AlfalfaGEDB | Msa0786060

M. sativa cultivar zhongmu-4 / Msa0786060

KEGG: -
GO: GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
PFAM: PF08212.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786060	XP_003617483.2	95.808	334	14	0	1	334	1	334	0.0	652

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786060	sp\|Q9STS7\|CHL_ARATH	69.841	315	86	5	25	334	43	353	2.14e-154	439

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786060	G7K3G5	95.808	334	14	0	1	334	1	334	0.0	652

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0636720	Msa0786060	0.802774	4.782523e-49	-8.615850e-47
Msa0644630	Msa0786060	0.804635	1.965233e-49	-8.615850e-47
Msa0742160	Msa0786060	0.989114	9.432968e-177	-8.615850e-47
Msa0786060	Msa0823420	0.994402	5.873118e-207	-8.615850e-47
Msa0786060	Msa0862290	0.987756	2.023779e-171	-8.615850e-47
Msa0548210	Msa0786060	0.811038	8.551052e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786060	MtrunA17_Chr5g0443651	95.808	334	14	0	1	334	1	334	0.0	652

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786060	AT3G47860.1	69.841	315	86	5	25	334	43	353	2.18e-155	439

Find 68 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAATTATGCTCTTGTTTC+TGG	0.024981	5_2:-71453467	Msa0786060:CDS
AAAACTTACCTTGCAGATTA+TGG	0.223001	5_2:-71452602	Msa0786060:CDS
TTACTAAATTCTTTGCATTA+AGG	0.241023	5_2:-71452219	Msa0786060:three_prime_UTR
TCAGTTCAAGATCAGGAAAT+TGG	0.260295	5_2:+71452471	None:intergenic
TTTGACCCTATCAGATATTC+AGG	0.279436	5_2:-71454001	Msa0786060:CDS
GAGTGCAATGACAGTCTTCT+TGG	0.317907	5_2:+71453930	None:intergenic
ATTTATCTCTCCAGCAAATC+AGG	0.333389	5_2:-71455061	Msa0786060:intron
TTGTATTTCTCTATAAATTC+AGG	0.336114	5_2:+71452623	None:intergenic
CATCTTCCTGAATATCTGAT+AGG	0.337240	5_2:+71453995	None:intergenic
ATGGGTATATAACTGGCATT+AGG	0.339085	5_2:-71453640	Msa0786060:CDS
TCTGATAGGGTCAAAATTCT+TGG	0.339639	5_2:+71454009	None:intergenic
CATAGCTGCCAGTTTACTAT+TGG	0.341261	5_2:+71452529	None:intergenic
ACAATACAAACCTGATTTGC+TGG	0.354372	5_2:+71455051	None:intergenic
TTCACTTGATCTTTCAAGTA+AGG	0.357987	5_2:-71455127	Msa0786060:CDS
GTAGCTTAGGTGATGCTCTT+AGG	0.358042	5_2:+71455300	None:intergenic
ATGTCTTTCACAAGAAGATT+TGG	0.359868	5_2:-71453606	Msa0786060:CDS
AACACAATCATTAAAATTCA+AGG	0.367727	5_2:+71452258	None:intergenic
GTTAGTGCCTGTTGCATCCC+TGG	0.384685	5_2:+71452497	None:intergenic
TTCTCTATAAATTCAGGTCC+AGG	0.399668	5_2:+71452629	None:intergenic
TGGGTATATAACTGGCATTA+GGG	0.407261	5_2:-71453639	Msa0786060:CDS
AGGGTGTGTATACATTTGAT+AGG	0.419310	5_2:-71453712	Msa0786060:CDS
AGTAATGTCCAATAGTAAAC+TGG	0.423649	5_2:-71452537	Msa0786060:CDS
TCACTGGACTCATTCTCAAA+TGG	0.439527	5_2:+71454070	None:intergenic
TGCTCTTGTTTCTGGAGCTA+AGG	0.441426	5_2:-71453459	Msa0786060:CDS
GAAGTACAGTGAAGTAGCTT+AGG	0.441656	5_2:+71455287	None:intergenic
GGCCCTGATGGGTATATAAC+TGG	0.444525	5_2:-71453647	Msa0786060:CDS
ATAAATTCAGGTCCAGGGTT+AGG	0.446321	5_2:+71452635	None:intergenic
AAAGTATCAACTTGGATAGC+TGG	0.451315	5_2:+71453683	None:intergenic
ATGCCAGTTATATACCCATC+AGG	0.453847	5_2:+71453644	None:intergenic
GGTGTATCTTTAATTTCGCT+TGG	0.461443	5_2:+71452572	None:intergenic
TCAGTAGCAATCACATCATA+AGG	0.465892	5_2:+71453494	None:intergenic
ATCACATCATAAGGCTCCTT+GGG	0.467344	5_2:+71453503	None:intergenic
CTATCAGATATTCAGGAAGA+TGG	0.471288	5_2:-71453994	Msa0786060:CDS
GTCCATGCCAGGGATGCAAC+AGG	0.473508	5_2:-71452504	Msa0786060:CDS
AATCACATCATAAGGCTCCT+TGG	0.473774	5_2:+71453502	None:intergenic
TTGGGAATGAACGGCAATGT+TGG	0.490083	5_2:+71453521	None:intergenic
GAGCCCTTCAGTTCAAGATC+AGG	0.499745	5_2:+71452464	None:intergenic
AACATTGCCGTTCATTCCCA+AGG	0.502752	5_2:-71453519	Msa0786060:CDS
GCAGCTATGATGTCCATGCC+AGG	0.511229	5_2:-71452515	Msa0786060:CDS
ATTTCCTGATCTTGAACTGA+AGG	0.514630	5_2:-71452468	Msa0786060:CDS
TCTCTATAAATTCAGGTCCA+GGG	0.519094	5_2:+71452630	None:intergenic
ATATAACTGGCATTAGGGGA+AGG	0.531773	5_2:-71453634	Msa0786060:CDS
ATCTTCCTGAATATCTGATA+GGG	0.534452	5_2:+71453996	None:intergenic
CTTATCCTCTCATTCATCAA+AGG	0.536489	5_2:-71455262	Msa0786060:intron
GGGTGTGTATACATTTGATA+GGG	0.537787	5_2:-71453711	Msa0786060:CDS
TGCTGGAGAGATAAATATCA+AGG	0.541440	5_2:+71455068	None:intergenic
GACATTACTTCACAATCTTG+AGG	0.543352	5_2:+71452551	None:intergenic
CTAAATTCTTTGCATTAAGG+AGG	0.548450	5_2:-71452216	Msa0786060:three_prime_UTR
TTTCACTGGCAATAGCAAGC+TGG	0.550592	5_2:+71454107	None:intergenic
TGCCTGTTGCATCCCTGGCA+TGG	0.552579	5_2:+71452502	None:intergenic
TATAACTGGCATTAGGGGAA+GGG	0.559959	5_2:-71453633	Msa0786060:CDS
TGTTACCTTTGATGAATGAG+AGG	0.569074	5_2:+71455257	None:intergenic
TTTCCTGATCTTGAACTGAA+GGG	0.583532	5_2:-71452467	Msa0786060:CDS
GTTTCAAATACACTTGTGAG+TGG	0.612175	5_2:+71452428	None:intergenic
TAAGGCTCCTTGGGAATGAA+CGG	0.612716	5_2:+71453512	None:intergenic
TGAGACACAACTTGAGACGC+AGG	0.613938	5_2:-71453576	Msa0786060:CDS
AGAAGACTGTCATTGCACTC+AGG	0.620753	5_2:-71453927	Msa0786060:intron
GAGACGCAGGAGATGATCAA+AGG	0.621662	5_2:-71453563	Msa0786060:CDS
GATTATAGCCATAATCTGCA+AGG	0.627467	5_2:+71452594	None:intergenic
TACTCAAGGACACCTAACCC+TGG	0.635374	5_2:-71452647	Msa0786060:CDS
GAAAATCTTATGATGATGAG+AGG	0.636432	5_2:-71454040	Msa0786060:CDS
AAATTGAGAAAGCAAAGTCA+TGG	0.636574	5_2:-71455333	None:intergenic
TGCCAGTTATATACCCATCA+GGG	0.636591	5_2:+71453645	None:intergenic
GGGTATATAACTGGCATTAG+GGG	0.637286	5_2:-71453638	Msa0786060:CDS
CAGCTATGATGTCCATGCCA+GGG	0.657155	5_2:-71452514	Msa0786060:CDS
CAATATTACAGATATACTCA+AGG	0.664599	5_2:-71452661	Msa0786060:intron
TGAACGGCAATGTTGGAAAG+CGG	0.667583	5_2:+71453528	None:intergenic
GAAGTTGCTTCACTCAAACG+CGG	0.736177	5_2:-71453968	Msa0786060:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCTTAAATTATTTATTAG+TGG	-	chr5_2:71454782-71454801	Msa0786060:intron	10.0%
!!!	TATACAGATTTTAATTATAG+TGG	-	chr5_2:71452586-71452605	Msa0786060:CDS	15.0%
!!	TTGTAACTTTAATACATTTA+TGG	+	chr5_2:71452744-71452763	None:intergenic	15.0%
!!!	AATTTGCTTATAATTCATTT+CGG	+	chr5_2:71453006-71453025	None:intergenic	15.0%
!!!	AAATTTTACTTCATCTATTT+TGG	-	chr5_2:71453021-71453040	Msa0786060:intron	15.0%
!!!	AGGCAATAATTTTTTTTTAT+TGG	-	chr5_2:71453115-71453134	Msa0786060:intron	15.0%
!!!	TTCTTCTAAATTTTAATTGA+TGG	-	chr5_2:71454435-71454454	Msa0786060:intron	15.0%
!!	GTTACAACAATAATTGATAA+TGG	+	chr5_2:71452340-71452359	None:intergenic	20.0%
!!	TTTCAATGAATCAATGTATT+AGG	-	chr5_2:71453070-71453089	Msa0786060:intron	20.0%
!!!	TTTTTTTTATTGGATTGCAT+AGG	-	chr5_2:71453125-71453144	Msa0786060:intron	20.0%
!!	AATAAATATAGTCTGTGTTT+AGG	-	chr5_2:71453648-71453667	Msa0786060:CDS	20.0%
!!	AGTATATAAATGACATTTCA+GGG	-	chr5_2:71453807-71453826	Msa0786060:intron	20.0%
!!!	TAAATTTTAATTGATGGCAA+TGG	-	chr5_2:71454441-71454460	Msa0786060:intron	20.0%
!!	ATATCTGTAATATTGATCAA+GGG	+	chr5_2:71454872-71454891	None:intergenic	20.0%
!!	TATATCTGTAATATTGATCA+AGG	+	chr5_2:71454873-71454892	None:intergenic	20.0%
!!	TTGTATTTCTCTATAAATTC+AGG	+	chr5_2:71454918-71454937	None:intergenic	20.0%
!!	AACACAATCATTAAAATTCA+AGG	+	chr5_2:71455283-71455302	None:intergenic	20.0%
!!	TTACTAAATTCTTTGCATTA+AGG	-	chr5_2:71455319-71455338	Msa0786060:exon	20.0%
!	TAGTAAAATTCTTAGAGTTG+TGG	+	chr5_2:71452544-71452563	None:intergenic	25.0%
!	TATATGATTCCAAAATCACA+TGG	-	chr5_2:71452628-71452647	Msa0786060:CDS	25.0%
!!!	TCTTATGCTTGTAGTTTTAT+GGG	+	chr5_2:71452836-71452855	None:intergenic	25.0%
!	TGACTTATGAAGGTTAATTT+AGG	-	chr5_2:71453095-71453114	Msa0786060:intron	25.0%
!	TACACATGTTAAGAAAAAGT+AGG	+	chr5_2:71453164-71453183	None:intergenic	25.0%
!	GAACAATGTTAAGTTAACAA+GGG	+	chr5_2:71453690-71453709	None:intergenic	25.0%
!	TGAACAATGTTAAGTTAACA+AGG	+	chr5_2:71453691-71453710	None:intergenic	25.0%
!	CATATTAATATCAAGAAGCA+TGG	+	chr5_2:71453787-71453806	None:intergenic	25.0%
!	GAGTATATAAATGACATTTC+AGG	-	chr5_2:71453806-71453825	Msa0786060:intron	25.0%
!!!	TTGATACTTTTTGTGTTCAT+GGG	-	chr5_2:71453868-71453887	Msa0786060:intron	25.0%
!	AATAAGCTGAAAACAGATTA+TGG	+	chr5_2:71454244-71454263	None:intergenic	25.0%
!!	AATCATGTCTTGATAATTTG+TGG	-	chr5_2:71454582-71454601	Msa0786060:intron	25.0%
!	AACTAGTATATGTGTTAACT+TGG	+	chr5_2:71454653-71454672	None:intergenic	25.0%
!	TAGTTTATTATGACGTTTGT+AGG	-	chr5_2:71454668-71454687	Msa0786060:intron	25.0%
!	TAATTGAATGTAATATGCGT+TGG	+	chr5_2:71454755-71454774	None:intergenic	25.0%
!	AATATTATGAATTACGACAC+CGG	+	chr5_2:71454830-71454849	None:intergenic	25.0%
!	CAATATTACAGATATACTCA+AGG	-	chr5_2:71454877-71454896	Msa0786060:intron	25.0%
!!!	TTTTGTTTCTAGACAATGCA+GGG	-	chr5_2:71452360-71452379	Msa0786060:three_prime_UTR	30.0%
!	TTCACTTGATCTTTCAAGTA+AGG	-	chr5_2:71452411-71452430	Msa0786060:CDS	30.0%
!	CTGACTAAACATGTTTTATC+TGG	-	chr5_2:71452436-71452455	Msa0786060:CDS	30.0%
!!	GTCTTATGCTTGTAGTTTTA+TGG	+	chr5_2:71452837-71452856	None:intergenic	30.0%
	TTGAAGTTTCGATACATTCA+AGG	-	chr5_2:71452873-71452892	Msa0786060:intron	30.0%
	AAATCCACAGAAAAACGTAA+TGG	+	chr5_2:71452965-71452984	None:intergenic	30.0%
	TTGCTTATAATTCATTTCGG+AGG	+	chr5_2:71453003-71453022	None:intergenic	30.0%
	GTATTAGGTATGACTTATGA+AGG	-	chr5_2:71453085-71453104	Msa0786060:intron	30.0%
	TTGCTTATATTTCAGTCTAG+AGG	-	chr5_2:71453197-71453216	Msa0786060:intron	30.0%
!	TCTAGAGGAAGTAGATATTT+TGG	-	chr5_2:71453212-71453231	Msa0786060:intron	30.0%
!	CTAGAGGAAGTAGATATTTT+GGG	-	chr5_2:71453213-71453232	Msa0786060:intron	30.0%
	CACTCTTTAATATGACCATA+TGG	-	chr5_2:71453242-71453261	Msa0786060:intron	30.0%
	CATTTGTAAGAACTTCCATA+TGG	+	chr5_2:71453260-71453279	None:intergenic	30.0%
!	GAAAATCTTATGATGATGAG+AGG	-	chr5_2:71453498-71453517	Msa0786060:CDS	30.0%
	ATCTTCCTGAATATCTGATA+GGG	+	chr5_2:71453545-71453564	None:intergenic	30.0%
	AGTTAACAAGGGAAATAAGT+TGG	+	chr5_2:71453679-71453698	None:intergenic	30.0%
	AAATAGATTCTATGCACATG+TGG	+	chr5_2:71453750-71453769	None:intergenic	30.0%
!!	GAACACAAAAAGTATCAACT+TGG	+	chr5_2:71453866-71453885	None:intergenic	30.0%
!!	GTTGATACTTTTTGTGTTCA+TGG	-	chr5_2:71453867-71453886	Msa0786060:intron	30.0%
!!	TGATACTTTTTGTGTTCATG+GGG	-	chr5_2:71453869-71453888	Msa0786060:intron	30.0%
	ATGTCTTTCACAAGAAGATT+TGG	-	chr5_2:71453932-71453951	Msa0786060:CDS	30.0%
	TTAATAGCTATGAGTTAGCA+AGG	-	chr5_2:71454526-71454545	Msa0786060:intron	30.0%
	TAATAGCTATGAGTTAGCAA+GGG	-	chr5_2:71454527-71454546	Msa0786060:intron	30.0%
	AAAACTTACCTTGCAGATTA+TGG	-	chr5_2:71454936-71454955	Msa0786060:intron	30.0%
	AGTAATGTCCAATAGTAAAC+TGG	-	chr5_2:71455001-71455020	Msa0786060:intron	30.0%
	CTAAATTCTTTGCATTAAGG+AGG	-	chr5_2:71455322-71455341	Msa0786060:exon	30.0%
	CTTATCCTCTCATTCATCAA+AGG	-	chr5_2:71452276-71452295	Msa0786060:three_prime_UTR	35.0%
	TGTTACCTTTGATGAATGAG+AGG	+	chr5_2:71452284-71452303	None:intergenic	35.0%
!!!	CTTTTGTTTCTAGACAATGC+AGG	-	chr5_2:71452359-71452378	Msa0786060:three_prime_UTR	35.0%
!!	TTTGTTTCTAGACAATGCAG+GGG	-	chr5_2:71452361-71452380	Msa0786060:three_prime_UTR	35.0%
	TGCTGGAGAGATAAATATCA+AGG	+	chr5_2:71452473-71452492	None:intergenic	35.0%
	ATTTATCTCTCCAGCAAATC+AGG	-	chr5_2:71452477-71452496	Msa0786060:CDS	35.0%
!	ACAATACAAACCTGATTTGC+TGG	+	chr5_2:71452490-71452509	None:intergenic	35.0%
!	AGCTAATGTCCATGTGATTT+TGG	+	chr5_2:71452640-71452659	None:intergenic	35.0%
!!	GTGTAGTCTTTTTGTCGTTT+TGG	-	chr5_2:71452810-71452829	Msa0786060:intron	35.0%
	CTTATAATTCATTTCGGAGG+AGG	+	chr5_2:71453000-71453019	None:intergenic	35.0%
	ATGGAAGTTCTTACAAATGC+TGG	-	chr5_2:71453261-71453280	Msa0786060:intron	35.0%
!	CTACAGACTGTTGATGAAAA+AGG	+	chr5_2:71453377-71453396	None:intergenic	35.0%
!	TGAACTAACTGCATTTTCAC+TGG	+	chr5_2:71453448-71453467	None:intergenic	35.0%
!!	AAGATTTTCGCTGTTTTCAC+TGG	+	chr5_2:71453487-71453506	None:intergenic	35.0%
	TCTGATAGGGTCAAAATTCT+TGG	+	chr5_2:71453532-71453551	None:intergenic	35.0%
	TTTGACCCTATCAGATATTC+AGG	-	chr5_2:71453537-71453556	Msa0786060:CDS	35.0%
	CATCTTCCTGAATATCTGAT+AGG	+	chr5_2:71453546-71453565	None:intergenic	35.0%
	CTATCAGATATTCAGGAAGA+TGG	-	chr5_2:71453544-71453563	Msa0786060:CDS	35.0%
	TGTTCACAACTAACTGTTGA+AGG	-	chr5_2:71453705-71453724	Msa0786060:CDS	35.0%
	GTTCACAACTAACTGTTGAA+GGG	-	chr5_2:71453706-71453725	Msa0786060:CDS	35.0%
	TTCACAACTAACTGTTGAAG+GGG	-	chr5_2:71453707-71453726	Msa0786060:CDS	35.0%
!	AATATCAAGAAGCATGGTCA+TGG	+	chr5_2:71453781-71453800	None:intergenic	35.0%
	AGGGTGTGTATACATTTGAT+AGG	-	chr5_2:71453826-71453845	Msa0786060:intron	35.0%
	GGGTGTGTATACATTTGATA+GGG	-	chr5_2:71453827-71453846	Msa0786060:intron	35.0%
!	AAAGTATCAACTTGGATAGC+TGG	+	chr5_2:71453858-71453877	None:intergenic	35.0%
!!	GATACTTTTTGTGTTCATGG+GGG	-	chr5_2:71453870-71453889	Msa0786060:intron	35.0%
	ATGGGTATATAACTGGCATT+AGG	-	chr5_2:71453898-71453917	Msa0786060:intron	35.0%
	TGGGTATATAACTGGCATTA+GGG	-	chr5_2:71453899-71453918	Msa0786060:intron	35.0%
	TCAGTAGCAATCACATCATA+AGG	+	chr5_2:71454047-71454066	None:intergenic	35.0%
!	GACAATTATGCTCTTGTTTC+TGG	-	chr5_2:71454071-71454090	Msa0786060:CDS	35.0%
!!!	TAAGGACACAAGTTTTGTTC+AGG	-	chr5_2:71454097-71454116	Msa0786060:CDS	35.0%
!!	CTTATTTCTATAAGCTCTCC+AGG	-	chr5_2:71454258-71454277	Msa0786060:intron	35.0%
	CAAGTTTATCAACTCTTTCC+TGG	+	chr5_2:71454609-71454628	None:intergenic	35.0%
	TCTCTATAAATTCAGGTCCA+GGG	+	chr5_2:71454911-71454930	None:intergenic	35.0%
	TTCTCTATAAATTCAGGTCC+AGG	+	chr5_2:71454912-71454931	None:intergenic	35.0%
	GATTATAGCCATAATCTGCA+AGG	+	chr5_2:71454947-71454966	None:intergenic	35.0%
!	GGTGTATCTTTAATTTCGCT+TGG	+	chr5_2:71454969-71454988	None:intergenic	35.0%
	GACATTACTTCACAATCTTG+AGG	+	chr5_2:71454990-71455009	None:intergenic	35.0%
	TCAGTTCAAGATCAGGAAAT+TGG	+	chr5_2:71455070-71455089	None:intergenic	35.0%
	ATTTCCTGATCTTGAACTGA+AGG	-	chr5_2:71455070-71455089	Msa0786060:CDS	35.0%
	TTTCCTGATCTTGAACTGAA+GGG	-	chr5_2:71455071-71455090	Msa0786060:CDS	35.0%
	GTTTCAAATACACTTGTGAG+TGG	+	chr5_2:71455113-71455132	None:intergenic	35.0%
	GAAGTACAGTGAAGTAGCTT+AGG	+	chr5_2:71452254-71452273	None:intergenic	40.0%
	ATCACATGGACATTAGCTAG+AGG	-	chr5_2:71452642-71452661	Msa0786060:CDS	40.0%
	CGAATGTGTCTTTCTCTAGT+CGG	-	chr5_2:71452773-71452792	Msa0786060:intron	40.0%
!	CAGACTGTTGATGAAAAAGG+TGG	+	chr5_2:71453374-71453393	None:intergenic	40.0%
	TCACTGGACTCATTCTCAAA+TGG	+	chr5_2:71453471-71453490	None:intergenic	40.0%
	TCACAACTAACTGTTGAAGG+GGG	-	chr5_2:71453708-71453727	Msa0786060:CDS	40.0%
	TGCCAGTTATATACCCATCA+GGG	+	chr5_2:71453896-71453915	None:intergenic	40.0%
	ATGCCAGTTATATACCCATC+AGG	+	chr5_2:71453897-71453916	None:intergenic	40.0%
	GGGTATATAACTGGCATTAG+GGG	-	chr5_2:71453900-71453919	Msa0786060:intron	40.0%
	ATATAACTGGCATTAGGGGA+AGG	-	chr5_2:71453904-71453923	Msa0786060:intron	40.0%
	TATAACTGGCATTAGGGGAA+GGG	-	chr5_2:71453905-71453924	Msa0786060:intron	40.0%
	ATCACATCATAAGGCTCCTT+GGG	+	chr5_2:71454038-71454057	None:intergenic	40.0%
	AATCACATCATAAGGCTCCT+TGG	+	chr5_2:71454039-71454058	None:intergenic	40.0%
!!	GTTGTTTTCATGAGCTATCC+TGG	+	chr5_2:71454279-71454298	None:intergenic	40.0%
!	GTCTTGATAATTTGTGGTCC+AGG	-	chr5_2:71454588-71454607	Msa0786060:intron	40.0%
	CGTTTGTAGGACCAATATAC+CGG	-	chr5_2:71454681-71454700	Msa0786060:intron	40.0%
!!	AATATGCGTTGGTGTCATGT+CGG	+	chr5_2:71454744-71454763	None:intergenic	40.0%
	ATAAATTCAGGTCCAGGGTT+AGG	+	chr5_2:71454906-71454925	None:intergenic	40.0%
	CATAGCTGCCAGTTTACTAT+TGG	+	chr5_2:71455012-71455031	None:intergenic	40.0%
	GTAGCTTAGGTGATGCTCTT+AGG	+	chr5_2:71452241-71452260	None:intergenic	45.0%
!	AGCGCCATTACGTTTTTCTG+TGG	-	chr5_2:71452958-71452977	Msa0786060:intron	45.0%
	TTTCACTGGCAATAGCAAGC+TGG	+	chr5_2:71453434-71453453	None:intergenic	45.0%
	GAAGTTGCTTCACTCAAACG+CGG	-	chr5_2:71453570-71453589	Msa0786060:CDS	45.0%
	GAGTGCAATGACAGTCTTCT+TGG	+	chr5_2:71453611-71453630	None:intergenic	45.0%
	AGAAGACTGTCATTGCACTC+AGG	-	chr5_2:71453611-71453630	Msa0786060:CDS	45.0%
	TGAACGGCAATGTTGGAAAG+CGG	+	chr5_2:71454013-71454032	None:intergenic	45.0%
	TTGGGAATGAACGGCAATGT+TGG	+	chr5_2:71454020-71454039	None:intergenic	45.0%
	AACATTGCCGTTCATTCCCA+AGG	-	chr5_2:71454019-71454038	Msa0786060:CDS	45.0%
	TAAGGCTCCTTGGGAATGAA+CGG	+	chr5_2:71454029-71454048	None:intergenic	45.0%
!!	TGCTCTTGTTTCTGGAGCTA+AGG	-	chr5_2:71454079-71454098	Msa0786060:CDS	45.0%
	GTAGGACCAATATACCGGAT+TGG	-	chr5_2:71454686-71454705	Msa0786060:intron	45.0%
	CTACTTGTCAGTGTCATGTC+CGG	-	chr5_2:71454808-71454827	Msa0786060:intron	45.0%
!	TCACTCAAACGCGGTTTTGC+TGG	-	chr5_2:71453579-71453598	Msa0786060:CDS	50.0%
	CAACTAACTGTTGAAGGGGG+AGG	-	chr5_2:71453711-71453730	Msa0786060:CDS	50.0%
!	GGCCCTGATGGGTATATAAC+TGG	-	chr5_2:71453891-71453910	Msa0786060:intron	50.0%
	TGAGACACAACTTGAGACGC+AGG	-	chr5_2:71453962-71453981	Msa0786060:CDS	50.0%
	GAGACGCAGGAGATGATCAA+AGG	-	chr5_2:71453975-71453994	Msa0786060:CDS	50.0%
!	GGACCAATATACCGGATTGG+TGG	-	chr5_2:71454689-71454708	Msa0786060:intron	50.0%
	ACGCCACCAATCCGGTATAT+TGG	+	chr5_2:71454695-71454714	None:intergenic	50.0%
	CACTGACATGTGTGAGACAC+CGG	+	chr5_2:71454720-71454739	None:intergenic	50.0%
	TACTCAAGGACACCTAACCC+TGG	-	chr5_2:71454891-71454910	Msa0786060:intron	50.0%
	CAGCTATGATGTCCATGCCA+GGG	-	chr5_2:71455024-71455043	Msa0786060:intron	50.0%
	GAGCCCTTCAGTTCAAGATC+AGG	+	chr5_2:71455077-71455096	None:intergenic	50.0%
!	AAACGCGGTTTTGCTGGAGC+AGG	-	chr5_2:71453585-71453604	Msa0786060:CDS	55.0%
	GACTGTCATTGCACTCAGGC+AGG	-	chr5_2:71453615-71453634	Msa0786060:CDS	55.0%
	GCAGCTATGATGTCCATGCC+AGG	-	chr5_2:71455023-71455042	Msa0786060:intron	55.0%
	GTTAGTGCCTGTTGCATCCC+TGG	+	chr5_2:71455044-71455063	None:intergenic	55.0%
	TGTGTTCATGGGGGCCCTGA+TGG	-	chr5_2:71453879-71453898	Msa0786060:intron	60.0%
	GTGTTCATGGGGGCCCTGAT+GGG	-	chr5_2:71453880-71453899	Msa0786060:intron	60.0%
!!	TACCGGATTGGTGGCGTGTC+CGG	-	chr5_2:71454698-71454717	Msa0786060:intron	60.0%
	GTCCATGCCAGGGATGCAAC+AGG	-	chr5_2:71455034-71455053	Msa0786060:intron	60.0%
	TGCCTGTTGCATCCCTGGCA+TGG	+	chr5_2:71455039-71455058	None:intergenic	60.0%
	CACCGGACACGCCACCAATC+CGG	+	chr5_2:71454703-71454722	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	71452213	71455347	71452213	ID=Msa0786060;Name=Msa0786060
chr5_2	mRNA	71452213	71455347	71452213	ID=Msa0786060-mRNA-1;Parent=Msa0786060;Name=Msa0786060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=11\|1\|1\|1\|1\|1\|5\|181\|334
chr5_2	exon	71452213	71452672	71452213	ID=Msa0786060-mRNA-1:exon:21546;Parent=Msa0786060-mRNA-1
chr5_2	exon	71453442	71453732	71453442	ID=Msa0786060-mRNA-1:exon:21545;Parent=Msa0786060-mRNA-1
chr5_2	exon	71453928	71454170	71453928	ID=Msa0786060-mRNA-1:exon:21544;Parent=Msa0786060-mRNA-1
chr5_2	exon	71455062	71455179	71455062	ID=Msa0786060-mRNA-1:exon:21543;Parent=Msa0786060-mRNA-1
chr5_2	exon	71455263	71455347	71455263	ID=Msa0786060-mRNA-1:exon:21542;Parent=Msa0786060-mRNA-1
chr5_2	five_prime_UTR	71455337	71455347	71455337	ID=Msa0786060-mRNA-1:five_prime_utr;Parent=Msa0786060-mRNA-1
chr5_2	CDS	71455263	71455336	71455263	ID=Msa0786060-mRNA-1:cds;Parent=Msa0786060-mRNA-1
chr5_2	CDS	71455062	71455179	71455062	ID=Msa0786060-mRNA-1:cds;Parent=Msa0786060-mRNA-1
chr5_2	CDS	71453928	71454170	71453928	ID=Msa0786060-mRNA-1:cds;Parent=Msa0786060-mRNA-1
chr5_2	CDS	71453442	71453732	71453442	ID=Msa0786060-mRNA-1:cds;Parent=Msa0786060-mRNA-1
chr5_2	CDS	71452394	71452672	71452394	ID=Msa0786060-mRNA-1:cds;Parent=Msa0786060-mRNA-1
chr5_2	three_prime_UTR	71452213	71452393	71452213	ID=Msa0786060-mRNA-1:three_prime_utr;Parent=Msa0786060-mRNA-1

Gene Sequence

>Msa0786060

ATGGTAGATATTTTCCTAAGAGCATCACCTAAGCTACTTCACTGTACTTCTTCTTATCCTCTCATTCATCAAAGGGGAGTGTCAAGAAAAACACAGTTGAAGTGTTCACTTGATCTTTCAAGTAAGGTTCTGACTAAACATGTTTTATCTGGTCTTGCTGCTTCCTTGATATTTATCTCTCCAGCAAATCAGTCTGTAGCAGCAGATCTATATTCTCATCAACAAAACATATGCCAGCTTGCTATTGCCAGTGAAAATGCAGTTAGTTCACCATTTGAGAATGAGTCCAGTGAAAACAGCGAAAATCTTATGATGATGAGAGGTATGACAGCCAAGAATTTTGACCCTATCAGATATTCAGGAAGATGGTTTGAAGTTGCTTCACTCAAACGCGGTTTTGCTGGAGCAGGCCAAGAAGACTGTCATTGCACTCAGGGTGTGTATACATTTGATAGGGAAAAACCAGCTATCCAAGTTGATACTTTTTGTGTTCATGGGGGCCCTGATGGGTATATAACTGGCATTAGGGGAAGGGTTCAATGTCTTTCACAAGAAGATTTGGTGAAAAATGAGACACAACTTGAGACGCAGGAGATGATCAAAGGAAAATGCTTTCTCCGCTTTCCAACATTGCCGTTCATTCCCAAGGAGCCTTATGATGTGATTGCTACTGATTATGACAATTATGCTCTTGTTTCTGGAGCTAAGGACACAAGTTTTGTTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAATACAAAACTTACCTTGCAGATTATGGCTATAATCCAAGCGAAATTAAAGATACACCTCAAGATTGTGAAGTAATGTCCAATAGTAAACTGGCAGCTATGATGTCCATGCCAGGGATGCAACAGGCACTAACAAACCAATTTCCTGATCTTGAACTGAAGGGCTCTGTTGCATTTGATCCACTCACAAGTGTATTTGAAACTCTGAAGAAGCTTGTTGAGCTTTATTTTAAGTAG

Protein sequence

>Msa0786060

MVDIFLRASPKLLHCTSSYPLIHQRGVSRKTQLKCSLDLSSKVLTKHVLSGLAASLIFISPANQSVAADLYSHQQNICQLAIASENAVSSPFENESSENSENLMMMRGMTAKNFDPIRYSGRWFEVASLKRGFAGAGQEDCHCTQGVYTFDREKPAIQVDTFCVHGGPDGYITGIRGRVQCLSQEDLVKNETQLETQEMIKGKCFLRFPTLPFIPKEPYDVIATDYDNYALVSGAKDTSFVQIYSRTPNPGPEFIEKYKTYLADYGYNPSEIKDTPQDCEVMSNSKLAAMMSMPGMQQALTNQFPDLELKGSVAFDPLTSVFETLKKLVELYFK*