Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0244900 | XP_003595077.1 | 93.056 | 216 | 15 | 0 | 1 | 216 | 1 | 216 | 4.70e-145 | 415 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0244900 | sp|Q2HIV9|BH035_ARATH | 63.636 | 220 | 71 | 6 | 1 | 216 | 1 | 215 | 2.21e-81 | 246 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0244900 | G7IG90 | 93.056 | 216 | 15 | 0 | 1 | 216 | 1 | 216 | 2.24e-145 | 415 |
Gene ID | Type | Classification |
---|---|---|
Msa0244900 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017930 | Msa0244900 | 0.806829 | 6.801193e-50 | -8.615850e-47 |
Msa0036890 | Msa0244900 | 0.810522 | 1.105243e-50 | -8.615850e-47 |
Msa0051050 | Msa0244900 | 0.818626 | 1.777144e-52 | -8.615850e-47 |
Msa0084970 | Msa0244900 | 0.801093 | 1.059306e-48 | -8.615850e-47 |
Msa0101240 | Msa0244900 | 0.826376 | 2.806432e-54 | -8.615850e-47 |
Msa0156300 | Msa0244900 | 0.800113 | 1.678431e-48 | -8.615850e-47 |
Msa0189600 | Msa0244900 | 0.810043 | 1.402094e-50 | -8.615850e-47 |
Msa0204830 | Msa0244900 | 0.826463 | 2.676432e-54 | -8.615850e-47 |
Msa0211200 | Msa0244900 | 0.818333 | 2.070787e-52 | -8.615850e-47 |
Msa0225830 | Msa0244900 | 0.807985 | 3.867632e-50 | -8.615850e-47 |
Msa0244890 | Msa0244900 | 0.895059 | 1.373298e-75 | -8.615850e-47 |
Msa0244900 | Msa0271540 | 0.844129 | 9.153451e-59 | -8.615850e-47 |
Msa0244900 | Msa0283470 | 0.815627 | 8.391852e-52 | -8.615850e-47 |
Msa0244900 | Msa0283490 | 0.869792 | 2.373547e-66 | -8.615850e-47 |
Msa0244900 | Msa0283500 | 0.815737 | 7.932368e-52 | -8.615850e-47 |
Msa0244900 | Msa0300840 | 0.804026 | 2.631438e-49 | -8.615850e-47 |
Msa0244900 | Msa0319260 | 0.805463 | 1.319078e-49 | -8.615850e-47 |
Msa0244900 | Msa0319270 | 0.814542 | 1.460995e-51 | -8.615850e-47 |
Msa0244900 | Msa0328730 | 0.814233 | 1.710452e-51 | -8.615850e-47 |
Msa0244900 | Msa0331970 | 0.832771 | 7.817789e-56 | -8.615850e-47 |
Msa0244900 | Msa0408340 | 0.816874 | 4.416224e-52 | -8.615850e-47 |
Msa0244900 | Msa0427700 | 0.803856 | 2.854529e-49 | -8.615850e-47 |
Msa0244900 | Msa0443020 | 0.804853 | 1.769413e-49 | -8.615850e-47 |
Msa0244900 | Msa0567380 | 0.832912 | 7.210610e-56 | -8.615850e-47 |
Msa0244900 | Msa0568800 | 0.818304 | 2.101500e-52 | -8.615850e-47 |
Msa0244900 | Msa0614380 | 0.866422 | 2.884616e-65 | -8.615850e-47 |
Msa0244900 | Msa0659120 | 0.807103 | 5.953389e-50 | -8.615850e-47 |
Msa0244900 | Msa0697590 | 0.829485 | 5.013463e-55 | -8.615850e-47 |
Msa0244900 | Msa0708310 | 0.801118 | 1.046967e-48 | -8.615850e-47 |
Msa0244900 | Msa0734250 | 0.810510 | 1.112350e-50 | -8.615850e-47 |
Msa0244900 | Msa0779510 | 0.807341 | 5.298479e-50 | -8.615850e-47 |
Msa0244900 | Msa0786980 | 0.811199 | 7.891022e-51 | -8.615850e-47 |
Msa0244900 | Msa0865970 | 0.800728 | 1.257799e-48 | -8.615850e-47 |
Msa0244900 | Msa0866070 | 0.803196 | 3.912642e-49 | -8.615850e-47 |
Msa0244900 | Msa0899970 | 0.803111 | 4.073869e-49 | -8.615850e-47 |
Msa0244900 | Msa0965290 | 0.802143 | 6.453003e-49 | -8.615850e-47 |
Msa0244900 | Msa0999680 | 0.807901 | 4.030342e-50 | -8.615850e-47 |
Msa0244900 | Msa1043120 | 0.813381 | 2.634507e-51 | -8.615850e-47 |
Msa0244900 | Msa1074890 | 0.824747 | 6.827589e-54 | -8.615850e-47 |
Msa0244900 | Msa1084640 | 0.814788 | 1.288831e-51 | -8.615850e-47 |
Msa0244900 | Msa1115740 | 0.837383 | 5.370788e-57 | -8.615850e-47 |
Msa0244900 | Msa1156950 | 0.811675 | 6.218148e-51 | -8.615850e-47 |
Msa0244900 | Msa1184890 | 0.809187 | 2.142126e-50 | -8.615850e-47 |
Msa0244900 | Msa1266490 | 0.811179 | 7.968900e-51 | -8.615850e-47 |
Msa0244900 | Msa1341840 | 0.804957 | 1.683207e-49 | -8.615850e-47 |
Msa0244900 | Msa1353890 | 0.810218 | 1.285903e-50 | -8.615850e-47 |
Msa0244900 | Msa1360420 | 0.828024 | 1.131186e-54 | -8.615850e-47 |
Msa0244900 | Msa1382300 | 0.800776 | 1.229640e-48 | -8.615850e-47 |
Msa0244900 | Msa1400340 | 0.812795 | 3.542355e-51 | -8.615850e-47 |
Msa0244900 | Msa1407750 | 0.806671 | 7.346552e-50 | -8.615850e-47 |
Msa0244900 | Msa1409490 | 0.827998 | 1.147447e-54 | -8.615850e-47 |
Msa0244900 | Msa1416730 | 0.808065 | 3.719041e-50 | -8.615850e-47 |
Msa0244900 | Msa1420920 | 0.802832 | 4.653231e-49 | -8.615850e-47 |
Msa0244900 | Msa1439650 | 0.876638 | 1.190664e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0244900 | MtrunA17_Chr2g0298751 | 93.056 | 216 | 15 | 0 | 1 | 216 | 1 | 216 | 4.32e-149 | 415 |
Msa0244900 | MtrunA17_Chr1g0211081 | 32.911 | 237 | 128 | 7 | 6 | 213 | 258 | 492 | 1.14e-21 | 93.2 |
Msa0244900 | MtrunA17_Chr8g0365711 | 30.539 | 167 | 108 | 2 | 51 | 217 | 243 | 401 | 1.96e-21 | 92.0 |
Msa0244900 | MtrunA17_Chr3g0131691 | 32.927 | 164 | 97 | 4 | 48 | 206 | 294 | 449 | 1.18e-17 | 81.6 |
Msa0244900 | MtrunA17_Chr4g0028071 | 30.769 | 169 | 100 | 3 | 51 | 216 | 148 | 302 | 3.27e-16 | 76.6 |
Msa0244900 | MtrunA17_Chr2g0320291 | 28.235 | 170 | 101 | 3 | 51 | 217 | 132 | 283 | 1.53e-15 | 74.3 |
Msa0244900 | MtrunA17_Chr7g0252041 | 34.756 | 164 | 94 | 6 | 49 | 206 | 283 | 439 | 5.33e-15 | 73.6 |
Msa0244900 | MtrunA17_Chr7g0275821 | 60.000 | 55 | 22 | 0 | 53 | 107 | 253 | 307 | 7.30e-15 | 73.2 |
Msa0244900 | MtrunA17_Chr5g0411341 | 27.439 | 164 | 117 | 2 | 53 | 216 | 494 | 655 | 1.26e-14 | 72.8 |
Msa0244900 | MtrunA17_Chr8g0366751 | 29.487 | 156 | 96 | 3 | 53 | 202 | 463 | 610 | 4.17e-14 | 71.2 |
Msa0244900 | MtrunA17_Chr7g0260841 | 42.308 | 104 | 46 | 4 | 53 | 156 | 356 | 445 | 5.60e-14 | 70.9 |
Msa0244900 | MtrunA17_Chr8g0346161 | 28.049 | 164 | 106 | 4 | 53 | 216 | 292 | 443 | 5.37e-13 | 67.8 |
Msa0244900 | MtrunA17_Chr4g0048851 | 29.341 | 167 | 98 | 3 | 50 | 215 | 45 | 192 | 9.09e-13 | 65.5 |
Msa0244900 | MtrunA17_Chr8g0346151 | 60.000 | 45 | 18 | 0 | 53 | 97 | 280 | 324 | 1.28e-12 | 66.6 |
Msa0244900 | MtrunA17_Chr5g0400661 | 26.667 | 195 | 114 | 7 | 37 | 220 | 136 | 312 | 3.77e-12 | 65.1 |
Msa0244900 | MtrunA17_Chr4g0049331 | 29.448 | 163 | 100 | 4 | 53 | 214 | 136 | 284 | 4.66e-12 | 64.3 |
Msa0244900 | MtrunA17_Chr2g0333611 | 23.415 | 205 | 125 | 4 | 27 | 214 | 3 | 192 | 4.89e-12 | 63.5 |
Msa0244900 | MtrunA17_Chr2g0280161 | 27.647 | 170 | 109 | 3 | 53 | 221 | 178 | 334 | 1.87e-11 | 63.2 |
Msa0244900 | MtrunA17_Chr5g0411541 | 34.118 | 170 | 90 | 4 | 48 | 217 | 152 | 299 | 3.83e-11 | 62.0 |
Msa0244900 | MtrunA17_Chr8g0336681 | 26.590 | 173 | 113 | 4 | 46 | 214 | 150 | 312 | 3.87e-11 | 62.0 |
Msa0244900 | MtrunA17_Chr3g0141091 | 55.882 | 68 | 29 | 1 | 48 | 115 | 169 | 235 | 4.59e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0244900 | AT5G57150.5 | 63.877 | 227 | 73 | 7 | 1 | 224 | 1 | 221 | 2.41e-84 | 251 |
Msa0244900 | AT5G57150.2 | 63.229 | 223 | 73 | 6 | 1 | 219 | 1 | 218 | 1.28e-83 | 249 |
Msa0244900 | AT5G57150.1 | 64.840 | 219 | 69 | 6 | 1 | 216 | 1 | 214 | 1.40e-83 | 249 |
Msa0244900 | AT5G57150.3 | 63.636 | 220 | 71 | 6 | 1 | 216 | 1 | 215 | 3.77e-83 | 248 |
Msa0244900 | AT5G57150.4 | 57.258 | 248 | 93 | 7 | 1 | 240 | 1 | 243 | 1.05e-81 | 245 |
Msa0244900 | AT4G29930.3 | 54.585 | 229 | 90 | 3 | 1 | 217 | 1 | 227 | 6.61e-80 | 241 |
Msa0244900 | AT4G29930.7 | 54.585 | 229 | 90 | 3 | 1 | 217 | 1 | 227 | 6.61e-80 | 241 |
Msa0244900 | AT4G29930.1 | 53.947 | 228 | 91 | 3 | 1 | 216 | 1 | 226 | 9.82e-79 | 238 |
Msa0244900 | AT4G29930.5 | 54.338 | 219 | 77 | 3 | 1 | 217 | 1 | 198 | 4.03e-76 | 230 |
Msa0244900 | AT4G29930.6 | 53.670 | 218 | 81 | 2 | 1 | 216 | 1 | 200 | 1.21e-75 | 229 |
Msa0244900 | AT4G29930.2 | 53.670 | 218 | 78 | 3 | 1 | 216 | 1 | 197 | 5.71e-75 | 227 |
Msa0244900 | AT4G29930.4 | 53.714 | 175 | 67 | 3 | 1 | 163 | 1 | 173 | 1.44e-53 | 171 |
Msa0244900 | AT3G26744.6 | 35.227 | 176 | 103 | 5 | 49 | 220 | 304 | 472 | 5.33e-18 | 82.8 |
Msa0244900 | AT2G28160.2 | 31.646 | 158 | 92 | 4 | 51 | 205 | 130 | 274 | 6.25e-17 | 78.6 |
Msa0244900 | AT2G28160.1 | 31.646 | 158 | 92 | 4 | 51 | 205 | 130 | 274 | 6.49e-17 | 79.0 |
Msa0244900 | AT2G16910.1 | 30.488 | 164 | 103 | 2 | 51 | 204 | 313 | 475 | 1.57e-16 | 78.6 |
Msa0244900 | AT1G12860.2 | 32.353 | 170 | 104 | 3 | 49 | 216 | 264 | 424 | 1.58e-16 | 78.6 |
Msa0244900 | AT3G26744.1 | 35.185 | 162 | 94 | 5 | 49 | 206 | 304 | 458 | 1.78e-16 | 78.6 |
Msa0244900 | AT3G26744.4 | 35.185 | 162 | 94 | 5 | 49 | 206 | 304 | 458 | 1.78e-16 | 78.6 |
Msa0244900 | AT3G26744.2 | 35.185 | 162 | 94 | 5 | 49 | 206 | 304 | 458 | 1.78e-16 | 78.6 |
Msa0244900 | AT1G12860.1 | 32.500 | 160 | 97 | 3 | 49 | 206 | 264 | 414 | 5.71e-16 | 77.0 |
Msa0244900 | AT1G01260.1 | 29.167 | 192 | 101 | 4 | 24 | 215 | 405 | 561 | 5.88e-16 | 77.0 |
Msa0244900 | AT1G01260.2 | 29.167 | 192 | 101 | 4 | 24 | 215 | 405 | 561 | 5.88e-16 | 77.0 |
Msa0244900 | AT1G01260.3 | 29.167 | 192 | 101 | 4 | 24 | 215 | 405 | 561 | 5.88e-16 | 77.0 |
Msa0244900 | AT2G46510.1 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 1.56e-15 | 75.9 |
Msa0244900 | AT5G46760.1 | 30.168 | 179 | 110 | 6 | 53 | 228 | 416 | 582 | 1.99e-15 | 75.5 |
Msa0244900 | AT1G32640.1 | 28.916 | 166 | 106 | 3 | 53 | 218 | 453 | 606 | 4.96e-15 | 74.3 |
Msa0244900 | AT4G17880.1 | 31.677 | 161 | 73 | 5 | 54 | 202 | 418 | 553 | 6.83e-15 | 73.9 |
Msa0244900 | AT4G16430.1 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 2.81e-14 | 72.0 |
Msa0244900 | AT4G21330.1 | 30.178 | 169 | 108 | 4 | 51 | 219 | 31 | 189 | 1.48e-12 | 65.1 |
Msa0244900 | AT5G46830.1 | 26.220 | 164 | 106 | 2 | 53 | 216 | 344 | 492 | 1.54e-12 | 67.0 |
Msa0244900 | AT1G63650.3 | 30.061 | 163 | 107 | 3 | 56 | 212 | 409 | 570 | 3.28e-12 | 65.9 |
Msa0244900 | AT1G63650.1 | 30.061 | 163 | 107 | 3 | 56 | 212 | 409 | 570 | 3.28e-12 | 65.9 |
Msa0244900 | AT1G63650.2 | 30.061 | 163 | 107 | 3 | 56 | 212 | 409 | 570 | 3.28e-12 | 65.9 |
Msa0244900 | AT4G37850.2 | 29.268 | 164 | 97 | 5 | 53 | 212 | 153 | 301 | 2.15e-11 | 63.2 |
Msa0244900 | AT4G37850.1 | 29.268 | 164 | 97 | 5 | 53 | 212 | 153 | 301 | 2.15e-11 | 63.2 |
Msa0244900 | AT4G00870.1 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 3.33e-11 | 62.8 |
Msa0244900 | AT1G10610.1 | 31.210 | 157 | 89 | 4 | 51 | 202 | 263 | 405 | 4.83e-11 | 62.4 |
Msa0244900 | AT1G10610.3 | 30.818 | 159 | 91 | 4 | 51 | 204 | 166 | 310 | 5.68e-11 | 62.0 |
Msa0244900 | AT1G10610.2 | 31.210 | 157 | 89 | 4 | 51 | 202 | 233 | 375 | 5.90e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAGGTGGTTGGTTTATT+TGG | 0.165944 | 2_2:+23719517 | None:intergenic |
CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2_2:+23718312 | None:intergenic |
TGATGATTGAAAGAAGTTTA+AGG | 0.235606 | 2_2:+23719501 | None:intergenic |
GGATAAAGCTTCAATTATTA+AGG | 0.255192 | 2_2:-23718473 | Msa0244900:CDS |
AGAAAGTGAAATGAAATTAA+AGG | 0.266647 | 2_2:+23717012 | None:intergenic |
AAGAGGAGGAAGAAGCTTAA+TGG | 0.285606 | 2_2:-23719146 | Msa0244900:CDS |
ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2_2:+23719375 | None:intergenic |
ATGGTTGTTAAAGTTGAAAT+TGG | 0.301895 | 2_2:+23719449 | None:intergenic |
GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2_2:-23719415 | Msa0244900:CDS |
TCCTATTTAATTTGCTTTGT+AGG | 0.319572 | 2_2:-23716934 | Msa0244900:three_prime_UTR |
CCTGATGATGCTGCACCATC+TGG | 0.327488 | 2_2:+23719200 | None:intergenic |
TAGATTGGATTAATACTATT+AGG | 0.340877 | 2_2:+23718370 | None:intergenic |
GAGATAATGGAACTTGAATC+TGG | 0.344427 | 2_2:-23718397 | Msa0244900:CDS |
ATGTTTACCTTGCTAATGTT+TGG | 0.350291 | 2_2:+23719095 | None:intergenic |
TGTTTACCTTGCTAATGTTT+GGG | 0.357210 | 2_2:+23719096 | None:intergenic |
ACCTACAAAGCAAATTAAAT+AGG | 0.358746 | 2_2:+23716933 | None:intergenic |
GATTATTCAAGCAGAGATAA+TGG | 0.360892 | 2_2:-23718410 | Msa0244900:CDS |
TTTACCTCAAGAACTTCAAT+TGG | 0.370892 | 2_2:+23718259 | None:intergenic |
ATTGTTACCTATCAAGCTCT+TGG | 0.383647 | 2_2:+23719369 | None:intergenic |
TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2_2:-23719258 | Msa0244900:intron |
TTGTTACCTATCAAGCTCTT+GGG | 0.420680 | 2_2:+23719370 | None:intergenic |
TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2_2:-23719376 | Msa0244900:intron |
TGAAAGAAGTTTAAGGTGGT+TGG | 0.451251 | 2_2:+23719508 | None:intergenic |
TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2_2:+23719378 | None:intergenic |
CCAGATGGTGCAGCATCATC+AGG | 0.460325 | 2_2:-23719200 | Msa0244900:CDS |
TCTTGATCAAAATCATAGAT+TGG | 0.462231 | 2_2:+23718355 | None:intergenic |
TGAGCTTGACATGTAACAAA+AGG | 0.468788 | 2_2:-23717159 | Msa0244900:CDS |
GTTGTTAAAGTTGAAATTGG+AGG | 0.484698 | 2_2:+23719452 | None:intergenic |
TTTGAGGAAGAAGAAAATGA+AGG | 0.486849 | 2_2:+23716898 | None:intergenic |
CTGATGATGCTGCACCATCT+GGG | 0.496200 | 2_2:+23719201 | None:intergenic |
TCACTATATATATACAAAGT+AGG | 0.497510 | 2_2:-23719554 | None:intergenic |
GCAGCTTAGGGTTACATACA+TGG | 0.504078 | 2_2:-23717200 | Msa0244900:intron |
CTTTCCAATTGAAGTTCTTG+AGG | 0.510871 | 2_2:-23718263 | Msa0244900:intron |
AGGAAGAAGAAAATGAAGGT+TGG | 0.514258 | 2_2:+23716902 | None:intergenic |
ACATTGACTCTGAGAGGAAG+AGG | 0.514432 | 2_2:-23719163 | Msa0244900:CDS |
AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2_2:-23718336 | Msa0244900:CDS |
TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2_2:+23719388 | None:intergenic |
AATTTCAACTTTAACAACCA+TGG | 0.540733 | 2_2:-23719447 | Msa0244900:exon |
GAGCTTGACATGTAACAAAA+GGG | 0.547151 | 2_2:-23717158 | Msa0244900:CDS |
TGATGATGCTGCACCATCTG+GGG | 0.561453 | 2_2:+23719202 | None:intergenic |
TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2_2:+23718328 | None:intergenic |
CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2_2:+23719430 | None:intergenic |
TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2_2:-23719414 | Msa0244900:CDS |
TTTGAAGACAGTCTTCATTG+AGG | 0.586246 | 2_2:-23717047 | Msa0244900:CDS |
AGATAATGGAACTTGAATCT+GGG | 0.592460 | 2_2:-23718396 | Msa0244900:CDS |
TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2_2:-23719437 | Msa0244900:exon |
CTAAGAACATTGACTCTGAG+AGG | 0.615826 | 2_2:-23719169 | Msa0244900:CDS |
TTGACTCTGAGAGGAAGAGG+AGG | 0.620990 | 2_2:-23719160 | Msa0244900:CDS |
TAACAAAAGGGCAGACACAA+TGG | 0.621554 | 2_2:-23717146 | Msa0244900:CDS |
ACTCTTTGCACTTAGAGCAG+TGG | 0.626022 | 2_2:-23719120 | Msa0244900:CDS |
TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | 2_2:-23719215 | Msa0244900:CDS |
CAGCTTAGGGTTACATACAT+GGG | 0.636587 | 2_2:-23717199 | Msa0244900:CDS |
AGTGGTCCCAAACATTAGCA+AGG | 0.661525 | 2_2:-23719102 | Msa0244900:intron |
TGATTGAAAGAAGTTTAAGG+TGG | 0.686687 | 2_2:+23719504 | None:intergenic |
ATACATGGGAGAGAATACAA+TGG | 0.777577 | 2_2:-23717185 | Msa0244900:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATTAATAATTAAATAA+TGG | + | chr2_2:23717398-23717417 | None:intergenic | 0.0% |
!!! | TAGGTAATTTAATTTTTTAA+GGG | - | chr2_2:23717623-23717642 | Msa0244900:intron | 10.0% |
!!! | CCTTTTTTTTTTTTTTAAAT+TGG | + | chr2_2:23718305-23718324 | None:intergenic | 10.0% |
!! | CCAATTTAAAAAAAAAAAAA+AGG | - | chr2_2:23718302-23718321 | Msa0244900:CDS | 10.0% |
!!! | AAAAAATTCTGAATTTTTTT+TGG | - | chr2_2:23718624-23718643 | Msa0244900:intron | 10.0% |
!!! | TGCTTATATTTTATTACAAA+CGG | - | chr2_2:23717572-23717591 | Msa0244900:intron | 15.0% |
!!! | GTAGGTAATTTAATTTTTTA+AGG | - | chr2_2:23717622-23717641 | Msa0244900:intron | 15.0% |
!!! | TAGTGATTGAAAATTTTATA+GGG | + | chr2_2:23718426-23718445 | None:intergenic | 15.0% |
!!! | TGAAGATTGAAAATTTTATA+GGG | - | chr2_2:23718740-23718759 | Msa0244900:intron | 15.0% |
!! | TATTTAACCCTAAAAAAAAT+AGG | - | chr2_2:23718833-23718852 | Msa0244900:intron | 15.0% |
!!! | TCTATTTCCTATTTTTTTTA+GGG | + | chr2_2:23718843-23718862 | None:intergenic | 15.0% |
!!! | ATCTATTTCCTATTTTTTTT+AGG | + | chr2_2:23718844-23718863 | None:intergenic | 15.0% |
!!! | GTAATATATTTTCTCTATTA+GGG | + | chr2_2:23719001-23719020 | None:intergenic | 15.0% |
!!! | ATTAGTACTACTCAATTTTT+TGG | - | chr2_2:23717415-23717434 | Msa0244900:intron | 20.0% |
!!! | TTAGTACTACTCAATTTTTT+GGG | - | chr2_2:23717416-23717435 | Msa0244900:intron | 20.0% |
!!! | TTTGTTTGAATTAAGTGTTT+TGG | - | chr2_2:23717465-23717484 | Msa0244900:intron | 20.0% |
!!! | TTGTTTGAATTAAGTGTTTT+GGG | - | chr2_2:23717466-23717485 | Msa0244900:intron | 20.0% |
!! | CTACTATCTTCATAAAATAT+AGG | - | chr2_2:23717495-23717514 | Msa0244900:intron | 20.0% |
!! | CTAACAACATGTTTAAAAAA+TGG | + | chr2_2:23717819-23717838 | None:intergenic | 20.0% |
!!! | TTTTTTAAACATGTTGTTAG+AGG | - | chr2_2:23717819-23717838 | Msa0244900:intron | 20.0% |
!! | GAAATAATTAAACCATATGA+TGG | + | chr2_2:23717891-23717910 | None:intergenic | 20.0% |
!! | AATTTCTTTCTAATTATGAG+TGG | - | chr2_2:23717932-23717951 | Msa0244900:intron | 20.0% |
!! | TAGATTGGATTAATACTATT+AGG | + | chr2_2:23718084-23718103 | None:intergenic | 20.0% |
!!! | TTTAACCCTTTTTTTTAAGT+TGG | + | chr2_2:23718331-23718350 | None:intergenic | 20.0% |
!!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr2_2:23718427-23718446 | None:intergenic | 20.0% |
!!! | AAATTTTCAATCACTACTTT+TGG | - | chr2_2:23718430-23718449 | Msa0244900:CDS | 20.0% |
!!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr2_2:23718708-23718727 | Msa0244900:intron | 20.0% |
!!! | AAATTTTCAATCTTCACTTT+AGG | + | chr2_2:23718736-23718755 | None:intergenic | 20.0% |
!!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr2_2:23718739-23718758 | Msa0244900:intron | 20.0% |
!! | GAAAAGTTGACATATTTATA+GGG | - | chr2_2:23718800-23718819 | Msa0244900:intron | 20.0% |
!!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr2_2:23718827-23718846 | None:intergenic | 20.0% |
!! | AACTTCAAAAAAATAGATAG+TGG | - | chr2_2:23718900-23718919 | Msa0244900:intron | 20.0% |
!! | ACTTCAAAAAAATAGATAGT+GGG | - | chr2_2:23718901-23718920 | Msa0244900:intron | 20.0% |
!!! | GGTAATATATTTTCTCTATT+AGG | + | chr2_2:23719002-23719021 | None:intergenic | 20.0% |
!! | GTTAGCAAAAAAAATAATAG+TGG | + | chr2_2:23719059-23719078 | None:intergenic | 20.0% |
!!! | TCTTTAATCTATTTGTTGTT+GGG | + | chr2_2:23719090-23719109 | None:intergenic | 20.0% |
!!! | TTCTTTAATCTATTTGTTGT+TGG | + | chr2_2:23719091-23719110 | None:intergenic | 20.0% |
!! | TGATGCTAAAAAAATAAATG+TGG | - | chr2_2:23719145-23719164 | Msa0244900:CDS | 20.0% |
!! | GATGCTAAAAAAATAAATGT+GGG | - | chr2_2:23719146-23719165 | Msa0244900:CDS | 20.0% |
!! | ATGCTAAAAAAATAAATGTG+GGG | - | chr2_2:23719147-23719166 | Msa0244900:CDS | 20.0% |
!! | AGAAAGTGAAATGAAATTAA+AGG | + | chr2_2:23719442-23719461 | None:intergenic | 20.0% |
! | TGATGATTGAAAGAAGTTTA+AGG | + | chr2_2:23716953-23716972 | None:intergenic | 25.0% |
! | ATGGTTGTTAAAGTTGAAAT+TGG | + | chr2_2:23717005-23717024 | None:intergenic | 25.0% |
! | AATTTCAACTTTAACAACCA+TGG | - | chr2_2:23717004-23717023 | Msa0244900:CDS | 25.0% |
! | ATCATGGTAATTGAGATATA+TGG | - | chr2_2:23717170-23717189 | Msa0244900:CDS | 25.0% |
! | GGTACAAAAGTAAATGAATT+TGG | - | chr2_2:23717516-23717535 | Msa0244900:intron | 25.0% |
! | AATGCAAAATTGCTCTATTT+AGG | + | chr2_2:23717687-23717706 | None:intergenic | 25.0% |
!! | TAAATAGAGCAATTTTGCAT+TGG | - | chr2_2:23717686-23717705 | Msa0244900:intron | 25.0% |
! | GAAAACTATTAACCATCATA+TGG | - | chr2_2:23717876-23717895 | Msa0244900:intron | 25.0% |
! | GGATAAAGCTTCAATTATTA+AGG | - | chr2_2:23717978-23717997 | Msa0244900:intron | 25.0% |
! | TCTTGATCAAAATCATAGAT+TGG | + | chr2_2:23718099-23718118 | None:intergenic | 25.0% |
! | AGGAAACCAACTTAAAAAAA+AGG | - | chr2_2:23718322-23718341 | Msa0244900:CDS | 25.0% |
! | GGAAACCAACTTAAAAAAAA+GGG | - | chr2_2:23718323-23718342 | Msa0244900:CDS | 25.0% |
! | GAAAAGTTGACATATTTACA+GGG | + | chr2_2:23718366-23718385 | None:intergenic | 25.0% |
!! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr2_2:23718768-23718787 | Msa0244900:intron | 25.0% |
!! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr2_2:23718769-23718788 | Msa0244900:intron | 25.0% |
! | CGAAAAGTTGACATATTTAT+AGG | - | chr2_2:23718799-23718818 | Msa0244900:intron | 25.0% |
!!! | TTTATATTTGGTTCTAAGCA+TGG | + | chr2_2:23718936-23718955 | None:intergenic | 25.0% |
! | TTAAGGTGGTGATTTATATT+TGG | + | chr2_2:23718948-23718967 | None:intergenic | 25.0% |
! | TATAAATCACCACCTTAATA+AGG | - | chr2_2:23718950-23718969 | Msa0244900:intron | 25.0% |
!!! | TTTAATCTATTTGTTGTTGG+GGG | + | chr2_2:23719088-23719107 | None:intergenic | 25.0% |
!!! | CTTTAATCTATTTGTTGTTG+GGG | + | chr2_2:23719089-23719108 | None:intergenic | 25.0% |
! | AGATTAAAGAAGAGATTGTA+AGG | - | chr2_2:23719100-23719119 | Msa0244900:intron | 25.0% |
! | TGAGTGTGTAATTTGATATA+TGG | - | chr2_2:23719222-23719241 | Msa0244900:CDS | 25.0% |
!!! | TCCTATTTAATTTGCTTTGT+AGG | - | chr2_2:23719517-23719536 | Msa0244900:five_prime_UTR | 25.0% |
! | ACCTACAAAGCAAATTAAAT+AGG | + | chr2_2:23719521-23719540 | None:intergenic | 25.0% |
!! | TTTAAGGTGGTTGGTTTATT+TGG | + | chr2_2:23716937-23716956 | None:intergenic | 30.0% |
TGATTGAAAGAAGTTTAAGG+TGG | + | chr2_2:23716950-23716969 | None:intergenic | 30.0% | |
GTTGTTAAAGTTGAAATTGG+AGG | + | chr2_2:23717002-23717021 | None:intergenic | 30.0% | |
TCACTTTGATTCAAGTATGA+AGG | - | chr2_2:23717115-23717134 | Msa0244900:CDS | 30.0% | |
GTAATTGAGATATATGGTTG+TGG | - | chr2_2:23717176-23717195 | Msa0244900:CDS | 30.0% | |
TGTTTACCTTGCTAATGTTT+GGG | + | chr2_2:23717358-23717377 | None:intergenic | 30.0% | |
ATGTTTACCTTGCTAATGTT+TGG | + | chr2_2:23717359-23717378 | None:intergenic | 30.0% | |
ACTAATATTATGTGACACAG+TGG | - | chr2_2:23717599-23717618 | Msa0244900:intron | 30.0% | |
CTAATATTATGTGACACAGT+GGG | - | chr2_2:23717600-23717619 | Msa0244900:intron | 30.0% | |
GTGATGTCTTTGATATCTAT+TGG | - | chr2_2:23717854-23717873 | Msa0244900:intron | 30.0% | |
!!! | GTGACTTTTTCTTTTTCAGA+TGG | - | chr2_2:23717957-23717976 | Msa0244900:intron | 30.0% |
GATTATTCAAGCAGAGATAA+TGG | - | chr2_2:23718041-23718060 | Msa0244900:intron | 30.0% | |
!! | AGATAATGGAACTTGAATCT+GGG | - | chr2_2:23718055-23718074 | Msa0244900:intron | 30.0% |
TTTACCTCAAGAACTTCAAT+TGG | + | chr2_2:23718195-23718214 | None:intergenic | 30.0% | |
TTGAAGTTCTTGAGGTAAAT+TGG | - | chr2_2:23718196-23718215 | Msa0244900:intron | 30.0% | |
CGAAAAGTTGACATATTTAC+AGG | + | chr2_2:23718367-23718386 | None:intergenic | 30.0% | |
! | AGTCGAAGGAAAATTTTAGA+GGG | + | chr2_2:23718397-23718416 | None:intergenic | 30.0% |
! | AAGTCGAAGGAAAATTTTAG+AGG | + | chr2_2:23718398-23718417 | None:intergenic | 30.0% |
TTATAGGGACTAAAAGTTGA+AGG | - | chr2_2:23718755-23718774 | Msa0244900:intron | 30.0% | |
TGGTATTTGATAGGTTGTAA+TGG | + | chr2_2:23719023-23719042 | None:intergenic | 30.0% | |
!! | AGTCTGATTTGGTATTTGAT+AGG | + | chr2_2:23719032-23719051 | None:intergenic | 30.0% |
!! | ATAGTGGATAAAGTCTGATT+TGG | + | chr2_2:23719043-23719062 | None:intergenic | 30.0% |
! | TGAAAGAAGTTTAAGGTGGT+TGG | + | chr2_2:23716946-23716965 | None:intergenic | 35.0% |
TTAACAACCATGGAGAACAT+TGG | - | chr2_2:23717014-23717033 | Msa0244900:CDS | 35.0% | |
TGATGAGTACAAGCTTTACT+GGG | - | chr2_2:23717037-23717056 | Msa0244900:CDS | 35.0% | |
TTGTTACCTATCAAGCTCTT+GGG | + | chr2_2:23717084-23717103 | None:intergenic | 35.0% | |
ATTGTTACCTATCAAGCTCT+TGG | + | chr2_2:23717085-23717104 | None:intergenic | 35.0% | |
TTGCTTAACATGTGCTCTAA+GGG | + | chr2_2:23717664-23717683 | None:intergenic | 35.0% | |
TATCTTAACATGTGCCTTGA+GGG | - | chr2_2:23717777-23717796 | Msa0244900:intron | 35.0% | |
!!! | AATTTTAACTTGTGCCCTCA+AGG | + | chr2_2:23717794-23717813 | None:intergenic | 35.0% |
!! | GAGATAATGGAACTTGAATC+TGG | - | chr2_2:23718054-23718073 | Msa0244900:intron | 35.0% |
CTTTCCAATTGAAGTTCTTG+AGG | - | chr2_2:23718188-23718207 | Msa0244900:intron | 35.0% | |
AAGATGATGATAGAGAGAGT+GGG | + | chr2_2:23718222-23718241 | None:intergenic | 35.0% | |
AAAGATGATGATAGAGAGAG+TGG | + | chr2_2:23718223-23718242 | None:intergenic | 35.0% | |
TTATAGGGACTAAAAGTCGA+AGG | + | chr2_2:23718411-23718430 | None:intergenic | 35.0% | |
!! | ATTTTCTCTATTAGGGTACC+TGG | + | chr2_2:23718994-23719013 | None:intergenic | 35.0% |
GCATCAATAATACAAGAGAG+AGG | + | chr2_2:23719131-23719150 | None:intergenic | 35.0% | |
ATACATGGGAGAGAATACAA+TGG | - | chr2_2:23719266-23719285 | Msa0244900:intron | 35.0% | |
TGAGCTTGACATGTAACAAA+AGG | - | chr2_2:23719292-23719311 | Msa0244900:intron | 35.0% | |
GAGCTTGACATGTAACAAAA+GGG | - | chr2_2:23719293-23719312 | Msa0244900:intron | 35.0% | |
TTTGAAGACAGTCTTCATTG+AGG | - | chr2_2:23719404-23719423 | Msa0244900:CDS | 35.0% | |
GTGATGAGTACAAGCTTTAC+TGG | - | chr2_2:23717036-23717055 | Msa0244900:CDS | 40.0% | |
!! | GGATTGGATGAAGCTTTTTC+AGG | - | chr2_2:23717209-23717228 | Msa0244900:intron | 40.0% |
!! | CTAAGAACATTGACTCTGAG+AGG | - | chr2_2:23717282-23717301 | Msa0244900:intron | 40.0% |
AAGAGGAGGAAGAAGCTTAA+TGG | - | chr2_2:23717305-23717324 | Msa0244900:intron | 40.0% | |
TATTATGTGACACAGTGGGT+AGG | - | chr2_2:23717604-23717623 | Msa0244900:intron | 40.0% | |
GTTGCTTAACATGTGCTCTA+AGG | + | chr2_2:23717665-23717684 | None:intergenic | 40.0% | |
GTATCTTAACATGTGCCTTG+AGG | - | chr2_2:23717776-23717795 | Msa0244900:intron | 40.0% | |
CTGATCTGTTCTCTTCTTCT+TGG | + | chr2_2:23718142-23718161 | None:intergenic | 40.0% | |
!! | AATGGTAGGCCTTATTAAGG+TGG | + | chr2_2:23718962-23718981 | None:intergenic | 40.0% |
!! | ATCTATTTGTTGTTGGGGGT+TGG | + | chr2_2:23719084-23719103 | None:intergenic | 40.0% |
TATATGGTTGAGTGCAGCTT+AGG | - | chr2_2:23719238-23719257 | Msa0244900:CDS | 40.0% | |
ATATGGTTGAGTGCAGCTTA+GGG | - | chr2_2:23719239-23719258 | Msa0244900:CDS | 40.0% | |
CAGCTTAGGGTTACATACAT+GGG | - | chr2_2:23719252-23719271 | Msa0244900:intron | 40.0% | |
TAACAAAAGGGCAGACACAA+TGG | - | chr2_2:23719305-23719324 | Msa0244900:intron | 40.0% | |
CTCATCACCAATGTTCTCCA+TGG | + | chr2_2:23717024-23717043 | None:intergenic | 45.0% | |
TTGGGTTTGGAGGAACATGT+TGG | + | chr2_2:23717066-23717085 | None:intergenic | 45.0% | |
TATCAAGCTCTTGGGTTTGG+AGG | + | chr2_2:23717076-23717095 | None:intergenic | 45.0% | |
TCCAAACCCAAGAGCTTGAT+AGG | - | chr2_2:23717075-23717094 | Msa0244900:CDS | 45.0% | |
ACCTATCAAGCTCTTGGGTT+TGG | + | chr2_2:23717079-23717098 | None:intergenic | 45.0% | |
TATATGGTTGTGGTTGCAGC+TGG | - | chr2_2:23717186-23717205 | Msa0244900:CDS | 45.0% | |
ATATGGTTGTGGTTGCAGCT+GGG | - | chr2_2:23717187-23717206 | Msa0244900:CDS | 45.0% | |
TATGATTCAAGCTCCCCAGA+TGG | - | chr2_2:23717236-23717255 | Msa0244900:intron | 45.0% | |
!! | ACATTGACTCTGAGAGGAAG+AGG | - | chr2_2:23717288-23717307 | Msa0244900:intron | 45.0% |
ACTCTTTGCACTTAGAGCAG+TGG | - | chr2_2:23717331-23717350 | Msa0244900:intron | 45.0% | |
AGTGGTCCCAAACATTAGCA+AGG | - | chr2_2:23717349-23717368 | Msa0244900:intron | 45.0% | |
! | AAGAGCTTCCTGTGTTGCTA+AGG | - | chr2_2:23718115-23718134 | Msa0244900:intron | 45.0% |
TTCTTGGACCTTAGCAACAC+AGG | + | chr2_2:23718126-23718145 | None:intergenic | 45.0% | |
!! | GGCAATGGTAGGCCTTATTA+AGG | + | chr2_2:23718965-23718984 | None:intergenic | 45.0% |
! | TTCTCTATTAGGGTACCTGG+TGG | + | chr2_2:23718991-23719010 | None:intergenic | 45.0% |
GCAGCTTAGGGTTACATACA+TGG | - | chr2_2:23719251-23719270 | Msa0244900:intron | 45.0% | |
! | GCCAACATCACCTCTTTTTC+AGG | - | chr2_2:23719375-23719394 | Msa0244900:intron | 45.0% |
GCCTGAAAAAGAGGTGATGT+TGG | + | chr2_2:23719379-23719398 | None:intergenic | 45.0% | |
!!! | ACATCACCTCTTTTTCAGGC+AGG | - | chr2_2:23719379-23719398 | Msa0244900:CDS | 45.0% |
CAAAAGCCTGCCTGAAAAAG+AGG | + | chr2_2:23719388-23719407 | None:intergenic | 45.0% | |
!! | TAATTAATTATAATTAATCA+TGG | - | chr2_2:23717154-23717173 | Msa0244900:CDS | 5.0% |
!! | CAAAAATTAAATTAAAAATA+GGG | + | chr2_2:23718457-23718476 | None:intergenic | 5.0% |
!! | ACAAAAATTAAATTAAAAAT+AGG | + | chr2_2:23718458-23718477 | None:intergenic | 5.0% |
!!! | ATGAATTTTTATATTTTTTA+CGG | + | chr2_2:23718585-23718604 | None:intergenic | 5.0% |
!!! | TATAATATTTTAAATTTTTC+TGG | - | chr2_2:23718656-23718675 | Msa0244900:intron | 5.0% |
!!! | AATATATATTTTTAATAAAG+AGG | + | chr2_2:23719495-23719514 | None:intergenic | 5.0% |
TATGGTTGTGGTTGCAGCTG+GGG | - | chr2_2:23717188-23717207 | Msa0244900:CDS | 50.0% | |
! | TGATGATGCTGCACCATCTG+GGG | + | chr2_2:23717252-23717271 | None:intergenic | 50.0% |
! | CTGATGATGCTGCACCATCT+GGG | + | chr2_2:23717253-23717272 | None:intergenic | 50.0% |
! | TTGACTCTGAGAGGAAGAGG+AGG | - | chr2_2:23717291-23717310 | Msa0244900:intron | 50.0% |
! | TATTAGGGTACCTGGTGGTG+TGG | + | chr2_2:23718986-23719005 | None:intergenic | 50.0% |
TTGTGGTTGCAGCTGGGGAT+TGG | - | chr2_2:23717193-23717212 | Msa0244900:CDS | 55.0% | |
! | CCTGATGATGCTGCACCATC+TGG | + | chr2_2:23717254-23717273 | None:intergenic | 55.0% |
CCAGATGGTGCAGCATCATC+AGG | - | chr2_2:23717251-23717270 | Msa0244900:intron | 55.0% | |
! | CCTGGTGGTGTGGCAATGGT+AGG | + | chr2_2:23718976-23718995 | None:intergenic | 60.0% |
CCTACCATTGCCACACCACC+AGG | - | chr2_2:23718973-23718992 | Msa0244900:intron | 60.0% | |
! | GGTACCTGGTGGTGTGGCAA+TGG | + | chr2_2:23718980-23718999 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 23716903 | 23719570 | 23716903 | ID=Msa0244900;Name=Msa0244900 |
chr2_2 | mRNA | 23716903 | 23719570 | 23716903 | ID=Msa0244900-mRNA-1;Parent=Msa0244900;Name=Msa0244900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=120|1|1|1|1|1|4|67|240 |
chr2_2 | exon | 23716903 | 23717218 | 23716903 | ID=Msa0244900-mRNA-1:exon:9111;Parent=Msa0244900-mRNA-1 |
chr2_2 | exon | 23718264 | 23718497 | 23718264 | ID=Msa0244900-mRNA-1:exon:9110;Parent=Msa0244900-mRNA-1 |
chr2_2 | exon | 23719103 | 23719268 | 23719103 | ID=Msa0244900-mRNA-1:exon:9109;Parent=Msa0244900-mRNA-1 |
chr2_2 | exon | 23719377 | 23719570 | 23719377 | ID=Msa0244900-mRNA-1:exon:9108;Parent=Msa0244900-mRNA-1 |
chr2_2 | five_prime_UTR | 23719451 | 23719570 | 23719451 | ID=Msa0244900-mRNA-1:five_prime_utr;Parent=Msa0244900-mRNA-1 |
chr2_2 | CDS | 23719377 | 23719450 | 23719377 | ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1 |
chr2_2 | CDS | 23719103 | 23719268 | 23719103 | ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1 |
chr2_2 | CDS | 23718264 | 23718497 | 23718264 | ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1 |
chr2_2 | CDS | 23716970 | 23717218 | 23716970 | ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1 |
chr2_2 | three_prime_UTR | 23716903 | 23716969 | 23716903 | ID=Msa0244900-mRNA-1:three_prime_utr;Parent=Msa0244900-mRNA-1 |
Gene Sequence |
Protein sequence |