AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244900 MtrunA17_Chr2g0298751 93.056 216 15 0 1 216 1 216 4.32e-149 415
Msa0244900 MtrunA17_Chr1g0211081 32.911 237 128 7 6 213 258 492 1.14e-21 93.2
Msa0244900 MtrunA17_Chr8g0365711 30.539 167 108 2 51 217 243 401 1.96e-21 92.0
Msa0244900 MtrunA17_Chr3g0131691 32.927 164 97 4 48 206 294 449 1.18e-17 81.6
Msa0244900 MtrunA17_Chr4g0028071 30.769 169 100 3 51 216 148 302 3.27e-16 76.6
Msa0244900 MtrunA17_Chr2g0320291 28.235 170 101 3 51 217 132 283 1.53e-15 74.3
Msa0244900 MtrunA17_Chr7g0252041 34.756 164 94 6 49 206 283 439 5.33e-15 73.6
Msa0244900 MtrunA17_Chr7g0275821 60.000 55 22 0 53 107 253 307 7.30e-15 73.2
Msa0244900 MtrunA17_Chr5g0411341 27.439 164 117 2 53 216 494 655 1.26e-14 72.8
Msa0244900 MtrunA17_Chr8g0366751 29.487 156 96 3 53 202 463 610 4.17e-14 71.2
Msa0244900 MtrunA17_Chr7g0260841 42.308 104 46 4 53 156 356 445 5.60e-14 70.9
Msa0244900 MtrunA17_Chr8g0346161 28.049 164 106 4 53 216 292 443 5.37e-13 67.8
Msa0244900 MtrunA17_Chr4g0048851 29.341 167 98 3 50 215 45 192 9.09e-13 65.5
Msa0244900 MtrunA17_Chr8g0346151 60.000 45 18 0 53 97 280 324 1.28e-12 66.6
Msa0244900 MtrunA17_Chr5g0400661 26.667 195 114 7 37 220 136 312 3.77e-12 65.1
Msa0244900 MtrunA17_Chr4g0049331 29.448 163 100 4 53 214 136 284 4.66e-12 64.3
Msa0244900 MtrunA17_Chr2g0333611 23.415 205 125 4 27 214 3 192 4.89e-12 63.5
Msa0244900 MtrunA17_Chr2g0280161 27.647 170 109 3 53 221 178 334 1.87e-11 63.2
Msa0244900 MtrunA17_Chr5g0411541 34.118 170 90 4 48 217 152 299 3.83e-11 62.0
Msa0244900 MtrunA17_Chr8g0336681 26.590 173 113 4 46 214 150 312 3.87e-11 62.0
Msa0244900 MtrunA17_Chr3g0141091 55.882 68 29 1 48 115 169 235 4.59e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244900 AT5G57150.5 63.877 227 73 7 1 224 1 221 2.41e-84 251
Msa0244900 AT5G57150.2 63.229 223 73 6 1 219 1 218 1.28e-83 249
Msa0244900 AT5G57150.1 64.840 219 69 6 1 216 1 214 1.40e-83 249
Msa0244900 AT5G57150.3 63.636 220 71 6 1 216 1 215 3.77e-83 248
Msa0244900 AT5G57150.4 57.258 248 93 7 1 240 1 243 1.05e-81 245
Msa0244900 AT4G29930.3 54.585 229 90 3 1 217 1 227 6.61e-80 241
Msa0244900 AT4G29930.7 54.585 229 90 3 1 217 1 227 6.61e-80 241
Msa0244900 AT4G29930.1 53.947 228 91 3 1 216 1 226 9.82e-79 238
Msa0244900 AT4G29930.5 54.338 219 77 3 1 217 1 198 4.03e-76 230
Msa0244900 AT4G29930.6 53.670 218 81 2 1 216 1 200 1.21e-75 229
Msa0244900 AT4G29930.2 53.670 218 78 3 1 216 1 197 5.71e-75 227
Msa0244900 AT4G29930.4 53.714 175 67 3 1 163 1 173 1.44e-53 171
Msa0244900 AT3G26744.6 35.227 176 103 5 49 220 304 472 5.33e-18 82.8
Msa0244900 AT2G28160.2 31.646 158 92 4 51 205 130 274 6.25e-17 78.6
Msa0244900 AT2G28160.1 31.646 158 92 4 51 205 130 274 6.49e-17 79.0
Msa0244900 AT2G16910.1 30.488 164 103 2 51 204 313 475 1.57e-16 78.6
Msa0244900 AT1G12860.2 32.353 170 104 3 49 216 264 424 1.58e-16 78.6
Msa0244900 AT3G26744.1 35.185 162 94 5 49 206 304 458 1.78e-16 78.6
Msa0244900 AT3G26744.4 35.185 162 94 5 49 206 304 458 1.78e-16 78.6
Msa0244900 AT3G26744.2 35.185 162 94 5 49 206 304 458 1.78e-16 78.6
Msa0244900 AT1G12860.1 32.500 160 97 3 49 206 264 414 5.71e-16 77.0
Msa0244900 AT1G01260.1 29.167 192 101 4 24 215 405 561 5.88e-16 77.0
Msa0244900 AT1G01260.2 29.167 192 101 4 24 215 405 561 5.88e-16 77.0
Msa0244900 AT1G01260.3 29.167 192 101 4 24 215 405 561 5.88e-16 77.0
Msa0244900 AT2G46510.1 61.818 55 21 0 53 107 396 450 1.56e-15 75.9
Msa0244900 AT5G46760.1 30.168 179 110 6 53 228 416 582 1.99e-15 75.5
Msa0244900 AT1G32640.1 28.916 166 106 3 53 218 453 606 4.96e-15 74.3
Msa0244900 AT4G17880.1 31.677 161 73 5 54 202 418 553 6.83e-15 73.9
Msa0244900 AT4G16430.1 46.053 76 40 1 53 127 321 396 2.81e-14 72.0
Msa0244900 AT4G21330.1 30.178 169 108 4 51 219 31 189 1.48e-12 65.1
Msa0244900 AT5G46830.1 26.220 164 106 2 53 216 344 492 1.54e-12 67.0
Msa0244900 AT1G63650.3 30.061 163 107 3 56 212 409 570 3.28e-12 65.9
Msa0244900 AT1G63650.1 30.061 163 107 3 56 212 409 570 3.28e-12 65.9
Msa0244900 AT1G63650.2 30.061 163 107 3 56 212 409 570 3.28e-12 65.9
Msa0244900 AT4G37850.2 29.268 164 97 5 53 212 153 301 2.15e-11 63.2
Msa0244900 AT4G37850.1 29.268 164 97 5 53 212 153 301 2.15e-11 63.2
Msa0244900 AT4G00870.1 43.333 60 34 0 53 112 250 309 3.33e-11 62.8
Msa0244900 AT1G10610.1 31.210 157 89 4 51 202 263 405 4.83e-11 62.4
Msa0244900 AT1G10610.3 30.818 159 91 4 51 204 166 310 5.68e-11 62.0
Msa0244900 AT1G10610.2 31.210 157 89 4 51 202 233 375 5.90e-11 62.0

Find 55 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGGTGGTTGGTTTATT+TGG 0.165944 2_2:+23719517 None:intergenic
CTGATCTGTTCTCTTCTTCT+TGG 0.200519 2_2:+23718312 None:intergenic
TGATGATTGAAAGAAGTTTA+AGG 0.235606 2_2:+23719501 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2_2:-23718473 Msa0244900:CDS
AGAAAGTGAAATGAAATTAA+AGG 0.266647 2_2:+23717012 None:intergenic
AAGAGGAGGAAGAAGCTTAA+TGG 0.285606 2_2:-23719146 Msa0244900:CDS
ACCTATCAAGCTCTTGGGTT+TGG 0.289916 2_2:+23719375 None:intergenic
ATGGTTGTTAAAGTTGAAAT+TGG 0.301895 2_2:+23719449 None:intergenic
GTGATGAGTACAAGCTTTAC+TGG 0.315934 2_2:-23719415 Msa0244900:CDS
TCCTATTTAATTTGCTTTGT+AGG 0.319572 2_2:-23716934 Msa0244900:three_prime_UTR
CCTGATGATGCTGCACCATC+TGG 0.327488 2_2:+23719200 None:intergenic
TAGATTGGATTAATACTATT+AGG 0.340877 2_2:+23718370 None:intergenic
GAGATAATGGAACTTGAATC+TGG 0.344427 2_2:-23718397 Msa0244900:CDS
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2_2:+23719095 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2_2:+23719096 None:intergenic
ACCTACAAAGCAAATTAAAT+AGG 0.358746 2_2:+23716933 None:intergenic
GATTATTCAAGCAGAGATAA+TGG 0.360892 2_2:-23718410 Msa0244900:CDS
TTTACCTCAAGAACTTCAAT+TGG 0.370892 2_2:+23718259 None:intergenic
ATTGTTACCTATCAAGCTCT+TGG 0.383647 2_2:+23719369 None:intergenic
TTGTGGTTGCAGCTGGGGAT+TGG 0.412240 2_2:-23719258 Msa0244900:intron
TTGTTACCTATCAAGCTCTT+GGG 0.420680 2_2:+23719370 None:intergenic
TCCAAACCCAAGAGCTTGAT+AGG 0.430262 2_2:-23719376 Msa0244900:intron
TGAAAGAAGTTTAAGGTGGT+TGG 0.451251 2_2:+23719508 None:intergenic
TATCAAGCTCTTGGGTTTGG+AGG 0.453409 2_2:+23719378 None:intergenic
CCAGATGGTGCAGCATCATC+AGG 0.460325 2_2:-23719200 Msa0244900:CDS
TCTTGATCAAAATCATAGAT+TGG 0.462231 2_2:+23718355 None:intergenic
TGAGCTTGACATGTAACAAA+AGG 0.468788 2_2:-23717159 Msa0244900:CDS
GTTGTTAAAGTTGAAATTGG+AGG 0.484698 2_2:+23719452 None:intergenic
TTTGAGGAAGAAGAAAATGA+AGG 0.486849 2_2:+23716898 None:intergenic
CTGATGATGCTGCACCATCT+GGG 0.496200 2_2:+23719201 None:intergenic
TCACTATATATATACAAAGT+AGG 0.497510 2_2:-23719554 None:intergenic
GCAGCTTAGGGTTACATACA+TGG 0.504078 2_2:-23717200 Msa0244900:intron
CTTTCCAATTGAAGTTCTTG+AGG 0.510871 2_2:-23718263 Msa0244900:intron
AGGAAGAAGAAAATGAAGGT+TGG 0.514258 2_2:+23716902 None:intergenic
ACATTGACTCTGAGAGGAAG+AGG 0.514432 2_2:-23719163 Msa0244900:CDS
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2_2:-23718336 Msa0244900:CDS
TTGGGTTTGGAGGAACATGT+TGG 0.533281 2_2:+23719388 None:intergenic
AATTTCAACTTTAACAACCA+TGG 0.540733 2_2:-23719447 Msa0244900:exon
GAGCTTGACATGTAACAAAA+GGG 0.547151 2_2:-23717158 Msa0244900:CDS
TGATGATGCTGCACCATCTG+GGG 0.561453 2_2:+23719202 None:intergenic
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2_2:+23718328 None:intergenic
CTCATCACCAATGTTCTCCA+TGG 0.572679 2_2:+23719430 None:intergenic
TGATGAGTACAAGCTTTACT+GGG 0.584970 2_2:-23719414 Msa0244900:CDS
TTTGAAGACAGTCTTCATTG+AGG 0.586246 2_2:-23717047 Msa0244900:CDS
AGATAATGGAACTTGAATCT+GGG 0.592460 2_2:-23718396 Msa0244900:CDS
TTAACAACCATGGAGAACAT+TGG 0.592898 2_2:-23719437 Msa0244900:exon
CTAAGAACATTGACTCTGAG+AGG 0.615826 2_2:-23719169 Msa0244900:CDS
TTGACTCTGAGAGGAAGAGG+AGG 0.620990 2_2:-23719160 Msa0244900:CDS
TAACAAAAGGGCAGACACAA+TGG 0.621554 2_2:-23717146 Msa0244900:CDS
ACTCTTTGCACTTAGAGCAG+TGG 0.626022 2_2:-23719120 Msa0244900:CDS
TATGATTCAAGCTCCCCAGA+TGG 0.634637 2_2:-23719215 Msa0244900:CDS
CAGCTTAGGGTTACATACAT+GGG 0.636587 2_2:-23717199 Msa0244900:CDS
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2_2:-23719102 Msa0244900:intron
TGATTGAAAGAAGTTTAAGG+TGG 0.686687 2_2:+23719504 None:intergenic
ATACATGGGAGAGAATACAA+TGG 0.777577 2_2:-23717185 Msa0244900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAATTAAATAA+TGG + chr2_2:23717398-23717417 None:intergenic 0.0%
!!! TAGGTAATTTAATTTTTTAA+GGG - chr2_2:23717623-23717642 Msa0244900:intron 10.0%
!!! CCTTTTTTTTTTTTTTAAAT+TGG + chr2_2:23718305-23718324 None:intergenic 10.0%
!! CCAATTTAAAAAAAAAAAAA+AGG - chr2_2:23718302-23718321 Msa0244900:CDS 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG - chr2_2:23718624-23718643 Msa0244900:intron 10.0%
!!! TGCTTATATTTTATTACAAA+CGG - chr2_2:23717572-23717591 Msa0244900:intron 15.0%
!!! GTAGGTAATTTAATTTTTTA+AGG - chr2_2:23717622-23717641 Msa0244900:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + chr2_2:23718426-23718445 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG - chr2_2:23718740-23718759 Msa0244900:intron 15.0%
!! TATTTAACCCTAAAAAAAAT+AGG - chr2_2:23718833-23718852 Msa0244900:intron 15.0%
!!! TCTATTTCCTATTTTTTTTA+GGG + chr2_2:23718843-23718862 None:intergenic 15.0%
!!! ATCTATTTCCTATTTTTTTT+AGG + chr2_2:23718844-23718863 None:intergenic 15.0%
!!! GTAATATATTTTCTCTATTA+GGG + chr2_2:23719001-23719020 None:intergenic 15.0%
!!! ATTAGTACTACTCAATTTTT+TGG - chr2_2:23717415-23717434 Msa0244900:intron 20.0%
!!! TTAGTACTACTCAATTTTTT+GGG - chr2_2:23717416-23717435 Msa0244900:intron 20.0%
!!! TTTGTTTGAATTAAGTGTTT+TGG - chr2_2:23717465-23717484 Msa0244900:intron 20.0%
!!! TTGTTTGAATTAAGTGTTTT+GGG - chr2_2:23717466-23717485 Msa0244900:intron 20.0%
!! CTACTATCTTCATAAAATAT+AGG - chr2_2:23717495-23717514 Msa0244900:intron 20.0%
!! CTAACAACATGTTTAAAAAA+TGG + chr2_2:23717819-23717838 None:intergenic 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG - chr2_2:23717819-23717838 Msa0244900:intron 20.0%
!! GAAATAATTAAACCATATGA+TGG + chr2_2:23717891-23717910 None:intergenic 20.0%
!! AATTTCTTTCTAATTATGAG+TGG - chr2_2:23717932-23717951 Msa0244900:intron 20.0%
!! TAGATTGGATTAATACTATT+AGG + chr2_2:23718084-23718103 None:intergenic 20.0%
!!! TTTAACCCTTTTTTTTAAGT+TGG + chr2_2:23718331-23718350 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + chr2_2:23718427-23718446 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - chr2_2:23718430-23718449 Msa0244900:CDS 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG - chr2_2:23718708-23718727 Msa0244900:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+AGG + chr2_2:23718736-23718755 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG - chr2_2:23718739-23718758 Msa0244900:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr2_2:23718800-23718819 Msa0244900:intron 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG + chr2_2:23718827-23718846 None:intergenic 20.0%
!! AACTTCAAAAAAATAGATAG+TGG - chr2_2:23718900-23718919 Msa0244900:intron 20.0%
!! ACTTCAAAAAAATAGATAGT+GGG - chr2_2:23718901-23718920 Msa0244900:intron 20.0%
!!! GGTAATATATTTTCTCTATT+AGG + chr2_2:23719002-23719021 None:intergenic 20.0%
!! GTTAGCAAAAAAAATAATAG+TGG + chr2_2:23719059-23719078 None:intergenic 20.0%
!!! TCTTTAATCTATTTGTTGTT+GGG + chr2_2:23719090-23719109 None:intergenic 20.0%
!!! TTCTTTAATCTATTTGTTGT+TGG + chr2_2:23719091-23719110 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG - chr2_2:23719145-23719164 Msa0244900:CDS 20.0%
!! GATGCTAAAAAAATAAATGT+GGG - chr2_2:23719146-23719165 Msa0244900:CDS 20.0%
!! ATGCTAAAAAAATAAATGTG+GGG - chr2_2:23719147-23719166 Msa0244900:CDS 20.0%
!! AGAAAGTGAAATGAAATTAA+AGG + chr2_2:23719442-23719461 None:intergenic 20.0%
! TGATGATTGAAAGAAGTTTA+AGG + chr2_2:23716953-23716972 None:intergenic 25.0%
! ATGGTTGTTAAAGTTGAAAT+TGG + chr2_2:23717005-23717024 None:intergenic 25.0%
! AATTTCAACTTTAACAACCA+TGG - chr2_2:23717004-23717023 Msa0244900:CDS 25.0%
! ATCATGGTAATTGAGATATA+TGG - chr2_2:23717170-23717189 Msa0244900:CDS 25.0%
! GGTACAAAAGTAAATGAATT+TGG - chr2_2:23717516-23717535 Msa0244900:intron 25.0%
! AATGCAAAATTGCTCTATTT+AGG + chr2_2:23717687-23717706 None:intergenic 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG - chr2_2:23717686-23717705 Msa0244900:intron 25.0%
! GAAAACTATTAACCATCATA+TGG - chr2_2:23717876-23717895 Msa0244900:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG - chr2_2:23717978-23717997 Msa0244900:intron 25.0%
! TCTTGATCAAAATCATAGAT+TGG + chr2_2:23718099-23718118 None:intergenic 25.0%
! AGGAAACCAACTTAAAAAAA+AGG - chr2_2:23718322-23718341 Msa0244900:CDS 25.0%
! GGAAACCAACTTAAAAAAAA+GGG - chr2_2:23718323-23718342 Msa0244900:CDS 25.0%
! GAAAAGTTGACATATTTACA+GGG + chr2_2:23718366-23718385 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr2_2:23718768-23718787 Msa0244900:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr2_2:23718769-23718788 Msa0244900:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr2_2:23718799-23718818 Msa0244900:intron 25.0%
!!! TTTATATTTGGTTCTAAGCA+TGG + chr2_2:23718936-23718955 None:intergenic 25.0%
! TTAAGGTGGTGATTTATATT+TGG + chr2_2:23718948-23718967 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG - chr2_2:23718950-23718969 Msa0244900:intron 25.0%
!!! TTTAATCTATTTGTTGTTGG+GGG + chr2_2:23719088-23719107 None:intergenic 25.0%
!!! CTTTAATCTATTTGTTGTTG+GGG + chr2_2:23719089-23719108 None:intergenic 25.0%
! AGATTAAAGAAGAGATTGTA+AGG - chr2_2:23719100-23719119 Msa0244900:intron 25.0%
! TGAGTGTGTAATTTGATATA+TGG - chr2_2:23719222-23719241 Msa0244900:CDS 25.0%
!!! TCCTATTTAATTTGCTTTGT+AGG - chr2_2:23719517-23719536 Msa0244900:five_prime_UTR 25.0%
! ACCTACAAAGCAAATTAAAT+AGG + chr2_2:23719521-23719540 None:intergenic 25.0%
!! TTTAAGGTGGTTGGTTTATT+TGG + chr2_2:23716937-23716956 None:intergenic 30.0%
TGATTGAAAGAAGTTTAAGG+TGG + chr2_2:23716950-23716969 None:intergenic 30.0%
GTTGTTAAAGTTGAAATTGG+AGG + chr2_2:23717002-23717021 None:intergenic 30.0%
TCACTTTGATTCAAGTATGA+AGG - chr2_2:23717115-23717134 Msa0244900:CDS 30.0%
GTAATTGAGATATATGGTTG+TGG - chr2_2:23717176-23717195 Msa0244900:CDS 30.0%
TGTTTACCTTGCTAATGTTT+GGG + chr2_2:23717358-23717377 None:intergenic 30.0%
ATGTTTACCTTGCTAATGTT+TGG + chr2_2:23717359-23717378 None:intergenic 30.0%
ACTAATATTATGTGACACAG+TGG - chr2_2:23717599-23717618 Msa0244900:intron 30.0%
CTAATATTATGTGACACAGT+GGG - chr2_2:23717600-23717619 Msa0244900:intron 30.0%
GTGATGTCTTTGATATCTAT+TGG - chr2_2:23717854-23717873 Msa0244900:intron 30.0%
!!! GTGACTTTTTCTTTTTCAGA+TGG - chr2_2:23717957-23717976 Msa0244900:intron 30.0%
GATTATTCAAGCAGAGATAA+TGG - chr2_2:23718041-23718060 Msa0244900:intron 30.0%
!! AGATAATGGAACTTGAATCT+GGG - chr2_2:23718055-23718074 Msa0244900:intron 30.0%
TTTACCTCAAGAACTTCAAT+TGG + chr2_2:23718195-23718214 None:intergenic 30.0%
TTGAAGTTCTTGAGGTAAAT+TGG - chr2_2:23718196-23718215 Msa0244900:intron 30.0%
CGAAAAGTTGACATATTTAC+AGG + chr2_2:23718367-23718386 None:intergenic 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG + chr2_2:23718397-23718416 None:intergenic 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG + chr2_2:23718398-23718417 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr2_2:23718755-23718774 Msa0244900:intron 30.0%
TGGTATTTGATAGGTTGTAA+TGG + chr2_2:23719023-23719042 None:intergenic 30.0%
!! AGTCTGATTTGGTATTTGAT+AGG + chr2_2:23719032-23719051 None:intergenic 30.0%
!! ATAGTGGATAAAGTCTGATT+TGG + chr2_2:23719043-23719062 None:intergenic 30.0%
! TGAAAGAAGTTTAAGGTGGT+TGG + chr2_2:23716946-23716965 None:intergenic 35.0%
TTAACAACCATGGAGAACAT+TGG - chr2_2:23717014-23717033 Msa0244900:CDS 35.0%
TGATGAGTACAAGCTTTACT+GGG - chr2_2:23717037-23717056 Msa0244900:CDS 35.0%
TTGTTACCTATCAAGCTCTT+GGG + chr2_2:23717084-23717103 None:intergenic 35.0%
ATTGTTACCTATCAAGCTCT+TGG + chr2_2:23717085-23717104 None:intergenic 35.0%
TTGCTTAACATGTGCTCTAA+GGG + chr2_2:23717664-23717683 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG - chr2_2:23717777-23717796 Msa0244900:intron 35.0%
!!! AATTTTAACTTGTGCCCTCA+AGG + chr2_2:23717794-23717813 None:intergenic 35.0%
!! GAGATAATGGAACTTGAATC+TGG - chr2_2:23718054-23718073 Msa0244900:intron 35.0%
CTTTCCAATTGAAGTTCTTG+AGG - chr2_2:23718188-23718207 Msa0244900:intron 35.0%
AAGATGATGATAGAGAGAGT+GGG + chr2_2:23718222-23718241 None:intergenic 35.0%
AAAGATGATGATAGAGAGAG+TGG + chr2_2:23718223-23718242 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG + chr2_2:23718411-23718430 None:intergenic 35.0%
!! ATTTTCTCTATTAGGGTACC+TGG + chr2_2:23718994-23719013 None:intergenic 35.0%
GCATCAATAATACAAGAGAG+AGG + chr2_2:23719131-23719150 None:intergenic 35.0%
ATACATGGGAGAGAATACAA+TGG - chr2_2:23719266-23719285 Msa0244900:intron 35.0%
TGAGCTTGACATGTAACAAA+AGG - chr2_2:23719292-23719311 Msa0244900:intron 35.0%
GAGCTTGACATGTAACAAAA+GGG - chr2_2:23719293-23719312 Msa0244900:intron 35.0%
TTTGAAGACAGTCTTCATTG+AGG - chr2_2:23719404-23719423 Msa0244900:CDS 35.0%
GTGATGAGTACAAGCTTTAC+TGG - chr2_2:23717036-23717055 Msa0244900:CDS 40.0%
!! GGATTGGATGAAGCTTTTTC+AGG - chr2_2:23717209-23717228 Msa0244900:intron 40.0%
!! CTAAGAACATTGACTCTGAG+AGG - chr2_2:23717282-23717301 Msa0244900:intron 40.0%
AAGAGGAGGAAGAAGCTTAA+TGG - chr2_2:23717305-23717324 Msa0244900:intron 40.0%
TATTATGTGACACAGTGGGT+AGG - chr2_2:23717604-23717623 Msa0244900:intron 40.0%
GTTGCTTAACATGTGCTCTA+AGG + chr2_2:23717665-23717684 None:intergenic 40.0%
GTATCTTAACATGTGCCTTG+AGG - chr2_2:23717776-23717795 Msa0244900:intron 40.0%
CTGATCTGTTCTCTTCTTCT+TGG + chr2_2:23718142-23718161 None:intergenic 40.0%
!! AATGGTAGGCCTTATTAAGG+TGG + chr2_2:23718962-23718981 None:intergenic 40.0%
!! ATCTATTTGTTGTTGGGGGT+TGG + chr2_2:23719084-23719103 None:intergenic 40.0%
TATATGGTTGAGTGCAGCTT+AGG - chr2_2:23719238-23719257 Msa0244900:CDS 40.0%
ATATGGTTGAGTGCAGCTTA+GGG - chr2_2:23719239-23719258 Msa0244900:CDS 40.0%
CAGCTTAGGGTTACATACAT+GGG - chr2_2:23719252-23719271 Msa0244900:intron 40.0%
TAACAAAAGGGCAGACACAA+TGG - chr2_2:23719305-23719324 Msa0244900:intron 40.0%
CTCATCACCAATGTTCTCCA+TGG + chr2_2:23717024-23717043 None:intergenic 45.0%
TTGGGTTTGGAGGAACATGT+TGG + chr2_2:23717066-23717085 None:intergenic 45.0%
TATCAAGCTCTTGGGTTTGG+AGG + chr2_2:23717076-23717095 None:intergenic 45.0%
TCCAAACCCAAGAGCTTGAT+AGG - chr2_2:23717075-23717094 Msa0244900:CDS 45.0%
ACCTATCAAGCTCTTGGGTT+TGG + chr2_2:23717079-23717098 None:intergenic 45.0%
TATATGGTTGTGGTTGCAGC+TGG - chr2_2:23717186-23717205 Msa0244900:CDS 45.0%
ATATGGTTGTGGTTGCAGCT+GGG - chr2_2:23717187-23717206 Msa0244900:CDS 45.0%
TATGATTCAAGCTCCCCAGA+TGG - chr2_2:23717236-23717255 Msa0244900:intron 45.0%
!! ACATTGACTCTGAGAGGAAG+AGG - chr2_2:23717288-23717307 Msa0244900:intron 45.0%
ACTCTTTGCACTTAGAGCAG+TGG - chr2_2:23717331-23717350 Msa0244900:intron 45.0%
AGTGGTCCCAAACATTAGCA+AGG - chr2_2:23717349-23717368 Msa0244900:intron 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG - chr2_2:23718115-23718134 Msa0244900:intron 45.0%
TTCTTGGACCTTAGCAACAC+AGG + chr2_2:23718126-23718145 None:intergenic 45.0%
!! GGCAATGGTAGGCCTTATTA+AGG + chr2_2:23718965-23718984 None:intergenic 45.0%
! TTCTCTATTAGGGTACCTGG+TGG + chr2_2:23718991-23719010 None:intergenic 45.0%
GCAGCTTAGGGTTACATACA+TGG - chr2_2:23719251-23719270 Msa0244900:intron 45.0%
! GCCAACATCACCTCTTTTTC+AGG - chr2_2:23719375-23719394 Msa0244900:intron 45.0%
GCCTGAAAAAGAGGTGATGT+TGG + chr2_2:23719379-23719398 None:intergenic 45.0%
!!! ACATCACCTCTTTTTCAGGC+AGG - chr2_2:23719379-23719398 Msa0244900:CDS 45.0%
CAAAAGCCTGCCTGAAAAAG+AGG + chr2_2:23719388-23719407 None:intergenic 45.0%
!! TAATTAATTATAATTAATCA+TGG - chr2_2:23717154-23717173 Msa0244900:CDS 5.0%
!! CAAAAATTAAATTAAAAATA+GGG + chr2_2:23718457-23718476 None:intergenic 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG + chr2_2:23718458-23718477 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG + chr2_2:23718585-23718604 None:intergenic 5.0%
!!! TATAATATTTTAAATTTTTC+TGG - chr2_2:23718656-23718675 Msa0244900:intron 5.0%
!!! AATATATATTTTTAATAAAG+AGG + chr2_2:23719495-23719514 None:intergenic 5.0%
TATGGTTGTGGTTGCAGCTG+GGG - chr2_2:23717188-23717207 Msa0244900:CDS 50.0%
! TGATGATGCTGCACCATCTG+GGG + chr2_2:23717252-23717271 None:intergenic 50.0%
! CTGATGATGCTGCACCATCT+GGG + chr2_2:23717253-23717272 None:intergenic 50.0%
! TTGACTCTGAGAGGAAGAGG+AGG - chr2_2:23717291-23717310 Msa0244900:intron 50.0%
! TATTAGGGTACCTGGTGGTG+TGG + chr2_2:23718986-23719005 None:intergenic 50.0%
TTGTGGTTGCAGCTGGGGAT+TGG - chr2_2:23717193-23717212 Msa0244900:CDS 55.0%
! CCTGATGATGCTGCACCATC+TGG + chr2_2:23717254-23717273 None:intergenic 55.0%
CCAGATGGTGCAGCATCATC+AGG - chr2_2:23717251-23717270 Msa0244900:intron 55.0%
! CCTGGTGGTGTGGCAATGGT+AGG + chr2_2:23718976-23718995 None:intergenic 60.0%
CCTACCATTGCCACACCACC+AGG - chr2_2:23718973-23718992 Msa0244900:intron 60.0%
! GGTACCTGGTGGTGTGGCAA+TGG + chr2_2:23718980-23718999 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23716903 23719570 23716903 ID=Msa0244900;Name=Msa0244900
chr2_2 mRNA 23716903 23719570 23716903 ID=Msa0244900-mRNA-1;Parent=Msa0244900;Name=Msa0244900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=120|1|1|1|1|1|4|67|240
chr2_2 exon 23716903 23717218 23716903 ID=Msa0244900-mRNA-1:exon:9111;Parent=Msa0244900-mRNA-1
chr2_2 exon 23718264 23718497 23718264 ID=Msa0244900-mRNA-1:exon:9110;Parent=Msa0244900-mRNA-1
chr2_2 exon 23719103 23719268 23719103 ID=Msa0244900-mRNA-1:exon:9109;Parent=Msa0244900-mRNA-1
chr2_2 exon 23719377 23719570 23719377 ID=Msa0244900-mRNA-1:exon:9108;Parent=Msa0244900-mRNA-1
chr2_2 five_prime_UTR 23719451 23719570 23719451 ID=Msa0244900-mRNA-1:five_prime_utr;Parent=Msa0244900-mRNA-1
chr2_2 CDS 23719377 23719450 23719377 ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1
chr2_2 CDS 23719103 23719268 23719103 ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1
chr2_2 CDS 23718264 23718497 23718264 ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1
chr2_2 CDS 23716970 23717218 23716970 ID=Msa0244900-mRNA-1:cds;Parent=Msa0244900-mRNA-1
chr2_2 three_prime_UTR 23716903 23716969 23716903 ID=Msa0244900-mRNA-1:three_prime_utr;Parent=Msa0244900-mRNA-1
Gene Sequence

>Msa0244900

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGCTGGGGATTGGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCAGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGACTCTGAGAGGAAGAGGAGGAAGAAGCTTAATGGAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGAGAAGATTATTCAAGCAGAGATAATGGAACTTGAATCTGGGATGCCTAATAGTATTAATCCAATCTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCAATTGAAGTTCTTGAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGTTACTTTTTTATCCTTTAATTTCATTTCACTTTCTTTATTTTATAATAAATATATGATAGTTCATCCTCTTTATTAA

Protein sequence

>Msa0244900

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIDSERKRRKKLNGRLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQEKIIQAEIMELESGMPNSINPIYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPIEVLELRVTYMGENTMVVSLTCNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEVTFLSFNFISLSLFYNKYMIVHPLY*