AlfalfaGEDB | Msa0823420

M. sativa cultivar zhongmu-4 / Msa0823420

KEGG: -
GO: GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
PFAM: PF08212.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0823420	XP_003617483.2	95.210	334	14	1	1	332	1	334	0.0	642

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0823420	sp\|Q9STS7\|CHL_ARATH	68.502	327	88	6	11	332	37	353	8.10e-155	441

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0823420	G7K3G5	95.210	334	14	1	1	332	1	334	0.0	642

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0636720	Msa0823420	0.800748	1.245974e-48	-8.615850e-47
Msa0644630	Msa0823420	0.812092	5.044219e-51	-8.615850e-47
Msa0742160	Msa0823420	0.988576	1.450377e-174	-8.615850e-47
Msa0786060	Msa0823420	0.994402	5.873118e-207	-8.615850e-47
Msa0823420	Msa0862290	0.988864	1.010292e-175	-8.615850e-47
Msa0175670	Msa0823420	0.803014	4.266128e-49	-8.615850e-47
Msa0197030	Msa0823420	0.806391	8.414573e-50	-8.615850e-47
Msa0316610	Msa0823420	0.807605	4.658308e-50	-8.615850e-47
Msa0525280	Msa0823420	0.803503	3.379714e-49	-8.615850e-47
Msa0548210	Msa0823420	0.823682	1.214554e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0823420	MtrunA17_Chr5g0443651	95.210	334	14	1	1	332	1	334	0.0	642

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0823420	AT3G47860.1	68.502	327	88	6	11	332	37	353	8.23e-156	441

Find 68 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAATTATGCTCTTGTTTC+TGG	0.024981	5_3:-62093054	Msa0823420:CDS
AAAACTTACCTTGCAGATTA+TGG	0.223001	5_3:-62092188	Msa0823420:CDS
TTACTAAATTCTTTGCATTA+AGG	0.241023	5_3:-62091805	Msa0823420:three_prime_UTR
TCAGTTCAAGATCAGGAAAT+TGG	0.260295	5_3:+62092057	None:intergenic
TTTGACCCTATCAGATATTC+AGG	0.279436	5_3:-62093588	Msa0823420:CDS
GAGTGCAATGACAGTCTTCT+TGG	0.317907	5_3:+62093517	None:intergenic
ATTTATCTCTCCAGCAAATC+AGG	0.333389	5_3:-62094648	Msa0823420:intron
TTGTATTTCTCTATAAATTC+AGG	0.336114	5_3:+62092209	None:intergenic
CATCTTCCTGAATATCTGAT+AGG	0.337240	5_3:+62093582	None:intergenic
ATGGGTATATAACTGGCATT+AGG	0.339085	5_3:-62093227	Msa0823420:CDS
TCTGATAGGGTCAAAATTCT+TGG	0.339639	5_3:+62093596	None:intergenic
CATAGCTGCCAGTTTACTAT+TGG	0.341261	5_3:+62092115	None:intergenic
ACAATACAAACCTGATTTGC+TGG	0.354372	5_3:+62094638	None:intergenic
TTCACTTGATCTTTCAAGTA+AGG	0.357987	5_3:-62094714	Msa0823420:CDS
ATGTCTTTCACAAGAAGATT+TGG	0.359868	5_3:-62093193	Msa0823420:CDS
AACACAATCATTAAAATTCA+AGG	0.367727	5_3:+62091844	None:intergenic
GTTAGTGCCTGTTGCATCCC+TGG	0.384685	5_3:+62092083	None:intergenic
TTCTCTATAAATTCAGGTCC+AGG	0.399668	5_3:+62092215	None:intergenic
AGAGCTTAGGTGATGCTCTT+AGG	0.401177	5_3:+62094881	None:intergenic
TGGGTATATAACTGGCATTA+GGG	0.407261	5_3:-62093226	Msa0823420:CDS
AGGGTGTGTATACATTTGAT+AGG	0.419310	5_3:-62093299	Msa0823420:CDS
AGTAATGTCCAATAGTAAAC+TGG	0.423649	5_3:-62092123	Msa0823420:CDS
TCACTGGACTCATTCTCAAA+TGG	0.439527	5_3:+62093657	None:intergenic
TGCTCTTGTTTCTGGAGCTA+AGG	0.441426	5_3:-62093046	Msa0823420:CDS
GGCCCTGATGGGTATATAAC+TGG	0.444525	5_3:-62093234	Msa0823420:CDS
ATAAATTCAGGTCCAGGGTT+AGG	0.446321	5_3:+62092221	None:intergenic
AAAGTATCAACTTGGATAGC+TGG	0.451315	5_3:+62093270	None:intergenic
ATGCCAGTTATATACCCATC+AGG	0.453847	5_3:+62093231	None:intergenic
GGTGTATCTTTAATTTCGCT+TGG	0.461443	5_3:+62092158	None:intergenic
TCAGTAGCAATCACATCATA+AGG	0.465892	5_3:+62093081	None:intergenic
ATCACATCATAAGGCTCCTT+GGG	0.467344	5_3:+62093090	None:intergenic
CTATCAGATATTCAGGAAGA+TGG	0.471288	5_3:-62093581	Msa0823420:CDS
GTCCATGCCAGGGATGCAAC+AGG	0.473508	5_3:-62092090	Msa0823420:CDS
AATCACATCATAAGGCTCCT+TGG	0.473774	5_3:+62093089	None:intergenic
TAAGAAGAAGTACAGAGCTT+AGG	0.479385	5_3:+62094868	None:intergenic
TTGGGAATGAACGGCAATGT+TGG	0.490083	5_3:+62093108	None:intergenic
GAGCCCTTCAGTTCAAGATC+AGG	0.499745	5_3:+62092050	None:intergenic
AACATTGCCGTTCATTCCCA+AGG	0.502752	5_3:-62093106	Msa0823420:CDS
GCAGCTATGATGTCCATGCC+AGG	0.511229	5_3:-62092101	Msa0823420:CDS
ATTTCCTGATCTTGAACTGA+AGG	0.514630	5_3:-62092054	Msa0823420:CDS
TCTCTATAAATTCAGGTCCA+GGG	0.519094	5_3:+62092216	None:intergenic
ATATAACTGGCATTAGGGGA+AGG	0.531773	5_3:-62093221	Msa0823420:CDS
ATCTTCCTGAATATCTGATA+GGG	0.534452	5_3:+62093583	None:intergenic
CTTATCCTCTCATTCATCAA+AGG	0.536489	5_3:-62094849	Msa0823420:intron
GGGTGTGTATACATTTGATA+GGG	0.537787	5_3:-62093298	Msa0823420:CDS
TGCTGGAGAGATAAATATCA+AGG	0.541440	5_3:+62094655	None:intergenic
GACATTACTTCACAATCTTG+AGG	0.543352	5_3:+62092137	None:intergenic
CTAAATTCTTTGCATTAAGG+AGG	0.548450	5_3:-62091802	Msa0823420:three_prime_UTR
TTTCACTGGCAATAGCAAGC+TGG	0.550592	5_3:+62093694	None:intergenic
TGCCTGTTGCATCCCTGGCA+TGG	0.552579	5_3:+62092088	None:intergenic
TATAACTGGCATTAGGGGAA+GGG	0.559959	5_3:-62093220	Msa0823420:CDS
TGGTACCTTTGATGAATGAG+AGG	0.565747	5_3:+62094844	None:intergenic
TTTCCTGATCTTGAACTGAA+GGG	0.583532	5_3:-62092053	Msa0823420:CDS
GTTTCAAATACACTTGTGAG+TGG	0.612175	5_3:+62092014	None:intergenic
TAAGGCTCCTTGGGAATGAA+CGG	0.612716	5_3:+62093099	None:intergenic
TGAGACACAACTTGAGACGC+AGG	0.613938	5_3:-62093163	Msa0823420:CDS
AGAAGACTGTCATTGCACTC+AGG	0.620753	5_3:-62093514	Msa0823420:intron
GAGACGCAGGAGATGATCAA+AGG	0.621662	5_3:-62093150	Msa0823420:CDS
GATTATAGCCATAATCTGCA+AGG	0.627467	5_3:+62092180	None:intergenic
TACTCAAGGACACCTAACCC+TGG	0.635374	5_3:-62092233	Msa0823420:CDS
GAAAATCTTATGATGATGAG+AGG	0.636432	5_3:-62093627	Msa0823420:CDS
AAATTGAGAAAGCAAAGTCA+TGG	0.636574	5_3:-62094914	None:intergenic
TGCCAGTTATATACCCATCA+GGG	0.636591	5_3:+62093232	None:intergenic
GGGTATATAACTGGCATTAG+GGG	0.637286	5_3:-62093225	Msa0823420:CDS
CAGCTATGATGTCCATGCCA+GGG	0.657155	5_3:-62092100	Msa0823420:CDS
CAATATTACAGATATACTCA+AGG	0.664599	5_3:-62092247	Msa0823420:intron
TGAACGGCAATGTTGGAAAG+CGG	0.667583	5_3:+62093115	None:intergenic
GAAGTTGCTTCACTCAAACG+CGG	0.736177	5_3:-62093555	Msa0823420:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCTTAAATTATTTATTAG+TGG	-	chr5_3:62094363-62094382	Msa0823420:intron	10.0%
!!!	TATACAGATTTTAATTATAG+TGG	-	chr5_3:62092166-62092185	Msa0823420:CDS	15.0%
!!	TTGTAACTTTAATACATTTA+TGG	+	chr5_3:62092324-62092343	None:intergenic	15.0%
!!!	AATTTGCTTATAATTCATTT+CGG	+	chr5_3:62092586-62092605	None:intergenic	15.0%
!!!	AAATTTTACTTCATCTATTT+TGG	-	chr5_3:62092601-62092620	Msa0823420:intron	15.0%
!!!	AGGCAATAATTTTTTTTTAT+TGG	-	chr5_3:62092695-62092714	Msa0823420:intron	15.0%
!!!	TTCTTCTAAATTTTAATTGA+TGG	-	chr5_3:62094016-62094035	Msa0823420:intron	15.0%
!!	GTTACAACAATAATTGATAA+TGG	+	chr5_3:62091920-62091939	None:intergenic	20.0%
!!!	TTTTTTTTATTGGATTGCAT+AGG	-	chr5_3:62092705-62092724	Msa0823420:intron	20.0%
!!	AATAAATATAGTCTGTGTTT+AGG	-	chr5_3:62093228-62093247	Msa0823420:CDS	20.0%
!!	AGTATATAAATGACATTTCA+GGG	-	chr5_3:62093387-62093406	Msa0823420:intron	20.0%
!!!	TAAATTTTAATTGATGGCAA+TGG	-	chr5_3:62094022-62094041	Msa0823420:intron	20.0%
!!	ATATCTGTAATATTGATCAA+GGG	+	chr5_3:62094453-62094472	None:intergenic	20.0%
!!	TATATCTGTAATATTGATCA+AGG	+	chr5_3:62094454-62094473	None:intergenic	20.0%
!!	TTGTATTTCTCTATAAATTC+AGG	+	chr5_3:62094499-62094518	None:intergenic	20.0%
!!	AACACAATCATTAAAATTCA+AGG	+	chr5_3:62094864-62094883	None:intergenic	20.0%
!!	TTACTAAATTCTTTGCATTA+AGG	-	chr5_3:62094900-62094919	Msa0823420:exon	20.0%
!	AAAATAAAGAGAGTTGAGTT+TGG	+	chr5_3:62091884-62091903	None:intergenic	25.0%
!	TAGTAAAATTCTTAGAGTTG+TGG	+	chr5_3:62092124-62092143	None:intergenic	25.0%
!	TATATGATTCCAAAATCACA+TGG	-	chr5_3:62092208-62092227	Msa0823420:CDS	25.0%
!!!	TCTTATGCTTGTAGTTTTAT+GGG	+	chr5_3:62092416-62092435	None:intergenic	25.0%
!	AAATCCACAGAAAAACATAA+TGG	+	chr5_3:62092545-62092564	None:intergenic	25.0%
!	GTATTAGTTATGACTTATGA+AGG	-	chr5_3:62092665-62092684	Msa0823420:intron	25.0%
!	TGACTTATGAAGGTTAATTT+AGG	-	chr5_3:62092675-62092694	Msa0823420:intron	25.0%
!	TACACATGTTAAGAAAAAGT+AGG	+	chr5_3:62092744-62092763	None:intergenic	25.0%
!	GAACAATGTTAAGTTAACAA+GGG	+	chr5_3:62093270-62093289	None:intergenic	25.0%
!	TGAACAATGTTAAGTTAACA+AGG	+	chr5_3:62093271-62093290	None:intergenic	25.0%
!	CATATTAATATCAAGAAGCA+TGG	+	chr5_3:62093367-62093386	None:intergenic	25.0%
!	GAGTATATAAATGACATTTC+AGG	-	chr5_3:62093386-62093405	Msa0823420:intron	25.0%
!!!	TTGATACTTTTTGTGTTCAT+GGG	-	chr5_3:62093448-62093467	Msa0823420:intron	25.0%
!	AATAAGCTGAAAACAGATTA+TGG	+	chr5_3:62093824-62093843	None:intergenic	25.0%
!!	AATCATGTCTTGATAATTTG+TGG	-	chr5_3:62094163-62094182	Msa0823420:intron	25.0%
!	AACTAGTATATGTGTTAACT+TGG	+	chr5_3:62094234-62094253	None:intergenic	25.0%
!	TAATTGAATGTAATATGCGT+TGG	+	chr5_3:62094336-62094355	None:intergenic	25.0%
!	AATATTATGAATTACGACAC+CGG	+	chr5_3:62094411-62094430	None:intergenic	25.0%
!	CAATATTACAGATATACTCA+AGG	-	chr5_3:62094458-62094477	Msa0823420:intron	25.0%
!!!	TTTTGTTTCTAGACAATGCA+GGG	-	chr5_3:62091940-62091959	Msa0823420:three_prime_UTR	30.0%
!	TTCACTTGATCTTTCAAGTA+AGG	-	chr5_3:62091991-62092010	Msa0823420:CDS	30.0%
!	CTGACTAAACATGTTTTATC+TGG	-	chr5_3:62092016-62092035	Msa0823420:CDS	30.0%
!!	GTCTTATGCTTGTAGTTTTA+TGG	+	chr5_3:62092417-62092436	None:intergenic	30.0%
	TTGAAGTTTCGATACATTCA+AGG	-	chr5_3:62092453-62092472	Msa0823420:intron	30.0%
	TTGCTTATAATTCATTTCGG+AGG	+	chr5_3:62092583-62092602	None:intergenic	30.0%
	TTGCTTATATTTCAGTCTAG+AGG	-	chr5_3:62092777-62092796	Msa0823420:intron	30.0%
!	TCTAGAGGAAGTAGATATTT+TGG	-	chr5_3:62092792-62092811	Msa0823420:intron	30.0%
!	CTAGAGGAAGTAGATATTTT+GGG	-	chr5_3:62092793-62092812	Msa0823420:intron	30.0%
	CACTCTTTAATATGACCATA+TGG	-	chr5_3:62092822-62092841	Msa0823420:intron	30.0%
	CATTTGTAAGAACTTCCATA+TGG	+	chr5_3:62092840-62092859	None:intergenic	30.0%
!	GAAAATCTTATGATGATGAG+AGG	-	chr5_3:62093078-62093097	Msa0823420:CDS	30.0%
	ATCTTCCTGAATATCTGATA+GGG	+	chr5_3:62093125-62093144	None:intergenic	30.0%
	AGTTAACAAGGGAAATAAGT+TGG	+	chr5_3:62093259-62093278	None:intergenic	30.0%
	AAATAGATTCTATGCACATG+TGG	+	chr5_3:62093330-62093349	None:intergenic	30.0%
!!	GAACACAAAAAGTATCAACT+TGG	+	chr5_3:62093446-62093465	None:intergenic	30.0%
!!	GTTGATACTTTTTGTGTTCA+TGG	-	chr5_3:62093447-62093466	Msa0823420:intron	30.0%
!!	TGATACTTTTTGTGTTCATG+GGG	-	chr5_3:62093449-62093468	Msa0823420:intron	30.0%
	ATGTCTTTCACAAGAAGATT+TGG	-	chr5_3:62093512-62093531	Msa0823420:intron	30.0%
	TTAATAGCTATGAGTTAGCA+AGG	-	chr5_3:62094107-62094126	Msa0823420:intron	30.0%
	TAATAGCTATGAGTTAGCAA+GGG	-	chr5_3:62094108-62094127	Msa0823420:intron	30.0%
	AAAACTTACCTTGCAGATTA+TGG	-	chr5_3:62094517-62094536	Msa0823420:intron	30.0%
	AGTAATGTCCAATAGTAAAC+TGG	-	chr5_3:62094582-62094601	Msa0823420:intron	30.0%
	CTAAATTCTTTGCATTAAGG+AGG	-	chr5_3:62094903-62094922	Msa0823420:exon	30.0%
!	TAAGAAGAAGTACAGAGCTT+AGG	+	chr5_3:62091840-62091859	None:intergenic	35.0%
	CTTATCCTCTCATTCATCAA+AGG	-	chr5_3:62091856-62091875	Msa0823420:three_prime_UTR	35.0%
!!!	CTTTTGTTTCTAGACAATGC+AGG	-	chr5_3:62091939-62091958	Msa0823420:three_prime_UTR	35.0%
!!	TTTGTTTCTAGACAATGCAG+GGG	-	chr5_3:62091941-62091960	Msa0823420:three_prime_UTR	35.0%
	TGCTGGAGAGATAAATATCA+AGG	+	chr5_3:62092053-62092072	None:intergenic	35.0%
	ATTTATCTCTCCAGCAAATC+AGG	-	chr5_3:62092057-62092076	Msa0823420:CDS	35.0%
!	ACAATACAAACCTGATTTGC+TGG	+	chr5_3:62092070-62092089	None:intergenic	35.0%
!	AGCTAATGTCCATGTGATTT+TGG	+	chr5_3:62092220-62092239	None:intergenic	35.0%
!!	GTGTAGTGTTTTTGTCGTTT+TGG	-	chr5_3:62092390-62092409	Msa0823420:intron	35.0%
	CTTATAATTCATTTCGGAGG+AGG	+	chr5_3:62092580-62092599	None:intergenic	35.0%
	ATGGAAGTTCTTACAAATGC+TGG	-	chr5_3:62092841-62092860	Msa0823420:intron	35.0%
!	CTACAGACTGTTGATGAAAA+AGG	+	chr5_3:62092957-62092976	None:intergenic	35.0%
!	TGAACTAACTGCATTTTCAC+TGG	+	chr5_3:62093028-62093047	None:intergenic	35.0%
!!	AAGATTTTCGCTGTTTTCAC+TGG	+	chr5_3:62093067-62093086	None:intergenic	35.0%
	TCTGATAGGGTCAAAATTCT+TGG	+	chr5_3:62093112-62093131	None:intergenic	35.0%
	TTTGACCCTATCAGATATTC+AGG	-	chr5_3:62093117-62093136	Msa0823420:CDS	35.0%
	CATCTTCCTGAATATCTGAT+AGG	+	chr5_3:62093126-62093145	None:intergenic	35.0%
	CTATCAGATATTCAGGAAGA+TGG	-	chr5_3:62093124-62093143	Msa0823420:CDS	35.0%
	TGTTCACAACTAACTGTTGA+AGG	-	chr5_3:62093285-62093304	Msa0823420:CDS	35.0%
	GTTCACAACTAACTGTTGAA+GGG	-	chr5_3:62093286-62093305	Msa0823420:CDS	35.0%
	TTCACAACTAACTGTTGAAG+GGG	-	chr5_3:62093287-62093306	Msa0823420:CDS	35.0%
!	AATATCAAGAAGCATGGTCA+TGG	+	chr5_3:62093361-62093380	None:intergenic	35.0%
	AGGGTGTGTATACATTTGAT+AGG	-	chr5_3:62093406-62093425	Msa0823420:intron	35.0%
	GGGTGTGTATACATTTGATA+GGG	-	chr5_3:62093407-62093426	Msa0823420:intron	35.0%
!	AAAGTATCAACTTGGATAGC+TGG	+	chr5_3:62093438-62093457	None:intergenic	35.0%
!!	GATACTTTTTGTGTTCATGG+GGG	-	chr5_3:62093450-62093469	Msa0823420:intron	35.0%
	ATGGGTATATAACTGGCATT+AGG	-	chr5_3:62093478-62093497	Msa0823420:intron	35.0%
	TGGGTATATAACTGGCATTA+GGG	-	chr5_3:62093479-62093498	Msa0823420:intron	35.0%
	TCAGTAGCAATCACATCATA+AGG	+	chr5_3:62093627-62093646	None:intergenic	35.0%
!	GACAATTATGCTCTTGTTTC+TGG	-	chr5_3:62093651-62093670	Msa0823420:CDS	35.0%
!!!	TAAGGACACAAGTTTTGTTC+AGG	-	chr5_3:62093677-62093696	Msa0823420:CDS	35.0%
!!	CTTATTTCTATAAGCTCTCC+AGG	-	chr5_3:62093838-62093857	Msa0823420:intron	35.0%
	CAAGTTTATCAACTCTTTCC+TGG	+	chr5_3:62094190-62094209	None:intergenic	35.0%
	TCTCTATAAATTCAGGTCCA+GGG	+	chr5_3:62094492-62094511	None:intergenic	35.0%
	TTCTCTATAAATTCAGGTCC+AGG	+	chr5_3:62094493-62094512	None:intergenic	35.0%
	GATTATAGCCATAATCTGCA+AGG	+	chr5_3:62094528-62094547	None:intergenic	35.0%
!	GGTGTATCTTTAATTTCGCT+TGG	+	chr5_3:62094550-62094569	None:intergenic	35.0%
	GACATTACTTCACAATCTTG+AGG	+	chr5_3:62094571-62094590	None:intergenic	35.0%
	TCAGTTCAAGATCAGGAAAT+TGG	+	chr5_3:62094651-62094670	None:intergenic	35.0%
	ATTTCCTGATCTTGAACTGA+AGG	-	chr5_3:62094651-62094670	Msa0823420:CDS	35.0%
	TTTCCTGATCTTGAACTGAA+GGG	-	chr5_3:62094652-62094671	Msa0823420:CDS	35.0%
	GTTTCAAATACACTTGTGAG+TGG	+	chr5_3:62094694-62094713	None:intergenic	35.0%
	TGGTACCTTTGATGAATGAG+AGG	+	chr5_3:62091864-62091883	None:intergenic	40.0%
	ATCACATGGACATTAGCTAG+AGG	-	chr5_3:62092222-62092241	Msa0823420:CDS	40.0%
	CGAATGTGTCTTTCTCTAGT+CGG	-	chr5_3:62092353-62092372	Msa0823420:intron	40.0%
!	AGCGCCATTATGTTTTTCTG+TGG	-	chr5_3:62092538-62092557	Msa0823420:intron	40.0%
!	CAGACTGTTGATGAAAAAGG+TGG	+	chr5_3:62092954-62092973	None:intergenic	40.0%
	TCACTGGACTCATTCTCAAA+TGG	+	chr5_3:62093051-62093070	None:intergenic	40.0%
	TCACAACTAACTGTTGAAGG+GGG	-	chr5_3:62093288-62093307	Msa0823420:CDS	40.0%
	TGCCAGTTATATACCCATCA+GGG	+	chr5_3:62093476-62093495	None:intergenic	40.0%
	ATGCCAGTTATATACCCATC+AGG	+	chr5_3:62093477-62093496	None:intergenic	40.0%
	GGGTATATAACTGGCATTAG+GGG	-	chr5_3:62093480-62093499	Msa0823420:intron	40.0%
	ATATAACTGGCATTAGGGGA+AGG	-	chr5_3:62093484-62093503	Msa0823420:intron	40.0%
	TATAACTGGCATTAGGGGAA+GGG	-	chr5_3:62093485-62093504	Msa0823420:intron	40.0%
	ATCACATCATAAGGCTCCTT+GGG	+	chr5_3:62093618-62093637	None:intergenic	40.0%
	AATCACATCATAAGGCTCCT+TGG	+	chr5_3:62093619-62093638	None:intergenic	40.0%
!!	GTTGTTTTCATGAGCTATCC+TGG	+	chr5_3:62093859-62093878	None:intergenic	40.0%
!	GTCTTGATAATTTGTGGTCC+AGG	-	chr5_3:62094169-62094188	Msa0823420:intron	40.0%
	CGTTTGTAGCACCAATATAC+CGG	-	chr5_3:62094262-62094281	Msa0823420:intron	40.0%
!!	AATATGCGTTGGTGTCATGT+CGG	+	chr5_3:62094325-62094344	None:intergenic	40.0%
	ATAAATTCAGGTCCAGGGTT+AGG	+	chr5_3:62094487-62094506	None:intergenic	40.0%
	CATAGCTGCCAGTTTACTAT+TGG	+	chr5_3:62094593-62094612	None:intergenic	40.0%
	AGAGCTTAGGTGATGCTCTT+AGG	+	chr5_3:62091827-62091846	None:intergenic	45.0%
	TTTCACTGGCAATAGCAAGC+TGG	+	chr5_3:62093014-62093033	None:intergenic	45.0%
	GAAGTTGCTTCACTCAAACG+CGG	-	chr5_3:62093150-62093169	Msa0823420:CDS	45.0%
	GAGTGCAATGACAGTCTTCT+TGG	+	chr5_3:62093191-62093210	None:intergenic	45.0%
	AGAAGACTGTCATTGCACTC+AGG	-	chr5_3:62093191-62093210	Msa0823420:CDS	45.0%
	TGAACGGCAATGTTGGAAAG+CGG	+	chr5_3:62093593-62093612	None:intergenic	45.0%
	TTGGGAATGAACGGCAATGT+TGG	+	chr5_3:62093600-62093619	None:intergenic	45.0%
	AACATTGCCGTTCATTCCCA+AGG	-	chr5_3:62093599-62093618	Msa0823420:CDS	45.0%
	TAAGGCTCCTTGGGAATGAA+CGG	+	chr5_3:62093609-62093628	None:intergenic	45.0%
!!	TGCTCTTGTTTCTGGAGCTA+AGG	-	chr5_3:62093659-62093678	Msa0823420:CDS	45.0%
	GTAGCACCAATATACCGGAT+TGG	-	chr5_3:62094267-62094286	Msa0823420:intron	45.0%
	CTACTTGTCAGTGTCATGTC+CGG	-	chr5_3:62094389-62094408	Msa0823420:intron	45.0%
!	TCACTCAAACGCGGTTTTGC+TGG	-	chr5_3:62093159-62093178	Msa0823420:CDS	50.0%
	CAACTAACTGTTGAAGGGGG+AGG	-	chr5_3:62093291-62093310	Msa0823420:CDS	50.0%
!	GGCCCTGATGGGTATATAAC+TGG	-	chr5_3:62093471-62093490	Msa0823420:intron	50.0%
	TGAGACACAACTTGAGACGC+AGG	-	chr5_3:62093542-62093561	Msa0823420:CDS	50.0%
	GAGACGCAGGAGATGATCAA+AGG	-	chr5_3:62093555-62093574	Msa0823420:CDS	50.0%
!	GCACCAATATACCGGATTGG+TGG	-	chr5_3:62094270-62094289	Msa0823420:intron	50.0%
	ACGCCACCAATCCGGTATAT+TGG	+	chr5_3:62094276-62094295	None:intergenic	50.0%
	CACTGACATGTGTGAGACAC+CGG	+	chr5_3:62094301-62094320	None:intergenic	50.0%
	TACTCAAGGACACCTAACCC+TGG	-	chr5_3:62094472-62094491	Msa0823420:intron	50.0%
	CAGCTATGATGTCCATGCCA+GGG	-	chr5_3:62094605-62094624	Msa0823420:intron	50.0%
	GAGCCCTTCAGTTCAAGATC+AGG	+	chr5_3:62094658-62094677	None:intergenic	50.0%
!	AAACGCGGTTTTGCTGGAGC+AGG	-	chr5_3:62093165-62093184	Msa0823420:CDS	55.0%
	GACTGTCATTGCACTCAGGC+AGG	-	chr5_3:62093195-62093214	Msa0823420:CDS	55.0%
	GCAGCTATGATGTCCATGCC+AGG	-	chr5_3:62094604-62094623	Msa0823420:intron	55.0%
	GTTAGTGCCTGTTGCATCCC+TGG	+	chr5_3:62094625-62094644	None:intergenic	55.0%
	TGTGTTCATGGGGGCCCTGA+TGG	-	chr5_3:62093459-62093478	Msa0823420:intron	60.0%
	GTGTTCATGGGGGCCCTGAT+GGG	-	chr5_3:62093460-62093479	Msa0823420:intron	60.0%
!!	TACCGGATTGGTGGCGTGTC+CGG	-	chr5_3:62094279-62094298	Msa0823420:intron	60.0%
	GTCCATGCCAGGGATGCAAC+AGG	-	chr5_3:62094615-62094634	Msa0823420:intron	60.0%
	TGCCTGTTGCATCCCTGGCA+TGG	+	chr5_3:62094620-62094639	None:intergenic	60.0%
	CACCGGACACGCCACCAATC+CGG	+	chr5_3:62094284-62094303	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	62091799	62094928	62091799	ID=Msa0823420;Name=Msa0823420
chr5_3	mRNA	62091799	62094928	62091799	ID=Msa0823420-mRNA-1;Parent=Msa0823420;Name=Msa0823420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=11\|1\|1\|1\|1\|1\|5\|181\|332
chr5_3	exon	62091799	62092258	62091799	ID=Msa0823420-mRNA-1:exon:19301;Parent=Msa0823420-mRNA-1
chr5_3	exon	62093029	62093319	62093029	ID=Msa0823420-mRNA-1:exon:19300;Parent=Msa0823420-mRNA-1
chr5_3	exon	62093515	62093757	62093515	ID=Msa0823420-mRNA-1:exon:19299;Parent=Msa0823420-mRNA-1
chr5_3	exon	62094649	62094766	62094649	ID=Msa0823420-mRNA-1:exon:19298;Parent=Msa0823420-mRNA-1
chr5_3	exon	62094850	62094928	62094850	ID=Msa0823420-mRNA-1:exon:19297;Parent=Msa0823420-mRNA-1
chr5_3	five_prime_UTR	62094918	62094928	62094918	ID=Msa0823420-mRNA-1:five_prime_utr;Parent=Msa0823420-mRNA-1
chr5_3	CDS	62094850	62094917	62094850	ID=Msa0823420-mRNA-1:cds;Parent=Msa0823420-mRNA-1
chr5_3	CDS	62094649	62094766	62094649	ID=Msa0823420-mRNA-1:cds;Parent=Msa0823420-mRNA-1
chr5_3	CDS	62093515	62093757	62093515	ID=Msa0823420-mRNA-1:cds;Parent=Msa0823420-mRNA-1
chr5_3	CDS	62093029	62093319	62093029	ID=Msa0823420-mRNA-1:cds;Parent=Msa0823420-mRNA-1
chr5_3	CDS	62091980	62092258	62091980	ID=Msa0823420-mRNA-1:cds;Parent=Msa0823420-mRNA-1
chr5_3	three_prime_UTR	62091799	62091979	62091799	ID=Msa0823420-mRNA-1:three_prime_utr;Parent=Msa0823420-mRNA-1

Gene Sequence

>Msa0823420

ATGGTAGATATTTTCCTAAGAGCATCACCTAAGCTCTGTACTTCTTCTTATCCTCTCATTCATCAAAGGGGAGTGTCAAGAAAAACACAGTTGAAGTGTTCACTTGATCTTTCAAGTAAGGTTCTGACTAAACATGTTTTATCTGGTCTTGCTGCTTCCTTGATATTTATCTCTCCAGCAAATCAGTCTGTAGCAGCAGATCTATATTCTCATCAACAAAACATATGCCAGCTTGCTATTGCCAGTGAAAATGCAGTTAGTTCACCATTTGAGAATGAGTCCAGTGAAAACAGCGAAAATCTTATGATGATGAGAGGTATGACAGCCAAGAATTTTGACCCTATCAGATATTCAGGAAGATGGTTTGAAGTTGCTTCACTCAAACGCGGTTTTGCTGGAGCAGGCCAAGAAGACTGTCATTGCACTCAGGGTGTGTATACATTTGATAGGGAAAAACCAGCTATCCAAGTTGATACTTTTTGTGTTCATGGGGGCCCTGATGGGTATATAACTGGCATTAGGGGAAGGGTTCAATGTCTTTCACAAGAAGATTTGGTGAAAAATGAGACACAACTTGAGACGCAGGAGATGATCAAAGGAAAATGCTTTCTCCGCTTTCCAACATTGCCGTTCATTCCCAAGGAGCCTTATGATGTGATTGCTACTGATTATGACAATTATGCTCTTGTTTCTGGAGCTAAGGACACAAGTTTTGTTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAATACAAAACTTACCTTGCAGATTATGGCTATAATCCAAGCGAAATTAAAGATACACCTCAAGATTGTGAAGTAATGTCCAATAGTAAACTGGCAGCTATGATGTCCATGCCAGGGATGCAACAGGCACTAACAAACCAATTTCCTGATCTTGAACTGAAGGGCTCTGTTGCATTTGATCCACTCACAAGTGTATTTGAAACTCTGAAGAAGCTTGTTGAGCTTTATTTTAAGTAG

Protein sequence

>Msa0823420

MVDIFLRASPKLCTSSYPLIHQRGVSRKTQLKCSLDLSSKVLTKHVLSGLAASLIFISPANQSVAADLYSHQQNICQLAIASENAVSSPFENESSENSENLMMMRGMTAKNFDPIRYSGRWFEVASLKRGFAGAGQEDCHCTQGVYTFDREKPAIQVDTFCVHGGPDGYITGIRGRVQCLSQEDLVKNETQLETQEMIKGKCFLRFPTLPFIPKEPYDVIATDYDNYALVSGAKDTSFVQIYSRTPNPGPEFIEKYKTYLADYGYNPSEIKDTPQDCEVMSNSKLAAMMSMPGMQQALTNQFPDLELKGSVAFDPLTSVFETLKKLVELYFK*