AlfalfaGEDB | Msa1307150

M. sativa cultivar zhongmu-4 / Msa1307150

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307150	RHN39669.1	90.299	134	13	0	1	134	116	249	1.68e-69	219

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307150	sp\|U3MMQ4\|TAC1_PRUPE	45.361	97	51	2	23	117	172	268	5.84e-17	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307150	A0A396GE58	90.299	134	13	0	1	134	116	249	8.03e-70	219

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019600	Msa1307150	0.804947	1.691258e-49	-8.615850e-47
Msa0080990	Msa1307150	0.803488	3.403480e-49	-8.615850e-47
Msa0156250	Msa1307150	0.831718	1.424469e-55	-8.615850e-47
Msa0219190	Msa1307150	0.807937	3.960537e-50	-8.615850e-47
Msa0252770	Msa1307150	0.834943	2.237538e-56	-8.615850e-47
Msa0298240	Msa1307150	0.817742	2.815665e-52	-8.615850e-47
Msa0329620	Msa1307150	0.838918	2.161058e-57	-8.615850e-47
Msa0359250	Msa1307150	0.820877	5.436487e-53	-8.615850e-47
Msa0406000	Msa1307150	0.810247	1.267232e-50	-8.615850e-47
Msa0451400	Msa1307150	0.827772	1.300915e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1307150	MtrunA17_Chr8g0346321	90.299	134	13	0	1	134	116	249	1.55e-73	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 32 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCAAGGAAATTGTTG+AGG	0.555557	8_4:+2478239	Msa1307150:CDS
AAAGAGGAAGAAATGATGAT+TGG	0.430176	8_4:+2478216	Msa1307150:exon
AATCACATGGTTCAATTCTT+TGG	0.203507	8_4:-2480371	None:intergenic
AATGATGATTGGAAACTTCA+AGG	0.448863	8_4:+2478227	Msa1307150:exon
ACACAAATTACAAAATCACA+TGG	0.699258	8_4:-2480384	None:intergenic
ACCACATGAATGAAGGCAAA+TGG	0.487764	8_4:+2478907	Msa1307150:CDS
ACGTATGAGATTAAATACTT+AGG	0.485233	8_4:+2480327	Msa1307150:three_prime_UTR
ACTAGCTAGTGTTAAGCCAT+GGG	0.596171	8_4:+2480265	Msa1307150:exon
ACTTGACTCAACCAAGAGTT+TGG	0.334804	8_4:-2478391	None:intergenic
ACTTTCTTGATGTCTTTCAT+TGG	0.437252	8_4:-2478492	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGATGAGAACAACTTTG+AGG	+	chr8_4:2478149-2478168	Msa1307150:five_prime_UTR	30.0%
AAAGAGGAAGAAATGATGAT+TGG	+	chr8_4:2478216-2478235	Msa1307150:exon	30.0%
AATGATGATTGGAAACTTCA+AGG	+	chr8_4:2478227-2478246	Msa1307150:exon	30.0%
AAACTTCAAGGAAATTGTTG+AGG	+	chr8_4:2478239-2478258	Msa1307150:CDS	30.0%
TTGAAGCTGATCAAAAGAAA+AGG	+	chr8_4:2478304-2478323	Msa1307150:CDS	30.0%
ACTTTCTTGATGTCTTTCAT+TGG	-	chr8_4:2478495-2478514	None:intergenic	30.0%
CGATAAAATTGGAATGATAC+AGG	-	chr8_4:2479316-2479335	None:intergenic	30.0%
TACATACACAATTAAACTCG+AGG	+	chr8_4:2479403-2479422	Msa1307150:intron	30.0%
ACAGAAGGAGGATAAAATTA+AGG	-	chr8_4:2479444-2479463	None:intergenic	30.0%
ATAGATAGGTATATGGATGA+TGG	+	chr8_4:2479475-2479494	Msa1307150:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	2478138	2480495	2478138	ID=Msa1307150;Name=Msa1307150
chr8_4	mRNA	2478138	2480495	2478138	ID=Msa1307150-mRNA-1;Parent=Msa1307150;Name=Msa1307150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=90\|1\|1\|1\|0.5\|0.33\|3\|226\|140
chr8_4	exon	2478138	2478512	2478138	ID=Msa1307150-mRNA-1:exon:774;Parent=Msa1307150-mRNA-1
chr8_4	exon	2478825	2478955	2478825	ID=Msa1307150-mRNA-1:exon:775;Parent=Msa1307150-mRNA-1
chr8_4	exon	2480263	2480495	2480263	ID=Msa1307150-mRNA-1:exon:776;Parent=Msa1307150-mRNA-1
chr8_4	five_prime_UTR	2478138	2478227	2478138	ID=Msa1307150-mRNA-1:five_prime_utr;Parent=Msa1307150-mRNA-1
chr8_4	CDS	2478228	2478512	2478228	ID=Msa1307150-mRNA-1:cds;Parent=Msa1307150-mRNA-1
chr8_4	CDS	2478825	2478955	2478825	ID=Msa1307150-mRNA-1:cds;Parent=Msa1307150-mRNA-1
chr8_4	CDS	2480263	2480269	2480263	ID=Msa1307150-mRNA-1:cds;Parent=Msa1307150-mRNA-1
chr8_4	three_prime_UTR	2480270	2480495	2480270	ID=Msa1307150-mRNA-1:three_prime_utr;Parent=Msa1307150-mRNA-1

Gene Sequence

>Msa1307150

ATGATGATTGGAAACTTCAAGGAAATTGTTGAGGTGGCACCTATGATTTGTCATGAAATCATGGAGGCAAATGATGTTGAAGCTGATCAAAAGAAAAGGATCACATTAGCTGATCTATTCCTTGCTGATTCTGATGTTAAGATGAAACTTGATTATTCTGCAGCCAAACTCTTGGTTGAGTCAAGTGAAAAACCAAAACTTAAAGGAAAAAATGGATTTTCTTTTGCTAAGAAGATTATTCCCCTTGTTAAGGAAAATGCACGTCCAATGAAAGACATCAAGAAACTGATGAAGAAGATGCTAAAGAGGAAAATTCATCCAGATCTTGATGTCAAGAATCACAAAGCAGAAGAAAACATAATTAATAACCACATGAATGAAGGCAAATGGCTCAAGGTCTTTTATCGCAGTTTAAGGTACTAG

Protein sequence

>Msa1307150

MMIGNFKEIVEVAPMICHEIMEANDVEADQKKRITLADLFLADSDVKMKLDYSAAKLLVESSEKPKLKGKNGFSFAKKIIPLVKENARPMKDIKKLMKKMLKRKIHPDLDVKNHKAEENIINNHMNEGKWLKVFYRSLRY*