AlfalfaGEDB | Msa0862290

M. sativa cultivar zhongmu-4 / Msa0862290

KEGG: -
GO: GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
PFAM: PF08212.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862290	XP_003617483.2	95.808	334	14	0	1	334	1	334	0.0	652

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862290	sp\|Q9STS7\|CHL_ARATH	69.841	315	86	5	25	334	43	353	2.14e-154	439

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862290	G7K3G5	95.808	334	14	0	1	334	1	334	0.0	652

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0609790	Msa0862290	0.806654	7.405323e-50	-8.615850e-47
Msa0636720	Msa0862290	0.810662	1.030863e-50	-8.615850e-47
Msa0644630	Msa0862290	0.802808	4.706340e-49	-8.615850e-47
Msa0742160	Msa0862290	0.997315	2.139247e-240	-8.615850e-47
Msa0786060	Msa0862290	0.987756	2.023779e-171	-8.615850e-47
Msa0823420	Msa0862290	0.988864	1.010292e-175	-8.615850e-47
Msa0197030	Msa0862290	0.814542	1.461279e-51	-8.615850e-47
Msa0316610	Msa0862290	0.808650	2.790564e-50	-8.615850e-47
Msa0525270	Msa0862290	0.815067	1.117764e-51	-8.615850e-47
Msa0525280	Msa0862290	0.817956	2.519149e-52	-8.615850e-47
Msa0548210	Msa0862290	0.817091	3.946526e-52	-8.615850e-47
Msa0862290	Msa1069960	0.813255	2.808180e-51	-8.615850e-47
Msa0862290	Msa1119860	0.811105	8.269143e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862290	MtrunA17_Chr5g0443651	95.808	334	14	0	1	334	1	334	0.0	652

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862290	AT3G47860.1	69.841	315	86	5	25	334	43	353	2.18e-155	439

Find 68 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAATTATGCTCTTGTTTC+TGG	0.024981	5_4:+61914006	Msa0862290:CDS
AAAACTTACCTTGCAGATTA+TGG	0.223001	5_4:+61914872	Msa0862290:CDS
TTACTAAATTCTTTGCATTA+AGG	0.241023	5_4:+61915255	Msa0862290:three_prime_UTR
TCAGTTCAAGATCAGGAAAT+TGG	0.260295	5_4:-61915003	None:intergenic
TTTGACCCTATCAGATATTC+AGG	0.279436	5_4:+61913472	Msa0862290:CDS
GAGTGCAATGACAGTCTTCT+TGG	0.317907	5_4:-61913543	None:intergenic
ATTTATCTCTCCAGCAAATC+AGG	0.333389	5_4:+61912412	Msa0862290:CDS
TTGTATTTCTCTATAAATTC+AGG	0.336114	5_4:-61914851	None:intergenic
CATCTTCCTGAATATCTGAT+AGG	0.337240	5_4:-61913478	None:intergenic
ATGGGTATATAACTGGCATT+AGG	0.339085	5_4:+61913833	Msa0862290:CDS
TCTGATAGGGTCAAAATTCT+TGG	0.339639	5_4:-61913464	None:intergenic
CATAGCTGCCAGTTTACTAT+TGG	0.341261	5_4:-61914945	None:intergenic
ACAATACAAACCTGATTTGC+TGG	0.354372	5_4:-61912422	None:intergenic
TTCACTTGATCTTTCAAGTA+AGG	0.357987	5_4:+61912346	Msa0862290:CDS
GTAGCTTAGGTGATGCTCTT+AGG	0.358042	5_4:-61912173	None:intergenic
ATGTCTTTCACAAGAAGATT+TGG	0.359868	5_4:+61913867	Msa0862290:CDS
AACACAATCATTAAAATTCA+AGG	0.367727	5_4:-61915216	None:intergenic
GTTAGTGCCTGTTGCATCCC+TGG	0.384685	5_4:-61914977	None:intergenic
TTCTCTATAAATTCAGGTCC+AGG	0.399668	5_4:-61914845	None:intergenic
TGGGTATATAACTGGCATTA+GGG	0.407261	5_4:+61913834	Msa0862290:CDS
AGGGTGTGTATACATTTGAT+AGG	0.419310	5_4:+61913761	Msa0862290:intron
AGTAATGTCCAATAGTAAAC+TGG	0.423649	5_4:+61914937	Msa0862290:CDS
TCACTGGACTCATTCTCAAA+TGG	0.439527	5_4:-61913403	None:intergenic
TGCTCTTGTTTCTGGAGCTA+AGG	0.441426	5_4:+61914014	Msa0862290:CDS
GAAGTACAGTGAAGTAGCTT+AGG	0.441656	5_4:-61912186	None:intergenic
GGCCCTGATGGGTATATAAC+TGG	0.444525	5_4:+61913826	Msa0862290:CDS
ATAAATTCAGGTCCAGGGTT+AGG	0.446321	5_4:-61914839	None:intergenic
AAAGTATCAACTTGGATAGC+TGG	0.451315	5_4:-61913790	None:intergenic
ATGCCAGTTATATACCCATC+AGG	0.453847	5_4:-61913829	None:intergenic
GGTGTATCTTTAATTTCGCT+TGG	0.461443	5_4:-61914902	None:intergenic
TCAGTAGCAATCACATCATA+AGG	0.465892	5_4:-61913979	None:intergenic
ATCACATCATAAGGCTCCTT+GGG	0.467344	5_4:-61913970	None:intergenic
CTATCAGATATTCAGGAAGA+TGG	0.471288	5_4:+61913479	Msa0862290:CDS
GTCCATGCCAGGGATGCAAC+AGG	0.473508	5_4:+61914970	Msa0862290:CDS
AATCACATCATAAGGCTCCT+TGG	0.473774	5_4:-61913971	None:intergenic
TTGGGAATGAACGGCAATGT+TGG	0.490083	5_4:-61913952	None:intergenic
GAGCCCTTCAGTTCAAGATC+AGG	0.499745	5_4:-61915010	None:intergenic
AACATTGCCGTTCATTCCCA+AGG	0.502752	5_4:+61913954	Msa0862290:CDS
GCAGCTATGATGTCCATGCC+AGG	0.511229	5_4:+61914959	Msa0862290:CDS
ATTTCCTGATCTTGAACTGA+AGG	0.514630	5_4:+61915006	Msa0862290:CDS
TCTCTATAAATTCAGGTCCA+GGG	0.519094	5_4:-61914844	None:intergenic
ATATAACTGGCATTAGGGGA+AGG	0.531773	5_4:+61913839	Msa0862290:CDS
ATCTTCCTGAATATCTGATA+GGG	0.534452	5_4:-61913477	None:intergenic
CTTATCCTCTCATTCATCAA+AGG	0.536489	5_4:+61912211	Msa0862290:CDS
GGGTGTGTATACATTTGATA+GGG	0.537787	5_4:+61913762	Msa0862290:intron
TGCTGGAGAGATAAATATCA+AGG	0.541440	5_4:-61912405	None:intergenic
GACATTACTTCACAATCTTG+AGG	0.543352	5_4:-61914923	None:intergenic
CTAAATTCTTTGCATTAAGG+AGG	0.548450	5_4:+61915258	Msa0862290:three_prime_UTR
TTTCACTGGCAATAGCAAGC+TGG	0.550592	5_4:-61913366	None:intergenic
TGCCTGTTGCATCCCTGGCA+TGG	0.552579	5_4:-61914972	None:intergenic
TATAACTGGCATTAGGGGAA+GGG	0.559959	5_4:+61913840	Msa0862290:CDS
TGTTACCTTTGATGAATGAG+AGG	0.569074	5_4:-61912216	None:intergenic
TTTCCTGATCTTGAACTGAA+GGG	0.583532	5_4:+61915007	Msa0862290:CDS
GTTTCAAATACACTTGTGAG+TGG	0.612175	5_4:-61915046	None:intergenic
TAAGGCTCCTTGGGAATGAA+CGG	0.612716	5_4:-61913961	None:intergenic
TGAGACACAACTTGAGACGC+AGG	0.613938	5_4:+61913897	Msa0862290:CDS
AGAAGACTGTCATTGCACTC+AGG	0.620753	5_4:+61913546	Msa0862290:CDS
GAGACGCAGGAGATGATCAA+AGG	0.621662	5_4:+61913910	Msa0862290:CDS
GATTATAGCCATAATCTGCA+AGG	0.627467	5_4:-61914880	None:intergenic
TACTCAAGGACACCTAACCC+TGG	0.635374	5_4:+61914827	Msa0862290:CDS
GAAAATCTTATGATGATGAG+AGG	0.636432	5_4:+61913433	Msa0862290:CDS
AAATTGAGAAAGCAAAGTCA+TGG	0.636574	5_4:+61912140	None:intergenic
TGCCAGTTATATACCCATCA+GGG	0.636591	5_4:-61913828	None:intergenic
GGGTATATAACTGGCATTAG+GGG	0.637286	5_4:+61913835	Msa0862290:CDS
CAGCTATGATGTCCATGCCA+GGG	0.657155	5_4:+61914960	Msa0862290:CDS
CAATATTACAGATATACTCA+AGG	0.664599	5_4:+61914813	Msa0862290:intron
TGAACGGCAATGTTGGAAAG+CGG	0.667583	5_4:-61913945	None:intergenic
GAAGTTGCTTCACTCAAACG+CGG	0.736177	5_4:+61913505	Msa0862290:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCTTAAATTATTTATTAG+TGG	+	chr5_4:61914718-61914737	Msa0862290:intron	10.0%
!!!	TATACAGATTTTAATTATAG+TGG	+	chr5_4:61912521-61912540	Msa0862290:intron	15.0%
!!	TTGTAACTTTAATACATTTA+TGG	-	chr5_4:61912679-61912698	None:intergenic	15.0%
!!!	AATTTGCTTATAATTCATTT+CGG	-	chr5_4:61912941-61912960	None:intergenic	15.0%
!!!	AAATTTTACTTCATCTATTT+TGG	+	chr5_4:61912956-61912975	Msa0862290:intron	15.0%
!!!	AGGCAATAATTTTTTTTTAT+TGG	+	chr5_4:61913050-61913069	Msa0862290:intron	15.0%
!!!	TTCTTCTAAATTTTAATTGA+TGG	+	chr5_4:61914371-61914390	Msa0862290:intron	15.0%
!!	GTTACAACAATAATTGATAA+TGG	-	chr5_4:61912275-61912294	None:intergenic	20.0%
!!!	TTTTTTTTATTGGATTGCAT+AGG	+	chr5_4:61913060-61913079	Msa0862290:intron	20.0%
!!	AATAAATATAGTCTGTGTTT+AGG	+	chr5_4:61913583-61913602	Msa0862290:intron	20.0%
!!	AGTATATAAATGACATTTCA+GGG	+	chr5_4:61913742-61913761	Msa0862290:intron	20.0%
!!!	TAAATTTTAATTGATGGCAA+TGG	+	chr5_4:61914377-61914396	Msa0862290:intron	20.0%
!!	ATATCTGTAATATTGATCAA+GGG	-	chr5_4:61914808-61914827	None:intergenic	20.0%
!!	TATATCTGTAATATTGATCA+AGG	-	chr5_4:61914809-61914828	None:intergenic	20.0%
!!	TTGTATTTCTCTATAAATTC+AGG	-	chr5_4:61914854-61914873	None:intergenic	20.0%
!!	AACACAATCATTAAAATTCA+AGG	-	chr5_4:61915219-61915238	None:intergenic	20.0%
!!	TTACTAAATTCTTTGCATTA+AGG	+	chr5_4:61915255-61915274	Msa0862290:three_prime_UTR	20.0%
!	TAGTAAAATTCTTAGAGTTG+TGG	-	chr5_4:61912479-61912498	None:intergenic	25.0%
!	TATATGATTCCAAAATCACA+TGG	+	chr5_4:61912563-61912582	Msa0862290:intron	25.0%
!!!	TCTTATGCTTGTAGTTTTAT+GGG	-	chr5_4:61912771-61912790	None:intergenic	25.0%
!	GTATTAGTTATGACTTATGA+AGG	+	chr5_4:61913020-61913039	Msa0862290:intron	25.0%
!	TGACTTATGAAGGTTAATTT+AGG	+	chr5_4:61913030-61913049	Msa0862290:intron	25.0%
!	TACACATGTTAAGAAAAAGT+AGG	-	chr5_4:61913099-61913118	None:intergenic	25.0%
!	GAACAATGTTAAGTTAACAA+GGG	-	chr5_4:61913625-61913644	None:intergenic	25.0%
!	TGAACAATGTTAAGTTAACA+AGG	-	chr5_4:61913626-61913645	None:intergenic	25.0%
!	CATATTAATATCAAGAAGCA+TGG	-	chr5_4:61913722-61913741	None:intergenic	25.0%
!	GAGTATATAAATGACATTTC+AGG	+	chr5_4:61913741-61913760	Msa0862290:intron	25.0%
!!!	TTGATACTTTTTGTGTTCAT+GGG	+	chr5_4:61913803-61913822	Msa0862290:CDS	25.0%
!	AATAAGCTGAAAACAGATTA+TGG	-	chr5_4:61914179-61914198	None:intergenic	25.0%
!!	AATCATGTCTTGATAATTTG+TGG	+	chr5_4:61914518-61914537	Msa0862290:intron	25.0%
!	AACTAGTATATGTGTTAACT+TGG	-	chr5_4:61914589-61914608	None:intergenic	25.0%
!	TAATTGAATGTAATATGCGT+TGG	-	chr5_4:61914691-61914710	None:intergenic	25.0%
!	AATATTATGAATTACGACAC+CGG	-	chr5_4:61914766-61914785	None:intergenic	25.0%
!	CAATATTACAGATATACTCA+AGG	+	chr5_4:61914813-61914832	Msa0862290:intron	25.0%
!!!	TTTTGTTTCTAGACAATGCA+GGG	+	chr5_4:61912295-61912314	Msa0862290:intron	30.0%
!	TTCACTTGATCTTTCAAGTA+AGG	+	chr5_4:61912346-61912365	Msa0862290:CDS	30.0%
!	CTGACTAAACATGTTTTATC+TGG	+	chr5_4:61912371-61912390	Msa0862290:CDS	30.0%
!!	GTCTTATGCTTGTAGTTTTA+TGG	-	chr5_4:61912772-61912791	None:intergenic	30.0%
	TTGAAGTTTCGATACATTCA+AGG	+	chr5_4:61912808-61912827	Msa0862290:intron	30.0%
	AAATCCACAGAAAAACGTAA+CGG	-	chr5_4:61912900-61912919	None:intergenic	30.0%
	TTGCTTATAATTCATTTCGG+AGG	-	chr5_4:61912938-61912957	None:intergenic	30.0%
	TTGCTTATATTTCAGTCTAG+AGG	+	chr5_4:61913132-61913151	Msa0862290:intron	30.0%
!	TCTAGAGGAAGTAGATATTT+TGG	+	chr5_4:61913147-61913166	Msa0862290:intron	30.0%
!	CTAGAGGAAGTAGATATTTT+GGG	+	chr5_4:61913148-61913167	Msa0862290:intron	30.0%
	CACTCTTTAATATGACCATA+TGG	+	chr5_4:61913177-61913196	Msa0862290:intron	30.0%
	CATTTGTAAGAACTTCCATA+TGG	-	chr5_4:61913195-61913214	None:intergenic	30.0%
!	GAAAATCTTATGATGATGAG+AGG	+	chr5_4:61913433-61913452	Msa0862290:CDS	30.0%
	ATCTTCCTGAATATCTGATA+GGG	-	chr5_4:61913480-61913499	None:intergenic	30.0%
	AGTTAACAAGGGAAATAAGT+TGG	-	chr5_4:61913614-61913633	None:intergenic	30.0%
	AAATAGATTCTATGCACATG+TGG	-	chr5_4:61913685-61913704	None:intergenic	30.0%
!!	GAACACAAAAAGTATCAACT+TGG	-	chr5_4:61913801-61913820	None:intergenic	30.0%
!!	GTTGATACTTTTTGTGTTCA+TGG	+	chr5_4:61913802-61913821	Msa0862290:CDS	30.0%
!!	TGATACTTTTTGTGTTCATG+GGG	+	chr5_4:61913804-61913823	Msa0862290:CDS	30.0%
	ATGTCTTTCACAAGAAGATT+TGG	+	chr5_4:61913867-61913886	Msa0862290:CDS	30.0%
	TTAATAGCTATGAGTTAGCA+AGG	+	chr5_4:61914462-61914481	Msa0862290:intron	30.0%
	TAATAGCTATGAGTTAGCAA+GGG	+	chr5_4:61914463-61914482	Msa0862290:intron	30.0%
	AAAACTTACCTTGCAGATTA+TGG	+	chr5_4:61914872-61914891	Msa0862290:CDS	30.0%
	AGTAATGTCCAATAGTAAAC+TGG	+	chr5_4:61914937-61914956	Msa0862290:CDS	30.0%
	CTAAATTCTTTGCATTAAGG+AGG	+	chr5_4:61915258-61915277	Msa0862290:three_prime_UTR	30.0%
	CTTATCCTCTCATTCATCAA+AGG	+	chr5_4:61912211-61912230	Msa0862290:CDS	35.0%
	TGTTACCTTTGATGAATGAG+AGG	-	chr5_4:61912219-61912238	None:intergenic	35.0%
!!!	CTTTTGTTTCTAGACAATGC+AGG	+	chr5_4:61912294-61912313	Msa0862290:intron	35.0%
!!	TTTGTTTCTAGACAATGCAG+GGG	+	chr5_4:61912296-61912315	Msa0862290:intron	35.0%
	TGCTGGAGAGATAAATATCA+AGG	-	chr5_4:61912408-61912427	None:intergenic	35.0%
	ATTTATCTCTCCAGCAAATC+AGG	+	chr5_4:61912412-61912431	Msa0862290:CDS	35.0%
!	ACAATACAAACCTGATTTGC+TGG	-	chr5_4:61912425-61912444	None:intergenic	35.0%
!	AGCTAATGTCCATGTGATTT+TGG	-	chr5_4:61912575-61912594	None:intergenic	35.0%
!!	GTGTAGTCTTTTTGTCGTTT+TGG	+	chr5_4:61912745-61912764	Msa0862290:intron	35.0%
	CTTATAATTCATTTCGGAGG+AGG	-	chr5_4:61912935-61912954	None:intergenic	35.0%
	ATGGAAGTTCTTACAAATGC+TGG	+	chr5_4:61913196-61913215	Msa0862290:intron	35.0%
!	CTACAGACTGTTGATGAAAA+AGG	-	chr5_4:61913312-61913331	None:intergenic	35.0%
!	TGAACTAACTGCATTTTCAC+TGG	-	chr5_4:61913383-61913402	None:intergenic	35.0%
!!	AAGATTTTCGCTGTTTTCAC+TGG	-	chr5_4:61913422-61913441	None:intergenic	35.0%
	TCTGATAGGGTCAAAATTCT+TGG	-	chr5_4:61913467-61913486	None:intergenic	35.0%
	TTTGACCCTATCAGATATTC+AGG	+	chr5_4:61913472-61913491	Msa0862290:CDS	35.0%
	CATCTTCCTGAATATCTGAT+AGG	-	chr5_4:61913481-61913500	None:intergenic	35.0%
	CTATCAGATATTCAGGAAGA+TGG	+	chr5_4:61913479-61913498	Msa0862290:CDS	35.0%
	TGTTCACAACTAACTGTTGA+AGG	+	chr5_4:61913640-61913659	Msa0862290:intron	35.0%
	GTTCACAACTAACTGTTGAA+GGG	+	chr5_4:61913641-61913660	Msa0862290:intron	35.0%
	TTCACAACTAACTGTTGAAG+GGG	+	chr5_4:61913642-61913661	Msa0862290:intron	35.0%
!	AATATCAAGAAGCATGGTCA+TGG	-	chr5_4:61913716-61913735	None:intergenic	35.0%
	AGGGTGTGTATACATTTGAT+AGG	+	chr5_4:61913761-61913780	Msa0862290:intron	35.0%
	GGGTGTGTATACATTTGATA+GGG	+	chr5_4:61913762-61913781	Msa0862290:intron	35.0%
!	AAAGTATCAACTTGGATAGC+TGG	-	chr5_4:61913793-61913812	None:intergenic	35.0%
!!	GATACTTTTTGTGTTCATGG+GGG	+	chr5_4:61913805-61913824	Msa0862290:CDS	35.0%
	ATGGGTATATAACTGGCATT+AGG	+	chr5_4:61913833-61913852	Msa0862290:CDS	35.0%
	TGGGTATATAACTGGCATTA+GGG	+	chr5_4:61913834-61913853	Msa0862290:CDS	35.0%
	TCAGTAGCAATCACATCATA+AGG	-	chr5_4:61913982-61914001	None:intergenic	35.0%
!	GACAATTATGCTCTTGTTTC+TGG	+	chr5_4:61914006-61914025	Msa0862290:CDS	35.0%
!!!	TAAGGACACAAGTTTTGTTC+AGG	+	chr5_4:61914032-61914051	Msa0862290:CDS	35.0%
!!	CTTATTTCTATAAGCTCTCC+AGG	+	chr5_4:61914193-61914212	Msa0862290:intron	35.0%
	CAAGTTTATCAACTCTTTCC+TGG	-	chr5_4:61914545-61914564	None:intergenic	35.0%
	TCTCTATAAATTCAGGTCCA+GGG	-	chr5_4:61914847-61914866	None:intergenic	35.0%
	TTCTCTATAAATTCAGGTCC+AGG	-	chr5_4:61914848-61914867	None:intergenic	35.0%
	GATTATAGCCATAATCTGCA+AGG	-	chr5_4:61914883-61914902	None:intergenic	35.0%
!	GGTGTATCTTTAATTTCGCT+TGG	-	chr5_4:61914905-61914924	None:intergenic	35.0%
	GACATTACTTCACAATCTTG+AGG	-	chr5_4:61914926-61914945	None:intergenic	35.0%
	TCAGTTCAAGATCAGGAAAT+TGG	-	chr5_4:61915006-61915025	None:intergenic	35.0%
	ATTTCCTGATCTTGAACTGA+AGG	+	chr5_4:61915006-61915025	Msa0862290:CDS	35.0%
	TTTCCTGATCTTGAACTGAA+GGG	+	chr5_4:61915007-61915026	Msa0862290:CDS	35.0%
	GTTTCAAATACACTTGTGAG+TGG	-	chr5_4:61915049-61915068	None:intergenic	35.0%
	GAAGTACAGTGAAGTAGCTT+AGG	-	chr5_4:61912189-61912208	None:intergenic	40.0%
	ATCACATGGACATTAGCTAG+AGG	+	chr5_4:61912577-61912596	Msa0862290:intron	40.0%
	CGAATGTGTCTTTCTCTAGT+CGG	+	chr5_4:61912708-61912727	Msa0862290:intron	40.0%
!	CAGACTGTTGATGAAAAAGG+TGG	-	chr5_4:61913309-61913328	None:intergenic	40.0%
	TCACTGGACTCATTCTCAAA+TGG	-	chr5_4:61913406-61913425	None:intergenic	40.0%
	TCACAACTAACTGTTGAAGG+GGG	+	chr5_4:61913643-61913662	Msa0862290:intron	40.0%
	TGCCAGTTATATACCCATCA+GGG	-	chr5_4:61913831-61913850	None:intergenic	40.0%
	ATGCCAGTTATATACCCATC+AGG	-	chr5_4:61913832-61913851	None:intergenic	40.0%
	GGGTATATAACTGGCATTAG+GGG	+	chr5_4:61913835-61913854	Msa0862290:CDS	40.0%
	ATATAACTGGCATTAGGGGA+AGG	+	chr5_4:61913839-61913858	Msa0862290:CDS	40.0%
	TATAACTGGCATTAGGGGAA+GGG	+	chr5_4:61913840-61913859	Msa0862290:CDS	40.0%
	ATCACATCATAAGGCTCCTT+GGG	-	chr5_4:61913973-61913992	None:intergenic	40.0%
	AATCACATCATAAGGCTCCT+TGG	-	chr5_4:61913974-61913993	None:intergenic	40.0%
!!	GTTGTTTTCATGAGCTATCC+TGG	-	chr5_4:61914214-61914233	None:intergenic	40.0%
!	GTCTTGATAATTTGTGGTCC+AGG	+	chr5_4:61914524-61914543	Msa0862290:intron	40.0%
	CGTTTGTAGCACCAATATAC+CGG	+	chr5_4:61914617-61914636	Msa0862290:intron	40.0%
!!	AATATGCGTTGGTGTCATGT+CGG	-	chr5_4:61914680-61914699	None:intergenic	40.0%
	ATAAATTCAGGTCCAGGGTT+AGG	-	chr5_4:61914842-61914861	None:intergenic	40.0%
	CATAGCTGCCAGTTTACTAT+TGG	-	chr5_4:61914948-61914967	None:intergenic	40.0%
	GTAGCTTAGGTGATGCTCTT+AGG	-	chr5_4:61912176-61912195	None:intergenic	45.0%
	TTTCACTGGCAATAGCAAGC+TGG	-	chr5_4:61913369-61913388	None:intergenic	45.0%
	GAAGTTGCTTCACTCAAACG+CGG	+	chr5_4:61913505-61913524	Msa0862290:CDS	45.0%
	GAGTGCAATGACAGTCTTCT+TGG	-	chr5_4:61913546-61913565	None:intergenic	45.0%
	AGAAGACTGTCATTGCACTC+AGG	+	chr5_4:61913546-61913565	Msa0862290:CDS	45.0%
	TGAACGGCAATGTTGGAAAG+CGG	-	chr5_4:61913948-61913967	None:intergenic	45.0%
	TTGGGAATGAACGGCAATGT+TGG	-	chr5_4:61913955-61913974	None:intergenic	45.0%
	AACATTGCCGTTCATTCCCA+AGG	+	chr5_4:61913954-61913973	Msa0862290:CDS	45.0%
	TAAGGCTCCTTGGGAATGAA+CGG	-	chr5_4:61913964-61913983	None:intergenic	45.0%
!!	TGCTCTTGTTTCTGGAGCTA+AGG	+	chr5_4:61914014-61914033	Msa0862290:CDS	45.0%
	GTAGCACCAATATACCGGAT+TGG	+	chr5_4:61914622-61914641	Msa0862290:intron	45.0%
	CTACTTGTCAGTGTCATGTC+CGG	+	chr5_4:61914744-61914763	Msa0862290:intron	45.0%
!	AGCGCCGTTACGTTTTTCTG+TGG	+	chr5_4:61912893-61912912	Msa0862290:intron	50.0%
!	TCACTCAAACGCGGTTTTGC+TGG	+	chr5_4:61913514-61913533	Msa0862290:CDS	50.0%
	CAACTAACTGTTGAAGGGGG+AGG	+	chr5_4:61913646-61913665	Msa0862290:intron	50.0%
!	GGCCCTGATGGGTATATAAC+TGG	+	chr5_4:61913826-61913845	Msa0862290:CDS	50.0%
	TGAGACACAACTTGAGACGC+AGG	+	chr5_4:61913897-61913916	Msa0862290:CDS	50.0%
	GAGACGCAGGAGATGATCAA+AGG	+	chr5_4:61913910-61913929	Msa0862290:CDS	50.0%
!	GCACCAATATACCGGATTGG+TGG	+	chr5_4:61914625-61914644	Msa0862290:intron	50.0%
	ACGCCACCAATCCGGTATAT+TGG	-	chr5_4:61914631-61914650	None:intergenic	50.0%
	CACTGACATGTGTGAGACAC+CGG	-	chr5_4:61914656-61914675	None:intergenic	50.0%
	TACTCAAGGACACCTAACCC+TGG	+	chr5_4:61914827-61914846	Msa0862290:CDS	50.0%
	CAGCTATGATGTCCATGCCA+GGG	+	chr5_4:61914960-61914979	Msa0862290:CDS	50.0%
	GAGCCCTTCAGTTCAAGATC+AGG	-	chr5_4:61915013-61915032	None:intergenic	50.0%
!	AAACGCGGTTTTGCTGGAGC+AGG	+	chr5_4:61913520-61913539	Msa0862290:CDS	55.0%
	GACTGTCATTGCACTCAGGC+AGG	+	chr5_4:61913550-61913569	Msa0862290:intron	55.0%
	GCAGCTATGATGTCCATGCC+AGG	+	chr5_4:61914959-61914978	Msa0862290:CDS	55.0%
	GTTAGTGCCTGTTGCATCCC+TGG	-	chr5_4:61914980-61914999	None:intergenic	55.0%
	TGTGTTCATGGGGGCCCTGA+TGG	+	chr5_4:61913814-61913833	Msa0862290:CDS	60.0%
	GTGTTCATGGGGGCCCTGAT+GGG	+	chr5_4:61913815-61913834	Msa0862290:CDS	60.0%
!!	TACCGGATTGGTGGCGTGTC+CGG	+	chr5_4:61914634-61914653	Msa0862290:intron	60.0%
	GTCCATGCCAGGGATGCAAC+AGG	+	chr5_4:61914970-61914989	Msa0862290:CDS	60.0%
	TGCCTGTTGCATCCCTGGCA+TGG	-	chr5_4:61914975-61914994	None:intergenic	60.0%
	CACCGGACACGCCACCAATC+CGG	-	chr5_4:61914639-61914658	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	61912148	61915283	61912148	ID=Msa0862290;Name=Msa0862290
chr5_4	mRNA	61912148	61915283	61912148	ID=Msa0862290-mRNA-1;Parent=Msa0862290;Name=Msa0862290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=11\|1\|1\|1\|1\|1\|5\|181\|334
chr5_4	exon	61912148	61912232	61912148	ID=Msa0862290-mRNA-1:exon:19229;Parent=Msa0862290-mRNA-1
chr5_4	exon	61912316	61912433	61912316	ID=Msa0862290-mRNA-1:exon:19230;Parent=Msa0862290-mRNA-1
chr5_4	exon	61913325	61913567	61913325	ID=Msa0862290-mRNA-1:exon:19231;Parent=Msa0862290-mRNA-1
chr5_4	exon	61913763	61914053	61913763	ID=Msa0862290-mRNA-1:exon:19232;Parent=Msa0862290-mRNA-1
chr5_4	exon	61914824	61915283	61914824	ID=Msa0862290-mRNA-1:exon:19233;Parent=Msa0862290-mRNA-1
chr5_4	five_prime_UTR	61912148	61912158	61912148	ID=Msa0862290-mRNA-1:five_prime_utr;Parent=Msa0862290-mRNA-1
chr5_4	CDS	61912159	61912232	61912159	ID=Msa0862290-mRNA-1:cds;Parent=Msa0862290-mRNA-1
chr5_4	CDS	61912316	61912433	61912316	ID=Msa0862290-mRNA-1:cds;Parent=Msa0862290-mRNA-1
chr5_4	CDS	61913325	61913567	61913325	ID=Msa0862290-mRNA-1:cds;Parent=Msa0862290-mRNA-1
chr5_4	CDS	61913763	61914053	61913763	ID=Msa0862290-mRNA-1:cds;Parent=Msa0862290-mRNA-1
chr5_4	CDS	61914824	61915102	61914824	ID=Msa0862290-mRNA-1:cds;Parent=Msa0862290-mRNA-1
chr5_4	three_prime_UTR	61915103	61915283	61915103	ID=Msa0862290-mRNA-1:three_prime_utr;Parent=Msa0862290-mRNA-1

Gene Sequence

>Msa0862290

ATGGTAGATATTTTCCTAAGAGCATCACCTAAGCTACTTCACTGTACTTCTTCTTATCCTCTCATTCATCAAAGGGGAGTGTCAAGAAAAACACAGTTGAAGTGTTCACTTGATCTTTCAAGTAAGGTTCTGACTAAACATGTTTTATCTGGTCTTGCTGCTTCCTTGATATTTATCTCTCCAGCAAATCAGTCTGTAGCAGCAGATCTATATTCTCATCAACAAAACATATGCCAGCTTGCTATTGCCAGTGAAAATGCAGTTAGTTCACCATTTGAGAATGAGTCCAGTGAAAACAGCGAAAATCTTATGATGATGAGAGGTATGACAGCCAAGAATTTTGACCCTATCAGATATTCAGGAAGATGGTTTGAAGTTGCTTCACTCAAACGCGGTTTTGCTGGAGCAGGCCAAGAAGACTGTCATTGCACTCAGGGTGTGTATACATTTGATAGGGAAAAACCAGCTATCCAAGTTGATACTTTTTGTGTTCATGGGGGCCCTGATGGGTATATAACTGGCATTAGGGGAAGGGTTCAATGTCTTTCACAAGAAGATTTGGTGAAAAATGAGACACAACTTGAGACGCAGGAGATGATCAAAGGAAAATGCTTTCTCCGCTTTCCAACATTGCCGTTCATTCCCAAGGAGCCTTATGATGTGATTGCTACTGATTATGACAATTATGCTCTTGTTTCTGGAGCTAAGGACACAAGTTTTGTTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAATACAAAACTTACCTTGCAGATTATGGCTATAATCCAAGCGAAATTAAAGATACACCTCAAGATTGTGAAGTAATGTCCAATAGTAAACTGGCAGCTATGATGTCCATGCCAGGGATGCAACAGGCACTAACAAACCAATTTCCTGATCTTGAACTGAAGGGCTCTGTTGCATTTGATCCACTCACAAGTGTATTTGAAACTCTGAAGAAGCTTGTTGAGCTTTATTTTAAGTAG

Protein sequence

>Msa0862290

MVDIFLRASPKLLHCTSSYPLIHQRGVSRKTQLKCSLDLSSKVLTKHVLSGLAASLIFISPANQSVAADLYSHQQNICQLAIASENAVSSPFENESSENSENLMMMRGMTAKNFDPIRYSGRWFEVASLKRGFAGAGQEDCHCTQGVYTFDREKPAIQVDTFCVHGGPDGYITGIRGRVQCLSQEDLVKNETQLETQEMIKGKCFLRFPTLPFIPKEPYDVIATDYDNYALVSGAKDTSFVQIYSRTPNPGPEFIEKYKTYLADYGYNPSEIKDTPQDCEVMSNSKLAAMMSMPGMQQALTNQFPDLELKGSVAFDPLTSVFETLKKLVELYFK*