GTGTTCATTATTTGATTTAA+TGG + chr5_2:59891938-59891957 None:intergenic 20.0%
!!! GGTTGAATATTTTTTATAGT+TGG + chr5_2:59891984-59892003 None:intergenic 20.0%
!! GAAAAATTTGATTGTAAGTT+GGG + chr5_2:59892005-59892024 None:intergenic 20.0%
!! AGAAAAATTTGATTGTAAGT+TGG + chr5_2:59892006-59892025 None:intergenic 20.0%
!! AAAAGAAAGAAACAAAAAGA+GGG + chr5_2:59892111-59892130 None:intergenic 20.0%
!! AAAAAGAAAGAAACAAAAAG+AGG + chr5_2:59892112-59892131 None:intergenic 20.0%
!!! CTTTTTGTTTCTTTCTTTTT+TGG - chr5_2:59892112-59892131 Msa0778910:CDS 20.0%
!!! TTGTTATTTGTACATATTAG+GGG - chr5_2:59892715-59892734 Msa0778910:intron 20.0%
!! TTAAGAAATTCAATCATCTA+CGG + chr5_2:59892860-59892879 None:intergenic 20.0%
!! ATCTATAATATGTGTATAGA+TGG - chr5_2:59893066-59893085 Msa0778910:intron 20.0%
!!! TCTTCATTTTCTTCTTTTTT+TGG + chr5_2:59893172-59893191 None:intergenic 20.0%
!! TTTGTGATATCAATTCATTT+GGG - chr5_2:59893584-59893603 Msa0778910:CDS 20.0%
! TGCATAATGTCATAAAATGA+AGG - chr5_2:59891372-59891391 Msa0778910:CDS 25.0%
!! AAGTGAGTAGTATCTAAAAT+GGG + chr5_2:59891497-59891516 None:intergenic 25.0%
! AAAGACAGGCATTTATAATA+AGG - chr5_2:59891828-59891847 Msa0778910:intron 25.0%
! AAGACAGGCATTTATAATAA+GGG - chr5_2:59891829-59891848 Msa0778910:intron 25.0%
!!! TTTTTTATAGTTGGGTTTGA+GGG + chr5_2:59891975-59891994 None:intergenic 25.0%
!!! ATTTTTTATAGTTGGGTTTG+AGG + chr5_2:59891976-59891995 None:intergenic 25.0%
! TTGACTGTGTTAGTAAAAAA+AGG + chr5_2:59892050-59892069 None:intergenic 25.0%
!! ATTTCCTCTGAAAATAAAGA+GGG + chr5_2:59892086-59892105 None:intergenic 25.0%
!! AATTTCCTCTGAAAATAAAG+AGG + chr5_2:59892087-59892106 None:intergenic 25.0%
!!! ATTATGCCTTTATTTTTCTG+TGG - chr5_2:59892229-59892248 Msa0778910:intron 25.0%
! ATTTGTCCACAGAAAAATAA+AGG + chr5_2:59892238-59892257 None:intergenic 25.0%
!! TATTTTTCTGTGGACAAATA+AGG - chr5_2:59892239-59892258 Msa0778910:intron 25.0%
! CTACTAGATCTAAATTAACA+AGG + chr5_2:59892745-59892764 None:intergenic 25.0%
! TATGTTAAAAAAAGTTTGGC+CGG - chr5_2:59892925-59892944 Msa0778910:intron 25.0%
!! TTGGAAGCATAATTAAACTA+AGG + chr5_2:59893014-59893033 None:intergenic 25.0%
! CTAATGATGTGAAGAATTAT+TGG - chr5_2:59893119-59893138 Msa0778910:intron 25.0%
! GATAGAAGTAATGACAAAAT+TGG - chr5_2:59893463-59893482 Msa0778910:intron 25.0%
! CAAATGAATTGATATCACAA+AGG + chr5_2:59893585-59893604 None:intergenic 25.0%
! CTTTGTGATATCAATTCATT+TGG - chr5_2:59893583-59893602 Msa0778910:CDS 25.0%
! TTGTGATATCAATTCATTTG+GGG - chr5_2:59893585-59893604 Msa0778910:CDS 25.0%
! CGAAACTTACTTAATTTAGT+GGG + chr5_2:59893660-59893679 None:intergenic 25.0%
! ACGAAACTTACTTAATTTAG+TGG + chr5_2:59893661-59893680 None:intergenic 25.0%
! AAGTTTCGTGTAAATTTAGT+TGG - chr5_2:59893672-59893691 Msa0778910:CDS 25.0%
TTCCAATGATAAAGTAATCC+AGG - chr5_2:59891099-59891118 Msa0778910:three_prime_UTR 30.0%
TTCCTGGATTACTTTATCAT+TGG + chr5_2:59891104-59891123 None:intergenic 30.0%
! CATTAGTAAACTTTGTTTCC+TGG + chr5_2:59891120-59891139 None:intergenic 30.0%
ACTCAATTTCTTTGCAAATG+AGG - chr5_2:59891285-59891304 Msa0778910:CDS 30.0%
CAAGTGAGTAGTATCTAAAA+TGG + chr5_2:59891498-59891517 None:intergenic 30.0%
! CATTTTAGATACTACTCACT+TGG - chr5_2:59891496-59891515 Msa0778910:CDS 30.0%
ATAGAAGAAGCAATTGACAA+CGG - chr5_2:59891568-59891587 Msa0778910:CDS 30.0%
! ATAAATGCCTGTCTTTGAAA+GGG + chr5_2:59891824-59891843 None:intergenic 30.0%
TATAAATGCCTGTCTTTGAA+AGG + chr5_2:59891825-59891844 None:intergenic 30.0%
AGACAGGCATTTATAATAAG+GGG - chr5_2:59891830-59891849 Msa0778910:intron 30.0%
!!! ATTACCCTCTTTATTTTCAG+AGG - chr5_2:59892079-59892098 Msa0778910:intron 30.0%
AAGGCTTGTATTAACAAGTA+TGG - chr5_2:59892346-59892365 Msa0778910:intron 30.0%
TGTATTAACAAGTATGGTGA+AGG - chr5_2:59892352-59892371 Msa0778910:intron 30.0%
!! AAAGTTTCTCTTTTGATTGC+GGG + chr5_2:59892611-59892630 None:intergenic 30.0%
!! GAAAGTTTCTCTTTTGATTG+CGG + chr5_2:59892612-59892631 None:intergenic 30.0%
CTTTATCAACTCATTCACTA+TGG - chr5_2:59893260-59893279 Msa0778910:intron 30.0%
AAGACTATACTCCCAAATAT+TGG - chr5_2:59893367-59893386 Msa0778910:intron 30.0%
ATTGTGCATCACCAATATTT+GGG + chr5_2:59893381-59893400 None:intergenic 30.0%
ACAAGAGGAAAATTTCACTT+TGG - chr5_2:59893501-59893520 Msa0778910:CDS 30.0%
!!! GTGGAGGAATTTTTTACTAA+TGG - chr5_2:59893535-59893554 Msa0778910:CDS 30.0%
GAAACAAGACTATCTTTACC+CGG - chr5_2:59891164-59891183 Msa0778910:exon 35.0%
GAAACATATTTCGATTGACC+TGG - chr5_2:59891594-59891613 Msa0778910:CDS 35.0%
GACAGGCATTTATAATAAGG+GGG - chr5_2:59891831-59891850 Msa0778910:intron 35.0%
GTCTAAATAGCAAGTGCATA+TGG - chr5_2:59892267-59892286 Msa0778910:intron 35.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_2:59892359-59892378 Msa0778910:intron 35.0%
! CATTTAGTTCCTAAAAGAGC+AGG - chr5_2:59892382-59892401 Msa0778910:intron 35.0%
! ATACAAGTACCTGCTCTTTT+AGG + chr5_2:59892394-59892413 None:intergenic 35.0%
! ACCTCAATCTACAACTTTTC+CGG + chr5_2:59892571-59892590 None:intergenic 35.0%
GAAAAGTTGTAGATTGAGGT+GGG - chr5_2:59892571-59892590 Msa0778910:intron 35.0%
!! AAGTTTCTCTTTTGATTGCG+GGG + chr5_2:59892610-59892629 None:intergenic 35.0%
! TTTAAGGCTACACAAACTTC+TGG - chr5_2:59892656-59892675 Msa0778910:intron 35.0%
TTAAGGCTACACAAACTTCT+GGG - chr5_2:59892657-59892676 Msa0778910:intron 35.0%
TGTGTAATTGTAGATAGCTC+CGG + chr5_2:59892947-59892966 None:intergenic 35.0%
GAGCTATCTACAATTACACA+TGG - chr5_2:59892947-59892966 Msa0778910:intron 35.0%
!! GAATGAGTTGATAAAGTTCG+AGG + chr5_2:59893256-59893275 None:intergenic 35.0%
GATTGTGCATCACCAATATT+TGG + chr5_2:59893382-59893401 None:intergenic 35.0%
CTCTTGCTCTTTATTACAAG+AGG - chr5_2:59893486-59893505 Msa0778910:CDS 35.0%
!!! CACTTTGGAGTTTTCAAATG+TGG - chr5_2:59893516-59893535 Msa0778910:CDS 35.0%
!! TTTGGAGTTTTCAAATGTGG+AGG - chr5_2:59893519-59893538 Msa0778910:CDS 35.0%
! AATTCATTTGGGGTCTCTAA+TGG - chr5_2:59893595-59893614 Msa0778910:CDS 35.0%
CTCGATCACATTCAATGCTT+TGG - chr5_2:59891467-59891486 Msa0778910:CDS 40.0%
ACATATTTCGATTGACCTGG+TGG - chr5_2:59891597-59891616 Msa0778910:CDS 40.0%
TTGCAAACCCTTTCAAAGAC+AGG - chr5_2:59891814-59891833 Msa0778910:intron 40.0%
TGTGTGTGTGTGTGTTATGA+GGG - chr5_2:59892200-59892219 Msa0778910:CDS 40.0%
! AAAAGGTGCATGGACATATG+AGG - chr5_2:59892309-59892328 Msa0778910:intron 40.0%
ATGCAGGTTTGAATAGATGC+CGG - chr5_2:59892549-59892568 Msa0778910:intron 40.0%
GGAAAAGTTGTAGATTGAGG+TGG - chr5_2:59892570-59892589 Msa0778910:intron 40.0%
TAAGGCTACACAAACTTCTG+GGG - chr5_2:59892658-59892677 Msa0778910:intron 40.0%
TATGCTTCCGAATACCAACA+CGG - chr5_2:59892822-59892841 Msa0778910:intron 40.0%
!! ATAGTCTTGTCACACTCTCT+TGG + chr5_2:59893355-59893374 None:intergenic 40.0%
ATCTCCCACTTTCTACTATG+TGG - chr5_2:59893413-59893432 Msa0778910:intron 40.0%
ACAAAGGTTGAAATCCCAAC+CGG + chr5_2:59893569-59893588 None:intergenic 40.0%
TTCACCAAACAGTCGATCGA+AGG - chr5_2:59891187-59891206 Msa0778910:CDS 45.0%
ACATCCTTCGATCGACTGTT+TGG + chr5_2:59891194-59891213 None:intergenic 45.0%
! TGCATTGGTCATTACAGCTC+TGG + chr5_2:59891236-59891255 None:intergenic 45.0%
GTAATGACCAATGCACCAGA+AGG - chr5_2:59891241-59891260 Msa0778910:CDS 45.0%
TTGCTTTCAGTTCCACCTTC+TGG + chr5_2:59891259-59891278 None:intergenic 45.0%
CTGGAAGAAAGGGTGACTTT+AGG - chr5_2:59891320-59891339 Msa0778910:CDS 45.0%
AATAAGGGGGAGTTAGCATG+AGG - chr5_2:59891844-59891863 Msa0778910:intron 45.0%
GTGTGTGTGTGTGTGTTATG+AGG - chr5_2:59892199-59892218 Msa0778910:CDS 45.0%
GTGCATATGGAAAAGACCAG+AGG - chr5_2:59892280-59892299 Msa0778910:intron 45.0%
TGAGGAGGACAATCAACTCA+AGG - chr5_2:59892327-59892346 Msa0778910:intron 45.0%
GCCGGAAAAGTTGTAGATTG+AGG - chr5_2:59892567-59892586 Msa0778910:intron 45.0%
! TACACAAACTTCTGGGGAAC+AGG - chr5_2:59892664-59892683 Msa0778910:intron 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_2:59893084-59893103 Msa0778910:intron 45.0%
TTGATTGCTGCAAGGCTTGT+AGG - chr5_2:59893092-59893111 Msa0778910:intron 45.0%
! GTTGATAAAGTTCGAGGTCG+AGG + chr5_2:59893250-59893269 None:intergenic 45.0%
TGCTAGTGCAGCAAAACTAG+TGG - chr5_2:59893312-59893331 Msa0778910:intron 45.0%
GCTAGTGCAGCAAAACTAGT+GGG - chr5_2:59893313-59893332 Msa0778910:intron 45.0%
! GCAAAACTAGTGGGTGAAGA+TGG - chr5_2:59893322-59893341 Msa0778910:intron 45.0%
GGTGATGCACAATCATGTGT+TGG - chr5_2:59893388-59893407 Msa0778910:intron 45.0%
TCCCACTTTCTACTATGTGG+TGG - chr5_2:59893416-59893435 Msa0778910:intron 45.0%
CCCACCACATAGTAGAAAGT+GGG + chr5_2:59893420-59893439 None:intergenic 45.0%
CCCACTTTCTACTATGTGGT+GGG - chr5_2:59893417-59893436 Msa0778910:intron 45.0%
TCCCACCACATAGTAGAAAG+TGG + chr5_2:59893421-59893440 None:intergenic 45.0%
TTTACTAATGGCTCCAGTGC+CGG - chr5_2:59893547-59893566 Msa0778910:CDS 45.0%
! GATCGACTGTTTGGTGAACC+GGG + chr5_2:59891185-59891204 None:intergenic 50.0%
! CGATCGACTGTTTGGTGAAC+CGG + chr5_2:59891186-59891205 None:intergenic 50.0%
ATGACCAATGCACCAGAAGG+TGG - chr5_2:59891244-59891263 Msa0778910:CDS 50.0%
AGTTCCACCTTCTGGTGCAT+TGG + chr5_2:59891251-59891270 None:intergenic 50.0%
TCTTTGCAAATGAGGCAGCC+AGG - chr5_2:59891293-59891312 Msa0778910:CDS 50.0%
AGCCAGGTAAGCTGGAAGAA+AGG - chr5_2:59891309-59891328 Msa0778910:CDS 50.0%
GCCAGGTAAGCTGGAAGAAA+GGG - chr5_2:59891310-59891329 Msa0778910:CDS 50.0%
ACCCTTTCTTCCAGCTTACC+TGG + chr5_2:59891314-59891333 None:intergenic 50.0%
! TTCGATTGACCTGGTGGTGT+TGG - chr5_2:59891603-59891622 Msa0778910:CDS 50.0%
!! GTGGTGTTGGCTTGAGAACT+TGG - chr5_2:59891616-59891635 Msa0778910:CDS 50.0%
! AAGACCAGAGGCGTGAGAAA+AGG - chr5_2:59892292-59892311 Msa0778910:intron 50.0%
AGGTGCATGGACATATGAGG+AGG - chr5_2:59892312-59892331 Msa0778910:intron 50.0%
TTCCGAATACCAACACGGTG+TGG - chr5_2:59892827-59892846 Msa0778910:intron 50.0%
TCCGAATACCAACACGGTGT+GGG - chr5_2:59892828-59892847 Msa0778910:intron 50.0%
AATGAGGCAGCCAGGTAAGC+TGG - chr5_2:59891301-59891320 Msa0778910:CDS 55.0%
GTTCTCAAGCCAACACCACC+AGG + chr5_2:59891615-59891634 None:intergenic 55.0%
! TGCACCTTTTCTCACGCCTC+TGG + chr5_2:59892299-59892318 None:intergenic 55.0%
! GAGGCGTGAGAAAAGGTGCA+TGG - chr5_2:59892299-59892318 Msa0778910:intron 55.0%
! GCCCACACCGTGTTGGTATT+CGG + chr5_2:59892832-59892851 None:intergenic 55.0%
GGTTTATGCCCACACCGTGT+TGG + chr5_2:59892839-59892858 None:intergenic 55.0%
!! TAATGGCTCCAGTGCCGGTT+GGG - chr5_2:59893552-59893571 Msa0778910:CDS 55.0%
GTTGAAATCCCAACCGGCAC+TGG + chr5_2:59893563-59893582 None:intergenic 55.0%
!! CTAATGGCTCCAGTGCCGGT+TGG - chr5_2:59893551-59893570 Msa0778910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 59891037 59893759 59891037 ID=Msa0778910;Name=Msa0778910
chr5_2 mRNA 59891037 59893759 59891037 ID=Msa0778910-mRNA-1;Parent=Msa0778910;Name=Msa0778910-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.5|0.75|1|1|4|129|352
chr5_2 exon 59891037 59891711 59891037 ID=Msa0778910-mRNA-1:exon:17568;Parent=Msa0778910-mRNA-1
chr5_2 exon 59892111 59892241 59892111 ID=Msa0778910-mRNA-1:exon:17567;Parent=Msa0778910-mRNA-1
chr5_2 exon 59892393 59892496 59892393 ID=Msa0778910-mRNA-1:exon:17566;Parent=Msa0778910-mRNA-1
chr5_2 exon 59893482 59893759 59893482 ID=Msa0778910-mRNA-1:exon:17565;Parent=Msa0778910-mRNA-1
chr5_2 CDS 59893482 59893759 59893482 ID=Msa0778910-mRNA-1:cds;Parent=Msa0778910-mRNA-1
chr5_2 CDS 59892393 59892496 59892393 ID=Msa0778910-mRNA-1:cds;Parent=Msa0778910-mRNA-1
chr5_2 CDS 59892111 59892241 59892111 ID=Msa0778910-mRNA-1:cds;Parent=Msa0778910-mRNA-1
chr5_2 CDS 59891166 59891711 59891166 ID=Msa0778910-mRNA-1:cds;Parent=Msa0778910-mRNA-1
chr5_2 three_prime_UTR 59891037 59891165 59891037 ID=Msa0778910-mRNA-1:three_prime_utr;Parent=Msa0778910-mRNA-1
Gene Sequence

>Msa0778910

ATGGGAAGTTTACAAAGACCAAAAGATTATGATTTCAAGATCGGTTCTCTGTTCTCTAACATTTCCAATGATAAAGTAATCCAGGAAACAAAGTTTACTAATGAAGTAATTGCAAAAACAAAATATAGAAACAAGACTATCTTTACCCGGTTCACCAAACAGTCGATCGAAGGATGTCTACGCAAAATAGTGAGAACCAGAGCTGTAATGACCAATGCACCAGAAGGTGGAACTGAAAGCAACAGCATACTCAATTTCTTTGCAAATGAGGCAGCCAGAGGCGTGAGAAAAGGTGCATGGACATATGAGGAGGACAATCAACTCAAGGCTTGTATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTAAAAGAGCAGGTTTGAATAGATGCCGGAAAAGTTGTAGATTGAGGTGGGTGAATTATTTAAACCCCGCAATCAAAAGAGAAACTTTCTCTCATGATGAAATTGATATGATTTTTAAGGCTACACAAACTTCTGGGGAACAGATGGTCATTGATTGCTGCAAGGCTTGTAGGACAGCTAATGATGTGAAGAATTATTGGCACACAAATTTGCGCAAGAAAGTGATTCCAAAAAAAGAAGAAAATGAAGAAAAAGAAAAATCTAAAGAAAGCATGATAAAAATCAAATCTCATGAAATTATCAAGCCTCGACCTCGAACTTTATCAACTCATTCACTATGGTTGAAGAAGAAACATAATTTAGTGAGTAATGCTAGTGCAGCAAAACTAGTGGGTGAAGATGGCAATGTTCCAAGAGAGTGTGACAAGACTATACTCCCAAATATTGGTGATGCACAATCATGTGTTGGTAATCTCCCACTTTCTACTATGTGGTGGGAGAGTTTGTTAAACGTAGATGAAGATAGAAGTAATGACAAAATTGGCTCTTGCTCTTTATTACAAGAGGAAAATTTCACTTTGGAGTTTTCAAATGTGGAGGAATTTTTTACTAATGGCTCCAGTGCCGGTTGGGATTTCAACCTTTGTGATATCAATTCATTTGGGGTCTCTAATGGAATAAAAAGTTAA
Protein sequence

>Msa0778910

MGSLQRPKDYDFKIGSLFSNISNDKVIQETKFTNEVIAKTKYRNKTIFTRFTKQSIEGCLRKIVRTRAVMTNAPEGGTESNSILNFFANEAARGVRKGAWTYEEDNQLKACINKYGEGKWHLVPKRAGLNRCRKSCRLRWVNYLNPAIKRETFSHDEIDMIFKATQTSGEQMVIDCCKACRTANDVKNYWHTNLRKKVIPKKEENEEKEKSKESMIKIKSHEIIKPRPRTLSTHSLWLKKKHNLVSNASAAKLVGEDGNVPRECDKTILPNIGDAQSCVGNLPLSTMWWESLLNVDEDRSNDKIGSCSLLQEENFTLEFSNVEEFFTNGSSAGWDFNLCDINSFGVSNGIKS*