AlfalfaGEDB | Msa0742160

M. sativa cultivar zhongmu-4 / Msa0742160

KEGG: -
GO: GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
PFAM: PF08212.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742160	XP_003617483.2	95.808	334	14	0	1	334	1	334	0.0	652

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742160	sp\|Q9STS7\|CHL_ARATH	69.841	315	86	5	25	334	43	353	2.14e-154	439

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742160	G7K3G5	95.808	334	14	0	1	334	1	334	0.0	652

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0609790	Msa0742160	0.807924	3.985683e-50	-8.615850e-47
Msa0636720	Msa0742160	0.813551	2.417795e-51	-8.615850e-47
Msa0644630	Msa0742160	0.808445	3.086175e-50	-8.615850e-47
Msa0742160	Msa0786060	0.989114	9.432968e-177	-8.615850e-47
Msa0742160	Msa0823420	0.988576	1.450377e-174	-8.615850e-47
Msa0742160	Msa0862290	0.997315	2.139247e-240	-8.615850e-47
Msa0742160	Msa0929940	0.803231	3.847042e-49	-8.615850e-47
Msa0742160	Msa1069960	0.817190	3.749740e-52	-8.615850e-47
Msa0742160	Msa1119860	0.814338	1.621014e-51	-8.615850e-47
Msa0197030	Msa0742160	0.815208	1.040109e-51	-8.615850e-47
Msa0316610	Msa0742160	0.809998	1.434393e-50	-8.615850e-47
Msa0525270	Msa0742160	0.814710	1.340969e-51	-8.615850e-47
Msa0525280	Msa0742160	0.818425	1.973618e-52	-8.615850e-47
Msa0548210	Msa0742160	0.822444	2.361327e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742160	MtrunA17_Chr5g0443651	95.808	334	14	0	1	334	1	334	0.0	652

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0742160	AT3G47860.1	69.841	315	86	5	25	334	43	353	2.18e-155	439

Find 68 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACAATTATGCTCTTGTTTC+TGG	0.024981	5_1:+61976799	Msa0742160:CDS
AAAACTTACCTTGCAGATTA+TGG	0.223001	5_1:+61977676	Msa0742160:CDS
TTACTAAATTCTTTGCATTA+AGG	0.241023	5_1:+61978059	Msa0742160:three_prime_UTR
TCAGTTCAAGATCAGGAAAT+TGG	0.260295	5_1:-61977807	None:intergenic
TTTGACCCTATCAGATATTC+AGG	0.279436	5_1:+61976265	Msa0742160:CDS
GAGTGCAATGACAGTCTTCT+TGG	0.317907	5_1:-61976336	None:intergenic
ATTTATCTCTCCAGCAAATC+AGG	0.333389	5_1:+61975217	Msa0742160:CDS
TTGTATTTCTCTATAAATTC+AGG	0.336114	5_1:-61977655	None:intergenic
CATCTTCCTGAATATCTGAT+AGG	0.337240	5_1:-61976271	None:intergenic
ATGGGTATATAACTGGCATT+AGG	0.339085	5_1:+61976626	Msa0742160:CDS
TCTGATAGGGTCAAAATTCT+TGG	0.339639	5_1:-61976257	None:intergenic
CATAGCTGCCAGTTTACTAT+TGG	0.341261	5_1:-61977749	None:intergenic
ACAATACAAACCTGATTTGC+TGG	0.354372	5_1:-61975227	None:intergenic
TTCACTTGATCTTTCAAGTA+AGG	0.357987	5_1:+61975151	Msa0742160:CDS
GTAGCTTAGGTGATGCTCTT+AGG	0.358042	5_1:-61974978	None:intergenic
ATGTCTTTCACAAGAAGATT+TGG	0.359868	5_1:+61976660	Msa0742160:CDS
AACACAATCATTAAAATTCA+AGG	0.367727	5_1:-61978020	None:intergenic
GTTAGTGCCTGTTGCATCCC+TGG	0.384685	5_1:-61977781	None:intergenic
TTCTCTATAAATTCAGGTCC+AGG	0.399668	5_1:-61977649	None:intergenic
TGGGTATATAACTGGCATTA+GGG	0.407261	5_1:+61976627	Msa0742160:CDS
AGGGTGTGTATACATTTGAT+AGG	0.419310	5_1:+61976554	Msa0742160:intron
AGTAATGTCCAATAGTAAAC+TGG	0.423649	5_1:+61977741	Msa0742160:CDS
TCACTGGACTCATTCTCAAA+TGG	0.439527	5_1:-61976196	None:intergenic
TGCTCTTGTTTCTGGAGCTA+AGG	0.441426	5_1:+61976807	Msa0742160:CDS
GAAGTACAGTGAAGTAGCTT+AGG	0.441656	5_1:-61974991	None:intergenic
GGCCCTGATGGGTATATAAC+TGG	0.444525	5_1:+61976619	Msa0742160:CDS
ATAAATTCAGGTCCAGGGTT+AGG	0.446321	5_1:-61977643	None:intergenic
AAAGTATCAACTTGGATAGC+TGG	0.451315	5_1:-61976583	None:intergenic
ATGCCAGTTATATACCCATC+AGG	0.453847	5_1:-61976622	None:intergenic
GGTGTATCTTTAATTTCGCT+TGG	0.461443	5_1:-61977706	None:intergenic
TCAGTAGCAATCACATCATA+AGG	0.465892	5_1:-61976772	None:intergenic
ATCACATCATAAGGCTCCTT+GGG	0.467344	5_1:-61976763	None:intergenic
CTATCAGATATTCAGGAAGA+TGG	0.471288	5_1:+61976272	Msa0742160:CDS
GTCCATGCCAGGGATGCAAC+AGG	0.473508	5_1:+61977774	Msa0742160:CDS
AATCACATCATAAGGCTCCT+TGG	0.473774	5_1:-61976764	None:intergenic
TTGGGAATGAACGGCAATGT+TGG	0.490083	5_1:-61976745	None:intergenic
GAGCCCTTCAGTTCAAGATC+AGG	0.499745	5_1:-61977814	None:intergenic
AACATTGCCGTTCATTCCCA+AGG	0.502752	5_1:+61976747	Msa0742160:CDS
GCAGCTATGATGTCCATGCC+AGG	0.511229	5_1:+61977763	Msa0742160:CDS
ATTTCCTGATCTTGAACTGA+AGG	0.514630	5_1:+61977810	Msa0742160:CDS
TCTCTATAAATTCAGGTCCA+GGG	0.519094	5_1:-61977648	None:intergenic
ATATAACTGGCATTAGGGGA+AGG	0.531773	5_1:+61976632	Msa0742160:CDS
ATCTTCCTGAATATCTGATA+GGG	0.534452	5_1:-61976270	None:intergenic
CTTATCCTCTCATTCATCAA+AGG	0.536489	5_1:+61975016	Msa0742160:CDS
GGGTGTGTATACATTTGATA+GGG	0.537787	5_1:+61976555	Msa0742160:intron
TGCTGGAGAGATAAATATCA+AGG	0.541440	5_1:-61975210	None:intergenic
GACATTACTTCACAATCTTG+AGG	0.543352	5_1:-61977727	None:intergenic
CTAAATTCTTTGCATTAAGG+AGG	0.548450	5_1:+61978062	Msa0742160:three_prime_UTR
TTTCACTGGCAATAGCAAGC+TGG	0.550592	5_1:-61976159	None:intergenic
TGCCTGTTGCATCCCTGGCA+TGG	0.552579	5_1:-61977776	None:intergenic
TATAACTGGCATTAGGGGAA+GGG	0.559959	5_1:+61976633	Msa0742160:CDS
TGTTACCTTTGATGAATGAG+AGG	0.569074	5_1:-61975021	None:intergenic
TTTCCTGATCTTGAACTGAA+GGG	0.583532	5_1:+61977811	Msa0742160:CDS
GTTTCAAATACACTTGTGAG+TGG	0.612175	5_1:-61977850	None:intergenic
TAAGGCTCCTTGGGAATGAA+CGG	0.612716	5_1:-61976754	None:intergenic
TGAGACACAACTTGAGACGC+AGG	0.613938	5_1:+61976690	Msa0742160:CDS
AGAAGACTGTCATTGCACTC+AGG	0.620753	5_1:+61976339	Msa0742160:CDS
GAGACGCAGGAGATGATCAA+AGG	0.621662	5_1:+61976703	Msa0742160:CDS
GATTATAGCCATAATCTGCA+AGG	0.627467	5_1:-61977684	None:intergenic
TACTCAAGGACACCTAACCC+TGG	0.635374	5_1:+61977631	Msa0742160:CDS
GAAAATCTTATGATGATGAG+AGG	0.636432	5_1:+61976226	Msa0742160:CDS
AAATTGAGAAAGCAAAGTCA+TGG	0.636574	5_1:+61974945	None:intergenic
TGCCAGTTATATACCCATCA+GGG	0.636591	5_1:-61976621	None:intergenic
GGGTATATAACTGGCATTAG+GGG	0.637286	5_1:+61976628	Msa0742160:CDS
CAGCTATGATGTCCATGCCA+GGG	0.657155	5_1:+61977764	Msa0742160:CDS
CAATATTACAGATATACTCA+AGG	0.664599	5_1:+61977617	Msa0742160:intron
TGAACGGCAATGTTGGAAAG+CGG	0.667583	5_1:-61976738	None:intergenic
GAAGTTGCTTCACTCAAACG+CGG	0.736177	5_1:+61976298	Msa0742160:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTCTTAAATTATTTATTAG+TGG	+	chr5_1:61977522-61977541	Msa0742160:intron	10.0%
!!	AAAAATATGAAATAGTAATG+TGG	-	chr5_1:61975284-61975303	None:intergenic	15.0%
!!!	TATACAGATTTTAATTATAG+TGG	+	chr5_1:61975314-61975333	Msa0742160:intron	15.0%
!!	TTGTAACTTTAATACATTTA+TGG	-	chr5_1:61975472-61975491	None:intergenic	15.0%
!!!	AATTTGCTTATAATTCATTT+CGG	-	chr5_1:61975734-61975753	None:intergenic	15.0%
!!!	AAATTTTACTTCATCTATTT+TGG	+	chr5_1:61975749-61975768	Msa0742160:intron	15.0%
!!!	AGGCAATAATTTTTTTTTAT+TGG	+	chr5_1:61975843-61975862	Msa0742160:intron	15.0%
!!!	TTCTTCTAAATTTTAATTGA+TGG	+	chr5_1:61977164-61977183	Msa0742160:intron	15.0%
!!	GTTACAACAATAATTGATAA+TGG	-	chr5_1:61975080-61975099	None:intergenic	20.0%
!!!	TTTTTTTTATTGGATTGCAT+AGG	+	chr5_1:61975853-61975872	Msa0742160:intron	20.0%
!!	AATAAATATAGTCTGTGTTT+AGG	+	chr5_1:61976376-61976395	Msa0742160:intron	20.0%
!!	AGTATATAAATGACATTTCA+GGG	+	chr5_1:61976535-61976554	Msa0742160:intron	20.0%
!!!	TAAATTTTAATTGATGGCAA+TGG	+	chr5_1:61977170-61977189	Msa0742160:intron	20.0%
!!	ATATCTGTAATATTGATCAA+GGG	-	chr5_1:61977612-61977631	None:intergenic	20.0%
!!	TATATCTGTAATATTGATCA+AGG	-	chr5_1:61977613-61977632	None:intergenic	20.0%
!!	TTGTATTTCTCTATAAATTC+AGG	-	chr5_1:61977658-61977677	None:intergenic	20.0%
!!	AACACAATCATTAAAATTCA+AGG	-	chr5_1:61978023-61978042	None:intergenic	20.0%
!!	TTACTAAATTCTTTGCATTA+AGG	+	chr5_1:61978059-61978078	Msa0742160:three_prime_UTR	20.0%
!	TATATGATTCCAAAATCACA+TGG	+	chr5_1:61975356-61975375	Msa0742160:intron	25.0%
!!!	TCTTATGCTTGTAGTTTTAT+GGG	-	chr5_1:61975564-61975583	None:intergenic	25.0%
!	AAATCCACAGAAAAACATAA+TGG	-	chr5_1:61975693-61975712	None:intergenic	25.0%
!	GTATTAGTTATGACTTATGA+AGG	+	chr5_1:61975813-61975832	Msa0742160:intron	25.0%
!	TGACTTATGAAGGTTAATTT+AGG	+	chr5_1:61975823-61975842	Msa0742160:intron	25.0%
!	TACACATGTTAAGAAAAAGT+AGG	-	chr5_1:61975892-61975911	None:intergenic	25.0%
!	GAACAATGTTAAGTTAACAA+GGG	-	chr5_1:61976418-61976437	None:intergenic	25.0%
!	TGAACAATGTTAAGTTAACA+AGG	-	chr5_1:61976419-61976438	None:intergenic	25.0%
!	CATATTAATATCAAGAAGCA+TGG	-	chr5_1:61976515-61976534	None:intergenic	25.0%
!	GAGTATATAAATGACATTTC+AGG	+	chr5_1:61976534-61976553	Msa0742160:intron	25.0%
!!!	TTGATACTTTTTGTGTTCAT+GGG	+	chr5_1:61976596-61976615	Msa0742160:CDS	25.0%
!	AATAAGCTGAAAACAGATTA+TGG	-	chr5_1:61976972-61976991	None:intergenic	25.0%
!!	AATCATGTCTTGATAATTTG+TGG	+	chr5_1:61977322-61977341	Msa0742160:intron	25.0%
!	AACTAGTATATGTGTTAACT+TGG	-	chr5_1:61977393-61977412	None:intergenic	25.0%
!	TAATTGAATGTAATATGCGT+TGG	-	chr5_1:61977495-61977514	None:intergenic	25.0%
!	AATATTATGAATTACGACAC+CGG	-	chr5_1:61977570-61977589	None:intergenic	25.0%
!	CAATATTACAGATATACTCA+AGG	+	chr5_1:61977617-61977636	Msa0742160:intron	25.0%
!!!	TTTTGTTTCTAGACAATGCA+GGG	+	chr5_1:61975100-61975119	Msa0742160:intron	30.0%
!	TTCACTTGATCTTTCAAGTA+AGG	+	chr5_1:61975151-61975170	Msa0742160:CDS	30.0%
!	CTGACTAAACATGTTTTATC+TGG	+	chr5_1:61975176-61975195	Msa0742160:CDS	30.0%
!!	GTCTTATGCTTGTAGTTTTA+TGG	-	chr5_1:61975565-61975584	None:intergenic	30.0%
	TTGAAGTTTCGATACATTCA+AGG	+	chr5_1:61975601-61975620	Msa0742160:intron	30.0%
	TTGCTTATAATTCATTTCGG+AGG	-	chr5_1:61975731-61975750	None:intergenic	30.0%
	TTGCTTATATTTCAGTCTAG+AGG	+	chr5_1:61975925-61975944	Msa0742160:intron	30.0%
!	TCTAGAGGAAGTAGATATTT+TGG	+	chr5_1:61975940-61975959	Msa0742160:intron	30.0%
!	CTAGAGGAAGTAGATATTTT+GGG	+	chr5_1:61975941-61975960	Msa0742160:intron	30.0%
	CACTCTTTAATATGACCATA+TGG	+	chr5_1:61975970-61975989	Msa0742160:intron	30.0%
	CATTTGTAAGAACTTCCATA+TGG	-	chr5_1:61975988-61976007	None:intergenic	30.0%
!	GAAAATCTTATGATGATGAG+AGG	+	chr5_1:61976226-61976245	Msa0742160:CDS	30.0%
	ATCTTCCTGAATATCTGATA+GGG	-	chr5_1:61976273-61976292	None:intergenic	30.0%
	AGTTAACAAGGGAAATAAGT+TGG	-	chr5_1:61976407-61976426	None:intergenic	30.0%
	AAATAGATTCTATGCACATG+TGG	-	chr5_1:61976478-61976497	None:intergenic	30.0%
!!	GAACACAAAAAGTATCAACT+TGG	-	chr5_1:61976594-61976613	None:intergenic	30.0%
!!	GTTGATACTTTTTGTGTTCA+TGG	+	chr5_1:61976595-61976614	Msa0742160:CDS	30.0%
!!	TGATACTTTTTGTGTTCATG+GGG	+	chr5_1:61976597-61976616	Msa0742160:CDS	30.0%
	ATGTCTTTCACAAGAAGATT+TGG	+	chr5_1:61976660-61976679	Msa0742160:CDS	30.0%
	TTAATAGCTATGAGTTAGCA+AGG	+	chr5_1:61977266-61977285	Msa0742160:intron	30.0%
	TAATAGCTATGAGTTAGCAA+GGG	+	chr5_1:61977267-61977286	Msa0742160:intron	30.0%
	AAAACTTACCTTGCAGATTA+TGG	+	chr5_1:61977676-61977695	Msa0742160:CDS	30.0%
	AGTAATGTCCAATAGTAAAC+TGG	+	chr5_1:61977741-61977760	Msa0742160:CDS	30.0%
	CTAAATTCTTTGCATTAAGG+AGG	+	chr5_1:61978062-61978081	Msa0742160:three_prime_UTR	30.0%
	CTTATCCTCTCATTCATCAA+AGG	+	chr5_1:61975016-61975035	Msa0742160:CDS	35.0%
	TGTTACCTTTGATGAATGAG+AGG	-	chr5_1:61975024-61975043	None:intergenic	35.0%
!!!	CTTTTGTTTCTAGACAATGC+AGG	+	chr5_1:61975099-61975118	Msa0742160:intron	35.0%
!!	TTTGTTTCTAGACAATGCAG+GGG	+	chr5_1:61975101-61975120	Msa0742160:intron	35.0%
	TGCTGGAGAGATAAATATCA+AGG	-	chr5_1:61975213-61975232	None:intergenic	35.0%
	ATTTATCTCTCCAGCAAATC+AGG	+	chr5_1:61975217-61975236	Msa0742160:CDS	35.0%
!	ACAATACAAACCTGATTTGC+TGG	-	chr5_1:61975230-61975249	None:intergenic	35.0%
!	AGCTAATGTCCATGTGATTT+TGG	-	chr5_1:61975368-61975387	None:intergenic	35.0%
!!	GTGTAGTCTTTTTGTCGTTT+TGG	+	chr5_1:61975538-61975557	Msa0742160:intron	35.0%
	CTTATAATTCATTTCGGAGG+AGG	-	chr5_1:61975728-61975747	None:intergenic	35.0%
	ATGGAAGTTCTTACAAATGC+TGG	+	chr5_1:61975989-61976008	Msa0742160:intron	35.0%
!	CTACAGACTGTTGATGAAAA+AGG	-	chr5_1:61976105-61976124	None:intergenic	35.0%
!	TGAACTAACTGCATTTTCAC+TGG	-	chr5_1:61976176-61976195	None:intergenic	35.0%
!!	AAGATTTTCGCTGTTTTCAC+TGG	-	chr5_1:61976215-61976234	None:intergenic	35.0%
	TCTGATAGGGTCAAAATTCT+TGG	-	chr5_1:61976260-61976279	None:intergenic	35.0%
	TTTGACCCTATCAGATATTC+AGG	+	chr5_1:61976265-61976284	Msa0742160:CDS	35.0%
	CATCTTCCTGAATATCTGAT+AGG	-	chr5_1:61976274-61976293	None:intergenic	35.0%
	CTATCAGATATTCAGGAAGA+TGG	+	chr5_1:61976272-61976291	Msa0742160:CDS	35.0%
	TGTTCACAACTAACTGTTGA+AGG	+	chr5_1:61976433-61976452	Msa0742160:intron	35.0%
	GTTCACAACTAACTGTTGAA+GGG	+	chr5_1:61976434-61976453	Msa0742160:intron	35.0%
	TTCACAACTAACTGTTGAAG+GGG	+	chr5_1:61976435-61976454	Msa0742160:intron	35.0%
!	AATATCAAGAAGCATGGTCA+TGG	-	chr5_1:61976509-61976528	None:intergenic	35.0%
	AGGGTGTGTATACATTTGAT+AGG	+	chr5_1:61976554-61976573	Msa0742160:intron	35.0%
	GGGTGTGTATACATTTGATA+GGG	+	chr5_1:61976555-61976574	Msa0742160:intron	35.0%
!	AAAGTATCAACTTGGATAGC+TGG	-	chr5_1:61976586-61976605	None:intergenic	35.0%
!!	GATACTTTTTGTGTTCATGG+GGG	+	chr5_1:61976598-61976617	Msa0742160:CDS	35.0%
	ATGGGTATATAACTGGCATT+AGG	+	chr5_1:61976626-61976645	Msa0742160:CDS	35.0%
	TGGGTATATAACTGGCATTA+GGG	+	chr5_1:61976627-61976646	Msa0742160:CDS	35.0%
	TCAGTAGCAATCACATCATA+AGG	-	chr5_1:61976775-61976794	None:intergenic	35.0%
!	GACAATTATGCTCTTGTTTC+TGG	+	chr5_1:61976799-61976818	Msa0742160:CDS	35.0%
!!!	TAAGGACACAAGTTTTGTTC+AGG	+	chr5_1:61976825-61976844	Msa0742160:CDS	35.0%
!!	CTTATTTCTATAAGCTCTCC+AGG	+	chr5_1:61976986-61977005	Msa0742160:intron	35.0%
	CAAGTTTATCAACTCTTTCC+TGG	-	chr5_1:61977349-61977368	None:intergenic	35.0%
	TCTCTATAAATTCAGGTCCA+GGG	-	chr5_1:61977651-61977670	None:intergenic	35.0%
	TTCTCTATAAATTCAGGTCC+AGG	-	chr5_1:61977652-61977671	None:intergenic	35.0%
	GATTATAGCCATAATCTGCA+AGG	-	chr5_1:61977687-61977706	None:intergenic	35.0%
!	GGTGTATCTTTAATTTCGCT+TGG	-	chr5_1:61977709-61977728	None:intergenic	35.0%
	GACATTACTTCACAATCTTG+AGG	-	chr5_1:61977730-61977749	None:intergenic	35.0%
	TCAGTTCAAGATCAGGAAAT+TGG	-	chr5_1:61977810-61977829	None:intergenic	35.0%
	ATTTCCTGATCTTGAACTGA+AGG	+	chr5_1:61977810-61977829	Msa0742160:CDS	35.0%
	TTTCCTGATCTTGAACTGAA+GGG	+	chr5_1:61977811-61977830	Msa0742160:CDS	35.0%
	GTTTCAAATACACTTGTGAG+TGG	-	chr5_1:61977853-61977872	None:intergenic	35.0%
	GAAGTACAGTGAAGTAGCTT+AGG	-	chr5_1:61974994-61975013	None:intergenic	40.0%
	ATCACATGGACATTAGCTAG+AGG	+	chr5_1:61975370-61975389	Msa0742160:intron	40.0%
	CGAATGTGTCTTTCTCTAGT+CGG	+	chr5_1:61975501-61975520	Msa0742160:intron	40.0%
!	AGCGCCATTATGTTTTTCTG+TGG	+	chr5_1:61975686-61975705	Msa0742160:intron	40.0%
!	CAGACTGTTGATGAAAAAGG+TGG	-	chr5_1:61976102-61976121	None:intergenic	40.0%
	TCACTGGACTCATTCTCAAA+TGG	-	chr5_1:61976199-61976218	None:intergenic	40.0%
	TCACAACTAACTGTTGAAGG+GGG	+	chr5_1:61976436-61976455	Msa0742160:intron	40.0%
	TGCCAGTTATATACCCATCA+GGG	-	chr5_1:61976624-61976643	None:intergenic	40.0%
	ATGCCAGTTATATACCCATC+AGG	-	chr5_1:61976625-61976644	None:intergenic	40.0%
	GGGTATATAACTGGCATTAG+GGG	+	chr5_1:61976628-61976647	Msa0742160:CDS	40.0%
	ATATAACTGGCATTAGGGGA+AGG	+	chr5_1:61976632-61976651	Msa0742160:CDS	40.0%
	TATAACTGGCATTAGGGGAA+GGG	+	chr5_1:61976633-61976652	Msa0742160:CDS	40.0%
	ATCACATCATAAGGCTCCTT+GGG	-	chr5_1:61976766-61976785	None:intergenic	40.0%
	AATCACATCATAAGGCTCCT+TGG	-	chr5_1:61976767-61976786	None:intergenic	40.0%
!!	GTTGTTTTCATGAGCTATCC+TGG	-	chr5_1:61977007-61977026	None:intergenic	40.0%
!	GTCTTGATAATTTGTGGTCC+AGG	+	chr5_1:61977328-61977347	Msa0742160:intron	40.0%
	CGTTTGTAGCACCAATATAC+CGG	+	chr5_1:61977421-61977440	Msa0742160:intron	40.0%
!!	AATATGCGTTGGTGTCATGT+CGG	-	chr5_1:61977484-61977503	None:intergenic	40.0%
	ATAAATTCAGGTCCAGGGTT+AGG	-	chr5_1:61977646-61977665	None:intergenic	40.0%
	CATAGCTGCCAGTTTACTAT+TGG	-	chr5_1:61977752-61977771	None:intergenic	40.0%
	GTAGCTTAGGTGATGCTCTT+AGG	-	chr5_1:61974981-61975000	None:intergenic	45.0%
	TTTCACTGGCAATAGCAAGC+TGG	-	chr5_1:61976162-61976181	None:intergenic	45.0%
	GAAGTTGCTTCACTCAAACG+CGG	+	chr5_1:61976298-61976317	Msa0742160:CDS	45.0%
	GAGTGCAATGACAGTCTTCT+TGG	-	chr5_1:61976339-61976358	None:intergenic	45.0%
	AGAAGACTGTCATTGCACTC+AGG	+	chr5_1:61976339-61976358	Msa0742160:CDS	45.0%
	TGAACGGCAATGTTGGAAAG+CGG	-	chr5_1:61976741-61976760	None:intergenic	45.0%
	TTGGGAATGAACGGCAATGT+TGG	-	chr5_1:61976748-61976767	None:intergenic	45.0%
	AACATTGCCGTTCATTCCCA+AGG	+	chr5_1:61976747-61976766	Msa0742160:CDS	45.0%
	TAAGGCTCCTTGGGAATGAA+CGG	-	chr5_1:61976757-61976776	None:intergenic	45.0%
!!	TGCTCTTGTTTCTGGAGCTA+AGG	+	chr5_1:61976807-61976826	Msa0742160:CDS	45.0%
	GTAGCACCAATATACCGGAT+TGG	+	chr5_1:61977426-61977445	Msa0742160:intron	45.0%
	CTACTTGTCAGTGTCATGTC+CGG	+	chr5_1:61977548-61977567	Msa0742160:intron	45.0%
!	TCACTCAAACGCGGTTTTGC+TGG	+	chr5_1:61976307-61976326	Msa0742160:CDS	50.0%
	CAACTAACTGTTGAAGGGGG+AGG	+	chr5_1:61976439-61976458	Msa0742160:intron	50.0%
!	GGCCCTGATGGGTATATAAC+TGG	+	chr5_1:61976619-61976638	Msa0742160:CDS	50.0%
	TGAGACACAACTTGAGACGC+AGG	+	chr5_1:61976690-61976709	Msa0742160:CDS	50.0%
	GAGACGCAGGAGATGATCAA+AGG	+	chr5_1:61976703-61976722	Msa0742160:CDS	50.0%
!	GCACCAATATACCGGATTGG+TGG	+	chr5_1:61977429-61977448	Msa0742160:intron	50.0%
	ACGCCACCAATCCGGTATAT+TGG	-	chr5_1:61977435-61977454	None:intergenic	50.0%
	CACTGACATGTGTGAGACAC+CGG	-	chr5_1:61977460-61977479	None:intergenic	50.0%
	TACTCAAGGACACCTAACCC+TGG	+	chr5_1:61977631-61977650	Msa0742160:CDS	50.0%
	CAGCTATGATGTCCATGCCA+GGG	+	chr5_1:61977764-61977783	Msa0742160:CDS	50.0%
	GAGCCCTTCAGTTCAAGATC+AGG	-	chr5_1:61977817-61977836	None:intergenic	50.0%
!	AAACGCGGTTTTGCTGGAGC+AGG	+	chr5_1:61976313-61976332	Msa0742160:CDS	55.0%
	GACTGTCATTGCACTCAGGC+AGG	+	chr5_1:61976343-61976362	Msa0742160:intron	55.0%
	GCAGCTATGATGTCCATGCC+AGG	+	chr5_1:61977763-61977782	Msa0742160:CDS	55.0%
	GTTAGTGCCTGTTGCATCCC+TGG	-	chr5_1:61977784-61977803	None:intergenic	55.0%
	TGTGTTCATGGGGGCCCTGA+TGG	+	chr5_1:61976607-61976626	Msa0742160:CDS	60.0%
	GTGTTCATGGGGGCCCTGAT+GGG	+	chr5_1:61976608-61976627	Msa0742160:CDS	60.0%
!!	TACCGGATTGGTGGCGTGTC+CGG	+	chr5_1:61977438-61977457	Msa0742160:intron	60.0%
	GTCCATGCCAGGGATGCAAC+AGG	+	chr5_1:61977774-61977793	Msa0742160:CDS	60.0%
	TGCCTGTTGCATCCCTGGCA+TGG	-	chr5_1:61977779-61977798	None:intergenic	60.0%
	CACCGGACACGCCACCAATC+CGG	-	chr5_1:61977443-61977462	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	61974953	61978087	61974953	ID=Msa0742160;Name=Msa0742160
chr5_1	mRNA	61974953	61978087	61974953	ID=Msa0742160-mRNA-1;Parent=Msa0742160;Name=Msa0742160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=11\|1\|1\|1\|1\|1\|5\|181\|334
chr5_1	exon	61974953	61975037	61974953	ID=Msa0742160-mRNA-1:exon:18055;Parent=Msa0742160-mRNA-1
chr5_1	exon	61975121	61975238	61975121	ID=Msa0742160-mRNA-1:exon:18056;Parent=Msa0742160-mRNA-1
chr5_1	exon	61976118	61976360	61976118	ID=Msa0742160-mRNA-1:exon:18057;Parent=Msa0742160-mRNA-1
chr5_1	exon	61976556	61976846	61976556	ID=Msa0742160-mRNA-1:exon:18058;Parent=Msa0742160-mRNA-1
chr5_1	exon	61977628	61978087	61977628	ID=Msa0742160-mRNA-1:exon:18059;Parent=Msa0742160-mRNA-1
chr5_1	five_prime_UTR	61974953	61974963	61974953	ID=Msa0742160-mRNA-1:five_prime_utr;Parent=Msa0742160-mRNA-1
chr5_1	CDS	61974964	61975037	61974964	ID=Msa0742160-mRNA-1:cds;Parent=Msa0742160-mRNA-1
chr5_1	CDS	61975121	61975238	61975121	ID=Msa0742160-mRNA-1:cds;Parent=Msa0742160-mRNA-1
chr5_1	CDS	61976118	61976360	61976118	ID=Msa0742160-mRNA-1:cds;Parent=Msa0742160-mRNA-1
chr5_1	CDS	61976556	61976846	61976556	ID=Msa0742160-mRNA-1:cds;Parent=Msa0742160-mRNA-1
chr5_1	CDS	61977628	61977906	61977628	ID=Msa0742160-mRNA-1:cds;Parent=Msa0742160-mRNA-1
chr5_1	three_prime_UTR	61977907	61978087	61977907	ID=Msa0742160-mRNA-1:three_prime_utr;Parent=Msa0742160-mRNA-1

Gene Sequence

>Msa0742160

ATGGTAGATATTTTCCTAAGAGCATCACCTAAGCTACTTCACTGTACTTCTTCTTATCCTCTCATTCATCAAAGGGGAGTGTCAAGAAAAACACAGTTGAAGTGTTCACTTGATCTTTCAAGTAAGGTTCTGACTAAACATGTTTTATCTGGTCTTGCTGCTTCCTTGATATTTATCTCTCCAGCAAATCAGTCTGTAGCAGCAGATCTATATTCTCATCAACAAAACATATGCCAGCTTGCTATTGCCAGTGAAAATGCAGTTAGTTCACCATTTGAGAATGAGTCCAGTGAAAACAGCGAAAATCTTATGATGATGAGAGGTATGACAGCCAAGAATTTTGACCCTATCAGATATTCAGGAAGATGGTTTGAAGTTGCTTCACTCAAACGCGGTTTTGCTGGAGCAGGCCAAGAAGACTGTCATTGCACTCAGGGTGTGTATACATTTGATAGGGAAAAACCAGCTATCCAAGTTGATACTTTTTGTGTTCATGGGGGCCCTGATGGGTATATAACTGGCATTAGGGGAAGGGTTCAATGTCTTTCACAAGAAGATTTGGTGAAAAATGAGACACAACTTGAGACGCAGGAGATGATCAAAGGAAAATGCTTTCTCCGCTTTCCAACATTGCCGTTCATTCCCAAGGAGCCTTATGATGTGATTGCTACTGATTATGACAATTATGCTCTTGTTTCTGGAGCTAAGGACACAAGTTTTGTTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAATACAAAACTTACCTTGCAGATTATGGCTATAATCCAAGCGAAATTAAAGATACACCTCAAGATTGTGAAGTAATGTCCAATAGTAAACTGGCAGCTATGATGTCCATGCCAGGGATGCAACAGGCACTAACAAACCAATTTCCTGATCTTGAACTGAAGGGCTCTGTTGCATTTGATCCACTCACAAGTGTATTTGAAACTCTGAAGAAGCTTGTTGAGCTTTATTTTAAGTAG

Protein sequence

>Msa0742160

MVDIFLRASPKLLHCTSSYPLIHQRGVSRKTQLKCSLDLSSKVLTKHVLSGLAASLIFISPANQSVAADLYSHQQNICQLAIASENAVSSPFENESSENSENLMMMRGMTAKNFDPIRYSGRWFEVASLKRGFAGAGQEDCHCTQGVYTFDREKPAIQVDTFCVHGGPDGYITGIRGRVQCLSQEDLVKNETQLETQEMIKGKCFLRFPTLPFIPKEPYDVIATDYDNYALVSGAKDTSFVQIYSRTPNPGPEFIEKYKTYLADYGYNPSEIKDTPQDCEVMSNSKLAAMMSMPGMQQALTNQFPDLELKGSVAFDPLTSVFETLKKLVELYFK*