Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786980 | XP_003617362.1 | 95.960 | 594 | 24 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786980 | sp|E7BQV0|NPR1_MALHU | 58.333 | 552 | 220 | 5 | 18 | 567 | 18 | 561 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786980 | G7K396 | 95.960 | 594 | 24 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1126 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0786980 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0786980 | 0.805503 | 1.293434e-49 | -8.615850e-47 |
| Msa0092410 | Msa0786980 | 0.833316 | 5.720177e-56 | -8.615850e-47 |
| Msa0101240 | Msa0786980 | 0.813663 | 2.283933e-51 | -8.615850e-47 |
| Msa0614380 | Msa0786980 | 0.859793 | 3.233397e-63 | -8.615850e-47 |
| Msa0697590 | Msa0786980 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0708310 | Msa0786980 | 0.823721 | 1.189370e-53 | -8.615850e-47 |
| Msa0733010 | Msa0786980 | 0.822384 | 2.438441e-53 | -8.615850e-47 |
| Msa0750810 | Msa0786980 | 0.809432 | 1.898188e-50 | -8.615850e-47 |
| Msa0773990 | Msa0786980 | 0.813459 | 2.532108e-51 | -8.615850e-47 |
| Msa0786980 | Msa0794210 | 0.809147 | 2.184344e-50 | -8.615850e-47 |
| Msa0786980 | Msa0797770 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0786980 | Msa0822350 | 0.891062 | 5.595169e-74 | -8.615850e-47 |
| Msa0786980 | Msa0823540 | 0.800735 | 1.253932e-48 | -8.615850e-47 |
| Msa0786980 | Msa0828240 | 0.810017 | 1.420470e-50 | -8.615850e-47 |
| Msa0786980 | Msa0865970 | 0.805313 | 1.417779e-49 | -8.615850e-47 |
| Msa0786980 | Msa0866070 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
| Msa0786980 | Msa0927970 | 0.800564 | 1.358235e-48 | -8.615850e-47 |
| Msa0786980 | Msa0964490 | 0.812832 | 3.476864e-51 | -8.615850e-47 |
| Msa0786980 | Msa0965290 | 0.801919 | 7.174156e-49 | -8.615850e-47 |
| Msa0786980 | Msa0982780 | 0.808517 | 2.978847e-50 | -8.615850e-47 |
| Msa0786980 | Msa0992640 | 0.815773 | 7.784856e-52 | -8.615850e-47 |
| Msa0786980 | Msa0992680 | 0.815868 | 7.415583e-52 | -8.615850e-47 |
| Msa0786980 | Msa0999680 | 0.807478 | 4.957343e-50 | -8.615850e-47 |
| Msa0786980 | Msa1043120 | 0.860290 | 2.289723e-63 | -8.615850e-47 |
| Msa0786980 | Msa1084640 | 0.948093 | 1.867210e-106 | -8.615850e-47 |
| Msa0786980 | Msa1353890 | 0.820616 | 6.241830e-53 | -8.615850e-47 |
| Msa0786980 | Msa1360420 | 0.811481 | 6.852966e-51 | -8.615850e-47 |
| Msa0786980 | Msa1383680 | 0.800940 | 1.138622e-48 | -8.615850e-47 |
| Msa0786980 | Msa1400340 | 0.949722 | 7.143210e-108 | -8.615850e-47 |
| Msa0786980 | Msa1408180 | 0.812950 | 3.274677e-51 | -8.615850e-47 |
| Msa0786980 | Msa1416730 | 0.943877 | 5.431178e-103 | -8.615850e-47 |
| Msa0786980 | Msa1418280 | 0.803168 | 3.964389e-49 | -8.615850e-47 |
| Msa0786980 | Msa1424630 | 0.812551 | 4.004650e-51 | -8.615850e-47 |
| Msa0786980 | Msa1430550 | 0.856796 | 2.524862e-62 | -8.615850e-47 |
| Msa0786980 | Msa1448980 | 0.811346 | 7.332031e-51 | -8.615850e-47 |
| Msa0786980 | Msa1465210 | 0.806980 | 6.320857e-50 | -8.615850e-47 |
| Msa0187830 | Msa0786980 | 0.801032 | 1.090097e-48 | -8.615850e-47 |
| Msa0189610 | Msa0786980 | 0.802579 | 5.247263e-49 | -8.615850e-47 |
| Msa0215590 | Msa0786980 | 0.802908 | 4.488290e-49 | -8.615850e-47 |
| Msa0227340 | Msa0786980 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0371460 | Msa0786980 | 0.810524 | 1.104664e-50 | -8.615850e-47 |
| Msa0408340 | Msa0786980 | 0.859322 | 4.480047e-63 | -8.615850e-47 |
| Msa0419670 | Msa0786980 | 0.849253 | 3.640760e-60 | -8.615850e-47 |
| Msa0443020 | Msa0786980 | 0.854573 | 1.124746e-61 | -8.615850e-47 |
| Msa0450180 | Msa0786980 | 0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0463270 | Msa0786980 | 0.820522 | 6.562424e-53 | -8.615850e-47 |
| Msa0244880 | Msa0786980 | 0.837605 | 4.709203e-57 | -8.615850e-47 |
| Msa0244890 | Msa0786980 | 0.801405 | 9.145356e-49 | -8.615850e-47 |
| Msa0244900 | Msa0786980 | 0.811199 | 7.891022e-51 | -8.615850e-47 |
| Msa0264830 | Msa0786980 | 0.804211 | 2.408497e-49 | -8.615850e-47 |
| Msa0267790 | Msa0786980 | 0.800180 | 1.626137e-48 | -8.615850e-47 |
| Msa0269560 | Msa0786980 | 0.833191 | 6.144275e-56 | -8.615850e-47 |
| Msa0271550 | Msa0786980 | 0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0283470 | Msa0786980 | 0.848746 | 5.037440e-60 | -8.615850e-47 |
| Msa0283500 | Msa0786980 | 0.832685 | 8.209832e-56 | -8.615850e-47 |
| Msa0302870 | Msa0786980 | 0.808709 | 2.710854e-50 | -8.615850e-47 |
| Msa0305840 | Msa0786980 | 0.838475 | 2.813770e-57 | -8.615850e-47 |
| Msa0319290 | Msa0786980 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0331980 | Msa0786980 | 0.814376 | 1.590165e-51 | -8.615850e-47 |
| Msa0333650 | Msa0786980 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0340340 | Msa0786980 | 0.805646 | 1.207490e-49 | -8.615850e-47 |
| Msa0501410 | Msa0786980 | 0.831194 | 1.916801e-55 | -8.615850e-47 |
| Msa0506860 | Msa0786980 | 0.835788 | 1.368274e-56 | -8.615850e-47 |
| Msa0508880 | Msa0786980 | 0.823700 | 1.202802e-53 | -8.615850e-47 |
| Msa0511620 | Msa0786980 | 0.843438 | 1.401047e-58 | -8.615850e-47 |
| Msa0574600 | Msa0786980 | 0.812314 | 4.511288e-51 | -8.615850e-47 |
| Msa0580920 | Msa0786980 | 0.814981 | 1.168094e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786980 | MtrunA17_Chr5g0442661 | 95.960 | 594 | 24 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1126 |
| Msa0786980 | MtrunA17_Chr2g0291741 | 60.073 | 551 | 211 | 4 | 18 | 565 | 19 | 563 | 0.0 | 673 |
| Msa0786980 | MtrunA17_Chr2g0299621 | 39.367 | 569 | 313 | 11 | 10 | 565 | 6 | 555 | 8.11e-121 | 369 |
| Msa0786980 | MtrunA17_Chr1g0171771 | 32.300 | 387 | 227 | 9 | 54 | 408 | 2 | 385 | 2.50e-49 | 178 |
| Msa0786980 | MtrunA17_Chr7g0256321 | 32.877 | 365 | 221 | 9 | 66 | 408 | 24 | 386 | 3.81e-48 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786980 | AT5G45110.1 | 53.008 | 532 | 230 | 6 | 42 | 562 | 35 | 557 | 0.0 | 553 |
| Msa0786980 | AT4G19660.1 | 52.190 | 548 | 227 | 9 | 33 | 562 | 20 | 550 | 0.0 | 528 |
| Msa0786980 | AT4G19660.2 | 49.739 | 575 | 227 | 10 | 33 | 562 | 20 | 577 | 1.29e-176 | 513 |
| Msa0786980 | AT5G45110.2 | 52.128 | 470 | 209 | 5 | 42 | 504 | 35 | 495 | 9.74e-166 | 483 |
| Msa0786980 | AT1G64280.1 | 37.925 | 559 | 320 | 8 | 23 | 565 | 15 | 562 | 8.06e-115 | 354 |
| Msa0786980 | AT4G26120.2 | 37.372 | 586 | 338 | 12 | 16 | 590 | 16 | 583 | 7.87e-112 | 347 |
| Msa0786980 | AT4G26120.1 | 37.543 | 586 | 337 | 12 | 16 | 590 | 15 | 582 | 8.61e-112 | 347 |
| Msa0786980 | AT3G57130.1 | 32.300 | 387 | 241 | 9 | 40 | 408 | 1 | 384 | 1.62e-51 | 184 |
| Msa0786980 | AT2G41370.1 | 32.162 | 370 | 221 | 8 | 66 | 408 | 25 | 391 | 5.81e-48 | 175 |
| Msa0786980 | AT3G57130.2 | 31.737 | 167 | 101 | 4 | 40 | 197 | 1 | 163 | 2.48e-18 | 83.6 |
Find 131 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTCTTTCCTTTCT+TGG | 0.106064 | 5_2:-72603130 | Msa0786980:five_prime_UTR |
| CAAGGGATTGTAATCTTAAT+TGG | 0.155412 | 5_2:+72600001 | None:intergenic |
| TTTCTTGGTCATGGCTTCTT+TGG | 0.210120 | 5_2:-72603115 | Msa0786980:five_prime_UTR |
| AATTGTTTGACATGGTTTCT+AGG | 0.213691 | 5_2:+72599383 | None:intergenic |
| GAGCCTTGTCAACAAAATTT+AGG | 0.226635 | 5_2:+72601250 | None:intergenic |
| TAAAACCCCTTAAGCATTCT+TGG | 0.235008 | 5_2:-72603081 | Msa0786980:five_prime_UTR |
| TGACATGGACATCATATATT+TGG | 0.235777 | 5_2:-72601136 | Msa0786980:CDS |
| TTTGTATACTGGAAAGTTAA+AGG | 0.276961 | 5_2:-72602108 | Msa0786980:CDS |
| AAAGCAACATAGCATCTTAT+TGG | 0.277580 | 5_2:+72599493 | None:intergenic |
| TTCTTGCATTATTTGTATAC+TGG | 0.287135 | 5_2:-72602119 | Msa0786980:CDS |
| AGTAGTTGCTATATAAGTTT+TGG | 0.295240 | 5_2:-72599566 | Msa0786980:three_prime_UTR |
| GCAACTACTCTTGAACAAAA+TGG | 0.299646 | 5_2:+72599580 | None:intergenic |
| TCAACACATGTTGTCACTTC+TGG | 0.315551 | 5_2:+72602077 | None:intergenic |
| TCATGGCTTCTTTGGTTGAA+TGG | 0.319082 | 5_2:-72603107 | Msa0786980:five_prime_UTR |
| ATAACCATGTAATATAATTA+AGG | 0.321063 | 5_2:-72599416 | Msa0786980:three_prime_UTR |
| TGATGTGCAGCCATTAAAAT+TGG | 0.325931 | 5_2:+72601210 | None:intergenic |
| AGGAAAAGATGAAGAAGTTA+AGG | 0.328401 | 5_2:-72602219 | Msa0786980:CDS |
| ATGAAAGATTTGGTGCCTTA+TGG | 0.340611 | 5_2:-72602170 | Msa0786980:CDS |
| TTGTGCATATTGTGATTCTA+AGG | 0.357367 | 5_2:-72600890 | Msa0786980:CDS |
| CATTGCCACATGTTCATTGT+TGG | 0.365929 | 5_2:+72602415 | None:intergenic |
| TCTCTTTCCTTTCTTGGTCA+TGG | 0.367151 | 5_2:-72603124 | Msa0786980:five_prime_UTR |
| CGGTATTCATCGATGTATAT+TGG | 0.369661 | 5_2:-72602279 | Msa0786980:CDS |
| GCATCAGAAACCACTCTTGA+TGG | 0.370481 | 5_2:-72600733 | Msa0786980:CDS |
| AAATGATGAGAGAGATTGTT+TGG | 0.375136 | 5_2:+72603179 | None:intergenic |
| TGTACAAAGATAGAAATATA+TGG | 0.381572 | 5_2:+72603047 | None:intergenic |
| GTTCAAGAAGTTCTTACTCT+TGG | 0.391310 | 5_2:-72600865 | Msa0786980:CDS |
| AAAGGCTTCAATTGAGTCAA+TGG | 0.393031 | 5_2:+72602550 | None:intergenic |
| AACGAAGAAAGCACGGTTCA+TGG | 0.394343 | 5_2:-72599743 | Msa0786980:CDS |
| AGTCCATTGGGAGAAATTAC+AGG | 0.395594 | 5_2:+72599329 | None:intergenic |
| ATCTGCCCCAGCATTCTCTA+TGG | 0.400544 | 5_2:+72600116 | None:intergenic |
| CGTCAGAGTCCAATGCCTTA+AGG | 0.406730 | 5_2:+72600986 | None:intergenic |
| TGCAAGTTCAACAGCTTTGA+AGG | 0.409850 | 5_2:-72600079 | Msa0786980:CDS |
| AAGGTATCTCATGAAAGATT+TGG | 0.411203 | 5_2:-72602180 | Msa0786980:CDS |
| GGTTCCACTTCCATTGCATC+TGG | 0.423349 | 5_2:+72601042 | None:intergenic |
| ATTGCATCTGGTGTTGATTC+CGG | 0.423636 | 5_2:+72601054 | None:intergenic |
| GAAGGCATTTCACAAGGATA+TGG | 0.425039 | 5_2:-72599701 | Msa0786980:CDS |
| GACTCAGTTACCAACATCAT+TGG | 0.426624 | 5_2:-72603202 | Msa0786980:five_prime_UTR |
| CTTCTTCCGTTCCCTTCTCT+AGG | 0.435165 | 5_2:+72599773 | None:intergenic |
| AAAGAAGCCATGACCAAGAA+AGG | 0.450044 | 5_2:+72603117 | None:intergenic |
| CATCTTCAATCTCAAATCAA+AGG | 0.462304 | 5_2:-72602932 | Msa0786980:five_prime_UTR |
| GTGTTGATTCCGGCAGAGAT+TGG | 0.467675 | 5_2:+72601064 | None:intergenic |
| ATCTTCAATCTCAAATCAAA+GGG | 0.468826 | 5_2:-72602931 | Msa0786980:five_prime_UTR |
| TTTGCACCAAGAATGCTTAA+GGG | 0.475059 | 5_2:+72603075 | None:intergenic |
| TGTTCTTTCCTGCTGAGGCA+AGG | 0.476184 | 5_2:-72600143 | Msa0786980:CDS |
| TGTATCCACGAGGATTCTTA+AGG | 0.478040 | 5_2:+72600827 | None:intergenic |
| ATGGCTACCCTTGCCTCAGC+AGG | 0.479921 | 5_2:+72600135 | None:intergenic |
| AGTTCCTTAATTATATTACA+TGG | 0.483900 | 5_2:+72599412 | None:intergenic |
| AGAAGTTCTTACTCTTGGAT+TGG | 0.484032 | 5_2:-72600860 | Msa0786980:CDS |
| AAATCTTTCATGAGATACCT+TGG | 0.484404 | 5_2:+72602182 | None:intergenic |
| CTCTTATCATTCACAGTCAC+AGG | 0.484685 | 5_2:+72601021 | None:intergenic |
| GTTCTTTCCTGCTGAGGCAA+GGG | 0.487551 | 5_2:-72600142 | Msa0786980:CDS |
| AAAGATGAAGAAGTTAAGGA+TGG | 0.488807 | 5_2:-72602215 | Msa0786980:CDS |
| CTGTGAATGATAAGAGTGTC+AGG | 0.490919 | 5_2:-72601014 | Msa0786980:CDS |
| ATGTTGGTAACTGAGTCTAA+TGG | 0.492568 | 5_2:+72603208 | None:intergenic |
| GAGTGTCAGGAAAATCCTTA+AGG | 0.494210 | 5_2:-72601001 | Msa0786980:CDS |
| CACATGTTCATTGTTGGTTG+AGG | 0.498708 | 5_2:+72602421 | None:intergenic |
| AGTTACAACACTACATCAAA+AGG | 0.500386 | 5_2:+72599543 | None:intergenic |
| CAGGAAAATCCTTAAGGCAT+TGG | 0.500644 | 5_2:-72600995 | Msa0786980:CDS |
| TGTTGGTAACTGAGTCTAAT+GGG | 0.503568 | 5_2:+72603209 | None:intergenic |
| GGGTAGCCATAGAGAATGCT+GGG | 0.504854 | 5_2:-72600122 | Msa0786980:CDS |
| CCTCCGAGTCCAATCTCTGC+CGG | 0.505391 | 5_2:-72601073 | Msa0786980:CDS |
| AAGCTCTTTCATCTGAAAAG+TGG | 0.506831 | 5_2:+72601986 | None:intergenic |
| TGAAGAAGTTAAGGATGGAA+AGG | 0.507059 | 5_2:-72602210 | Msa0786980:CDS |
| CTTTGATTTACTTGAGGACA+TGG | 0.509792 | 5_2:-72602531 | Msa0786980:exon |
| GAAGAAGTTAAGGATGGAAA+GGG | 0.513248 | 5_2:-72602209 | Msa0786980:CDS |
| AGGGTAGCCATAGAGAATGC+TGG | 0.515215 | 5_2:-72600123 | Msa0786980:CDS |
| TTTCAATAGTGCAACCAAGA+TGG | 0.516370 | 5_2:+72600768 | None:intergenic |
| TGCATTGTCTTCTACATCAT+CGG | 0.516416 | 5_2:-72599650 | Msa0786980:CDS |
| TACATCATCGGCAAGTCGTA+GGG | 0.521228 | 5_2:-72599638 | Msa0786980:CDS |
| ACGAAAGGATCCATCCATCT+TGG | 0.521666 | 5_2:-72600782 | Msa0786980:CDS |
| TCACGTTGCCGCAAGACGAA+AGG | 0.524031 | 5_2:-72600797 | Msa0786980:CDS |
| GAATGCAATGAGAGAGAAGC+TGG | 0.524808 | 5_2:+72601175 | None:intergenic |
| AAGTTCTATGTCAGTGAACA+TGG | 0.525587 | 5_2:-72600584 | Msa0786980:CDS |
| CTACATCATCGGCAAGTCGT+AGG | 0.526560 | 5_2:-72599639 | Msa0786980:CDS |
| AAATTGTGTACAGTTGAGAA+TGG | 0.529000 | 5_2:-72599868 | Msa0786980:intron |
| TGTGTACAGTTGAGAATGGT+AGG | 0.529889 | 5_2:-72599864 | Msa0786980:intron |
| GGATGGATCCTTTCGTCTTG+CGG | 0.530660 | 5_2:+72600789 | None:intergenic |
| CTGGATTACCTTGAAAATAG+AGG | 0.531111 | 5_2:-72600520 | Msa0786980:intron |
| TTGGTGCCTTATGGTAGTGT+TGG | 0.531830 | 5_2:-72602161 | Msa0786980:CDS |
| TAGGCTGTTCTTTCCTGCTG+AGG | 0.533770 | 5_2:-72600148 | Msa0786980:CDS |
| AACACCAGATGCAATGGAAG+TGG | 0.536591 | 5_2:-72601046 | Msa0786980:CDS |
| GGAAGGAGTCTCACAAGGAT+AGG | 0.544010 | 5_2:-72600642 | Msa0786980:CDS |
| TCCAACGCAAAATTGATAGC+AGG | 0.548049 | 5_2:+72602026 | None:intergenic |
| ATGTTGCAGTTGCATTTGCT+AGG | 0.553352 | 5_2:-72600167 | Msa0786980:intron |
| GAAAGTGAGACAATGAACTA+AGG | 0.555346 | 5_2:+72603145 | None:intergenic |
| CATGTCCTCAAGTAAATCAA+AGG | 0.555434 | 5_2:+72602532 | None:intergenic |
| CATCACTCAATAACTTCTCA+AGG | 0.556447 | 5_2:+72602351 | None:intergenic |
| CGGCAGAGATTGGACTCGGA+GGG | 0.559848 | 5_2:+72601074 | None:intergenic |
| ATATCTAGACGATGATATGC+CGG | 0.559903 | 5_2:-72599806 | Msa0786980:CDS |
| TCAGAGATTGACGAGGCGAA+AGG | 0.561716 | 5_2:-72600689 | Msa0786980:CDS |
| TCATATCCAACACTACCATA+AGG | 0.563466 | 5_2:+72602155 | None:intergenic |
| ATTCCGGCAGAGATTGGACT+CGG | 0.564498 | 5_2:+72601070 | None:intergenic |
| AGCAGAGAACGAAGAAAGCA+CGG | 0.564815 | 5_2:-72599750 | Msa0786980:CDS |
| AATAGTGCAACCAAGATGGA+TGG | 0.572602 | 5_2:+72600772 | None:intergenic |
| ATGGCTGAAAATAACCAAGC+AGG | 0.574550 | 5_2:-72599682 | Msa0786980:CDS |
| TTGAGATGATACAAAACTCA+AGG | 0.576016 | 5_2:+72602481 | None:intergenic |
| TGAAGCCTTTGATTTACTTG+AGG | 0.577448 | 5_2:-72602537 | Msa0786980:five_prime_UTR |
| GGAATCAACACCAGATGCAA+TGG | 0.582737 | 5_2:-72601052 | Msa0786980:CDS |
| TTGCACCAAGAATGCTTAAG+GGG | 0.583899 | 5_2:+72603076 | None:intergenic |
| TGATGATTTACACATGAGAC+TGG | 0.587404 | 5_2:-72600539 | Msa0786980:CDS |
| GATTCTTGTTGAAGAAATCC+CGG | 0.588668 | 5_2:-72602303 | Msa0786980:CDS |
| AGCAGTTTGTCCATCAAGAG+TGG | 0.589661 | 5_2:+72600723 | None:intergenic |
| ACTTAAAGATGAGGTGCAGA+AGG | 0.589892 | 5_2:-72599719 | Msa0786980:CDS |
| CAACAATGAACATGTGGCAA+TGG | 0.591956 | 5_2:-72602414 | Msa0786980:CDS |
| CATGTTGTCACTTCTGGTGG+TGG | 0.593704 | 5_2:+72602083 | None:intergenic |
| ATACATCGATGAATACCGAC+CGG | 0.594441 | 5_2:+72602284 | None:intergenic |
| GCAACTAAAATTGTTTGACA+TGG | 0.594533 | 5_2:+72599375 | None:intergenic |
| CAATTTGTCAGAGATTGACG+AGG | 0.597048 | 5_2:-72600696 | Msa0786980:CDS |
| GATTGTTTGGCCAATGATGT+TGG | 0.597492 | 5_2:+72603192 | None:intergenic |
| GCAAGTTCAACAGCTTTGAA+GGG | 0.599785 | 5_2:-72600078 | Msa0786980:CDS |
| TACATCGATGAATACCGACC+GGG | 0.606894 | 5_2:+72602285 | None:intergenic |
| ATTTCAGTCATAACTTCATG+AGG | 0.607057 | 5_2:+72601102 | None:intergenic |
| GAGAGTCGTAAGGTCTGACA+TGG | 0.616876 | 5_2:-72601151 | Msa0786980:CDS |
| CTCAACCAACAATGAACATG+TGG | 0.620410 | 5_2:-72602420 | Msa0786980:CDS |
| TAAGAATCCTCGTGGATACA+CGG | 0.628927 | 5_2:-72600824 | Msa0786980:CDS |
| ACAAGCATAGTGTAGTGCAT+AGG | 0.635531 | 5_2:+72600909 | None:intergenic |
| GTTCATGGAACTTAAAGATG+AGG | 0.636671 | 5_2:-72599728 | Msa0786980:CDS |
| AAAGTCTTAACCACAAAGTG+AGG | 0.653570 | 5_2:-72599615 | Msa0786980:CDS |
| CCGGCAGAGATTGGACTCGG+AGG | 0.654889 | 5_2:+72601073 | None:intergenic |
| GCAGGGGAAGGAGTCTCACA+AGG | 0.661433 | 5_2:-72600647 | Msa0786980:CDS |
| ATTGCATTCAGAGAGTCGTA+AGG | 0.666386 | 5_2:-72601161 | Msa0786980:CDS |
| CTTGTTGAAGAAATCCCGGT+CGG | 0.667356 | 5_2:-72602299 | Msa0786980:CDS |
| GGTGCAGAAGGCATTTCACA+AGG | 0.668394 | 5_2:-72599707 | Msa0786980:CDS |
| ATTCTCCTTAAGAATCCTCG+TGG | 0.687759 | 5_2:-72600832 | Msa0786980:CDS |
| GTGAGTTTGAATAAGCTCAG+TGG | 0.700757 | 5_2:-72602377 | Msa0786980:CDS |
| ACACATGTTGTCACTTCTGG+TGG | 0.703043 | 5_2:+72602080 | None:intergenic |
| GCTGTTGAACTTGCATAGCG+TGG | 0.711386 | 5_2:+72600087 | None:intergenic |
| GGTAGCCATAGAGAATGCTG+GGG | 0.739957 | 5_2:-72600121 | Msa0786980:CDS |
| TGAAGAACCGTGTATCCACG+AGG | 0.741022 | 5_2:+72600817 | None:intergenic |
| AGGATGGAAAGGGAAAGCCA+AGG | 0.758248 | 5_2:-72602199 | Msa0786980:CDS |
| TCAAGCACCTCAGAACAATG+CGG | 0.766562 | 5_2:+72599832 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATCTTGAATATATTTAA+TGG | - | chr5_2:72599720-72599739 | Msa0786980:CDS | 10.0% |
| !! | TAATCTTGAATATATTTAAT+GGG | - | chr5_2:72599721-72599740 | Msa0786980:CDS | 10.0% |
| !! | AAAATGAGCAATAAAAATAA+AGG | + | chr5_2:72600643-72600662 | None:intergenic | 15.0% |
| !!! | TTTTTATTTATACATTTTGC+AGG | - | chr5_2:72600951-72600970 | Msa0786980:CDS | 15.0% |
| !!! | TATTTCAAATTTTATTCACT+TGG | + | chr5_2:72601009-72601028 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATGAAAATATTT+TGG | + | chr5_2:72602312-72602331 | None:intergenic | 15.0% |
| !! | ATAACCATGTAATATAATTA+AGG | - | chr5_2:72603127-72603146 | Msa0786980:five_prime_UTR | 15.0% |
| !! | TGTACAAAGATAGAAATATA+TGG | + | chr5_2:72599499-72599518 | None:intergenic | 20.0% |
| !! | TAAAAGAAAAACTACATACA+TGG | + | chr5_2:72599641-72599660 | None:intergenic | 20.0% |
| !! | TAAATGAAATTTAATGACCT+TGG | + | chr5_2:72599672-72599691 | None:intergenic | 20.0% |
| !! | AGATTAAGAATGAAAAAGTT+TGG | + | chr5_2:72599707-72599726 | None:intergenic | 20.0% |
| !!! | AAGATTTTCTTATACCATTT+TGG | + | chr5_2:72599759-72599778 | None:intergenic | 20.0% |
| !!! | AAATCTTAGTTTTTGTTTCA+TGG | - | chr5_2:72599772-72599791 | Msa0786980:CDS | 20.0% |
| !!! | TTTCATGAACTTTTTAAGAA+AGG | - | chr5_2:72600304-72600323 | Msa0786980:intron | 20.0% |
| !! | AAAGGATTATCATGAAAAAA+CGG | - | chr5_2:72601872-72601891 | Msa0786980:intron | 20.0% |
| !!! | AATACTTAATGAATTGATTC+TGG | + | chr5_2:72602230-72602249 | None:intergenic | 20.0% |
| !!! | TTTCATGAAACTTTTGAATT+TGG | - | chr5_2:72602318-72602337 | Msa0786980:CDS | 20.0% |
| !! | AGTTCCTTAATTATATTACA+TGG | + | chr5_2:72603134-72603153 | None:intergenic | 20.0% |
| ! | ATCTTCAATCTCAAATCAAA+GGG | - | chr5_2:72599612-72599631 | Msa0786980:CDS | 25.0% |
| !! | TTTCTTTTAATCTCTTACCA+AGG | - | chr5_2:72599652-72599671 | Msa0786980:CDS | 25.0% |
| !! | ATATTTAATGGGTCATCAAA+TGG | - | chr5_2:72599732-72599751 | Msa0786980:CDS | 25.0% |
| ! | CTAGAAGAATTAGAATATGT+TGG | - | chr5_2:72599887-72599906 | Msa0786980:intron | 25.0% |
| !!! | GAATCTGATTTCTTGTTTTT+TGG | - | chr5_2:72599949-72599968 | Msa0786980:intron | 25.0% |
| ! | TTCTTGCATTATTTGTATAC+TGG | - | chr5_2:72600424-72600443 | Msa0786980:intron | 25.0% |
| ! | TTTGTATACTGGAAAGTTAA+AGG | - | chr5_2:72600435-72600454 | Msa0786980:intron | 25.0% |
| !!! | TATCTGTTTACTTTTGATCT+AGG | - | chr5_2:72600828-72600847 | Msa0786980:CDS | 25.0% |
| !!! | ATCTGTTTACTTTTGATCTA+GGG | - | chr5_2:72600829-72600848 | Msa0786980:CDS | 25.0% |
| !! | TTTATACATTTTGCAGGTTT+TGG | - | chr5_2:72600957-72600976 | Msa0786980:CDS | 25.0% |
| ! | CATCAAATTTATATGAAGGT+AGG | + | chr5_2:72601057-72601076 | None:intergenic | 25.0% |
| ! | AGCACATCAAATTTATATGA+AGG | + | chr5_2:72601061-72601080 | None:intergenic | 25.0% |
| ! | ATATAAATTTGATGTGCTGA+CGG | - | chr5_2:72601063-72601082 | Msa0786980:CDS | 25.0% |
| ! | ACATTAGCTCATTTCAAAAA+AGG | + | chr5_2:72601243-72601262 | None:intergenic | 25.0% |
| !! | AGATGTCATTCCAATTTTAA+TGG | - | chr5_2:72601323-72601342 | Msa0786980:intron | 25.0% |
| !!! | TTCATGAAAATATTTTGGTG+AGG | + | chr5_2:72602307-72602326 | None:intergenic | 25.0% |
| ! | TTGAATTTGGAAGCTTATTA+TGG | - | chr5_2:72602331-72602350 | Msa0786980:CDS | 25.0% |
| ! | ATCTTTATACGAACATCAAA+TGG | - | chr5_2:72602624-72602643 | Msa0786980:intron | 25.0% |
| ! | TCAACTGTACACAATTTAAT+TGG | + | chr5_2:72602672-72602691 | None:intergenic | 25.0% |
| !! | AGTAGTTGCTATATAAGTTT+TGG | - | chr5_2:72602977-72602996 | Msa0786980:five_prime_UTR | 25.0% |
| !!! | CAAACAATTTTAGTTGCAAA+TGG | - | chr5_2:72603174-72603193 | Msa0786980:five_prime_UTR | 25.0% |
| AAATGATGAGAGAGATTGTT+TGG | + | chr5_2:72599367-72599386 | None:intergenic | 30.0% | |
| ! | AATCTCTCTCATCATTTTGT+TGG | - | chr5_2:72599370-72599389 | Msa0786980:three_prime_UTR | 30.0% |
| ! | ATCTCTCTCATCATTTTGTT+GGG | - | chr5_2:72599371-72599390 | Msa0786980:three_prime_UTR | 30.0% |
| CATCTTCAATCTCAAATCAA+AGG | - | chr5_2:72599611-72599630 | Msa0786980:CDS | 30.0% | |
| !! | GTTTTTGTTTCATGGAATGA+TGG | - | chr5_2:72599780-72599799 | Msa0786980:CDS | 30.0% |
| TTGAGATGATACAAAACTCA+AGG | + | chr5_2:72600065-72600084 | None:intergenic | 30.0% | |
| AGGAAAAGATGAAGAAGTTA+AGG | - | chr5_2:72600324-72600343 | Msa0786980:intron | 30.0% | |
| AAAGATGAAGAAGTTAAGGA+TGG | - | chr5_2:72600328-72600347 | Msa0786980:intron | 30.0% | |
| AAATCTTTCATGAGATACCT+TGG | + | chr5_2:72600364-72600383 | None:intergenic | 30.0% | |
| ! | AAGGTATCTCATGAAAGATT+TGG | - | chr5_2:72600363-72600382 | Msa0786980:intron | 30.0% |
| GTACAAGAAAATGATGCTTA+AGG | + | chr5_2:72600615-72600634 | None:intergenic | 30.0% | |
| CCTTTCTATTATTCAAGCTT+AGG | + | chr5_2:72600721-72600740 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATAATAGAA+AGG | - | chr5_2:72600718-72600737 | Msa0786980:CDS | 30.0% | |
| CAAGATTTCATCACAGAATT+CGG | + | chr5_2:72600784-72600803 | None:intergenic | 30.0% | |
| !!! | AATGCTTTACGTAGTTTTGT+AGG | + | chr5_2:72600874-72600893 | None:intergenic | 30.0% |
| ! | TTCTTTTCCTTTGTGCTATA+TGG | - | chr5_2:72601186-72601205 | Msa0786980:CDS | 30.0% |
| ! | ATATCTTTTTACTGATGCAG+AGG | - | chr5_2:72601265-72601284 | Msa0786980:intron | 30.0% |
| ! | TCTCCTAAATTTTGTTGACA+AGG | - | chr5_2:72601290-72601309 | Msa0786980:intron | 30.0% |
| TGACATGGACATCATATATT+TGG | - | chr5_2:72601407-72601426 | Msa0786980:intron | 30.0% | |
| ATTTCAGTCATAACTTCATG+AGG | + | chr5_2:72601444-72601463 | None:intergenic | 30.0% | |
| ! | GTTACTGAATCTTCTTTTAG+AGG | - | chr5_2:72601587-72601606 | Msa0786980:intron | 30.0% |
| TTGTGCATATTGTGATTCTA+AGG | - | chr5_2:72601653-72601672 | Msa0786980:intron | 30.0% | |
| TTGGTTGCACTATTGAAAAA+CGG | - | chr5_2:72601780-72601799 | Msa0786980:intron | 30.0% | |
| !! | ACCTCTAGAATCAATTCTAA+AGG | + | chr5_2:72602086-72602105 | None:intergenic | 30.0% |
| !! | GTCACTTGCTATTATACTTT+AGG | - | chr5_2:72602258-72602277 | Msa0786980:CDS | 30.0% |
| ! | AGTTTTCTTGTTCTAACAGA+AGG | + | chr5_2:72602522-72602541 | None:intergenic | 30.0% |
| CAAGGGATTGTAATCTTAAT+TGG | + | chr5_2:72602545-72602564 | None:intergenic | 30.0% | |
| TTACAATCCCTTGTAAAAAC+AGG | - | chr5_2:72602552-72602571 | Msa0786980:five_prime_UTR | 30.0% | |
| !!! | GATCATACCTGTTTTTACAA+GGG | + | chr5_2:72602562-72602581 | None:intergenic | 30.0% |
| !!! | TGATCATACCTGTTTTTACA+AGG | + | chr5_2:72602563-72602582 | None:intergenic | 30.0% |
| ACTGTACACAATTTAATTGG+AGG | + | chr5_2:72602669-72602688 | None:intergenic | 30.0% | |
| AAATTGTGTACAGTTGAGAA+TGG | - | chr5_2:72602675-72602694 | Msa0786980:intron | 30.0% | |
| AGTTACAACACTACATCAAA+AGG | + | chr5_2:72603003-72603022 | None:intergenic | 30.0% | |
| AAAGCAACATAGCATCTTAT+TGG | + | chr5_2:72603053-72603072 | None:intergenic | 30.0% | |
| AATTGTTTGACATGGTTTCT+AGG | + | chr5_2:72603163-72603182 | None:intergenic | 30.0% | |
| GCAACTAAAATTGTTTGACA+TGG | + | chr5_2:72603171-72603190 | None:intergenic | 30.0% | |
| GAAAGTGAGACAATGAACTA+AGG | + | chr5_2:72599401-72599420 | None:intergenic | 35.0% | |
| TCACTTTCTCTTTCCTTTCT+TGG | - | chr5_2:72599413-72599432 | Msa0786980:three_prime_UTR | 35.0% | |
| TAAAACCCCTTAAGCATTCT+TGG | - | chr5_2:72599462-72599481 | Msa0786980:three_prime_UTR | 35.0% | |
| TTTGCACCAAGAATGCTTAA+GGG | + | chr5_2:72599471-72599490 | None:intergenic | 35.0% | |
| ! | TTTTGCACCAAGAATGCTTA+AGG | + | chr5_2:72599472-72599491 | None:intergenic | 35.0% |
| !!! | ACAAGCTTTGCTATTTTGAG+TGG | - | chr5_2:72599585-72599604 | Msa0786980:three_prime_UTR | 35.0% |
| AAAGGCTTCAATTGAGTCAA+TGG | + | chr5_2:72599996-72600015 | None:intergenic | 35.0% | |
| ! | TGAAGCCTTTGATTTACTTG+AGG | - | chr5_2:72600006-72600025 | Msa0786980:CDS | 35.0% |
| CATGTCCTCAAGTAAATCAA+AGG | + | chr5_2:72600014-72600033 | None:intergenic | 35.0% | |
| ! | CTTTGATTTACTTGAGGACA+TGG | - | chr5_2:72600012-72600031 | Msa0786980:CDS | 35.0% |
| CATCACTCAATAACTTCTCA+AGG | + | chr5_2:72600195-72600214 | None:intergenic | 35.0% | |
| GATTCTTGTTGAAGAAATCC+CGG | - | chr5_2:72600240-72600259 | Msa0786980:intron | 35.0% | |
| CGGTATTCATCGATGTATAT+TGG | - | chr5_2:72600264-72600283 | Msa0786980:intron | 35.0% | |
| TGAAGAAGTTAAGGATGGAA+AGG | - | chr5_2:72600333-72600352 | Msa0786980:intron | 35.0% | |
| GAAGAAGTTAAGGATGGAAA+GGG | - | chr5_2:72600334-72600353 | Msa0786980:intron | 35.0% | |
| !! | ATGAAAGATTTGGTGCCTTA+TGG | - | chr5_2:72600373-72600392 | Msa0786980:intron | 35.0% |
| TCATATCCAACACTACCATA+AGG | + | chr5_2:72600391-72600410 | None:intergenic | 35.0% | |
| AAGCTCTTTCATCTGAAAAG+TGG | + | chr5_2:72600560-72600579 | None:intergenic | 35.0% | |
| !!! | AGAGCTTGCTTTAGTTTTTC+AGG | - | chr5_2:72600573-72600592 | Msa0786980:CDS | 35.0% |
| AGAAGACATCTGAAAAGTTC+AGG | - | chr5_2:72600673-72600692 | Msa0786980:CDS | 35.0% | |
| GAAGACATCTGAAAAGTTCA+GGG | - | chr5_2:72600674-72600693 | Msa0786980:CDS | 35.0% | |
| ACTAATAAGCAACAGCAGAT+TGG | - | chr5_2:72600926-72600945 | Msa0786980:CDS | 35.0% | |
| ATTCACTTGGAACATAGATG+AGG | + | chr5_2:72600996-72601015 | None:intergenic | 35.0% | |
| CTTGATAAATACACCAACAC+AGG | + | chr5_2:72601134-72601153 | None:intergenic | 35.0% | |
| TCCTTTGTGCTATATGGAAT+AGG | - | chr5_2:72601192-72601211 | Msa0786980:CDS | 35.0% | |
| ! | GAGCCTTGTCAACAAAATTT+AGG | + | chr5_2:72601296-72601315 | None:intergenic | 35.0% |
| TGATGTGCAGCCATTAAAAT+TGG | + | chr5_2:72601336-72601355 | None:intergenic | 35.0% | |
| GTTCAAGAAGTTCTTACTCT+TGG | - | chr5_2:72601678-72601697 | Msa0786980:intron | 35.0% | |
| AGAAGTTCTTACTCTTGGAT+TGG | - | chr5_2:72601683-72601702 | Msa0786980:intron | 35.0% | |
| TTTCAATAGTGCAACCAAGA+TGG | + | chr5_2:72601778-72601797 | None:intergenic | 35.0% | |
| TTATCATGAAAAAACGGTGC+AGG | - | chr5_2:72601878-72601897 | Msa0786980:intron | 35.0% | |
| TATCATGAAAAAACGGTGCA+GGG | - | chr5_2:72601879-72601898 | Msa0786980:intron | 35.0% | |
| AAGTTCTATGTCAGTGAACA+TGG | - | chr5_2:72601959-72601978 | Msa0786980:intron | 35.0% | |
| TGATGATTTACACATGAGAC+TGG | - | chr5_2:72602004-72602023 | Msa0786980:CDS | 35.0% | |
| CTGGATTACCTTGAAAATAG+AGG | - | chr5_2:72602023-72602042 | Msa0786980:CDS | 35.0% | |
| ! | GACAAGTACCTCTATTTTCA+AGG | + | chr5_2:72602034-72602053 | None:intergenic | 35.0% |
| !! | GCCTTTAGAATTGATTCTAG+AGG | - | chr5_2:72602082-72602101 | Msa0786980:CDS | 35.0% |
| ATATCTAGACGATGATATGC+CGG | - | chr5_2:72602737-72602756 | Msa0786980:intron | 35.0% | |
| !! | TTCTCTAGGACAAAAACATC+CGG | + | chr5_2:72602759-72602778 | None:intergenic | 35.0% |
| !! | GATGTTTTTGTCCTAGAGAA+GGG | - | chr5_2:72602759-72602778 | Msa0786980:intron | 35.0% |
| GTTCATGGAACTTAAAGATG+AGG | - | chr5_2:72602815-72602834 | Msa0786980:intron | 35.0% | |
| TGCATTGTCTTCTACATCAT+CGG | - | chr5_2:72602893-72602912 | Msa0786980:intron | 35.0% | |
| AAAGTCTTAACCACAAAGTG+AGG | - | chr5_2:72602928-72602947 | Msa0786980:five_prime_UTR | 35.0% | |
| ! | TTCATTTTCTCCTCACTTTG+TGG | + | chr5_2:72602941-72602960 | None:intergenic | 35.0% |
| GCAACTACTCTTGAACAAAA+TGG | + | chr5_2:72602966-72602985 | None:intergenic | 35.0% | |
| GACTCAGTTACCAACATCAT+TGG | - | chr5_2:72599341-72599360 | Msa0786980:three_prime_UTR | 40.0% | |
| GATTGTTTGGCCAATGATGT+TGG | + | chr5_2:72599354-72599373 | None:intergenic | 40.0% | |
| TCTCTTTCCTTTCTTGGTCA+TGG | - | chr5_2:72599419-72599438 | Msa0786980:three_prime_UTR | 40.0% | |
| AAAGAAGCCATGACCAAGAA+AGG | + | chr5_2:72599429-72599448 | None:intergenic | 40.0% | |
| TTTCTTGGTCATGGCTTCTT+TGG | - | chr5_2:72599428-72599447 | Msa0786980:three_prime_UTR | 40.0% | |
| TCATGGCTTCTTTGGTTGAA+TGG | - | chr5_2:72599436-72599455 | Msa0786980:three_prime_UTR | 40.0% | |
| TTGCACCAAGAATGCTTAAG+GGG | + | chr5_2:72599470-72599489 | None:intergenic | 40.0% | |
| GGTCATCAAATGGACCAAAA+TGG | - | chr5_2:72599742-72599761 | Msa0786980:CDS | 40.0% | |
| GCTTGAAGTACAAGTGATTG+TGG | - | chr5_2:72599818-72599837 | Msa0786980:CDS | 40.0% | |
| ! | CATTGAGTTGTGTCCTTAGA+GGG | - | chr5_2:72599922-72599941 | Msa0786980:intron | 40.0% |
| ! | ATTGAGTTGTGTCCTTAGAG+GGG | - | chr5_2:72599923-72599942 | Msa0786980:intron | 40.0% |
| ATCAGATTCATACCCCTCTA+AGG | + | chr5_2:72599938-72599957 | None:intergenic | 40.0% | |
| ! | CACATGTTCATTGTTGGTTG+AGG | + | chr5_2:72600125-72600144 | None:intergenic | 40.0% |
| CTCAACCAACAATGAACATG+TGG | - | chr5_2:72600123-72600142 | Msa0786980:CDS | 40.0% | |
| CATTGCCACATGTTCATTGT+TGG | + | chr5_2:72600131-72600150 | None:intergenic | 40.0% | |
| CAACAATGAACATGTGGCAA+TGG | - | chr5_2:72600129-72600148 | Msa0786980:CDS | 40.0% | |
| GTGAGTTTGAATAAGCTCAG+TGG | - | chr5_2:72600166-72600185 | Msa0786980:intron | 40.0% | |
| ATACATCGATGAATACCGAC+CGG | + | chr5_2:72600262-72600281 | None:intergenic | 40.0% | |
| ! | TCAACACATGTTGTCACTTC+TGG | + | chr5_2:72600469-72600488 | None:intergenic | 40.0% |
| ! | TCCTGCTATCAATTTTGCGT+TGG | - | chr5_2:72600516-72600535 | Msa0786980:intron | 40.0% |
| ! | TCCAACGCAAAATTGATAGC+AGG | + | chr5_2:72600520-72600539 | None:intergenic | 40.0% |
| GGTAGGCAAACATGCTTATT+AGG | + | chr5_2:72601040-72601059 | None:intergenic | 40.0% | |
| CCAACACAGGAAAACAGATT+TGG | + | chr5_2:72601121-72601140 | None:intergenic | 40.0% | |
| ! | CCAAATCTGTTTTCCTGTGT+TGG | - | chr5_2:72601118-72601137 | Msa0786980:CDS | 40.0% |
| GCCTATTCCATATAGCACAA+AGG | + | chr5_2:72601196-72601215 | None:intergenic | 40.0% | |
| TTGTGCTATATGGAATAGGC+AGG | - | chr5_2:72601196-72601215 | Msa0786980:CDS | 40.0% | |
| ATTGCATTCAGAGAGTCGTA+AGG | - | chr5_2:72601382-72601401 | Msa0786980:intron | 40.0% | |
| !! | ATTGCATCTGGTGTTGATTC+CGG | + | chr5_2:72601492-72601511 | None:intergenic | 40.0% |
| CTCTTATCATTCACAGTCAC+AGG | + | chr5_2:72601525-72601544 | None:intergenic | 40.0% | |
| !! | CTGTGAATGATAAGAGTGTC+AGG | - | chr5_2:72601529-72601548 | Msa0786980:intron | 40.0% |
| GAGTGTCAGGAAAATCCTTA+AGG | - | chr5_2:72601542-72601561 | Msa0786980:intron | 40.0% | |
| CAGGAAAATCCTTAAGGCAT+TGG | - | chr5_2:72601548-72601567 | Msa0786980:intron | 40.0% | |
| ACAAGCATAGTGTAGTGCAT+AGG | + | chr5_2:72601637-72601656 | None:intergenic | 40.0% | |
| ATTCTCCTTAAGAATCCTCG+TGG | - | chr5_2:72601711-72601730 | Msa0786980:intron | 40.0% | |
| TGTATCCACGAGGATTCTTA+AGG | + | chr5_2:72601719-72601738 | None:intergenic | 40.0% | |
| TAAGAATCCTCGTGGATACA+CGG | - | chr5_2:72601719-72601738 | Msa0786980:intron | 40.0% | |
| AATAGTGCAACCAAGATGGA+TGG | + | chr5_2:72601774-72601793 | None:intergenic | 40.0% | |
| CAATTTGTCAGAGATTGACG+AGG | - | chr5_2:72601847-72601866 | Msa0786980:intron | 40.0% | |
| ATCATGAAAAAACGGTGCAG+GGG | - | chr5_2:72601880-72601899 | Msa0786980:intron | 40.0% | |
| TGAGGTTCTTATGTGTGGAT+TGG | + | chr5_2:72602289-72602308 | None:intergenic | 40.0% | |
| TTTGGTGAGGTTCTTATGTG+TGG | + | chr5_2:72602294-72602313 | None:intergenic | 40.0% | |
| ATGTTGCAGTTGCATTTGCT+AGG | - | chr5_2:72602376-72602395 | Msa0786980:CDS | 40.0% | |
| ! | TGCAAGTTCAACAGCTTTGA+AGG | - | chr5_2:72602464-72602483 | Msa0786980:CDS | 40.0% |
| !! | GCAAGTTCAACAGCTTTGAA+GGG | - | chr5_2:72602465-72602484 | Msa0786980:CDS | 40.0% |
| TGTGTACAGTTGAGAATGGT+AGG | - | chr5_2:72602679-72602698 | Msa0786980:intron | 40.0% | |
| !!! | CTTTTTTCCGCATTGTTCTG+AGG | - | chr5_2:72602704-72602723 | Msa0786980:intron | 40.0% |
| !! | GGATGTTTTTGTCCTAGAGA+AGG | - | chr5_2:72602758-72602777 | Msa0786980:intron | 40.0% |
| ! | TTTTGTCCTAGAGAAGGGAA+CGG | - | chr5_2:72602764-72602783 | Msa0786980:intron | 40.0% |
| ACTTAAAGATGAGGTGCAGA+AGG | - | chr5_2:72602824-72602843 | Msa0786980:intron | 40.0% | |
| !! | GAAGGCATTTCACAAGGATA+TGG | - | chr5_2:72602842-72602861 | Msa0786980:intron | 40.0% |
| ATGGCTGAAAATAACCAAGC+AGG | - | chr5_2:72602861-72602880 | Msa0786980:intron | 40.0% | |
| ATGCAGATGAAAAACCTGCT+TGG | + | chr5_2:72602878-72602897 | None:intergenic | 40.0% | |
| ! | GCATTGAGTTGTGTCCTTAG+AGG | - | chr5_2:72599921-72599940 | Msa0786980:intron | 45.0% |
| CTTGTTGAAGAAATCCCGGT+CGG | - | chr5_2:72600244-72600263 | Msa0786980:intron | 45.0% | |
| TACATCGATGAATACCGACC+GGG | + | chr5_2:72600261-72600280 | None:intergenic | 45.0% | |
| ! | TTGGTGCCTTATGGTAGTGT+TGG | - | chr5_2:72600382-72600401 | Msa0786980:intron | 45.0% |
| ! | ACACATGTTGTCACTTCTGG+TGG | + | chr5_2:72600466-72600485 | None:intergenic | 45.0% |
| ! | AGTCGAAGACCTAGGCATTT+TGG | - | chr5_2:72600758-72600777 | Msa0786980:CDS | 45.0% |
| AGAATTCGGCCAAAATGCCT+AGG | + | chr5_2:72600770-72600789 | None:intergenic | 45.0% | |
| GAATGCAATGAGAGAGAAGC+TGG | + | chr5_2:72601371-72601390 | None:intergenic | 45.0% | |
| GGAATCAACACCAGATGCAA+TGG | - | chr5_2:72601491-72601510 | Msa0786980:intron | 45.0% | |
| AACACCAGATGCAATGGAAG+TGG | - | chr5_2:72601497-72601516 | Msa0786980:intron | 45.0% | |
| ACGAAAGGATCCATCCATCT+TGG | - | chr5_2:72601761-72601780 | Msa0786980:intron | 45.0% | |
| GCATCAGAAACCACTCTTGA+TGG | - | chr5_2:72601810-72601829 | Msa0786980:intron | 45.0% | |
| AGCAGTTTGTCCATCAAGAG+TGG | + | chr5_2:72601823-72601842 | None:intergenic | 45.0% | |
| TCAAGCACCTCAGAACAATG+CGG | + | chr5_2:72602714-72602733 | None:intergenic | 45.0% | |
| AGCAGAGAACGAAGAAAGCA+CGG | - | chr5_2:72602793-72602812 | Msa0786980:intron | 45.0% | |
| ! | AACGAAGAAAGCACGGTTCA+TGG | - | chr5_2:72602800-72602819 | Msa0786980:intron | 45.0% |
| TACATCATCGGCAAGTCGTA+GGG | - | chr5_2:72602905-72602924 | Msa0786980:intron | 45.0% | |
| AGGATGGAAAGGGAAAGCCA+AGG | - | chr5_2:72600344-72600363 | Msa0786980:intron | 50.0% | |
| ! | CATGTTGTCACTTCTGGTGG+TGG | + | chr5_2:72600463-72600482 | None:intergenic | 50.0% |
| ATGCATGAGATGGTGACTGC+AGG | - | chr5_2:72601091-72601110 | Msa0786980:CDS | 50.0% | |
| GAGAGTCGTAAGGTCTGACA+TGG | - | chr5_2:72601392-72601411 | Msa0786980:intron | 50.0% | |
| ATTCCGGCAGAGATTGGACT+CGG | + | chr5_2:72601476-72601495 | None:intergenic | 50.0% | |
| !! | GTGTTGATTCCGGCAGAGAT+TGG | + | chr5_2:72601482-72601501 | None:intergenic | 50.0% |
| GGTTCCACTTCCATTGCATC+TGG | + | chr5_2:72601504-72601523 | None:intergenic | 50.0% | |
| CGTCAGAGTCCAATGCCTTA+AGG | + | chr5_2:72601560-72601579 | None:intergenic | 50.0% | |
| TGAAGAACCGTGTATCCACG+AGG | + | chr5_2:72601729-72601748 | None:intergenic | 50.0% | |
| GGATGGATCCTTTCGTCTTG+CGG | + | chr5_2:72601757-72601776 | None:intergenic | 50.0% | |
| TCAGAGATTGACGAGGCGAA+AGG | - | chr5_2:72601854-72601873 | Msa0786980:intron | 50.0% | |
| TGAAAAAACGGTGCAGGGGA+AGG | - | chr5_2:72601884-72601903 | Msa0786980:intron | 50.0% | |
| GGAAGGAGTCTCACAAGGAT+AGG | - | chr5_2:72601901-72601920 | Msa0786980:intron | 50.0% | |
| TAGGCTGTTCTTTCCTGCTG+AGG | - | chr5_2:72602395-72602414 | Msa0786980:CDS | 50.0% | |
| TGTTCTTTCCTGCTGAGGCA+AGG | - | chr5_2:72602400-72602419 | Msa0786980:CDS | 50.0% | |
| GTTCTTTCCTGCTGAGGCAA+GGG | - | chr5_2:72602401-72602420 | Msa0786980:CDS | 50.0% | |
| AGGGTAGCCATAGAGAATGC+TGG | - | chr5_2:72602420-72602439 | Msa0786980:CDS | 50.0% | |
| GGGTAGCCATAGAGAATGCT+GGG | - | chr5_2:72602421-72602440 | Msa0786980:CDS | 50.0% | |
| GGTAGCCATAGAGAATGCTG+GGG | - | chr5_2:72602422-72602441 | Msa0786980:CDS | 50.0% | |
| ATCTGCCCCAGCATTCTCTA+TGG | + | chr5_2:72602430-72602449 | None:intergenic | 50.0% | |
| GCTGTTGAACTTGCATAGCG+TGG | + | chr5_2:72602459-72602478 | None:intergenic | 50.0% | |
| CTTCTTCCGTTCCCTTCTCT+AGG | + | chr5_2:72602773-72602792 | None:intergenic | 50.0% | |
| !! | GGTGCAGAAGGCATTTCACA+AGG | - | chr5_2:72602836-72602855 | Msa0786980:intron | 50.0% |
| CTACATCATCGGCAAGTCGT+AGG | - | chr5_2:72602904-72602923 | Msa0786980:intron | 50.0% | |
| CTAGGTCTTCGACTGCAGAG+CGG | + | chr5_2:72600752-72600771 | None:intergenic | 55.0% | |
| GACGGCGTGAATGCATGAGA+TGG | - | chr5_2:72601081-72601100 | Msa0786980:CDS | 55.0% | |
| TCACGTTGCCGCAAGACGAA+AGG | - | chr5_2:72601746-72601765 | Msa0786980:intron | 55.0% | |
| CGCTCTGCAGTCGAAGACCT+AGG | - | chr5_2:72600750-72600769 | Msa0786980:CDS | 60.0% | |
| CGGCAGAGATTGGACTCGGA+GGG | + | chr5_2:72601472-72601491 | None:intergenic | 60.0% | |
| CCTCCGAGTCCAATCTCTGC+CGG | - | chr5_2:72601470-72601489 | Msa0786980:intron | 60.0% | |
| GCAGGGGAAGGAGTCTCACA+AGG | - | chr5_2:72601896-72601915 | Msa0786980:intron | 60.0% | |
| ATGGCTACCCTTGCCTCAGC+AGG | + | chr5_2:72602411-72602430 | None:intergenic | 60.0% | |
| CCGGCAGAGATTGGACTCGG+AGG | + | chr5_2:72601473-72601492 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 72599337 | 72603228 | 72599337 | ID=Msa0786980;Name=Msa0786980 |
| chr5_2 | mRNA | 72599337 | 72603228 | 72599337 | ID=Msa0786980-mRNA-1;Parent=Msa0786980;Name=Msa0786980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=358|1|1|1|0.75|0.6|5|269|594 |
| chr5_2 | exon | 72599337 | 72599877 | 72599337 | ID=Msa0786980-mRNA-1:exon:22080;Parent=Msa0786980-mRNA-1 |
| chr5_2 | exon | 72599992 | 72600180 | 72599992 | ID=Msa0786980-mRNA-1:exon:22079;Parent=Msa0786980-mRNA-1 |
| chr5_2 | exon | 72600521 | 72601280 | 72600521 | ID=Msa0786980-mRNA-1:exon:22078;Parent=Msa0786980-mRNA-1 |
| chr5_2 | exon | 72601971 | 72602587 | 72601971 | ID=Msa0786980-mRNA-1:exon:22077;Parent=Msa0786980-mRNA-1 |
| chr5_2 | exon | 72602924 | 72603228 | 72602924 | ID=Msa0786980-mRNA-1:exon:22076;Parent=Msa0786980-mRNA-1 |
| chr5_2 | five_prime_UTR | 72602924 | 72603228 | 72602924 | ID=Msa0786980-mRNA-1:five_prime_utr;Parent=Msa0786980-mRNA-1 |
| chr5_2 | five_prime_UTR | 72602535 | 72602587 | 72602535 | ID=Msa0786980-mRNA-1:five_prime_utr;Parent=Msa0786980-mRNA-1 |
| chr5_2 | CDS | 72601971 | 72602534 | 72601971 | ID=Msa0786980-mRNA-1:cds;Parent=Msa0786980-mRNA-1 |
| chr5_2 | CDS | 72600521 | 72601280 | 72600521 | ID=Msa0786980-mRNA-1:cds;Parent=Msa0786980-mRNA-1 |
| chr5_2 | CDS | 72599992 | 72600180 | 72599992 | ID=Msa0786980-mRNA-1:cds;Parent=Msa0786980-mRNA-1 |
| chr5_2 | CDS | 72599606 | 72599877 | 72599606 | ID=Msa0786980-mRNA-1:cds;Parent=Msa0786980-mRNA-1 |
| chr5_2 | three_prime_UTR | 72599337 | 72599605 | 72599337 | ID=Msa0786980-mRNA-1:three_prime_utr;Parent=Msa0786980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
