AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548210 MtrunA17_Chr4g0032021 99.485 194 1 0 8 201 363 556 1.62e-128 372
Msa0548210 MtrunA17_Chr4g0039651 72.021 193 54 0 8 200 309 501 1.70e-89 271
Msa0548210 MtrunA17_Chr4g0021771 35.385 195 117 3 8 196 308 499 3.10e-30 116
Msa0548210 MtrunA17_Chr3g0144361 33.673 196 123 1 8 196 293 488 5.20e-30 115
Msa0548210 MtrunA17_Chr7g0214451 34.518 197 118 3 8 196 283 476 1.63e-29 114
Msa0548210 MtrunA17_Chr2g0282031 33.854 192 124 1 8 196 306 497 2.50e-29 113
Msa0548210 MtrunA17_Chr7g0273261 34.694 196 119 4 8 199 47 237 8.38e-29 108
Msa0548210 MtrunA17_Chr4g0036021 34.184 196 122 1 8 196 289 484 1.01e-28 111
Msa0548210 MtrunA17_Chr7g0259471 34.343 198 119 3 8 199 281 473 1.72e-28 110
Msa0548210 MtrunA17_Chr7g0259221 32.828 198 122 3 8 199 283 475 7.33e-28 108
Msa0548210 MtrunA17_Chr1g0213631 33.846 195 123 1 8 196 235 429 7.60e-28 108
Msa0548210 MtrunA17_Chr5g0432581 33.168 202 126 3 8 201 284 484 1.46e-27 108
Msa0548210 MtrunA17_Chr7g0273281 34.872 195 116 3 8 196 303 492 1.60e-27 108
Msa0548210 MtrunA17_Chr4g0034681 32.843 204 124 2 8 201 293 493 2.58e-27 107
Msa0548210 MtrunA17_Chr1g0213611 32.338 201 121 2 8 196 328 525 3.63e-26 104
Msa0548210 MtrunA17_Chr8g0390521 33.673 196 124 1 8 197 274 469 8.92e-26 103
Msa0548210 MtrunA17_Chr6g0457781 35.079 191 118 3 9 196 352 539 8.02e-25 100
Msa0548210 MtrunA17_Chr4g0066581 31.633 196 124 3 8 197 293 484 4.53e-24 98.6
Msa0548210 MtrunA17_Chr8g0373531 32.995 197 123 2 8 196 284 479 1.32e-23 97.4
Msa0548210 MtrunA17_Chr3g0121674 30.882 204 131 2 2 195 79 282 1.57e-23 95.1
Msa0548210 MtrunA17_Chr6g0485661 31.771 192 122 3 8 191 312 502 1.89e-23 97.1
Msa0548210 MtrunA17_Chr7g0250881 34.555 191 119 2 9 196 312 499 3.76e-23 96.3
Msa0548210 MtrunA17_Chr8g0373181 33.668 199 118 4 8 196 288 482 1.82e-22 94.0
Msa0548210 MtrunA17_Chr2g0286721 28.788 198 131 3 8 199 290 483 5.42e-22 92.8
Msa0548210 MtrunA17_Chr1g0205691 33.488 215 123 6 4 201 278 489 7.13e-22 92.4
Msa0548210 MtrunA17_Chr8g0373191 32.367 207 120 4 8 201 260 459 1.13e-21 91.7
Msa0548210 MtrunA17_Chr4g0004821 29.688 192 126 3 13 200 287 473 1.42e-21 91.7
Msa0548210 MtrunA17_Chr1g0205671 32.000 200 125 3 11 201 292 489 1.91e-21 91.3
Msa0548210 MtrunA17_Chr5g0394341 33.498 203 122 7 9 201 290 489 1.32e-20 89.0
Msa0548210 MtrunA17_Chr5g0420841 32.487 197 120 5 11 196 291 485 6.90e-20 86.7
Msa0548210 MtrunA17_Chr6g0486021 32.461 191 122 3 13 200 301 487 1.06e-19 86.3
Msa0548210 MtrunA17_Chr1g0155221 30.500 200 124 5 8 196 290 485 1.07e-19 86.3
Msa0548210 MtrunA17_Chr4g0065311 33.679 193 116 5 12 195 289 478 1.17e-19 86.3
Msa0548210 MtrunA17_Chr1g0205681 33.000 200 123 3 11 201 293 490 1.34e-19 85.9
Msa0548210 MtrunA17_Chr3g0115711 35.897 195 113 5 11 195 290 482 2.54e-18 82.4
Msa0548210 MtrunA17_Chr4g0065351 35.233 193 113 5 12 195 132 321 3.19e-18 81.3
Msa0548210 MtrunA17_Chr4g0065324 34.021 194 114 4 12 195 297 486 3.34e-18 82.0
Msa0548210 MtrunA17_Chr8g0390261 33.679 193 116 4 12 195 296 485 8.32e-18 80.9
Msa0548210 MtrunA17_Chr8g0390141 32.828 198 119 5 8 195 292 485 1.10e-17 80.5
Msa0548210 MtrunA17_Chr3g0078991 30.256 195 126 5 11 197 294 486 2.02e-17 79.7
Msa0548210 MtrunA17_Chr2g0290181 42.609 115 62 1 91 201 444 558 2.08e-17 79.7
Msa0548210 MtrunA17_Chr3g0085971 29.442 197 126 4 11 196 291 485 2.75e-17 79.3
Msa0548210 MtrunA17_Chr6g0486681 31.771 192 121 4 12 195 296 485 2.94e-17 79.3
Msa0548210 MtrunA17_Chr6g0486671 31.771 192 121 4 12 195 296 485 2.94e-17 79.3
Msa0548210 MtrunA17_Chr5g0403831 29.648 199 131 3 8 197 295 493 5.60e-17 78.6
Msa0548210 MtrunA17_Chr3g0119401 29.442 197 127 3 9 199 342 532 1.19e-16 77.4
Msa0548210 MtrunA17_Chr3g0146061 30.500 200 127 3 8 195 524 723 1.30e-16 77.4
Msa0548210 MtrunA17_Chr3g0128171 31.633 196 121 6 11 195 245 438 1.52e-16 77.0
Msa0548210 MtrunA17_Chr3g0115751 32.828 198 115 6 11 195 296 488 2.91e-16 76.3
Msa0548210 MtrunA17_Chr3g0144261 32.338 201 122 5 8 195 514 713 3.94e-16 76.3
Msa0548210 MtrunA17_Chr4g0048411 31.818 198 120 6 11 196 292 486 9.55e-16 74.7
Msa0548210 MtrunA17_Chr8g0370151 31.500 200 125 3 8 195 145 344 1.20e-15 73.9
Msa0548210 MtrunA17_Chr3g0115741 33.333 198 114 6 11 195 294 486 1.43e-15 74.3
Msa0548210 MtrunA17_Chr3g0115721 34.848 198 111 6 11 195 291 483 1.88e-15 73.9
Msa0548210 MtrunA17_Chr7g0257631 32.984 191 118 4 13 195 330 518 2.44e-15 73.6
Msa0548210 MtrunA17_Chr5g0417611 28.283 198 129 5 11 197 293 488 2.85e-15 73.6
Msa0548210 MtrunA17_Chr8g0376631 38.000 100 62 0 98 197 451 550 3.29e-15 73.2
Msa0548210 MtrunA17_Chr5g0404181 36.937 111 66 2 86 196 22 128 3.46e-15 69.3
Msa0548210 MtrunA17_Chr3g0078791 31.156 199 98 7 11 195 237 410 5.44e-15 72.4
Msa0548210 MtrunA17_Chr3g0115781 29.293 198 124 5 11 196 293 486 5.87e-15 72.4
Msa0548210 MtrunA17_Chr3g0115731 31.980 197 118 4 11 195 270 462 8.44e-15 72.0
Msa0548210 MtrunA17_Chr5g0445601 30.890 191 122 4 13 195 296 484 2.33e-14 70.9
Msa0548210 MtrunA17_Chr3g0078971 28.500 200 121 5 11 196 293 484 5.51e-14 69.7
Msa0548210 MtrunA17_Chr3g0128081 30.583 206 121 8 11 201 292 490 6.87e-14 69.3
Msa0548210 MtrunA17_Chr2g0303731 35.789 95 61 0 103 197 457 551 9.79e-14 68.9
Msa0548210 MtrunA17_Chr4g0048051 34.653 202 118 6 11 201 292 490 1.15e-13 68.9
Msa0548210 MtrunA17_Chr5g0434251 35.789 95 61 0 102 196 42 136 1.26e-13 65.9
Msa0548210 MtrunA17_Chr5g0407441 30.000 200 128 3 8 195 506 705 1.76e-13 68.6
Msa0548210 MtrunA17_Chr8g0376611 36.170 94 60 0 103 196 387 480 3.78e-13 67.4
Msa0548210 MtrunA17_Chr5g0419321 28.643 199 128 3 8 193 532 729 4.23e-12 64.3
Msa0548210 MtrunA17_Chr1g0164851 29.442 197 125 5 11 196 291 484 5.16e-12 63.9
Msa0548210 MtrunA17_Chr1g0164871 28.934 197 126 5 11 196 291 484 8.98e-12 63.2
Msa0548210 MtrunA17_Chr2g0290161 40.000 115 65 1 91 201 351 465 1.09e-11 63.2
Msa0548210 MtrunA17_Chr5g0437021 28.708 209 120 8 11 201 291 488 6.01e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548210 AT5G59250.1 87.629 194 24 0 8 201 365 558 6.08e-114 336
Msa0548210 AT3G03090.1 70.466 193 57 0 8 200 311 503 7.20e-88 267
Msa0548210 AT5G17010.1 70.466 193 57 0 8 200 311 503 2.52e-87 266
Msa0548210 AT5G17010.3 70.466 193 57 0 8 200 311 503 2.52e-87 266
Msa0548210 AT5G17010.4 70.466 193 57 0 8 200 311 503 2.52e-87 266
Msa0548210 AT5G17010.2 51.333 150 46 1 51 200 318 440 1.91e-36 132
Msa0548210 AT5G27360.2 37.000 200 115 4 8 201 172 366 3.37e-33 122
Msa0548210 AT5G27360.5 37.000 200 115 4 8 201 172 366 3.37e-33 122
Msa0548210 AT5G27360.1 37.000 200 115 4 8 201 276 470 1.19e-32 122
Msa0548210 AT5G27360.3 37.000 200 115 4 8 201 324 518 1.54e-32 122
Msa0548210 AT5G27350.1 35.000 200 119 4 8 201 272 466 1.16e-30 117
Msa0548210 AT3G18830.1 34.010 197 123 1 8 197 300 496 3.18e-30 116
Msa0548210 AT3G05165.3 32.323 198 123 3 8 199 271 463 1.07e-27 108
Msa0548210 AT3G05165.2 32.323 198 123 3 8 199 271 463 1.07e-27 108
Msa0548210 AT3G05165.1 32.323 198 123 3 8 199 271 463 1.07e-27 108
Msa0548210 AT2G20780.2 33.854 192 124 1 8 196 248 439 1.70e-27 108
Msa0548210 AT2G20780.1 33.854 192 124 1 8 196 306 497 2.17e-27 108
Msa0548210 AT5G18840.1 31.658 199 126 3 9 201 286 480 2.60e-27 108
Msa0548210 AT2G16120.1 32.828 198 125 1 8 197 290 487 1.12e-26 106
Msa0548210 AT2G16130.1 32.828 198 125 1 8 197 290 487 1.51e-26 106
Msa0548210 AT3G05150.1 33.000 200 122 4 8 200 276 470 1.81e-26 105
Msa0548210 AT3G05150.3 33.000 200 122 4 8 200 276 470 1.81e-26 105
Msa0548210 AT3G05150.2 33.000 200 122 4 8 200 276 470 2.59e-26 105
Msa0548210 AT3G05160.3 32.323 198 123 3 8 199 213 405 3.10e-26 104
Msa0548210 AT3G05160.2 32.323 198 123 3 8 199 213 405 3.10e-26 104
Msa0548210 AT4G36670.1 33.838 198 122 2 8 197 281 477 4.78e-26 104
Msa0548210 AT3G05160.1 32.323 198 123 3 8 199 262 454 5.80e-26 103
Msa0548210 AT2G43330.1 34.010 197 123 3 8 197 281 477 8.74e-26 103
Msa0548210 AT1G08930.1 32.143 196 122 4 8 197 299 489 5.21e-25 101
Msa0548210 AT1G08930.2 32.143 196 122 4 8 197 299 489 5.21e-25 101
Msa0548210 AT2G48020.2 30.964 197 123 5 8 197 269 459 6.31e-25 101
Msa0548210 AT2G48020.1 30.964 197 123 5 8 197 269 459 6.31e-25 101
Msa0548210 AT1G54730.2 33.333 198 121 4 8 199 273 465 1.81e-24 100
Msa0548210 AT2G18480.1 32.487 197 125 2 8 197 286 481 1.89e-24 100
Msa0548210 AT1G79820.2 33.333 192 121 2 13 201 305 492 7.62e-23 95.5
Msa0548210 AT1G79820.1 33.333 192 121 2 13 201 305 492 7.62e-23 95.5
Msa0548210 AT1G08900.5 29.231 195 127 4 13 201 229 418 2.97e-22 93.6
Msa0548210 AT1G08900.3 29.231 195 127 4 13 201 263 452 4.47e-22 93.2
Msa0548210 AT1G08900.1 29.231 195 127 4 13 201 271 460 4.68e-22 93.2
Msa0548210 AT1G08900.2 29.231 195 127 4 13 201 271 460 4.68e-22 93.2
Msa0548210 AT1G08890.1 32.308 195 117 6 13 199 273 460 2.76e-21 90.9
Msa0548210 AT5G26340.1 32.020 203 125 5 9 201 291 490 4.31e-21 90.5
Msa0548210 AT1G08920.1 29.293 198 129 4 8 199 273 465 4.87e-21 90.5
Msa0548210 AT1G75220.1 32.000 200 122 4 8 197 289 484 3.58e-20 87.8
Msa0548210 AT3G05155.1 29.146 199 127 4 8 198 265 457 1.36e-19 86.3
Msa0548210 AT1G08920.2 28.293 205 129 5 8 199 273 472 4.39e-19 84.7
Msa0548210 AT5G16150.2 32.474 194 119 3 9 196 352 539 4.68e-19 84.7
Msa0548210 AT5G16150.1 32.474 194 119 3 9 196 352 539 4.68e-19 84.7
Msa0548210 AT5G16150.3 32.474 194 119 3 9 196 352 539 4.68e-19 84.7
Msa0548210 AT4G04750.3 30.769 195 124 3 9 197 324 513 6.79e-19 84.3
Msa0548210 AT3G51490.2 31.500 200 125 4 8 195 517 716 7.11e-19 84.3
Msa0548210 AT4G04750.1 30.769 195 124 3 9 197 280 469 7.78e-19 84.0
Msa0548210 AT4G04750.2 30.769 195 124 3 9 197 280 469 7.78e-19 84.0
Msa0548210 AT3G51490.3 31.500 200 125 4 8 195 467 666 7.84e-19 84.3
Msa0548210 AT4G04760.3 32.308 195 121 4 9 197 217 406 1.42e-18 83.2
Msa0548210 AT4G04760.1 32.308 195 121 4 9 197 276 465 1.67e-18 83.2
Msa0548210 AT1G19450.1 32.512 203 117 7 8 197 290 485 2.36e-18 82.8
Msa0548210 AT5G23270.1 33.005 203 119 7 11 201 294 491 3.18e-18 82.4
Msa0548210 AT1G79820.3 35.329 167 105 1 38 201 278 444 3.30e-18 82.0
Msa0548210 AT4G02050.2 32.323 198 114 5 11 195 294 484 3.70e-18 82.4
Msa0548210 AT4G02050.1 32.323 198 114 5 11 195 294 484 3.70e-18 82.4
Msa0548210 AT1G79820.5 35.329 167 105 1 38 201 216 382 3.72e-18 81.6
Msa0548210 AT3G05165.6 29.167 168 108 3 8 169 271 433 8.24e-18 81.3
Msa0548210 AT4G16480.2 42.857 105 57 1 92 196 456 557 3.07e-17 79.7
Msa0548210 AT4G16480.3 42.857 105 57 1 92 196 456 557 3.07e-17 79.7
Msa0548210 AT4G16480.1 42.857 105 57 1 92 196 456 557 3.07e-17 79.7
Msa0548210 AT1G54730.5 28.571 196 112 4 8 199 273 444 4.40e-17 79.0
Msa0548210 AT1G77210.3 34.314 204 108 6 8 195 143 336 6.75e-17 78.2
Msa0548210 AT3G05960.1 34.483 203 119 7 9 201 286 484 8.55e-17 78.2
Msa0548210 AT1G77210.2 34.314 204 108 6 8 195 292 485 8.77e-17 78.2
Msa0548210 AT1G77210.1 34.314 204 108 6 8 195 292 485 8.77e-17 78.2
Msa0548210 AT5G26250.1 33.663 202 122 6 9 201 287 485 1.10e-16 77.8
Msa0548210 AT3G20460.1 28.796 191 113 4 23 201 309 488 1.85e-16 77.4
Msa0548210 AT4G21480.1 32.487 197 118 6 12 196 291 484 2.84e-16 76.6
Msa0548210 AT3G05400.1 28.205 195 129 4 8 196 267 456 3.03e-16 76.6
Msa0548210 AT3G05400.2 28.205 195 129 4 8 196 247 436 3.19e-16 76.6
Msa0548210 AT1G67300.1 29.688 192 126 3 13 200 304 490 3.25e-16 76.6
Msa0548210 AT1G67300.3 29.688 192 126 3 13 200 304 490 3.25e-16 76.6
Msa0548210 AT1G05030.2 29.231 195 124 3 9 196 275 462 3.45e-16 76.6
Msa0548210 AT1G50310.2 33.163 196 117 6 11 195 151 343 3.55e-16 76.3
Msa0548210 AT3G05165.4 29.299 157 101 2 8 158 271 423 4.36e-16 76.3
Msa0548210 AT3G05165.5 29.299 157 101 2 8 158 271 423 4.36e-16 76.3
Msa0548210 AT1G05030.1 29.231 195 124 3 9 196 327 514 4.54e-16 76.3
Msa0548210 AT1G50310.1 33.163 196 117 6 11 195 294 486 5.07e-16 75.9
Msa0548210 AT1G20840.2 29.524 210 116 4 8 195 516 715 5.77e-16 75.9
Msa0548210 AT1G20840.1 29.524 210 116 4 8 195 516 715 5.77e-16 75.9
Msa0548210 AT1G54730.3 31.646 158 98 3 8 159 273 426 5.98e-16 75.9
Msa0548210 AT3G51490.1 30.102 196 125 4 8 195 517 708 7.52e-16 75.9
Msa0548210 AT4G04760.2 31.088 193 123 5 9 197 276 462 1.04e-15 75.1
Msa0548210 AT2G35740.1 42.857 105 57 1 92 196 455 556 1.13e-15 75.1
Msa0548210 AT1G67300.2 29.534 193 126 4 13 200 304 491 1.22e-15 75.1
Msa0548210 AT1G34580.2 29.231 195 124 5 12 195 246 437 1.30e-15 74.7
Msa0548210 AT1G34580.1 29.231 195 124 5 12 195 296 487 1.69e-15 74.7
Msa0548210 AT1G30220.1 41.237 97 53 1 104 196 457 553 2.10e-15 74.3
Msa0548210 AT3G19940.1 32.000 200 114 7 11 195 293 485 2.16e-15 74.3
Msa0548210 AT4G35300.9 31.000 200 126 3 8 195 513 712 2.30e-15 74.3
Msa0548210 AT4G35300.2 31.000 200 126 3 8 195 513 712 2.30e-15 74.3
Msa0548210 AT4G35300.3 31.000 200 126 3 8 195 513 712 2.30e-15 74.3
Msa0548210 AT4G35300.4 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.8 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.6 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.11 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.1 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.10 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.7 31.000 200 126 3 8 195 523 722 2.49e-15 74.3
Msa0548210 AT4G35300.5 30.808 198 125 3 8 193 326 523 4.17e-15 73.6
Msa0548210 AT1G07340.1 32.057 209 117 7 9 201 288 487 7.30e-15 72.8
Msa0548210 AT1G11260.1 30.457 197 122 6 11 195 292 485 2.23e-14 71.2
Msa0548210 AT5G27360.4 35.385 130 74 3 8 131 276 401 3.21e-13 67.8
Msa0548210 AT1G79820.4 31.884 138 87 2 9 143 301 434 5.28e-13 67.4
Msa0548210 AT3G19930.1 28.934 197 126 5 11 196 291 484 1.33e-12 66.2
Msa0548210 AT3G19930.2 28.934 197 126 5 11 196 291 484 1.33e-12 66.2
Msa0548210 AT1G08920.3 25.949 158 107 3 8 159 273 426 9.21e-12 63.5

Find 156 sgRNAs with CRISPR-Local

Find 549 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGTCACTTCAAGATTT+TGG 0.110124 4_1:+41957425 None:intergenic
TGGTGACAAATGATTGTTTA+TGG 0.216441 4_1:+41964904 None:intergenic
TCCCTCTATGGGGCTCTTCT+TGG 0.227190 4_1:-41963255 Msa0548210:five_prime_UTR
GCATTGGGTGGCTTGCTATT+TGG 0.229582 4_1:-41963585 Msa0548210:five_prime_UTR
TTAGCAGGAAGGCTGCTTTA+TGG 0.247331 4_1:-41962832 Msa0548210:five_prime_UTR
CTTCATCGTCTTGGGGATTC+TGG 0.254886 4_1:-41962638 Msa0548210:intron
GGCTGCCAATTGTTGCTGTT+GGG 0.261289 4_1:-41961506 Msa0548210:CDS
TTGAATTCTTTACTCTTTGA+TGG 0.263452 4_1:+41964975 None:intergenic
TTGCTATTTGGTTATGATAT+TGG 0.265731 4_1:-41963573 Msa0548210:five_prime_UTR
TGCTCCACTTGCTGTGTTAA+TGG 0.274481 4_1:-41962470 Msa0548210:five_prime_UTR
AGCAACCACCGAGGAGATTC+GGG 0.294580 4_1:+41962427 None:intergenic
TTTGAATTGCAGATATCATT+TGG 0.297753 4_1:-41957804 Msa0548210:intron
GCTAAAGTTTCAGTTGTTAT+TGG 0.319773 4_1:-41961846 Msa0548210:CDS
AAAGAACTCTTCATCGTCTT+GGG 0.324920 4_1:-41962646 Msa0548210:five_prime_UTR
GTCCTAAAAGTGGACGATTT+GGG 0.331656 4_1:-41961704 Msa0548210:CDS
TTTGATCAGTTTGTAGAATC+AGG 0.335063 4_1:+41965104 None:intergenic
TGTCCTAAAAGTGGACGATT+TGG 0.336456 4_1:-41961705 Msa0548210:CDS
TGTTGTTGATGATGCCATTT+GGG 0.337414 4_1:+41965036 None:intergenic
ATCTGTTGGTGAATCTTTAG+AGG 0.350880 4_1:+41965151 None:intergenic
GGGCTGCCAATTGTTGCTGT+TGG 0.358412 4_1:-41961507 Msa0548210:CDS
TAGGTCAGTGGTTCCCTCTA+TGG 0.360177 4_1:-41963267 Msa0548210:five_prime_UTR
AAGCAACCACCGAGGAGATT+CGG 0.364539 4_1:+41962426 None:intergenic
CTAATGCAATGGCCGCAAAA+AGG 0.369183 4_1:+41957514 None:intergenic
TTTGCAATTGCTGATTTCAT+TGG 0.369315 4_1:-41963219 Msa0548210:intron
TTATGCAGGTCCCATTCTTC+AGG 0.371687 4_1:-41961994 Msa0548210:intron
AGTGCGAAGTGGGAAGATTT+CGG 0.375828 4_1:+41957758 None:intergenic
CTTTGCATTCTCACCATTGA+AGG 0.377650 4_1:-41957676 Msa0548210:intron
CTGCTTTATGGACTTGGTAT+AGG 0.378257 4_1:-41962820 Msa0548210:five_prime_UTR
TCTGCTTATTATAAATTTCT+CGG 0.392006 4_1:-41961531 Msa0548210:CDS
CAAGTTTCTGCAATGTATAA+AGG 0.395816 4_1:+41962703 None:intergenic
AGGTCAGTGGTTCCCTCTAT+GGG 0.396820 4_1:-41963266 Msa0548210:five_prime_UTR
TTGAATTGCAGATATCATTT+GGG 0.403806 4_1:-41957803 Msa0548210:intron
GGGAGAAGACCTCTGCTGAT+TGG 0.408128 4_1:-41961683 Msa0548210:CDS
CACTACCAAGTACATACAAC+AGG 0.412932 4_1:+41962890 None:intergenic
ACAATTAAGTACCTGAAGAA+TGG 0.413009 4_1:+41961983 None:intergenic
ATTCCACTGCAGGAGTATCT+TGG 0.414752 4_1:-41957555 Msa0548210:intron
AAAAGAACTCTTCATCGTCT+TGG 0.415813 4_1:-41962647 Msa0548210:five_prime_UTR
TTGTTTCCCTGGGCAAACTA+AGG 0.416488 4_1:-41962351 Msa0548210:five_prime_UTR
GCTCCACTTGCTGTGTTAAT+GGG 0.419247 4_1:-41962469 Msa0548210:five_prime_UTR
GGAAGGCTGCTTTATGGACT+TGG 0.423684 4_1:-41962826 Msa0548210:five_prime_UTR
TTCCATTCAGCTTGGTCTTG+TGG 0.424172 4_1:-41963392 Msa0548210:intron
AAGCTGAATGGAAGAAAGAT+TGG 0.431812 4_1:+41963402 None:intergenic
GAACTTGGTGTTCTCTTAGC+AGG 0.432287 4_1:-41962847 Msa0548210:five_prime_UTR
GATACCATCAGCCAACTTAT+CGG 0.433272 4_1:+41957780 None:intergenic
CAAGTTACTCAAATCACATC+AGG 0.433338 4_1:-41957285 Msa0548210:three_prime_UTR
AAACTAAGGGGCCGGCCACT+TGG 0.434562 4_1:-41962337 Msa0548210:five_prime_UTR
GCCGGCCCCTTAGTTTGCCC+AGG 0.434700 4_1:+41962344 None:intergenic
CTTATTCTTGCTGCCCCAAA+TGG 0.435118 4_1:-41965050 Msa0548210:five_prime_UTR
ACATAATTCCAATAGATAAC+AGG 0.438031 4_1:-41962035 Msa0548210:intron
TATGATACATTCACATCAAA+AGG 0.439235 4_1:+41957394 None:intergenic
CTGAGCTTAGCGGTGTCGTT+TGG 0.440109 4_1:-41963426 Msa0548210:five_prime_UTR
GTGTTGTTGATGATGCCATT+TGG 0.449019 4_1:+41965035 None:intergenic
TTATGGACTTGGTATAGGTC+TGG 0.452748 4_1:-41962815 Msa0548210:intron
GGAAAAGGCAATTGTTTCCC+TGG 0.453254 4_1:-41962362 Msa0548210:five_prime_UTR
AACAGCATTGGCAGCGAAGT+TGG 0.454377 4_1:+41957704 None:intergenic
GGGGCTAGTATTATTTCAAC+AGG 0.459642 4_1:-41962182 Msa0548210:intron
AGTTGTTATTGGCTTATTCA+AGG 0.462352 4_1:-41961835 Msa0548210:intron
AACGCCCCAACAGCAACAAT+TGG 0.464360 4_1:+41961501 None:intergenic
GAAGAGTGAGCGGTAAGAAG+TGG 0.468368 4_1:+41964866 None:intergenic
CAATTAAGTACCTGAAGAAT+GGG 0.470930 4_1:+41961984 None:intergenic
GCTAAGAGAACACCAAGTTC+TGG 0.473041 4_1:+41962850 None:intergenic
AATAGCAAGCCACCCAATGC+AGG 0.473802 4_1:+41963588 None:intergenic
CTCAAAGCCGTACAAGGAAA+AGG 0.476933 4_1:-41962403 Msa0548210:five_prime_UTR
AATCTTTCTTCCATTCAGCT+TGG 0.477827 4_1:-41963400 Msa0548210:five_prime_UTR
TATCATTTGGGCCGATAAGT+TGG 0.479888 4_1:-41957791 Msa0548210:CDS
CAAGCGCAGGAGTATTCTGC+TGG 0.483479 4_1:-41964742 Msa0548210:five_prime_UTR
CCCTGGGCAAACTAAGGGGC+CGG 0.484017 4_1:-41962345 Msa0548210:five_prime_UTR
GAAGTCTGCCTATGAAGATC+AGG 0.486030 4_1:-41962269 Msa0548210:exon
CCCACTTCGCACTAGAGGAC+GGG 0.489293 4_1:-41957748 Msa0548210:CDS
TGTTTCCCTGGGCAAACTAA+GGG 0.494124 4_1:-41962350 Msa0548210:five_prime_UTR
TATGATATTGGTGCCACATC+CGG 0.495216 4_1:-41963561 Msa0548210:five_prime_UTR
AAGACCAAGAAAACTTCTCT+TGG 0.498514 4_1:+41964692 None:intergenic
CATGGCTGTTTGTTATCTGT+TGG 0.506259 4_1:+41965137 None:intergenic
ATGTTATATATCTAGAGTGC+TGG 0.506363 4_1:-41961891 Msa0548210:intron
ATTCTTTGTCACCAAGTGGC+CGG 0.507367 4_1:+41962326 None:intergenic
TCTTTACGTTGGTTGCTACC+AGG 0.507374 4_1:-41961475 Msa0548210:intron
CTTGCTGTGTTAATGGGACT+CGG 0.509742 4_1:-41962463 Msa0548210:five_prime_UTR
TGAAATTGTAGCACCGGATG+TGG 0.509979 4_1:+41963548 None:intergenic
GAATCAGGAGTGAGGAATCA+TGG 0.510204 4_1:+41965119 None:intergenic
GCTGCCAATTGTTGCTGTTG+GGG 0.510591 4_1:-41961505 Msa0548210:CDS
CTCGGATTCCTGATCTTCAT+AGG 0.511530 4_1:+41962261 None:intergenic
GCTTTCAGATTAGTACAGTA+GGG 0.511807 4_1:-41962519 Msa0548210:five_prime_UTR
CCTAGTGTTCTGTATTATGC+AGG 0.524477 4_1:-41962008 Msa0548210:CDS
ATTGTATATATCACATGTGT+GGG 0.524514 4_1:-41957362 Msa0548210:three_prime_UTR
CGGTGCTACAATTTCACTGC+AGG 0.525053 4_1:-41963541 Msa0548210:intron
ACTGCCACAGCACCAGAACT+TGG 0.525417 4_1:-41962862 Msa0548210:five_prime_UTR
TTCTGGACAGGTTCAAGCGC+AGG 0.528839 4_1:-41964755 Msa0548210:intron
CTGATGTGATTTGAGTAACT+TGG 0.529187 4_1:+41957286 None:intergenic
CTGCTGATTGGAGGTGTCAG+TGG 0.531307 4_1:-41961671 Msa0548210:CDS
ATCTTCCCACTTCGCACTAG+AGG 0.532990 4_1:-41957753 Msa0548210:CDS
AGAAGACCTCTGCTGATTGG+AGG 0.533132 4_1:-41961680 Msa0548210:CDS
TTGCTTCTCAAAGCCGTACA+AGG 0.534906 4_1:-41962409 Msa0548210:five_prime_UTR
ACTTCTGTCCCAGAGACAAA+AGG 0.535446 4_1:-41957471 Msa0548210:CDS
CGACTCTCCCCGAATCTCCT+CGG 0.539213 4_1:-41962435 Msa0548210:five_prime_UTR
GAAATTTATAATAAGCAGAA+AGG 0.540216 4_1:+41961535 None:intergenic
TACCACAAGACCAAGCTGAA+TGG 0.542358 4_1:+41963390 None:intergenic
CTGCAGTGAAATTGTAGCAC+CGG 0.542977 4_1:+41963542 None:intergenic
CCTGCATAATACAGAACACT+AGG 0.543440 4_1:+41962008 None:intergenic
ATCGGTTGCTGTCCTAAAAG+TGG 0.545652 4_1:-41961714 Msa0548210:CDS
GCCAAGAAGAGCCCCATAGA+GGG 0.547197 4_1:+41963254 None:intergenic
TGCAAAGGTAACAACAGCAT+TGG 0.547945 4_1:+41957692 None:intergenic
CTTATTATAAATTTCTCGGA+GGG 0.549041 4_1:-41961527 Msa0548210:CDS
GAGTACTTACTTGGAATCTA+CGG 0.549078 4_1:+41964837 None:intergenic
TCACAGTCACCTGAGCTTAG+CGG 0.551554 4_1:-41963436 Msa0548210:intron
TCCTAAAAGTGGACGATTTG+GGG 0.552375 4_1:-41961703 Msa0548210:CDS
AAGAACTCTTCATCGTCTTG+GGG 0.554273 4_1:-41962645 Msa0548210:five_prime_UTR
AATGAATTGCAGGCTATGCA+TGG 0.556209 4_1:-41962730 Msa0548210:intron
GCAGCCCTGTTGTATGTACT+TGG 0.557623 4_1:-41962895 Msa0548210:five_prime_UTR
AGAAAGGAGAACTAAAGATA+AGG 0.558234 4_1:+41961551 None:intergenic
AGCCAAGAAGAGCCCCATAG+AGG 0.560695 4_1:+41963253 None:intergenic
CCCGTCCTCTAGTGCGAAGT+GGG 0.561592 4_1:+41957748 None:intergenic
CCACTTCGCACTAGAGGACG+GGG 0.565068 4_1:-41957747 Msa0548210:CDS
AGTCCCATTAACACAGCAAG+TGG 0.566767 4_1:+41962466 None:intergenic
CCGGCCCCTTAGTTTGCCCA+GGG 0.566966 4_1:+41962345 None:intergenic
AGCTTTCAGATTAGTACAGT+AGG 0.568312 4_1:-41962520 Msa0548210:five_prime_UTR
TCCCACTTCGCACTAGAGGA+CGG 0.571506 4_1:-41957749 Msa0548210:CDS
AACACCAAGTTCTGGTGCTG+TGG 0.571690 4_1:+41962858 None:intergenic
CATTGTATATATCACATGTG+TGG 0.573595 4_1:-41957363 Msa0548210:three_prime_UTR
CAAACGACACCGCTAAGCTC+AGG 0.575990 4_1:+41963427 None:intergenic
TCAGATTCTTTGTCACCAAG+TGG 0.579152 4_1:+41962322 None:intergenic
GAAAAGGCAATTGTTTCCCT+GGG 0.582828 4_1:-41962361 Msa0548210:five_prime_UTR
GGGGCGTTGCTTCTTTACGT+TGG 0.589105 4_1:-41961486 Msa0548210:CDS
TGGGCCGATAAGTTGGCTGA+TGG 0.598976 4_1:-41957784 Msa0548210:CDS
CACAAGTGACACTAATGCAA+TGG 0.600703 4_1:+41957503 None:intergenic
AGAGTCCCACGGATTTGTGA+TGG 0.602252 4_1:+41962679 None:intergenic
CCCCGTCCTCTAGTGCGAAG+TGG 0.606766 4_1:+41957747 None:intergenic
TTGGTGTTCTCTTAGCAGGA+AGG 0.607143 4_1:-41962843 Msa0548210:five_prime_UTR
GGGAGGAAGCGACAACTCAT+CGG 0.612912 4_1:-41962919 Msa0548210:five_prime_UTR
CTTTCAGATTAGTACAGTAG+GGG 0.614719 4_1:-41962518 Msa0548210:five_prime_UTR
GCTTCCTGCATCACACACAC+TGG 0.625199 4_1:-41965182 None:intergenic
AGGCAGACTTCAACGAGACA+AGG 0.627144 4_1:+41962281 None:intergenic
ATGGAAGAAGAAATAATGCG+TGG 0.628626 4_1:+41964923 None:intergenic
ATAGCAAGCCACCCAATGCA+GGG 0.629494 4_1:+41963589 None:intergenic
GGTCAGTGGTTCCCTCTATG+GGG 0.636174 4_1:-41963265 Msa0548210:five_prime_UTR
CTTCAATGGTGAGAATGCAA+AGG 0.636883 4_1:+41957677 None:intergenic
GTTTCCCTGGGCAAACTAAG+GGG 0.640750 4_1:-41962349 Msa0548210:five_prime_UTR
TTTCAGATTAGTACAGTAGG+GGG 0.644587 4_1:-41962517 Msa0548210:five_prime_UTR
CTTGTCCATCACAAATCCGT+GGG 0.645682 4_1:-41962684 Msa0548210:five_prime_UTR
AAGCGCAGGAGTATTCTGCT+GGG 0.648733 4_1:-41964741 Msa0548210:five_prime_UTR
ACTTGTCCATCACAAATCCG+TGG 0.650114 4_1:-41962685 Msa0548210:five_prime_UTR
GCTTATTATAAATTTCTCGG+AGG 0.651466 4_1:-41961528 Msa0548210:CDS
TTAATGATACTAGAGTCCCA+CGG 0.652488 4_1:+41962668 None:intergenic
CTCTCCCCGAATCTCCTCGG+TGG 0.653850 4_1:-41962432 Msa0548210:five_prime_UTR
CTATGAAGATCAGGAATCCG+AGG 0.658223 4_1:-41962260 Msa0548210:intron
AGTGGATAAGTGACACGTGT+TGG 0.663963 4_1:+41964884 None:intergenic
TAATGTCAAACATAGGTCAG+TGG 0.676967 4_1:-41963279 Msa0548210:intron
CCTGTAGTTAGTAATGACAT+CGG 0.683946 4_1:-41961732 Msa0548210:intron
CTGACACCTCCAATCAGCAG+AGG 0.685495 4_1:+41961674 None:intergenic
AAGTTACTCAAATCACATCA+GGG 0.687402 4_1:-41957284 Msa0548210:three_prime_UTR
AGTTTGTAGAATCAGGAGTG+AGG 0.687548 4_1:+41965111 None:intergenic
GTTGTTGATGATGCCATTTG+GGG 0.691111 4_1:+41965037 None:intergenic
CACTTCGCACTAGAGGACGG+GGG 0.710664 4_1:-41957746 Msa0548210:CDS
ACGGTTATGAGAAGAGTGAG+CGG 0.731944 4_1:+41964856 None:intergenic
GCAACCACCGAGGAGATTCG+GGG 0.734795 4_1:+41962428 None:intergenic
ACTACCAAGTACATACAACA+GGG 0.734915 4_1:+41962891 None:intergenic
GCTTTGAGAAGCAACCACCG+AGG 0.802099 4_1:+41962418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACATATATATAATCTA+CGG + chr4_1:41960446-41960465 None:intergenic 10.0%
!!! GAAATACTTTTTTTTTTTTT+TGG + chr4_1:41961135-41961154 None:intergenic 10.0%
!! TAAATTTCAATTATTATGCT+GGG - chr4_1:41958214-41958233 Msa0548210:intron 15.0%
!! ATCTATAATTCTATATGTAA+TGG + chr4_1:41959574-41959593 None:intergenic 15.0%
!! TAGAAATGAAAAATCTAAAT+AGG + chr4_1:41960544-41960563 None:intergenic 15.0%
!!! CAAAAATGTCATAATTTTAT+TGG + chr4_1:41961281-41961300 None:intergenic 15.0%
!! ACAAAATTGACAAAAAAAAA+TGG - chr4_1:41961411-41961430 Msa0548210:intron 15.0%
!!! TAATAAGTTGTTTTGATAAA+AGG - chr4_1:41961629-41961648 Msa0548210:intron 15.0%
!!! AATAAGTTGTTTTGATAAAA+GGG - chr4_1:41961630-41961649 Msa0548210:intron 15.0%
!!! AATTTTGTTTATTCATCTTC+TGG - chr4_1:41957577-41957596 Msa0548210:intron 20.0%
!! AATAAATGTATCAAAGTATG+TGG - chr4_1:41957731-41957750 Msa0548210:CDS 20.0%
!! CATGAAGTTAAAACTTATAT+AGG - chr4_1:41957802-41957821 Msa0548210:intron 20.0%
!! ATGTGAAAAACTGTAATAAA+TGG - chr4_1:41957999-41958018 Msa0548210:intron 20.0%
!! TGTGAAAAACTGTAATAAAT+GGG - chr4_1:41958000-41958019 Msa0548210:intron 20.0%
!! CTAAATTTCAATTATTATGC+TGG - chr4_1:41958213-41958232 Msa0548210:intron 20.0%
!! AAATTTCAATTATTATGCTG+GGG - chr4_1:41958215-41958234 Msa0548210:intron 20.0%
!! TTCATATAAGTTATAAGCAA+TGG + chr4_1:41958248-41958267 None:intergenic 20.0%
!! AAACTGTCCAAATTATTATA+AGG - chr4_1:41958461-41958480 Msa0548210:intron 20.0%
!!! ATTAATTTGGATAAAACACT+AGG - chr4_1:41959409-41959428 Msa0548210:intron 20.0%
!!! TTAATTTGGATAAAACACTA+GGG - chr4_1:41959410-41959429 Msa0548210:intron 20.0%
!! TCAATATAACATTAGTAAAG+TGG + chr4_1:41960252-41960271 None:intergenic 20.0%
!! CTTTACTAATGTTATATTGA+AGG - chr4_1:41960252-41960271 Msa0548210:intron 20.0%
!! ATGTTATATTGAAGGAAATA+TGG - chr4_1:41960260-41960279 Msa0548210:intron 20.0%
!! GAAATTTATAATAAGCAGAA+AGG + chr4_1:41960817-41960836 None:intergenic 20.0%
!! TCTGCTTATTATAAATTTCT+CGG - chr4_1:41960818-41960837 Msa0548210:intron 20.0%
!!! ATTATTTTTGCCATAGAATT+CGG - chr4_1:41960978-41960997 Msa0548210:intron 20.0%
!!! AGAATTTTTCATTTATTGCT+AGG + chr4_1:41961069-41961088 None:intergenic 20.0%
!! ATCGATATTAAATTGTGAAT+TGG - chr4_1:41961199-41961218 Msa0548210:intron 20.0%
!!! TTTATTGGTAATGTATCTTA+CGG + chr4_1:41961266-41961285 None:intergenic 20.0%
!! AATCAAATGAAAAAGAAAAG+TGG - chr4_1:41961380-41961399 Msa0548210:intron 20.0%
!! AATTGACAAAAAAAAATGGT+TGG - chr4_1:41961415-41961434 Msa0548210:intron 20.0%
!! AACCCTTAATATTTAGAAAA+GGG - chr4_1:41961554-41961573 Msa0548210:CDS 20.0%
!!! ATCCCTTTTCTAAATATTAA+GGG + chr4_1:41961559-41961578 None:intergenic 20.0%
!!! AATCCCTTTTCTAAATATTA+AGG + chr4_1:41961560-41961579 None:intergenic 20.0%
!!! GATCATATTTTCAAATTACA+TGG + chr4_1:41963151-41963170 None:intergenic 20.0%
!! TGATATTTGACATAAATCTA+CGG + chr4_1:41964525-41964544 None:intergenic 20.0%
!! CTTCAATAAGAAAATAAAAC+TGG + chr4_1:41964716-41964735 None:intergenic 20.0%
! TTGAATTCTTTACTCTTTGA+TGG + chr4_1:41957377-41957396 None:intergenic 25.0%
! AACAAACTTTAGTGTTTGTT+TGG - chr4_1:41957831-41957850 Msa0548210:intron 25.0%
! AACAAACTTTAGTGTTTGTT+TGG - chr4_1:41957831-41957850 Msa0548210:intron 25.0%
! AAAAAAGTGACAGAAACATA+CGG + chr4_1:41957913-41957932 None:intergenic 25.0%
!!! TTTTTTTTATTTCTCTCCTG+AGG - chr4_1:41957939-41957958 Msa0548210:intron 25.0%
! ACTACTAATGTGAAAAACAA+TGG - chr4_1:41958091-41958110 Msa0548210:intron 25.0%
! TGAAAAACAATGGAAAACTT+AGG - chr4_1:41958101-41958120 Msa0548210:intron 25.0%
! ATTTCAATTAAGACCTTGAT+TGG - chr4_1:41958142-41958161 Msa0548210:intron 25.0%
! AATTAGAATGTGTTTGTGTT+TGG + chr4_1:41958543-41958562 None:intergenic 25.0%
!! ACACAAACACATTCTAATTT+TGG - chr4_1:41958544-41958563 Msa0548210:intron 25.0%
!!! TTGCTATTTGGTTATGATAT+TGG - chr4_1:41958776-41958795 Msa0548210:intron 25.0%
!! TCTTATTTACATTATCCAGA+AGG - chr4_1:41959163-41959182 Msa0548210:intron 25.0%
! TGTAAAAATCTTTACACTGA+CGG + chr4_1:41959242-41959261 None:intergenic 25.0%
!!! TTTTCAAGATTTGAAGGAAA+AGG - chr4_1:41959972-41959991 Msa0548210:intron 25.0%
! ACATAATTCCAATAGATAAC+AGG - chr4_1:41960314-41960333 Msa0548210:intron 25.0%
!!! CACTTTTCTTTTAATTGTGT+AGG - chr4_1:41960775-41960794 Msa0548210:intron 25.0%
! CTTATTATAAATTTCTCGGA+GGG - chr4_1:41960822-41960841 Msa0548210:intron 25.0%
! ATAATCAAATACTGTTGAAG+AGG + chr4_1:41960963-41960982 None:intergenic 25.0%
!!! TTTTTTTTTGGTACAAGAGA+GGG + chr4_1:41961123-41961142 None:intergenic 25.0%
!!! TTTTTTTTTTGGTACAAGAG+AGG + chr4_1:41961124-41961143 None:intergenic 25.0%
! AAATGAAAAAGAAAAGTGGT+TGG - chr4_1:41961384-41961403 Msa0548210:intron 25.0%
!!! GATTAAGAAGTGGATTTTAT+CGG + chr4_1:41961531-41961550 None:intergenic 25.0%
! ATAAAATCCACTTCTTAATC+AGG - chr4_1:41961531-41961550 Msa0548210:CDS 25.0%
! GAACCCTTAATATTTAGAAA+AGG - chr4_1:41961553-41961572 Msa0548210:CDS 25.0%
!!! TGGTAACCATTTAATTTTTG+TGG + chr4_1:41963257-41963276 None:intergenic 25.0%
! GAAAAGGAAAATTAGTCATT+GGG + chr4_1:41963558-41963577 None:intergenic 25.0%
! AGAAAAGGAAAATTAGTCAT+TGG + chr4_1:41963559-41963578 None:intergenic 25.0%
! TAGAAATGTTTGAGTCAATA+AGG - chr4_1:41963701-41963720 Msa0548210:intron 25.0%
! AGAAATGTTTGAGTCAATAA+GGG - chr4_1:41963702-41963721 Msa0548210:intron 25.0%
! TTTGACATTCAATACAAAGA+GGG + chr4_1:41963787-41963806 None:intergenic 25.0%
! ATTTGACATTCAATACAAAG+AGG + chr4_1:41963788-41963807 None:intergenic 25.0%
! TAGCTATCATATATCATATG+CGG + chr4_1:41963947-41963966 None:intergenic 25.0%
! TTAGATTTATGTGAGTTGTA+AGG + chr4_1:41964246-41964265 None:intergenic 25.0%
!! TAAAACATTCTAGCTAGTAA+AGG - chr4_1:41961775-41961794 Msa0548210:intron 25.0%
! TATACTATCACATAGTGAAT+CGG - chr4_1:41964349-41964368 Msa0548210:intron 25.0%
! AGGAATTCATCATAATGAAT+CGG - chr4_1:41964372-41964391 Msa0548210:intron 25.0%
! TTTGAATTGCAGATATCATT+TGG - chr4_1:41964545-41964564 Msa0548210:intron 25.0%
! TTGAATTGCAGATATCATTT+GGG - chr4_1:41964546-41964565 Msa0548210:intron 25.0%
! AGAAAATAAAACTGGAAGTA+AGG + chr4_1:41964708-41964727 None:intergenic 25.0%
! TATGATACATTCACATCAAA+AGG + chr4_1:41964958-41964977 None:intergenic 25.0%
! ATTGTATATATCACATGTGT+GGG - chr4_1:41964987-41965006 Msa0548210:five_prime_UTR 25.0%
TTTGATCAGTTTGTAGAATC+AGG + chr4_1:41957248-41957267 None:intergenic 30.0%
TGGTGACAAATGATTGTTTA+TGG + chr4_1:41957448-41957467 None:intergenic 30.0%
AGTAAAGTGACAGAAACATA+CGG + chr4_1:41957694-41957713 None:intergenic 30.0%
! GTCACTTTACTTTCTTTGTA+AGG - chr4_1:41957703-41957722 Msa0548210:CDS 30.0%
!! TGTTTGGACAAACTTTTTCT+TGG - chr4_1:41957872-41957891 Msa0548210:intron 30.0%
! TAGATAAGTGTTTTGTGTGT+AGG - chr4_1:41957970-41957989 Msa0548210:intron 30.0%
GAAAAACTGTAATAAATGGG+AGG - chr4_1:41958003-41958022 Msa0548210:intron 30.0%
! GTATGTGATGTTTTACTACT+TGG - chr4_1:41958043-41958062 Msa0548210:intron 30.0%
! ACATTAGTAGTCACTTTAAG+TGG + chr4_1:41958082-41958101 None:intergenic 30.0%
TTGTTTATCCAAACAATGAG+AGG - chr4_1:41958361-41958380 Msa0548210:intron 30.0%
! GTTACTGTAATTGGTTTATC+AGG - chr4_1:41958383-41958402 Msa0548210:intron 30.0%
AGGTGCTCCTTATAATAATT+TGG + chr4_1:41958471-41958490 None:intergenic 30.0%
AAACAGCATGCTTAATTAAC+TGG + chr4_1:41958721-41958740 None:intergenic 30.0%
!! AGCATGCTGTTTCAAAATTT+AGG - chr4_1:41958729-41958748 Msa0548210:intron 30.0%
! TATGATTTTTGTGTCCTAGT+TGG - chr4_1:41958980-41958999 Msa0548210:intron 30.0%
TAACTGCTAATGTCAAACAT+AGG - chr4_1:41959063-41959082 Msa0548210:intron 30.0%
!! TTTGCAATTGCTGATTTCAT+TGG - chr4_1:41959130-41959149 Msa0548210:intron 30.0%
AATTCATTTCGCTTGTAAGA+TGG + chr4_1:41959607-41959626 None:intergenic 30.0%
CAAGTTTCTGCAATGTATAA+AGG + chr4_1:41959649-41959668 None:intergenic 30.0%
AACTTAAGAGTTTACTGAGT+TGG - chr4_1:41959769-41959788 Msa0548210:intron 30.0%
ACTTAAGAGTTTACTGAGTT+GGG - chr4_1:41959770-41959789 Msa0548210:intron 30.0%
! AAAAGAACCTTTTCCTTGTA+CGG + chr4_1:41959956-41959975 None:intergenic 30.0%
!! AGGTTCTTTTCAAGATTTGA+AGG - chr4_1:41959966-41959985 Msa0548210:intron 30.0%
ATTACGAATGCTTTCAGATT+GGG + chr4_1:41960141-41960160 None:intergenic 30.0%
AATTACGAATGCTTTCAGAT+TGG + chr4_1:41960142-41960161 None:intergenic 30.0%
!! AATCTGAAAGCATTCGTAAT+TGG - chr4_1:41960141-41960160 Msa0548210:intron 30.0%
AATAACTCATTGCACTGAAA+TGG + chr4_1:41960198-41960217 None:intergenic 30.0%
CAATTAAGTACCTGAAGAAT+GGG + chr4_1:41960368-41960387 None:intergenic 30.0%
ACAATTAAGTACCTGAAGAA+TGG + chr4_1:41960369-41960388 None:intergenic 30.0%
! ATGTTATATATCTAGAGTGC+TGG - chr4_1:41960458-41960477 Msa0548210:intron 30.0%
GCTAAAGTTTCAGTTGTTAT+TGG - chr4_1:41960503-41960522 Msa0548210:intron 30.0%
!! AGTTGTTATTGGCTTATTCA+AGG - chr4_1:41960514-41960533 Msa0548210:intron 30.0%
AGAAAGGAGAACTAAAGATA+AGG + chr4_1:41960801-41960820 None:intergenic 30.0%
GCTTATTATAAATTTCTCGG+AGG - chr4_1:41960821-41960840 Msa0548210:intron 30.0%
!!! TTTTTTTTGGTACAAGAGAG+GGG + chr4_1:41961122-41961141 None:intergenic 30.0%
GTAACATAATAGAGAGAATG+AGG - chr4_1:41961600-41961619 Msa0548210:intron 30.0%
ATAATAATACTCCCAAGTAG+TGG - chr4_1:41961915-41961934 Msa0548210:intron 30.0%
!!! ATCTTGGCAGAATTTTAGTT+GGG - chr4_1:41962213-41962232 Msa0548210:intron 30.0%
! TTGTGAATTGAAGCATCTTT+GGG - chr4_1:41962250-41962269 Msa0548210:intron 30.0%
TCAAGGTCTTAGACAAAATT+GGG + chr4_1:41962300-41962319 None:intergenic 30.0%
TTCAAGGTCTTAGACAAAAT+TGG + chr4_1:41962301-41962320 None:intergenic 30.0%
!! ATTTTGTCTAAGACCTTGAA+AGG - chr4_1:41962301-41962320 Msa0548210:five_prime_UTR 30.0%
GCTTAAATTCCATCTATTAC+AGG + chr4_1:41962476-41962495 None:intergenic 30.0%
AGAGAAACTAAGAGAAATGA+GGG - chr4_1:41962542-41962561 Msa0548210:intron 30.0%
ATGAGAAATCAGAATGAAGA+GGG + chr4_1:41962614-41962633 None:intergenic 30.0%
TATGAGAAATCAGAATGAAG+AGG + chr4_1:41962615-41962634 None:intergenic 30.0%
GTCAGTTTAGCTAATTTAGT+GGG + chr4_1:41962678-41962697 None:intergenic 30.0%
TGTCAGTTTAGCTAATTTAG+TGG + chr4_1:41962679-41962698 None:intergenic 30.0%
ATAAACTTACCTTATCTTCC+GGG + chr4_1:41962838-41962857 None:intergenic 30.0%
CATAAACTTACCTTATCTTC+CGG + chr4_1:41962839-41962858 None:intergenic 30.0%
GGAAGATAAGGTAAGTTTAT+GGG - chr4_1:41962838-41962857 Msa0548210:five_prime_UTR 30.0%
GAAGATAAGGTAAGTTTATG+GGG - chr4_1:41962839-41962858 Msa0548210:five_prime_UTR 30.0%
! ACAGTTTTTCACTTTACAAG+GGG + chr4_1:41963073-41963092 None:intergenic 30.0%
! GACAGTTTTTCACTTTACAA+GGG + chr4_1:41963074-41963093 None:intergenic 30.0%
! AGAATTGGCTTAGAAATGTA+GGG - chr4_1:41963095-41963114 Msa0548210:intron 30.0%
ATATGCTCATTTCATTCCTT+TGG + chr4_1:41963215-41963234 None:intergenic 30.0%
! TAATTTTTGTGGTTGTCGAT+AGG + chr4_1:41963246-41963265 None:intergenic 30.0%
CGACAACCACAAAAATTAAA+TGG - chr4_1:41963248-41963267 Msa0548210:five_prime_UTR 30.0%
TATTTGGACTGATATCAGTA+CGG + chr4_1:41963308-41963327 None:intergenic 30.0%
ATATCAGTCCAAATAAGTGA+AGG - chr4_1:41963313-41963332 Msa0548210:intron 30.0%
TCCAAATAAGTGAAGGAATT+GGG - chr4_1:41963320-41963339 Msa0548210:intron 30.0%
TAAACCTTTCCAAAAGAAGA+GGG - chr4_1:41963435-41963454 Msa0548210:intron 30.0%
TCAAACTGCATATTCTACAT+TGG + chr4_1:41963522-41963541 None:intergenic 30.0%
! TGAATTTAGAGTGTGACTAT+GGG - chr4_1:41963602-41963621 Msa0548210:intron 30.0%
AAATTCAAAGCCCATCAATT+TGG - chr4_1:41963804-41963823 Msa0548210:intron 30.0%
! ATTTGCTAATGTAGGCAATT+GGG - chr4_1:41964015-41964034 Msa0548210:intron 30.0%
GTAACATAATAGAGAGAATG+AGG - chr4_1:41961600-41961619 Msa0548210:intron 30.0%
ATTGATCCTTTGCCTTATAA+AGG - chr4_1:41964154-41964173 Msa0548210:intron 30.0%
TTGATCCTTTGCCTTATAAA+GGG - chr4_1:41964155-41964174 Msa0548210:intron 30.0%
TTGTAATCAGTCCCTTTATA+AGG + chr4_1:41964169-41964188 None:intergenic 30.0%
TATAAAGGGACTGATTACAA+CGG - chr4_1:41964169-41964188 Msa0548210:intron 30.0%
AATTCATCATAATGAATCGG+AGG - chr4_1:41964375-41964394 Msa0548210:intron 30.0%
AAGGAATCAAAAACCTTCAA+TGG + chr4_1:41964689-41964708 None:intergenic 30.0%
TAAATTTGTCTGAATGCTGT+AGG - chr4_1:41964752-41964771 Msa0548210:intron 30.0%
CATTGTATATATCACATGTG+TGG - chr4_1:41964986-41965005 Msa0548210:five_prime_UTR 30.0%
AAGTTACTCAAATCACATCA+GGG - chr4_1:41965065-41965084 Msa0548210:five_prime_UTR 30.0%
! ATCTGTTGGTGAATCTTTAG+AGG + chr4_1:41957201-41957220 None:intergenic 35.0%
!! TGTTGTTGATGATGCCATTT+GGG + chr4_1:41957316-41957335 None:intergenic 35.0%
ATGGAAGAAGAAATAATGCG+TGG + chr4_1:41957429-41957448 None:intergenic 35.0%
GAGTACTTACTTGGAATCTA+CGG + chr4_1:41957515-41957534 None:intergenic 35.0%
TGTTTATTCATCTTCTGGAC+AGG - chr4_1:41957582-41957601 Msa0548210:intron 35.0%
AAGACCAAGAAAACTTCTCT+TGG + chr4_1:41957660-41957679 None:intergenic 35.0%
CTTATCTAATTCAATGCCTC+AGG + chr4_1:41957958-41957977 None:intergenic 35.0%
ACATGTTATGGAACCAATCA+AGG + chr4_1:41958158-41958177 None:intergenic 35.0%
TTTCAGTTCTGCACATGTTA+TGG + chr4_1:41958170-41958189 None:intergenic 35.0%
GTATGCAAGAGTAAGATTCT+TGG - chr4_1:41958190-41958209 Msa0548210:intron 35.0%
TACAGTAACCTCTCATTGTT+TGG + chr4_1:41958372-41958391 None:intergenic 35.0%
CAATGAGAGGTTACTGTAAT+TGG - chr4_1:41958374-41958393 Msa0548210:intron 35.0%
ACCACTCCAACAAAGAAAAT+GGG + chr4_1:41958496-41958515 None:intergenic 35.0%
TACCACTCCAACAAAGAAAA+TGG + chr4_1:41958497-41958516 None:intergenic 35.0%
ATGTGTTTGTGTTTGGTCAA+TGG + chr4_1:41958536-41958555 None:intergenic 35.0%
TTAACTGGTAAACATAGACC+AGG + chr4_1:41958706-41958725 None:intergenic 35.0%
AAGCTGAATGGAAGAAAGAT+TGG + chr4_1:41958950-41958969 None:intergenic 35.0%
AATCTTTCTTCCATTCAGCT+TGG - chr4_1:41958949-41958968 Msa0548210:intron 35.0%
! AAGCAAGATGTTTTCCAACT+AGG + chr4_1:41958997-41959016 None:intergenic 35.0%
TAATGTCAAACATAGGTCAG+TGG - chr4_1:41959070-41959089 Msa0548210:intron 35.0%
! AGCTTAATTTTGTACGCTGT+CGG + chr4_1:41959376-41959395 None:intergenic 35.0%
ATTTGGATAAAACACTAGGG+AGG - chr4_1:41959413-41959432 Msa0548210:intron 35.0%
ACTACCAAGTACATACAACA+GGG + chr4_1:41959461-41959480 None:intergenic 35.0%
TTACAAGCGAAATGAATTGC+AGG - chr4_1:41959609-41959628 Msa0548210:intron 35.0%
TTAATGATACTAGAGTCCCA+CGG + chr4_1:41959684-41959703 None:intergenic 35.0%
AAAAGAACTCTTCATCGTCT+TGG - chr4_1:41959702-41959721 Msa0548210:intron 35.0%
AAAGAACTCTTCATCGTCTT+GGG - chr4_1:41959703-41959722 Msa0548210:intron 35.0%
CTTAAGAGTTTACTGAGTTG+GGG - chr4_1:41959771-41959790 Msa0548210:intron 35.0%
!! ATGCAGTTGGGTTATTTTGT+GGG - chr4_1:41959805-41959824 Msa0548210:intron 35.0%
AGCTTTCAGATTAGTACAGT+AGG - chr4_1:41959829-41959848 Msa0548210:intron 35.0%
GCTTTCAGATTAGTACAGTA+GGG - chr4_1:41959830-41959849 Msa0548210:intron 35.0%
CTTTCAGATTAGTACAGTAG+GGG - chr4_1:41959831-41959850 Msa0548210:intron 35.0%
TTTCAGATTAGTACAGTAGG+GGG - chr4_1:41959832-41959851 Msa0548210:intron 35.0%
!! AGTTTCTTAGAGGTGTTTCA+GGG - chr4_1:41960114-41960133 Msa0548210:intron 35.0%
!! TGAAAGCATTCGTAATTGGT+GGG - chr4_1:41960145-41960164 Msa0548210:intron 35.0%
! TAGGTTGACCTGTTATCTAT+TGG + chr4_1:41960325-41960344 None:intergenic 35.0%
CCTGTAGTTAGTAATGACAT+CGG - chr4_1:41960617-41960636 Msa0548210:intron 35.0%
TCTGACAAGAAATAGTAGCA+AGG + chr4_1:41960921-41960940 None:intergenic 35.0%
ATTCTACTGTCCGAATTCTA+TGG + chr4_1:41960991-41961010 None:intergenic 35.0%
AGAATTCGGACAGTAGAATA+TGG - chr4_1:41960992-41961011 Msa0548210:intron 35.0%
GAATTCGGACAGTAGAATAT+GGG - chr4_1:41960993-41961012 Msa0548210:intron 35.0%
TGCATCAACACTAAGGAAAA+TGG + chr4_1:41961159-41961178 None:intergenic 35.0%
TTTAAGCTGCATCAACACTA+AGG + chr4_1:41961166-41961185 None:intergenic 35.0%
! GTTGGTCATGCTAAGTTTTT+AGG - chr4_1:41961433-41961452 Msa0548210:intron 35.0%
GTGATTCATAAGAACGAATC+AGG - chr4_1:41961458-41961477 Msa0548210:intron 35.0%
ATTGATCCTTTGCCTTGTAA+AGG - chr4_1:41961666-41961685 Msa0548210:intron 35.0%
TTGATCCTTTGCCTTGTAAA+GGG - chr4_1:41961667-41961686 Msa0548210:CDS 35.0%
TTGTAATCAGTCCCTTTACA+AGG + chr4_1:41961681-41961700 None:intergenic 35.0%
TGTAAAGGGACTGATTACAA+CGG - chr4_1:41961681-41961700 Msa0548210:CDS 35.0%
GTCAAATGAAGAGGTTATGA+TGG + chr4_1:41961713-41961732 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG + chr4_1:41962003-41962022 None:intergenic 35.0%
!! GATCTTGGCAGAATTTTAGT+TGG - chr4_1:41962212-41962231 Msa0548210:intron 35.0%
! GTTGTGAATTGAAGCATCTT+TGG - chr4_1:41962249-41962268 Msa0548210:intron 35.0%
CAAGGTCTTAGACAAAATTG+GGG + chr4_1:41962299-41962318 None:intergenic 35.0%
TAAGTATTACGGTCCTTTCA+AGG + chr4_1:41962317-41962336 None:intergenic 35.0%
TTGAAAGGACCGTAATACTT+AGG - chr4_1:41962316-41962335 Msa0548210:five_prime_UTR 35.0%
AAACTCCTGCCTAAGTATTA+CGG + chr4_1:41962328-41962347 None:intergenic 35.0%
AGTGATGAGAATTTCTCTGT+TGG + chr4_1:41962415-41962434 None:intergenic 35.0%
TCAGAACAGAATGAAACAAC+AGG + chr4_1:41962452-41962471 None:intergenic 35.0%
CAGAGAAACTAAGAGAAATG+AGG - chr4_1:41962541-41962560 Msa0548210:five_prime_UTR 35.0%
CGGAAGATAAGGTAAGTTTA+TGG - chr4_1:41962837-41962856 Msa0548210:five_prime_UTR 35.0%
TGTCCATATACTACCTCAAA+CGG - chr4_1:41962868-41962887 Msa0548210:five_prime_UTR 35.0%
! AACCATTTGGACCAATTTTG+AGG - chr4_1:41962946-41962965 Msa0548210:intron 35.0%
! GGACAGTTTTTCACTTTACA+AGG + chr4_1:41963075-41963094 None:intergenic 35.0%
AGTGAAAAACTGTCCAGAAT+TGG - chr4_1:41963080-41963099 Msa0548210:intron 35.0%
CTACATTTCTAAGCCAATTC+TGG + chr4_1:41963096-41963115 None:intergenic 35.0%
! CAGAATTGGCTTAGAAATGT+AGG - chr4_1:41963094-41963113 Msa0548210:intron 35.0%
ATTAAATGGTTACCAGACGA+AGG - chr4_1:41963262-41963281 Msa0548210:five_prime_UTR 35.0%
TTAAATGGTTACCAGACGAA+GGG - chr4_1:41963263-41963282 Msa0548210:five_prime_UTR 35.0%
ATCAGTACGGACTTTATTGA+AGG + chr4_1:41963295-41963314 None:intergenic 35.0%
GTCCAAATAAGTGAAGGAAT+TGG - chr4_1:41963319-41963338 Msa0548210:intron 35.0%
TCCCAATTCCTTCACTTATT+TGG + chr4_1:41963324-41963343 None:intergenic 35.0%
CTAAACCTTTCCAAAAGAAG+AGG - chr4_1:41963434-41963453 Msa0548210:intron 35.0%
AAACCTTTCCAAAAGAAGAG+GGG - chr4_1:41963436-41963455 Msa0548210:intron 35.0%
GTCACACTCTAAATTCACTT+GGG + chr4_1:41963599-41963618 None:intergenic 35.0%
AGTCACACTCTAAATTCACT+TGG + chr4_1:41963600-41963619 None:intergenic 35.0%
! GTGAATTTAGAGTGTGACTA+TGG - chr4_1:41963601-41963620 Msa0548210:five_prime_UTR 35.0%
TTCAATGTCCGAAATGAGTT+CGG - chr4_1:41963630-41963649 Msa0548210:intron 35.0%
!! AAAGAGCATTAAGCACATTC+TGG + chr4_1:41963869-41963888 None:intergenic 35.0%
ATCATATGCGGTGCAAAAAT+GGG + chr4_1:41963935-41963954 None:intergenic 35.0%
TATCATATGCGGTGCAAAAA+TGG + chr4_1:41963936-41963955 None:intergenic 35.0%
!! ACCCAAAGATTTGCTAATGT+AGG - chr4_1:41964007-41964026 Msa0548210:intron 35.0%
GCCTACATTAGCAAATCTTT+GGG + chr4_1:41964011-41964030 None:intergenic 35.0%
TGCCTACATTAGCAAATCTT+TGG + chr4_1:41964012-41964031 None:intergenic 35.0%
!! GATTTGCTAATGTAGGCAAT+TGG - chr4_1:41964014-41964033 Msa0548210:intron 35.0%
ATCTTCTGAACTCAACGAAT+AGG + chr4_1:41961577-41961596 None:intergenic 35.0%
TCCATAACAGATACACACTA+GGG - chr4_1:41964415-41964434 Msa0548210:intron 35.0%
! TTGCAAGACATTGATAACCA+CGG - chr4_1:41964487-41964506 Msa0548210:intron 35.0%
! GAACCTTTTTCTCCTTTTTG+CGG - chr4_1:41964823-41964842 Msa0548210:intron 35.0%
CTGATGTGATTTGAGTAACT+TGG + chr4_1:41965066-41965085 None:intergenic 35.0%
CAAGTTACTCAAATCACATC+AGG - chr4_1:41965064-41965083 Msa0548210:five_prime_UTR 35.0%
!! CATGGCTGTTTGTTATCTGT+TGG + chr4_1:41957215-41957234 None:intergenic 40.0%
AGTTTGTAGAATCAGGAGTG+AGG + chr4_1:41957241-41957260 None:intergenic 40.0%
!! GTTGTTGATGATGCCATTTG+GGG + chr4_1:41957315-41957334 None:intergenic 40.0%
!! GTGTTGTTGATGATGCCATT+TGG + chr4_1:41957317-41957336 None:intergenic 40.0%
CCAGTTTCTGAGTACTTACT+TGG + chr4_1:41957524-41957543 None:intergenic 40.0%
CCAAGTAAGTACTCAGAAAC+TGG - chr4_1:41957521-41957540 Msa0548210:CDS 40.0%
! CTGACCAAGAGAAGTTTTCT+TGG - chr4_1:41957653-41957672 Msa0548210:intron 40.0%
!! CCTTGAGTTGAGAATGTACT+GGG - chr4_1:41958413-41958432 Msa0548210:intron 40.0%
!! CTTGAGTTGAGAATGTACTG+GGG - chr4_1:41958414-41958433 Msa0548210:intron 40.0%
! ACCTTGCCCATTTTCTTTGT+TGG - chr4_1:41958487-41958506 Msa0548210:intron 40.0%
TCCAACAAAGAAAATGGGCA+AGG + chr4_1:41958491-41958510 None:intergenic 40.0%
!! AATACTTTGCTTCTAGAGCG+AGG - chr4_1:41958571-41958590 Msa0548210:intron 40.0%
!! ATACTTTGCTTCTAGAGCGA+GGG - chr4_1:41958572-41958591 Msa0548210:intron 40.0%
!! CTTTGAAATGTATGAGCTCC+TGG - chr4_1:41958685-41958704 Msa0548210:intron 40.0%
!! TAGGTTTGTTTTCCCTGCAT+TGG - chr4_1:41958748-41958767 Msa0548210:intron 40.0%
!! AGGTTTGTTTTCCCTGCATT+GGG - chr4_1:41958749-41958768 Msa0548210:intron 40.0%
!! TATGATATTGGTGCCACATC+CGG - chr4_1:41958788-41958807 Msa0548210:intron 40.0%
CACTACCAAGTACATACAAC+AGG + chr4_1:41959462-41959481 None:intergenic 40.0%
! CTGCTTTATGGACTTGGTAT+AGG - chr4_1:41959529-41959548 Msa0548210:intron 40.0%
! TTATGGACTTGGTATAGGTC+TGG - chr4_1:41959534-41959553 Msa0548210:intron 40.0%
AATGAATTGCAGGCTATGCA+TGG - chr4_1:41959619-41959638 Msa0548210:intron 40.0%
AAGAACTCTTCATCGTCTTG+GGG - chr4_1:41959704-41959723 Msa0548210:intron 40.0%
GACTGAACTATCATGCAGTT+GGG - chr4_1:41959793-41959812 Msa0548210:intron 40.0%
!! CATGCAGTTGGGTTATTTTG+TGG - chr4_1:41959804-41959823 Msa0548210:intron 40.0%
GAAAAGGCAATTGTTTCCCT+GGG - chr4_1:41959988-41960007 Msa0548210:intron 40.0%
TCAGATTCTTTGTCACCAAG+TGG + chr4_1:41960030-41960049 None:intergenic 40.0%
!! GAGTTTCTTAGAGGTGTTTC+AGG - chr4_1:41960113-41960132 Msa0548210:intron 40.0%
!! CTGAAAGCATTCGTAATTGG+TGG - chr4_1:41960144-41960163 Msa0548210:intron 40.0%
!! GAAAGCATTCGTAATTGGTG+GGG - chr4_1:41960146-41960165 Msa0548210:intron 40.0%
! AAAGCATTCGTAATTGGTGG+GGG - chr4_1:41960147-41960166 Msa0548210:intron 40.0%
! GGGGCTAGTATTATTTCAAC+AGG - chr4_1:41960167-41960186 Msa0548210:intron 40.0%
CCTGCATAATACAGAACACT+AGG + chr4_1:41960344-41960363 None:intergenic 40.0%
CCTAGTGTTCTGTATTATGC+AGG - chr4_1:41960341-41960360 Msa0548210:intron 40.0%
CCGATGTCATTACTAACTAC+AGG + chr4_1:41960620-41960639 None:intergenic 40.0%
TGTCCTAAAAGTGGACGATT+TGG - chr4_1:41960644-41960663 Msa0548210:intron 40.0%
GTCCTAAAAGTGGACGATTT+GGG - chr4_1:41960645-41960664 Msa0548210:intron 40.0%
TCCTAAAAGTGGACGATTTG+GGG - chr4_1:41960646-41960665 Msa0548210:intron 40.0%
ATGACCAGAAAACCATTACC+TGG + chr4_1:41960895-41960914 None:intergenic 40.0%
!! GGTAATGGTTTTCTGGTCAT+TGG - chr4_1:41960895-41960914 Msa0548210:intron 40.0%
GAGTAGAGAGGTCTTTCAAT+CGG + chr4_1:41961031-41961050 None:intergenic 40.0%
ACCTCTCTACTCCTCAAAAA+GGG - chr4_1:41961039-41961058 Msa0548210:intron 40.0%
AAGGGTTCCTGATTAAGAAG+TGG + chr4_1:41961541-41961560 None:intergenic 40.0%
! AAGGATGCTCTTTAAGGAGA+GGG + chr4_1:41961855-41961874 None:intergenic 40.0%
!! TTTCCTACTTTTCACCCTTG+AGG + chr4_1:41961880-41961899 None:intergenic 40.0%
GAAAAGTAGGAAAACGTTGC+AGG - chr4_1:41961887-41961906 Msa0548210:intron 40.0%
ATACTCCCAAGTAGTGGTAT+AGG - chr4_1:41961921-41961940 Msa0548210:intron 40.0%
! ATTCTCTCTGGTGCCAATTT+AGG - chr4_1:41961987-41962006 Msa0548210:intron 40.0%
GAAAGATACTCCACCTGAAA+TGG + chr4_1:41962062-41962081 None:intergenic 40.0%
AATTGCTGCTACCAAAGTTC+TGG + chr4_1:41962092-41962111 None:intergenic 40.0%
! GTGCATTTTAGACAGGAAGA+TGG + chr4_1:41962128-41962147 None:intergenic 40.0%
! CTTCCTGTCTAAAATGCACT+CGG - chr4_1:41962129-41962148 Msa0548210:intron 40.0%
! TTATGGACTGTTGCTGTGTT+GGG - chr4_1:41962190-41962209 Msa0548210:intron 40.0%
! TGTTCTGAGCCTGTAATAGA+TGG - chr4_1:41962464-41962483 Msa0548210:five_prime_UTR 40.0%
AGAGAGACCAAGAGAAATGA+GGG - chr4_1:41962576-41962595 Msa0548210:intron 40.0%
!! GTTTTGACCCTCATTTCTCT+TGG + chr4_1:41962586-41962605 None:intergenic 40.0%
! GAGGGTCAATCTTTTGTCAA+TGG + chr4_1:41962800-41962819 None:intergenic 40.0%
GGGTGAATCAACGAATATGA+GGG + chr4_1:41962818-41962837 None:intergenic 40.0%
!! CTCATATTCGTTGATTCACC+CGG - chr4_1:41962817-41962836 Msa0548210:five_prime_UTR 40.0%
TAAGGTAAGTTTATGGGGAG+AGG - chr4_1:41962844-41962863 Msa0548210:five_prime_UTR 40.0%
! ACTCCGTTTGAGGTAGTATA+TGG + chr4_1:41962874-41962893 None:intergenic 40.0%
ATATACTACCTCAAACGGAG+TGG - chr4_1:41962873-41962892 Msa0548210:five_prime_UTR 40.0%
AATTCAATCCACTCCGTTTG+AGG + chr4_1:41962884-41962903 None:intergenic 40.0%
! AATGGTTATCACTGGCTGAA+TGG + chr4_1:41962933-41962952 None:intergenic 40.0%
TTCAGCCAGTGATAACCATT+TGG - chr4_1:41962933-41962952 Msa0548210:intron 40.0%
TTGGTCCAAATGGTTATCAC+TGG + chr4_1:41962941-41962960 None:intergenic 40.0%
AGCCTCAAAATTGGTCCAAA+TGG + chr4_1:41962951-41962970 None:intergenic 40.0%
CTTATCTTCGATGCTGTGTT+CGG + chr4_1:41962977-41962996 None:intergenic 40.0%
! GTTTTTCACTTTACAAGGGG+TGG + chr4_1:41963070-41963089 None:intergenic 40.0%
TAAATGGTTACCAGACGAAG+GGG - chr4_1:41963264-41963283 Msa0548210:five_prime_UTR 40.0%
ATAAGTGAAGGAATTGGGAG+TGG - chr4_1:41963325-41963344 Msa0548210:intron 40.0%
! GAATTAAGCCCCTCTTCTTT+TGG + chr4_1:41963447-41963466 None:intergenic 40.0%
CAGTAATATCTCGACCAGAA+TGG - chr4_1:41963473-41963492 Msa0548210:intron 40.0%
TCTAAATTCACTTGGGTACG+AGG + chr4_1:41963592-41963611 None:intergenic 40.0%
GTCCATAACCGAACTCATTT+CGG + chr4_1:41963641-41963660 None:intergenic 40.0%
GAAATGAGTTCGGTTATGGA+CGG - chr4_1:41963640-41963659 Msa0548210:intron 40.0%
!! GCTCTTTTGATCAGCTTTGA+TGG - chr4_1:41963882-41963901 Msa0548210:intron 40.0%
TCATATGCGGTGCAAAAATG+GGG + chr4_1:41963934-41963953 None:intergenic 40.0%
GTGTTTGTCTTGCATCAAGA+CGG - chr4_1:41964037-41964056 Msa0548210:intron 40.0%
TCAGTCCCTTTATAAGGCAA+AGG + chr4_1:41964163-41964182 None:intergenic 40.0%
GTCAAATGAAGAGGTCATGA+TGG + chr4_1:41964201-41964220 None:intergenic 40.0%
TGTTGAGCTGTCAAATGAAG+AGG + chr4_1:41964210-41964229 None:intergenic 40.0%
ACTATCACATAGTGAATCGG+AGG - chr4_1:41964352-41964371 Msa0548210:intron 40.0%
ATCATAATGAATCGGAGGTC+AGG - chr4_1:41964380-41964399 Msa0548210:intron 40.0%
GTCCATAACAGATACACACT+AGG - chr4_1:41964414-41964433 Msa0548210:intron 40.0%
TCCCTAGTGTGTATCTGTTA+TGG + chr4_1:41964419-41964438 None:intergenic 40.0%
TACGGTAATACTTTAAGCCG+TGG + chr4_1:41964507-41964526 None:intergenic 40.0%
TATCATTTGGGCCGATAAGT+TGG - chr4_1:41964558-41964577 Msa0548210:intron 40.0%
GATACCATCAGCCAACTTAT+CGG + chr4_1:41964572-41964591 None:intergenic 40.0%
TGCAAAGGTAACAACAGCAT+TGG + chr4_1:41964660-41964679 None:intergenic 40.0%
CTTCAATGGTGAGAATGCAA+AGG + chr4_1:41964675-41964694 None:intergenic 40.0%
CTTTGCATTCTCACCATTGA+AGG - chr4_1:41964673-41964692 Msa0548210:intron 40.0%
CACAAGTGACACTAATGCAA+TGG + chr4_1:41964849-41964868 None:intergenic 40.0%
!! CTGCTGTCACTTCAAGATTT+TGG + chr4_1:41964927-41964946 None:intergenic 40.0%
GAATCAGGAGTGAGGAATCA+TGG + chr4_1:41957233-41957252 None:intergenic 45.0%
CTTATTCTTGCTGCCCCAAA+TGG - chr4_1:41957299-41957318 Msa0548210:three_prime_UTR 45.0%
AGTGGATAAGTGACACGTGT+TGG + chr4_1:41957468-41957487 None:intergenic 45.0%
ACGGTTATGAGAAGAGTGAG+CGG + chr4_1:41957496-41957515 None:intergenic 45.0%
!! GCCTTGAGTTGAGAATGTAC+TGG - chr4_1:41958412-41958431 Msa0548210:intron 45.0%
CCCAGTACATTCTCAACTCA+AGG + chr4_1:41958416-41958435 None:intergenic 45.0%
! GCCCATTTTCTTTGTTGGAG+TGG - chr4_1:41958492-41958511 Msa0548210:intron 45.0%
!! TTTGTTTTCCCTGCATTGGG+TGG - chr4_1:41958752-41958771 Msa0548210:intron 45.0%
! TGAAATTGTAGCACCGGATG+TGG + chr4_1:41958804-41958823 None:intergenic 45.0%
CTGCAGTGAAATTGTAGCAC+CGG + chr4_1:41958810-41958829 None:intergenic 45.0%
!! TTCCATTCAGCTTGGTCTTG+TGG - chr4_1:41958957-41958976 Msa0548210:intron 45.0%
TACCACAAGACCAAGCTGAA+TGG + chr4_1:41958962-41958981 None:intergenic 45.0%
GTAGTTCAGTTTCTGCCTTC+TGG + chr4_1:41959181-41959200 None:intergenic 45.0%
GCTAAGAGAACACCAAGTTC+TGG + chr4_1:41959502-41959521 None:intergenic 45.0%
!! GAACTTGGTGTTCTCTTAGC+AGG - chr4_1:41959502-41959521 Msa0548210:intron 45.0%
! TTGGTGTTCTCTTAGCAGGA+AGG - chr4_1:41959506-41959525 Msa0548210:intron 45.0%
! TTAGCAGGAAGGCTGCTTTA+TGG - chr4_1:41959517-41959536 Msa0548210:intron 45.0%
ACTTGTCCATCACAAATCCG+TGG - chr4_1:41959664-41959683 Msa0548210:intron 45.0%
CTTGTCCATCACAAATCCGT+GGG - chr4_1:41959665-41959684 Msa0548210:intron 45.0%
GGACTGAACTATCATGCAGT+TGG - chr4_1:41959792-41959811 Msa0548210:intron 45.0%
AGATTAGTACAGTAGGGGGA+TGG - chr4_1:41959836-41959855 Msa0548210:intron 45.0%
!! TGCTCCACTTGCTGTGTTAA+TGG - chr4_1:41959879-41959898 Msa0548210:intron 45.0%
!! GCTCCACTTGCTGTGTTAAT+GGG - chr4_1:41959880-41959899 Msa0548210:intron 45.0%
AGTCCCATTAACACAGCAAG+TGG + chr4_1:41959886-41959905 None:intergenic 45.0%
! CTTGCTGTGTTAATGGGACT+CGG - chr4_1:41959886-41959905 Msa0548210:intron 45.0%
TTGCTTCTCAAAGCCGTACA+AGG - chr4_1:41959940-41959959 Msa0548210:intron 45.0%
CTCAAAGCCGTACAAGGAAA+AGG - chr4_1:41959946-41959965 Msa0548210:intron 45.0%
GGAAAAGGCAATTGTTTCCC+TGG - chr4_1:41959987-41960006 Msa0548210:intron 45.0%
TTGTTTCCCTGGGCAAACTA+AGG - chr4_1:41959998-41960017 Msa0548210:intron 45.0%
TGTTTCCCTGGGCAAACTAA+GGG - chr4_1:41959999-41960018 Msa0548210:intron 45.0%
ATTCTTTGTCACCAAGTGGC+CGG + chr4_1:41960026-41960045 None:intergenic 45.0%
GAAGTCTGCCTATGAAGATC+AGG - chr4_1:41960080-41960099 Msa0548210:intron 45.0%
CTCGGATTCCTGATCTTCAT+AGG + chr4_1:41960091-41960110 None:intergenic 45.0%
CTATGAAGATCAGGAATCCG+AGG - chr4_1:41960089-41960108 Msa0548210:intron 45.0%
AAGCATTCGTAATTGGTGGG+GGG - chr4_1:41960148-41960167 Msa0548210:intron 45.0%
TTATGCAGGTCCCATTCTTC+AGG - chr4_1:41960355-41960374 Msa0548210:intron 45.0%
ATCGGTTGCTGTCCTAAAAG+TGG - chr4_1:41960635-41960654 Msa0548210:intron 45.0%
!! TCCCCAAATCGTCCACTTTT+AGG + chr4_1:41960650-41960669 None:intergenic 45.0%
! TCTTTACGTTGGTTGCTACC+AGG - chr4_1:41960874-41960893 Msa0548210:intron 45.0%
!! GCTACCAGGTAATGGTTTTC+TGG - chr4_1:41960888-41960907 Msa0548210:intron 45.0%
GACCTCTCTACTCCTCAAAA+AGG - chr4_1:41961038-41961057 Msa0548210:intron 45.0%
!! TCCCTTTTTGAGGAGTAGAG+AGG + chr4_1:41961043-41961062 None:intergenic 45.0%
TGGTACAAGAGAGGGGAAAA+TGG + chr4_1:41961115-41961134 None:intergenic 45.0%
TCAGTCCCTTTACAAGGCAA+AGG + chr4_1:41961675-41961694 None:intergenic 45.0%
AAGGGACTGATTACAACGGT+TGG - chr4_1:41961685-41961704 Msa0548210:CDS 45.0%
TGTCGAGCTGTCAAATGAAG+AGG + chr4_1:41961722-41961741 None:intergenic 45.0%
! CAAGGATGCTCTTTAAGGAG+AGG + chr4_1:41961856-41961875 None:intergenic 45.0%
GAGGTCAAGGATGCTCTTTA+AGG + chr4_1:41961861-41961880 None:intergenic 45.0%
!! AAAGAGCATCCTTGACCTCA+AGG - chr4_1:41961862-41961881 Msa0548210:CDS 45.0%
!! AAGAGCATCCTTGACCTCAA+GGG - chr4_1:41961863-41961882 Msa0548210:CDS 45.0%
! ACTTTTCACCCTTGAGGTCA+AGG + chr4_1:41961874-41961893 None:intergenic 45.0%
TGACCTCAAGGGTGAAAAGT+AGG - chr4_1:41961874-41961893 Msa0548210:CDS 45.0%
CCAAGCCTATACCACTACTT+GGG + chr4_1:41961929-41961948 None:intergenic 45.0%
CCAAGTAGTGGTATAGGCTT+GGG - chr4_1:41961927-41961946 Msa0548210:intron 45.0%
! TCTCTGGTGCCAATTTAGGT+GGG - chr4_1:41961991-41962010 Msa0548210:intron 45.0%
AACTCCCAAGTAGCCATTTC+AGG - chr4_1:41962046-41962065 Msa0548210:intron 45.0%
TCCACCTGAAATGGCTACTT+GGG + chr4_1:41962053-41962072 None:intergenic 45.0%
TTTCCACTGGACCAGAACTT+TGG - chr4_1:41962078-41962097 Msa0548210:intron 45.0%
! TCTCCGAGTGCATTTTAGAC+AGG + chr4_1:41962135-41962154 None:intergenic 45.0%
AGCAACAGTCCATAACATCC+CGG + chr4_1:41962185-41962204 None:intergenic 45.0%
! GTTATGGACTGTTGCTGTGT+TGG - chr4_1:41962189-41962208 Msa0548210:intron 45.0%
CATCTTTGGGTAGCTCCAAT+TGG - chr4_1:41962263-41962282 Msa0548210:exon 45.0%
AAGGACCGTAATACTTAGGC+AGG - chr4_1:41962320-41962339 Msa0548210:five_prime_UTR 45.0%
TCCTCAAGTTACACCCTTAC+AGG + chr4_1:41962381-41962400 None:intergenic 45.0%
CAGAGAGACCAAGAGAAATG+AGG - chr4_1:41962575-41962594 Msa0548210:intron 45.0%
CGGGTGAATCAACGAATATG+AGG + chr4_1:41962819-41962838 None:intergenic 45.0%
! GTTGATTCACCCGGAAGATA+AGG - chr4_1:41962826-41962845 Msa0548210:five_prime_UTR 45.0%
GTTCGGAGAAGCCTCAAAAT+TGG + chr4_1:41962960-41962979 None:intergenic 45.0%
CTTATCACCCTCAAACCGAT+GGG + chr4_1:41963029-41963048 None:intergenic 45.0%
GGCTTAGAAATGTAGGGTCA+CGG - chr4_1:41963101-41963120 Msa0548210:intron 45.0%
CGGTCACTGGTGATTGAATT+AGG - chr4_1:41963121-41963140 Msa0548210:intron 45.0%
! GGATGTGGCACAAGTTTTCT+TGG + chr4_1:41963173-41963192 None:intergenic 45.0%
CCACATCCAATGCCGAATAA+GGG - chr4_1:41963185-41963204 Msa0548210:intron 45.0%
! TCCTTTGGCTCACCCTTATT+CGG + chr4_1:41963200-41963219 None:intergenic 45.0%
GGAGTGGTTGAAGTAAACCA+GGG - chr4_1:41963341-41963360 Msa0548210:intron 45.0%
GAGTGGTTGAAGTAAACCAG+GGG - chr4_1:41963342-41963361 Msa0548210:intron 45.0%
!! AAGCCCCTCTTCTTTTGGAA+AGG + chr4_1:41963442-41963461 None:intergenic 45.0%
CGAGGTGAACTCAGAAGAAA+AGG + chr4_1:41963574-41963593 None:intergenic 45.0%
GTCCGAAATGAGTTCGGTTA+TGG - chr4_1:41963636-41963655 Msa0548210:intron 45.0%
GCTTGGGTGTCCAAATTGAT+GGG + chr4_1:41963817-41963836 None:intergenic 45.0%
GTTGAACACTCCCTTTCAAC+AGG + chr4_1:41963839-41963858 None:intergenic 45.0%
!! ACAGATAGAGCTTGTTGTCG+TGG - chr4_1:41963984-41964003 Msa0548210:intron 45.0%
AGTGCGAAGTGGGAAGATTT+CGG + chr4_1:41964594-41964613 None:intergenic 45.0%
TCTGTGTTGAATTCCACTGC+AGG - chr4_1:41964784-41964803 Msa0548210:intron 45.0%
!! ATTCCACTGCAGGAGTATCT+TGG - chr4_1:41964794-41964813 Msa0548210:intron 45.0%
TGGCCGCAAAAAGGAGAAAA+AGG + chr4_1:41964829-41964848 None:intergenic 45.0%
CTAATGCAATGGCCGCAAAA+AGG + chr4_1:41964838-41964857 None:intergenic 45.0%
ACTTCTGTCCCAGAGACAAA+AGG - chr4_1:41964878-41964897 Msa0548210:five_prime_UTR 45.0%
! AGCTCAAGCCTTTTGTCTCT+GGG + chr4_1:41964889-41964908 None:intergenic 45.0%
! AAGCTCAAGCCTTTTGTCTC+TGG + chr4_1:41964890-41964909 None:intergenic 45.0%
!!! TTTATTTTAATGTATTAATT+TGG - chr4_1:41959396-41959415 Msa0548210:intron 5.0%
!!! TAATAAGTTATTTTTATAAA+AGG - chr4_1:41964117-41964136 Msa0548210:intron 5.0%
!!! AATAAGTTATTTTTATAAAA+GGG - chr4_1:41964118-41964137 Msa0548210:intron 5.0%
GAAGAGTGAGCGGTAAGAAG+TGG + chr4_1:41957486-41957505 None:intergenic 50.0%
!! AAGCGCAGGAGTATTCTGCT+GGG - chr4_1:41957608-41957627 Msa0548210:intron 50.0%
ATAGCAAGCCACCCAATGCA+GGG + chr4_1:41958763-41958782 None:intergenic 50.0%
AATAGCAAGCCACCCAATGC+AGG + chr4_1:41958764-41958783 None:intergenic 50.0%
!! GCATTGGGTGGCTTGCTATT+TGG - chr4_1:41958764-41958783 Msa0548210:intron 50.0%
!! CGGTGCTACAATTTCACTGC+AGG - chr4_1:41958808-41958827 Msa0548210:intron 50.0%
TCACAGTCACCTGAGCTTAG+CGG - chr4_1:41958913-41958932 Msa0548210:intron 50.0%
TAGGTCAGTGGTTCCCTCTA+TGG - chr4_1:41959082-41959101 Msa0548210:intron 50.0%
AGGTCAGTGGTTCCCTCTAT+GGG - chr4_1:41959083-41959102 Msa0548210:intron 50.0%
GCAGCCCTGTTGTATGTACT+TGG - chr4_1:41959454-41959473 Msa0548210:intron 50.0%
! AACACCAAGTTCTGGTGCTG+TGG + chr4_1:41959494-41959513 None:intergenic 50.0%
! GGAAGGCTGCTTTATGGACT+TGG - chr4_1:41959523-41959542 Msa0548210:intron 50.0%
AGAGTCCCACGGATTTGTGA+TGG + chr4_1:41959673-41959692 None:intergenic 50.0%
CTTCATCGTCTTGGGGATTC+TGG - chr4_1:41959711-41959730 Msa0548210:intron 50.0%
TTAGTACAGTAGGGGGATGG+AGG - chr4_1:41959839-41959858 Msa0548210:intron 50.0%
AAGCAACCACCGAGGAGATT+CGG + chr4_1:41959926-41959945 None:intergenic 50.0%
GTTTCCCTGGGCAAACTAAG+GGG - chr4_1:41960000-41960019 Msa0548210:intron 50.0%
AGGCAGACTTCAACGAGACA+AGG + chr4_1:41960071-41960090 None:intergenic 50.0%
ATCCGAGGCGAGTTTCTTAG+AGG - chr4_1:41960104-41960123 Msa0548210:intron 50.0%
! CACCTCTAAGAAACTCGCCT+CGG + chr4_1:41960109-41960128 None:intergenic 50.0%
! ATTTTCTGCTGCAGCTGACG+CGG - chr4_1:41960481-41960500 Msa0548210:intron 50.0%
! AGAAGACCTCTGCTGATTGG+AGG - chr4_1:41960669-41960688 Msa0548210:intron 50.0%
! GGCTGCCAATTGTTGCTGTT+GGG - chr4_1:41960843-41960862 Msa0548210:intron 50.0%
! GCTGCCAATTGTTGCTGTTG+GGG - chr4_1:41960844-41960863 Msa0548210:intron 50.0%
AACGCCCCAACAGCAACAAT+TGG + chr4_1:41960851-41960870 None:intergenic 50.0%
! CGTTGGTTGCTACCAGGTAA+TGG - chr4_1:41960880-41960899 Msa0548210:intron 50.0%
! TGCTAGGCTCTCCCTTTTTG+AGG + chr4_1:41961053-41961072 None:intergenic 50.0%
CCCAAGTAGTGGTATAGGCT+TGG - chr4_1:41961926-41961945 Msa0548210:intron 50.0%
CCCAAGCCTATACCACTACT+TGG + chr4_1:41961930-41961949 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG + chr4_1:41961971-41961990 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+TGG - chr4_1:41961975-41961994 Msa0548210:intron 50.0%
! CTCTCTGGTGCCAATTTAGG+TGG - chr4_1:41961990-41962009 Msa0548210:intron 50.0%
TCCCAAGTAGCCATTTCAGG+TGG - chr4_1:41962049-41962068 Msa0548210:intron 50.0%
CTCCACCTGAAATGGCTACT+TGG + chr4_1:41962054-41962073 None:intergenic 50.0%
! CAGGTGGAGTATCTTTCCAC+TGG - chr4_1:41962065-41962084 Msa0548210:intron 50.0%
! CTACCAAAGTTCTGGTCCAG+TGG + chr4_1:41962084-41962103 None:intergenic 50.0%
GACAGGAAGATGGTCAAGAG+AGG + chr4_1:41962118-41962137 None:intergenic 50.0%
CAACAGTCCATAACATCCCG+GGG + chr4_1:41962183-41962202 None:intergenic 50.0%
GCAACAGTCCATAACATCCC+GGG + chr4_1:41962184-41962203 None:intergenic 50.0%
CTGTTGCTGTGTTGGGATCT+TGG - chr4_1:41962197-41962216 Msa0548210:intron 50.0%
! GCCTGTAAGGGTGTAACTTG+AGG - chr4_1:41962377-41962396 Msa0548210:five_prime_UTR 50.0%
! GGTTATCACTGGCTGAATGG+TGG + chr4_1:41962930-41962949 None:intergenic 50.0%
TTCACACTCTGTCTGCCCAT+CGG - chr4_1:41963011-41963030 Msa0548210:intron 50.0%
GCTTATCACCCTCAAACCGA+TGG + chr4_1:41963030-41963049 None:intergenic 50.0%
AAATGTAGGGTCACGGTCAC+TGG - chr4_1:41963108-41963127 Msa0548210:intron 50.0%
GCCACATCCAATGCCGAATA+AGG - chr4_1:41963184-41963203 Msa0548210:intron 50.0%
! CCCTTATTCGGCATTGGATG+TGG + chr4_1:41963188-41963207 None:intergenic 50.0%
GGGAGTGGTTGAAGTAAACC+AGG - chr4_1:41963340-41963359 Msa0548210:intron 50.0%
CTTCATTCTTCAGCAGCTGG+AGG + chr4_1:41963499-41963518 None:intergenic 50.0%
TGGCTTCATTCTTCAGCAGC+TGG + chr4_1:41963502-41963521 None:intergenic 50.0%
! AAAGGACGGTGCTGAACTCA+TGG + chr4_1:41963731-41963750 None:intergenic 50.0%
GATGCCTTGTCTCGAAAGGA+CGG + chr4_1:41963745-41963764 None:intergenic 50.0%
AGCTGATGCCTTGTCTCGAA+AGG + chr4_1:41963749-41963768 None:intergenic 50.0%
GGCTTGGGTGTCCAAATTGA+TGG + chr4_1:41963818-41963837 None:intergenic 50.0%
GACACCCAAGCCTGTTGAAA+GGG - chr4_1:41963826-41963845 Msa0548210:intron 50.0%
CACTCCCTTTCAACAGGCTT+GGG + chr4_1:41963833-41963852 None:intergenic 50.0%
ACACTCCCTTTCAACAGGCT+TGG + chr4_1:41963834-41963853 None:intergenic 50.0%
ATCTTCCCACTTCGCACTAG+AGG - chr4_1:41964596-41964615 Msa0548210:intron 50.0%
! TAGAGGACGGGGGATTAGTA+TGG - chr4_1:41964613-41964632 Msa0548210:intron 50.0%
!! AACAGCATTGGCAGCGAAGT+TGG + chr4_1:41964648-41964667 None:intergenic 50.0%
TTCTGGACAGGTTCAAGCGC+AGG - chr4_1:41957594-41957613 Msa0548210:intron 55.0%
!! CAAGCGCAGGAGTATTCTGC+TGG - chr4_1:41957607-41957626 Msa0548210:intron 55.0%
CAAACGACACCGCTAAGCTC+AGG + chr4_1:41958925-41958944 None:intergenic 55.0%
!! CTGAGCTTAGCGGTGTCGTT+TGG - chr4_1:41958923-41958942 Msa0548210:intron 55.0%
GGTCAGTGGTTCCCTCTATG+GGG - chr4_1:41959084-41959103 Msa0548210:intron 55.0%
TCCCTCTATGGGGCTCTTCT+TGG - chr4_1:41959094-41959113 Msa0548210:intron 55.0%
GCCAAGAAGAGCCCCATAGA+GGG + chr4_1:41959098-41959117 None:intergenic 55.0%
AGCCAAGAAGAGCCCCATAG+AGG + chr4_1:41959099-41959118 None:intergenic 55.0%
GGGAGGAAGCGACAACTCAT+CGG - chr4_1:41959430-41959449 Msa0548210:intron 55.0%
ACTGCCACAGCACCAGAACT+TGG - chr4_1:41959487-41959506 Msa0548210:intron 55.0%
GGGGGATGGAGGTTCATGTA+TGG - chr4_1:41959850-41959869 Msa0548210:intron 55.0%
AGCAACCACCGAGGAGATTC+GGG + chr4_1:41959925-41959944 None:intergenic 55.0%
!! GCTTTGAGAAGCAACCACCG+AGG + chr4_1:41959934-41959953 None:intergenic 55.0%
GGGAGAAGACCTCTGCTGAT+TGG - chr4_1:41960666-41960685 Msa0548210:intron 55.0%
CTGACACCTCCAATCAGCAG+AGG + chr4_1:41960678-41960697 None:intergenic 55.0%
!! CTGCTGATTGGAGGTGTCAG+TGG - chr4_1:41960678-41960697 Msa0548210:intron 55.0%
!! GGAGGTGTCAGTGGCATTGT+AGG - chr4_1:41960687-41960706 Msa0548210:intron 55.0%
GGGCTGCCAATTGTTGCTGT+TGG - chr4_1:41960842-41960861 Msa0548210:intron 55.0%
!! GGGGCGTTGCTTCTTTACGT+TGG - chr4_1:41960863-41960882 Msa0548210:intron 55.0%
AGTGGTATAGGCTTGGGACC+TGG - chr4_1:41961933-41961952 Msa0548210:intron 55.0%
GTGGTATAGGCTTGGGACCT+GGG - chr4_1:41961934-41961953 Msa0548210:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG + chr4_1:41961968-41961987 None:intergenic 55.0%
TGGGGCTGCAGCTTACCAAT+TGG + chr4_1:41962281-41962300 None:intergenic 55.0%
GTGAAAGTGAGCCTTGCGCA+AGG - chr4_1:41962348-41962367 Msa0548210:five_prime_UTR 55.0%
!! GCAAGGAGTGCTGCCTGTAA+GGG - chr4_1:41962365-41962384 Msa0548210:five_prime_UTR 55.0%
!! TCTGTCTGCCCATCGGTTTG+AGG - chr4_1:41963018-41963037 Msa0548210:intron 55.0%
!! CTGTCTGCCCATCGGTTTGA+GGG - chr4_1:41963019-41963038 Msa0548210:intron 55.0%
GGCTCACCCTTATTCGGCAT+TGG + chr4_1:41963194-41963213 None:intergenic 55.0%
GCCGAATAAGGGTGAGCCAA+AGG - chr4_1:41963196-41963215 Msa0548210:intron 55.0%
GAAGGATTGTCCCCTTCGTC+TGG + chr4_1:41963277-41963296 None:intergenic 55.0%
CCTGATTTAGCTGCATCCCC+TGG + chr4_1:41963361-41963380 None:intergenic 55.0%
CCAGGGGATGCAGCTAAATC+AGG - chr4_1:41963358-41963377 Msa0548210:intron 55.0%
AGCACCGTCCTTTCGAGACA+AGG - chr4_1:41963738-41963757 Msa0548210:intron 55.0%
! CAAGGCATCAGCTGCAGTCT+TGG - chr4_1:41963756-41963775 Msa0548210:intron 55.0%
GGACACCCAAGCCTGTTGAA+AGG - chr4_1:41963825-41963844 Msa0548210:intron 55.0%
! TGGGCCGATAAGTTGGCTGA+TGG - chr4_1:41964565-41964584 Msa0548210:intron 55.0%
TCCCACTTCGCACTAGAGGA+CGG - chr4_1:41964600-41964619 Msa0548210:intron 55.0%
GCTCCAAGATACTCCTGCAG+TGG + chr4_1:41964800-41964819 None:intergenic 55.0%
CGACTCTCCCCGAATCTCCT+CGG - chr4_1:41959914-41959933 Msa0548210:intron 60.0%
GCAACCACCGAGGAGATTCG+GGG + chr4_1:41959924-41959943 None:intergenic 60.0%
AAACTAAGGGGCCGGCCACT+TGG - chr4_1:41960012-41960031 Msa0548210:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr4_1:41961954-41961973 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr4_1:41961953-41961972 Msa0548210:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr4_1:41961960-41961979 Msa0548210:intron 60.0%
!! CGCAAGGAGTGCTGCCTGTA+AGG - chr4_1:41962364-41962383 Msa0548210:five_prime_UTR 60.0%
TCAGCAGCTGGAGGCCATTC+TGG + chr4_1:41963490-41963509 None:intergenic 60.0%
CCCGTCCTCTAGTGCGAAGT+GGG + chr4_1:41964604-41964623 None:intergenic 60.0%
CCCACTTCGCACTAGAGGAC+GGG - chr4_1:41964601-41964620 Msa0548210:intron 60.0%
CCACTTCGCACTAGAGGACG+GGG - chr4_1:41964602-41964621 Msa0548210:intron 60.0%
CACTTCGCACTAGAGGACGG+GGG - chr4_1:41964603-41964622 Msa0548210:intron 60.0%
CTCTCCCCGAATCTCCTCGG+TGG - chr4_1:41959917-41959936 Msa0548210:intron 65.0%
!! CCGGCCCCTTAGTTTGCCCA+GGG + chr4_1:41960007-41960026 None:intergenic 65.0%
CCCTGGGCAAACTAAGGGGC+CGG - chr4_1:41960004-41960023 Msa0548210:intron 65.0%
ATGCACTCGGAGACGCGAGC+AGG - chr4_1:41962142-41962161 Msa0548210:intron 65.0%
CAGGCAGCACTCCTTGCGCA+AGG + chr4_1:41962362-41962381 None:intergenic 65.0%
CCCCGTCCTCTAGTGCGAAG+TGG + chr4_1:41964605-41964624 None:intergenic 65.0%
!! GCCGGCCCCTTAGTTTGCCC+AGG + chr4_1:41960008-41960027 None:intergenic 70.0%
CACTCGGAGACGCGAGCAGG+TGG - chr4_1:41962145-41962164 Msa0548210:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41957180 41965191 41957180 ID=Msa0548210;Name=Msa0548210
chr4_1 mRNA 41957180 41965191 41957180 ID=Msa0548210-mRNA-1;Parent=Msa0548210;Name=Msa0548210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=1147|1|1|1|0.85|0.86|15|251|201
chr4_1 exon 41957180 41957565 41957180 ID=Msa0548210-mRNA-1:exon:10840;Parent=Msa0548210-mRNA-1
chr4_1 exon 41957677 41957814 41957677 ID=Msa0548210-mRNA-1:exon:10839;Parent=Msa0548210-mRNA-1
chr4_1 exon 41961476 41961574 41961476 ID=Msa0548210-mRNA-1:exon:10838;Parent=Msa0548210-mRNA-1
chr4_1 exon 41961667 41961747 41961667 ID=Msa0548210-mRNA-1:exon:10837;Parent=Msa0548210-mRNA-1
chr4_1 exon 41961836 41961898 41961836 ID=Msa0548210-mRNA-1:exon:10836;Parent=Msa0548210-mRNA-1
chr4_1 exon 41961995 41962042 41961995 ID=Msa0548210-mRNA-1:exon:10835;Parent=Msa0548210-mRNA-1
chr4_1 exon 41962183 41962204 41962183 ID=Msa0548210-mRNA-1:exon:10834;Parent=Msa0548210-mRNA-1
chr4_1 exon 41962261 41962560 41962261 ID=Msa0548210-mRNA-1:exon:10833;Parent=Msa0548210-mRNA-1
chr4_1 exon 41962639 41962740 41962639 ID=Msa0548210-mRNA-1:exon:10832;Parent=Msa0548210-mRNA-1
chr4_1 exon 41962816 41962940 41962816 ID=Msa0548210-mRNA-1:exon:10831;Parent=Msa0548210-mRNA-1
chr4_1 exon 41963220 41963286 41963220 ID=Msa0548210-mRNA-1:exon:10830;Parent=Msa0548210-mRNA-1
chr4_1 exon 41963393 41963452 41963393 ID=Msa0548210-mRNA-1:exon:10829;Parent=Msa0548210-mRNA-1
chr4_1 exon 41963542 41963620 41963542 ID=Msa0548210-mRNA-1:exon:10828;Parent=Msa0548210-mRNA-1
chr4_1 exon 41964679 41964767 41964679 ID=Msa0548210-mRNA-1:exon:10827;Parent=Msa0548210-mRNA-1
chr4_1 exon 41964847 41965191 41964847 ID=Msa0548210-mRNA-1:exon:10826;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41964847 41965191 41964847 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41964679 41964767 41964679 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41963542 41963620 41963542 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41963393 41963452 41963393 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41963220 41963286 41963220 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41962816 41962940 41962816 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41962639 41962740 41962639 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 five_prime_UTR 41962281 41962560 41962281 ID=Msa0548210-mRNA-1:five_prime_utr;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41962261 41962280 41962261 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41962183 41962204 41962183 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41961995 41962042 41961995 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41961836 41961898 41961836 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41961667 41961747 41961667 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41961476 41961574 41961476 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41957677 41957814 41957677 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 CDS 41957431 41957565 41957431 ID=Msa0548210-mRNA-1:cds;Parent=Msa0548210-mRNA-1
chr4_1 three_prime_UTR 41957180 41957430 41957180 ID=Msa0548210-mRNA-1:three_prime_utr;Parent=Msa0548210-mRNA-1
Gene Sequence

>Msa0548210

ATGAAGATCAGGAATCCGAGGGGGCTAGTATTATTTCAACAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTCCCATTCTTCAGAGTGCTGGATTTTCTGCTGCAGCTGACGCGGCTAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTAGTAATGACATCGGTTGCTGTCCTAAAAGTGGACGATTTGGGGAGAAGACCTCTGCTGATTGGAGGTGTCAGTGGCATTGCCTTATCTTTAGTTCTCCTTTCTGCTTATTATAAATTTCTCGGAGGGCTGCCAATTGTTGCTGTTGGGGCGTTGCTTCTTTACGTTGGTTGCTACCAGATATCATTTGGGCCGATAAGTTGGCTGATGGTATCCGAAATCTTCCCACTTCGCACTAGAGGACGGGGGATTAGTATGGCTGTTCTTACCAACTTCGCTGCCAATGCTGTTGTTACCTTTGCATTCTCACCATTGAAGGAGTATCTTGGAGCAGAGAACCTTTTTCTCCTTTTTGCGGCCATTGCATTAGTGTCACTTGTGTTCATTGTAACTTCTGTCCCAGAGACAAAAGGCTTGAGCTTAGAAGAAATTGAATCCAAAATCTTGAAGTGA
Protein sequence

>Msa0548210

MKIRNPRGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAAKVSVVIGLFKLVMTSVAVLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGLPIVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISMAVLTNFAANAVVTFAFSPLKEYLGAENLFLLFAAIALVSLVFIVTSVPETKGLSLEEIESKILK*