Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798700 | XP_024639523.1 | 92.857 | 140 | 10 | 0 | 1 | 140 | 1 | 140 | 8.73e-80 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798700 | A0A396HQF8 | 92.857 | 140 | 10 | 0 | 1 | 140 | 1 | 140 | 4.17e-80 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609220 | Msa0798700 | 0.811138 | 8.133400e-51 | -8.615850e-47 |
| Msa0703660 | Msa0798700 | 0.809433 | 1.896520e-50 | -8.615850e-47 |
| Msa0798700 | Msa1164010 | 0.800462 | 1.425050e-48 | -8.615850e-47 |
| Msa0798700 | Msa1201810 | 0.801597 | 8.354876e-49 | -8.615850e-47 |
| Msa0798700 | Msa1381650 | 0.811901 | 5.552257e-51 | -8.615850e-47 |
| Msa0798700 | Msa1385140 | 0.963254 | 7.342092e-122 | -8.615850e-47 |
| Msa0798700 | Msa1460320 | -0.800788 | 1.222845e-48 | -8.615850e-47 |
| Msa0183870 | Msa0798700 | 0.801173 | 1.020336e-48 | -8.615850e-47 |
| Msa0387370 | Msa0798700 | 0.804982 | 1.662846e-49 | -8.615850e-47 |
| Msa0485680 | Msa0798700 | 0.815954 | 7.095167e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798700 | MtrunA17_Chr5g0403181 | 92.857 | 140 | 10 | 0 | 1 | 140 | 1 | 140 | 8.03e-84 | 248 |
| Msa0798700 | MtrunA17_Chr4g0034291 | 42.045 | 88 | 48 | 1 | 53 | 140 | 25 | 109 | 4.83e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTCCCCTTCAAAGAATT+TGG | 0.160039 | 5_3:-11485262 | Msa0798700:CDS |
| ACAAGAGATGCTAGTGAAAA+TGG | 0.262061 | 5_3:-11486315 | Msa0798700:CDS |
| GACCTTCAGCTTTGTCTTGA+AGG | 0.284507 | 5_3:-11482107 | Msa0798700:CDS |
| TCTTGCAAGCATTGTTGTTT+CGG | 0.326610 | 5_3:-11486184 | Msa0798700:CDS |
| GATAGAGGAGAAAGTTAAAA+AGG | 0.358089 | 5_3:-11481994 | Msa0798700:CDS |
| TCTGAGTTTGTGGTTGGGCT+TGG | 0.394928 | 5_3:-11482027 | Msa0798700:CDS |
| CGGTTGTTGGTGTTTGAAGA+AGG | 0.401311 | 5_3:-11481970 | Msa0798700:CDS |
| ATACAATCCAAATTCTTTGA+AGG | 0.435590 | 5_3:+11485255 | None:intergenic |
| CATTTCTAATGGTGCAATCA+AGG | 0.436633 | 5_3:-11486223 | Msa0798700:CDS |
| ACCACAAACTCAGAAAATAA+TGG | 0.440777 | 5_3:+11482036 | None:intergenic |
| ACAACAATGCTTGCAAGAAC+CGG | 0.444006 | 5_3:+11486189 | None:intergenic |
| TCGAAGACCATCATCGATCA+TGG | 0.465762 | 5_3:-11486253 | Msa0798700:CDS |
| TACAATCCAAATTCTTTGAA+GGG | 0.478754 | 5_3:+11485256 | None:intergenic |
| GAACTACTTTCCTTTCACTT+TGG | 0.483373 | 5_3:+11485281 | None:intergenic |
| ATGGTCATGAACATTTCTAA+TGG | 0.483592 | 5_3:-11486234 | Msa0798700:CDS |
| ATGCAGAATCAATGTGCGTA+GGG | 0.484037 | 5_3:-11486128 | Msa0798700:CDS |
| CTTGGAAATTACAGAGATAG+AGG | 0.484084 | 5_3:-11482009 | Msa0798700:CDS |
| TCGGTGATTATTGTGATACT+TGG | 0.484947 | 5_3:-11482071 | Msa0798700:CDS |
| GGATAATTAGAATTCGAGAT+AGG | 0.487165 | 5_3:+11486042 | None:intergenic |
| AGATGCTAGTGAAAATGGTT+TGG | 0.505903 | 5_3:-11486310 | Msa0798700:CDS |
| TTTGCTTCTTCCAAAGTGAA+AGG | 0.515706 | 5_3:-11485291 | Msa0798700:CDS |
| GGTTGTTGGTGTTTGAAGAA+GGG | 0.533579 | 5_3:-11481969 | Msa0798700:CDS |
| GATACATGTTCAGAAATTAA+CGG | 0.539026 | 5_3:-11482185 | Msa0798700:CDS |
| TGTTCAGAAATTAACGGTGC+TGG | 0.540215 | 5_3:-11482179 | Msa0798700:CDS |
| TCTGAACATGTATCTTCTTG+CGG | 0.540402 | 5_3:+11482194 | None:intergenic |
| AATCAAGGAATACAAGAAAC+CGG | 0.545666 | 5_3:-11486208 | Msa0798700:CDS |
| CATAGAAGTTGAAGAGACAA+TGG | 0.576223 | 5_3:+11486021 | None:intergenic |
| TTCATGACCATGATCGATGA+TGG | 0.589478 | 5_3:+11486246 | None:intergenic |
| GAAGAAGCAAAATGCACAAG+AGG | 0.591620 | 5_3:+11485303 | None:intergenic |
| AATGCAGAATCAATGTGCGT+AGG | 0.594399 | 5_3:-11486129 | Msa0798700:CDS |
| ACAATCCAAATTCTTTGAAG+GGG | 0.596411 | 5_3:+11485257 | None:intergenic |
| TGAAGGTGTGATCTTTGTGT+CGG | 0.601785 | 5_3:-11482090 | Msa0798700:CDS |
| TTAACTTACATTGGAAAGTG+CGG | 0.612363 | 5_3:+11485975 | None:intergenic |
| CACCTTCAAGACAAAGCTGA+AGG | 0.617223 | 5_3:+11482105 | None:intergenic |
| GCTGGTGAGATCTCTTTACA+AGG | 0.632364 | 5_3:-11482161 | Msa0798700:CDS |
| TCGTCTTCATCAGAAACTCG+TGG | 0.662517 | 5_3:+11486096 | None:intergenic |
| TGCAGAATCAATGTGCGTAG+GGG | 0.674490 | 5_3:-11486127 | Msa0798700:CDS |
| ACAATGAAGTAGATTCGACC+CGG | 0.685668 | 5_3:+11486066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTGAAAATTTTATATAAA+AGG | + | chr5_3:11483353-11483372 | None:intergenic | 10.0% |
| !!! | ATATAAATTGATTCAATATA+TGG | - | chr5_3:11484111-11484130 | Msa0798700:intron | 10.0% |
| !! | ATTGTTTAATATTATATCAA+TGG | + | chr5_3:11485028-11485047 | None:intergenic | 10.0% |
| !! | TATAATATTAAACAATTCAA+TGG | - | chr5_3:11485032-11485051 | Msa0798700:intron | 10.0% |
| !!! | AAAAAGTTCATAATTTTTTT+TGG | - | chr5_3:11485233-11485252 | Msa0798700:intron | 10.0% |
| !!! | AAAAGTTCATAATTTTTTTT+GGG | - | chr5_3:11485234-11485253 | Msa0798700:intron | 10.0% |
| !! | AAATAAAAAATATTTGTTCT+GGG | + | chr5_3:11485435-11485454 | None:intergenic | 10.0% |
| !! | AAAATAAAAAATATTTGTTC+TGG | + | chr5_3:11485436-11485455 | None:intergenic | 10.0% |
| !!! | TTATTAAAAATTTTATGAGC+TGG | - | chr5_3:11482512-11482531 | Msa0798700:intron | 15.0% |
| !! | GACTTATATTTGAATATATT+TGG | - | chr5_3:11482807-11482826 | Msa0798700:intron | 15.0% |
| !! | ATTAATTTATAGTTGGAAAT+TGG | + | chr5_3:11482890-11482909 | None:intergenic | 15.0% |
| !! | ACAAAACATTAATTTATAGT+TGG | + | chr5_3:11482897-11482916 | None:intergenic | 15.0% |
| !!! | ATTATAAACTTTTACTTTTC+AGG | - | chr5_3:11483632-11483651 | Msa0798700:intron | 15.0% |
| !! | GTGTTAAAAAAATAACAAAA+TGG | - | chr5_3:11483695-11483714 | Msa0798700:intron | 15.0% |
| !! | AATTTGGTTGAATAATATTA+TGG | - | chr5_3:11483734-11483753 | Msa0798700:intron | 15.0% |
| !! | ATTTGGTTGAATAATATTAT+GGG | - | chr5_3:11483735-11483754 | Msa0798700:intron | 15.0% |
| !! | TTTATATGATTATTGTGTAT+TGG | + | chr5_3:11484044-11484063 | None:intergenic | 15.0% |
| !! | TACACAATAATCATATAAAA+TGG | - | chr5_3:11484045-11484064 | Msa0798700:intron | 15.0% |
| !! | ATGAAAATTAATTAAGCATA+TGG | + | chr5_3:11484207-11484226 | None:intergenic | 15.0% |
| !! | CATTCAATAAATTATATATG+TGG | - | chr5_3:11484700-11484719 | Msa0798700:intron | 15.0% |
| !! | AATTATGGAACAAAATAATT+AGG | - | chr5_3:11485339-11485358 | Msa0798700:CDS | 15.0% |
| !! | ATTATGGAACAAAATAATTA+GGG | - | chr5_3:11485340-11485359 | Msa0798700:CDS | 15.0% |
| !! | TAATAGCAACTTAATAACTT+TGG | + | chr5_3:11482621-11482640 | None:intergenic | 20.0% |
| !! | AAGGGAATTATTACTATAAA+AGG | + | chr5_3:11483285-11483304 | None:intergenic | 20.0% |
| !!! | ATAGTAATAATTCCCTTTTA+TGG | - | chr5_3:11483288-11483307 | Msa0798700:intron | 20.0% |
| !!! | CTTTTAAAATATCGATCTTA+AGG | - | chr5_3:11483372-11483391 | Msa0798700:intron | 20.0% |
| !! | TCATGTTAGCATAATAAATT+TGG | - | chr5_3:11483718-11483737 | Msa0798700:intron | 20.0% |
| !!! | AGGTTCATATATTTTAAATG+CGG | + | chr5_3:11484592-11484611 | None:intergenic | 20.0% |
| !!! | TAAGCAAAAGTTGATTTTTT+AGG | + | chr5_3:11484763-11484782 | None:intergenic | 20.0% |
| !! | CACTACAATTCTATTATTAT+TGG | + | chr5_3:11485127-11485146 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr5_3:11485726-11485745 | None:intergenic | 20.0% |
| !!! | TAAGAAACAATTGACATTTT+TGG | - | chr5_3:11485731-11485750 | Msa0798700:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr5_3:11485820-11485839 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr5_3:11485825-11485844 | Msa0798700:intron | 20.0% |
| !!! | TAAGAAACTTTTCACTTTTT+TGG | - | chr5_3:11485861-11485880 | Msa0798700:intron | 20.0% |
| !! | TCGATTGAAAAAACATAAAA+TGG | + | chr5_3:11486106-11486125 | None:intergenic | 20.0% |
| ! | TTAACGCTATTAACTTACAT+TGG | + | chr5_3:11482380-11482399 | None:intergenic | 25.0% |
| !! | TAAACAATGCACTTTTATAC+CGG | + | chr5_3:11482722-11482741 | None:intergenic | 25.0% |
| !!! | TTGGGAATTGATTTTTATAC+AGG | + | chr5_3:11482857-11482876 | None:intergenic | 25.0% |
| ! | TACAATCCAAATTCTTTGAA+GGG | + | chr5_3:11483090-11483109 | None:intergenic | 25.0% |
| ! | ATACAATCCAAATTCTTTGA+AGG | + | chr5_3:11483091-11483110 | None:intergenic | 25.0% |
| ! | ATTGGTTAAGGATATGAAAA+AGG | - | chr5_3:11483193-11483212 | Msa0798700:intron | 25.0% |
| ! | CTATATAGACTATTCATTGT+CGG | + | chr5_3:11483474-11483493 | None:intergenic | 25.0% |
| !!! | CTTCTTTGTTATGTTTTTCA+TGG | + | chr5_3:11484181-11484200 | None:intergenic | 25.0% |
| !! | TAATTAATTTTCATCACCCA+TGG | - | chr5_3:11484213-11484232 | Msa0798700:intron | 25.0% |
| ! | GATGAAGGAAATAGAATTAT+TGG | + | chr5_3:11484267-11484286 | None:intergenic | 25.0% |
| ! | CAAATTTAGTGTTTAGATGA+AGG | + | chr5_3:11484282-11484301 | None:intergenic | 25.0% |
| ! | ATCTAAACACTAAATTTGAG+AGG | - | chr5_3:11484284-11484303 | Msa0798700:intron | 25.0% |
| !!! | TAAATCACACAGTACTTTTT+AGG | - | chr5_3:11484471-11484490 | Msa0798700:intron | 25.0% |
| !! | ATAATATTAGGTGGATTCTA+GGG | + | chr5_3:11484531-11484550 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr5_3:11485886-11485905 | None:intergenic | 25.0% |
| !! | ATAAATCCAAACCTTTTCAT+TGG | - | chr5_3:11484865-11484884 | Msa0798700:intron | 25.0% |
| !! | AGAAACATTGACTGAAATAA+TGG | - | chr5_3:11484921-11484940 | Msa0798700:intron | 25.0% |
| ! | GCTCTAATTCTACATAAAAA+TGG | + | chr5_3:11485376-11485395 | None:intergenic | 25.0% |
| !!! | AAAATATTTGTTCTGGGAAA+GGG | + | chr5_3:11485429-11485448 | None:intergenic | 25.0% |
| !!! | AAAAATATTTGTTCTGGGAA+AGG | + | chr5_3:11485430-11485449 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr5_3:11485721-11485740 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr5_3:11485830-11485849 | Msa0798700:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr5_3:11485886-11485905 | Msa0798700:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr5_3:11485886-11485905 | None:intergenic | 25.0% |
| ! | GATACATGTTCAGAAATTAA+CGG | - | chr5_3:11486158-11486177 | Msa0798700:CDS | 25.0% |
| ATGGTCATGAACATTTCTAA+TGG | - | chr5_3:11482109-11482128 | Msa0798700:CDS | 30.0% | |
| AATCAAGGAATACAAGAAAC+CGG | - | chr5_3:11482135-11482154 | Msa0798700:CDS | 30.0% | |
| GGATAATTAGAATTCGAGAT+AGG | + | chr5_3:11482304-11482323 | None:intergenic | 30.0% | |
| TTAACTTACATTGGAAAGTG+CGG | + | chr5_3:11482371-11482390 | None:intergenic | 30.0% | |
| ! | AACTAATTTAGTTCACCTAG+TGG | - | chr5_3:11482474-11482493 | Msa0798700:intron | 30.0% |
| ! | ACTAATTTAGTTCACCTAGT+GGG | - | chr5_3:11482475-11482494 | Msa0798700:intron | 30.0% |
| ATAAATTCAAAGATCCCACT+AGG | + | chr5_3:11482492-11482511 | None:intergenic | 30.0% | |
| !!! | TGATAAAGATTTTAGAACCC+CGG | + | chr5_3:11482651-11482670 | None:intergenic | 30.0% |
| !! | TCAATTGTTCTAAAAATCCC+CGG | - | chr5_3:11482668-11482687 | Msa0798700:intron | 30.0% |
| ! | GGTATAAAAGTGCATTGTTT+AGG | - | chr5_3:11482721-11482740 | Msa0798700:intron | 30.0% |
| !!! | GAAATTGGAACTTTTGGTTT+GGG | + | chr5_3:11482875-11482894 | None:intergenic | 30.0% |
| ! | TAGTTGGAAATTGGAACTTT+TGG | + | chr5_3:11482881-11482900 | None:intergenic | 30.0% |
| ! | ACAATCCAAATTCTTTGAAG+GGG | + | chr5_3:11483089-11483108 | None:intergenic | 30.0% |
| !! | TGAAGGTCTAGATTTTGATA+TGG | - | chr5_3:11483145-11483164 | Msa0798700:intron | 30.0% |
| TTGATATGGAAAATGCTAAC+CGG | - | chr5_3:11483159-11483178 | Msa0798700:intron | 30.0% | |
| AGGTTAAGCATACCATAAAA+GGG | + | chr5_3:11483303-11483322 | None:intergenic | 30.0% | |
| CGACAATGAATAGTCTATAT+AGG | - | chr5_3:11483472-11483491 | Msa0798700:intron | 30.0% | |
| CGACATTAATATGTTGTCTA+CGG | - | chr5_3:11483560-11483579 | Msa0798700:intron | 30.0% | |
| TGGTTGAATAATATTATGGG+TGG | - | chr5_3:11483738-11483757 | Msa0798700:intron | 30.0% | |
| ! | TAATATTATGGGTGGATTCT+AGG | - | chr5_3:11483746-11483765 | Msa0798700:intron | 30.0% |
| ! | AATATTATGGGTGGATTCTA+GGG | - | chr5_3:11483747-11483766 | Msa0798700:intron | 30.0% |
| !! | TTTTGCAGATTTTAGCATGT+TGG | + | chr5_3:11483924-11483943 | None:intergenic | 30.0% |
| CACGCAAATAAAAGTCAAAA+GGG | + | chr5_3:11484079-11484098 | None:intergenic | 30.0% | |
| ACACGCAAATAAAAGTCAAA+AGG | + | chr5_3:11484080-11484099 | None:intergenic | 30.0% | |
| ! | CATAATATTAGGTGGATTCT+AGG | + | chr5_3:11484532-11484551 | None:intergenic | 30.0% |
| ATCCACCTAATATTATGTAG+AGG | - | chr5_3:11484535-11484554 | Msa0798700:intron | 30.0% | |
| AACCTCTACATAATATTAGG+TGG | + | chr5_3:11484540-11484559 | None:intergenic | 30.0% | |
| ACCTAATATTATGTAGAGGT+TGG | - | chr5_3:11484539-11484558 | Msa0798700:intron | 30.0% | |
| CCTAATATTATGTAGAGGTT+GGG | - | chr5_3:11484540-11484559 | Msa0798700:intron | 30.0% | |
| ! | ATTTTAAATGCGGAAGAATG+AGG | + | chr5_3:11484582-11484601 | None:intergenic | 30.0% |
| ! | TTTTGCTTATAATAGTGACC+GGG | + | chr5_3:11484774-11484793 | None:intergenic | 30.0% |
| ! | CTTTTGCTTATAATAGTGAC+CGG | + | chr5_3:11484773-11484792 | None:intergenic | 30.0% |
| ! | CTTTTGCTTATAATAGTGAC+CGG | - | chr5_3:11484773-11484792 | Msa0798700:intron | 30.0% |
| ! | TTTTAGTCCTCACATTTTTC+TGG | - | chr5_3:11484818-11484837 | Msa0798700:intron | 30.0% |
| ! | TTTAGTCCTCACATTTTTCT+GGG | - | chr5_3:11484819-11484838 | Msa0798700:intron | 30.0% |
| ! | TCTAAATGCATAGCATCTTT+TGG | + | chr5_3:11484958-11484977 | None:intergenic | 30.0% |
| AAGAATGGGTACTTGTTTAA+TGG | - | chr5_3:11485064-11485083 | Msa0798700:intron | 30.0% | |
| AGAATGGGTACTTGTTTAAT+GGG | - | chr5_3:11485065-11485084 | Msa0798700:intron | 30.0% | |
| TGGAACAAAATAATTAGGGA+AGG | - | chr5_3:11485344-11485363 | Msa0798700:intron | 30.0% | |
| TTAATAAAATGTACTCCCTC+CGG | + | chr5_3:11485982-11486001 | None:intergenic | 30.0% | |
| !! | TTATTTGTTTCTACACGCAT+CGG | - | chr5_3:11486040-11486059 | Msa0798700:CDS | 30.0% |
| ACCACAAACTCAGAAAATAA+TGG | + | chr5_3:11486310-11486329 | None:intergenic | 30.0% | |
| ! | TTATTTTCTGAGTTTGTGGT+TGG | - | chr5_3:11486310-11486329 | Msa0798700:CDS | 30.0% |
| ! | TATTTTCTGAGTTTGTGGTT+GGG | - | chr5_3:11486311-11486330 | Msa0798700:CDS | 30.0% |
| GATAGAGGAGAAAGTTAAAA+AGG | - | chr5_3:11486349-11486368 | Msa0798700:CDS | 30.0% | |
| ACAAGAGATGCTAGTGAAAA+TGG | - | chr5_3:11482028-11482047 | Msa0798700:CDS | 35.0% | |
| AGATGCTAGTGAAAATGGTT+TGG | - | chr5_3:11482033-11482052 | Msa0798700:CDS | 35.0% | |
| CATTTCTAATGGTGCAATCA+AGG | - | chr5_3:11482120-11482139 | Msa0798700:CDS | 35.0% | |
| !! | TCTTGCAAGCATTGTTGTTT+CGG | - | chr5_3:11482159-11482178 | Msa0798700:CDS | 35.0% |
| CATAGAAGTTGAAGAGACAA+TGG | + | chr5_3:11482325-11482344 | None:intergenic | 35.0% | |
| ! | AAAAATTTTATGAGCTGGCG+AGG | - | chr5_3:11482517-11482536 | Msa0798700:intron | 35.0% |
| CATGAAGCAATGAACCAATT+TGG | + | chr5_3:11482549-11482568 | None:intergenic | 35.0% | |
| ! | AAGTTGCTATTAATTCTGCC+CGG | - | chr5_3:11482629-11482648 | Msa0798700:intron | 35.0% |
| !!! | GATAAAGATTTTAGAACCCC+GGG | + | chr5_3:11482650-11482669 | None:intergenic | 35.0% |
| !! | GATTTGTTGTATTGCCTATC+CGG | - | chr5_3:11482700-11482719 | Msa0798700:intron | 35.0% |
| ! | AATGCACTTTTATACCGGAT+AGG | + | chr5_3:11482717-11482736 | None:intergenic | 35.0% |
| !! | GGAAATTGGAACTTTTGGTT+TGG | + | chr5_3:11482876-11482895 | None:intergenic | 35.0% |
| TGTTTGTTTCCACATTCGTA+TGG | - | chr5_3:11482929-11482948 | Msa0798700:intron | 35.0% | |
| ! | TCCACTGTGTCAATTTTTAC+AGG | - | chr5_3:11482981-11483000 | Msa0798700:intron | 35.0% |
| TCCTGTAAAAATTGACACAG+TGG | + | chr5_3:11482985-11483004 | None:intergenic | 35.0% | |
| TTTGCTTCTTCCAAAGTGAA+AGG | - | chr5_3:11483052-11483071 | Msa0798700:intron | 35.0% | |
| GAACTACTTTCCTTTCACTT+TGG | + | chr5_3:11483065-11483084 | None:intergenic | 35.0% | |
| CAGGTTAAGCATACCATAAA+AGG | + | chr5_3:11483304-11483323 | None:intergenic | 35.0% | |
| TATAAAAGGGTCCTGCTAAT+GGG | + | chr5_3:11483339-11483358 | None:intergenic | 35.0% | |
| ATATAAAAGGGTCCTGCTAA+TGG | + | chr5_3:11483340-11483359 | None:intergenic | 35.0% | |
| GTACTGTTAGATTTCATCAG+CGG | - | chr5_3:11483812-11483831 | Msa0798700:intron | 35.0% | |
| GACAGAGATAGAATTGTATG+TGG | + | chr5_3:11483880-11483899 | None:intergenic | 35.0% | |
| CAAAAGAACAAGAACTAGTG+AGG | - | chr5_3:11484000-11484019 | Msa0798700:intron | 35.0% | |
| AAATAATCTAACCCCCATGT+GGG | + | chr5_3:11484311-11484330 | None:intergenic | 35.0% | |
| AAAATAATCTAACCCCCATG+TGG | + | chr5_3:11484312-11484331 | None:intergenic | 35.0% | |
| TTTGCAGCAAGAATCTTTGA+CGG | - | chr5_3:11484346-11484365 | Msa0798700:intron | 35.0% | |
| CAAGAATCTTTGACGGAATT+TGG | - | chr5_3:11484353-11484372 | Msa0798700:intron | 35.0% | |
| AATCTTTGACGGAATTTGGT+GGG | - | chr5_3:11484357-11484376 | Msa0798700:intron | 35.0% | |
| GTACTGTGTGATTTAAAGAG+CGG | + | chr5_3:11484466-11484485 | None:intergenic | 35.0% | |
| CCCAACCTCTACATAATATT+AGG | + | chr5_3:11484543-11484562 | None:intergenic | 35.0% | |
| GTTAAGTAATCTAGTAGCAG+AGG | + | chr5_3:11484612-11484631 | None:intergenic | 35.0% | |
| TTTGCTTATAATAGTGACCG+GGG | + | chr5_3:11484775-11484794 | None:intergenic | 35.0% | |
| ! | AGTCAATGTTTCTAACTCTC+TGG | + | chr5_3:11484914-11484933 | None:intergenic | 35.0% |
| !! | CATTGACTGAAATAATGGAC+AGG | - | chr5_3:11484926-11484945 | Msa0798700:intron | 35.0% |
| AATGGCCAAGATTGAAGAAT+GGG | - | chr5_3:11485050-11485069 | Msa0798700:intron | 35.0% | |
| AAGTACCCATTCTTCAATCT+TGG | + | chr5_3:11485058-11485077 | None:intergenic | 35.0% | |
| GTTTGAGAACTGCGTAATTA+TGG | - | chr5_3:11485324-11485343 | Msa0798700:CDS | 35.0% | |
| !! | AGGGAGTATTTGAGACTAAA+TGG | + | chr5_3:11485698-11485717 | None:intergenic | 35.0% |
| TTCTTATAATAAGGACCGGA+GGG | + | chr5_3:11485834-11485853 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr5_3:11485833-11485852 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr5_3:11485833-11485852 | Msa0798700:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr5_3:11485834-11485853 | Msa0798700:intron | 35.0% | |
| AAAGTTTCTTATACTCCCTC+CGG | + | chr5_3:11485852-11485871 | None:intergenic | 35.0% | |
| ! | AAGTTTCTTGCATTTGAGAC+CGG | - | chr5_3:11485960-11485979 | Msa0798700:intron | 35.0% |
| TCTGAACATGTATCTTCTTG+CGG | + | chr5_3:11486152-11486171 | None:intergenic | 35.0% | |
| TCGGTGATTATTGTGATACT+TGG | - | chr5_3:11486272-11486291 | Msa0798700:CDS | 35.0% | |
| ! | GCCATTATTTTCTGAGTTTG+TGG | - | chr5_3:11486306-11486325 | Msa0798700:CDS | 35.0% |
| CTTGGAAATTACAGAGATAG+AGG | - | chr5_3:11486334-11486353 | Msa0798700:CDS | 35.0% | |
| GAGGAGAAAGTTAAAAAGGT+CGG | - | chr5_3:11486353-11486372 | Msa0798700:CDS | 35.0% | |
| AAGTTAAAAAGGTCGGTTGT+TGG | - | chr5_3:11486360-11486379 | Msa0798700:CDS | 35.0% | |
| TTCATGACCATGATCGATGA+TGG | + | chr5_3:11482100-11482119 | None:intergenic | 40.0% | |
| ACAACAATGCTTGCAAGAAC+CGG | + | chr5_3:11482157-11482176 | None:intergenic | 40.0% | |
| AATGCAGAATCAATGTGCGT+AGG | - | chr5_3:11482214-11482233 | Msa0798700:intron | 40.0% | |
| ATGCAGAATCAATGTGCGTA+GGG | - | chr5_3:11482215-11482234 | Msa0798700:intron | 40.0% | |
| ! | TGATGAAGACGAGCTTTTAC+CGG | - | chr5_3:11482258-11482277 | Msa0798700:intron | 40.0% |
| ACAATGAAGTAGATTCGACC+CGG | + | chr5_3:11482280-11482299 | None:intergenic | 40.0% | |
| AGTGCATTTCACTAGTCACT+GGG | + | chr5_3:11482596-11482615 | None:intergenic | 40.0% | |
| TAGTGCATTTCACTAGTCAC+TGG | + | chr5_3:11482597-11482616 | None:intergenic | 40.0% | |
| ! | AGTTGCTATTAATTCTGCCC+GGG | - | chr5_3:11482630-11482649 | Msa0798700:intron | 40.0% |
| ACAACAAATCGAACACAAGC+CGG | + | chr5_3:11482690-11482709 | None:intergenic | 40.0% | |
| GAAGAAGCAAAATGCACAAG+AGG | + | chr5_3:11483043-11483062 | None:intergenic | 40.0% | |
| GTTCTCCCCTTCAAAGAATT+TGG | - | chr5_3:11483081-11483100 | Msa0798700:intron | 40.0% | |
| TCTAGACCTTCAATCAAGTG+CGG | + | chr5_3:11483137-11483156 | None:intergenic | 40.0% | |
| ATTGTCGGAGATTTGCAAGT+AGG | + | chr5_3:11483459-11483478 | None:intergenic | 40.0% | |
| !!! | GTACTTTTTAAGTGCTCCAC+CGG | + | chr5_3:11483796-11483815 | None:intergenic | 40.0% |
| AGTGAGGTTCTCTTCTAGAT+TGG | - | chr5_3:11484016-11484035 | Msa0798700:intron | 40.0% | |
| GTGAGGTTCTCTTCTAGATT+GGG | - | chr5_3:11484017-11484036 | Msa0798700:intron | 40.0% | |
| ! | AATTTTCATCACCCATGGTG+TGG | - | chr5_3:11484218-11484237 | Msa0798700:intron | 40.0% |
| AACAACATTAGCCACACCAT+GGG | + | chr5_3:11484232-11484251 | None:intergenic | 40.0% | |
| AAACAACATTAGCCACACCA+TGG | + | chr5_3:11484233-11484252 | None:intergenic | 40.0% | |
| TAAATTTGAGAGGACCCACA+TGG | - | chr5_3:11484294-11484313 | Msa0798700:intron | 40.0% | |
| AAATTTGAGAGGACCCACAT+GGG | - | chr5_3:11484295-11484314 | Msa0798700:intron | 40.0% | |
| GAATCTTTGACGGAATTTGG+TGG | - | chr5_3:11484356-11484375 | Msa0798700:intron | 40.0% | |
| AGAAAATGCTGGATTGTGTG+TGG | - | chr5_3:11484398-11484417 | Msa0798700:intron | 40.0% | |
| AGTTCAATTAAGTCCCTCAC+AGG | + | chr5_3:11484504-11484523 | None:intergenic | 40.0% | |
| CAAAACGTATATACTCTCCC+CGG | - | chr5_3:11484643-11484662 | Msa0798700:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr5_3:11484776-11484795 | Msa0798700:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr5_3:11484777-11484796 | Msa0798700:intron | 40.0% | |
| ATGGGTCCAATGAAAAGGTT+TGG | + | chr5_3:11484874-11484893 | None:intergenic | 40.0% | |
| CAATGGCCAAGATTGAAGAA+TGG | - | chr5_3:11485049-11485068 | Msa0798700:intron | 40.0% | |
| !! | GGGTACTTGTTTAATGGGTT+TGG | - | chr5_3:11485070-11485089 | Msa0798700:intron | 40.0% |
| !! | ATGGGTTTGGTGTTCAAGTT+TGG | - | chr5_3:11485083-11485102 | Msa0798700:intron | 40.0% |
| !! | TATTTGTTCTGGGAAAGGGA+TGG | + | chr5_3:11485425-11485444 | None:intergenic | 40.0% |
| TTAGTCTCAAATACTCCCTC+CGG | - | chr5_3:11485699-11485718 | Msa0798700:intron | 40.0% | |
| AACAACATCGTCTGTCTGAA+TGG | + | chr5_3:11486022-11486041 | None:intergenic | 40.0% | |
| TGTTCAGAAATTAACGGTGC+TGG | - | chr5_3:11486164-11486183 | Msa0798700:CDS | 40.0% | |
| ! | TGAAGGTGTGATCTTTGTGT+CGG | - | chr5_3:11486253-11486272 | Msa0798700:CDS | 40.0% |
| ! | GGTTGTTGGTGTTTGAAGAA+GGG | - | chr5_3:11486374-11486393 | Msa0798700:CDS | 40.0% |
| TCGAAGACCATCATCGATCA+TGG | - | chr5_3:11482090-11482109 | Msa0798700:CDS | 45.0% | |
| TGCAGAATCAATGTGCGTAG+GGG | - | chr5_3:11482216-11482235 | Msa0798700:intron | 45.0% | |
| TCGTCTTCATCAGAAACTCG+TGG | + | chr5_3:11482250-11482269 | None:intergenic | 45.0% | |
| ! | GATGAAGACGAGCTTTTACC+GGG | - | chr5_3:11482259-11482278 | Msa0798700:intron | 45.0% |
| GTGCATTTCACTAGTCACTG+GGG | + | chr5_3:11482595-11482614 | None:intergenic | 45.0% | |
| ! | GTTGCTATTAATTCTGCCCG+GGG | - | chr5_3:11482631-11482650 | Msa0798700:intron | 45.0% |
| AACAAATCGAACACAAGCCG+GGG | + | chr5_3:11482688-11482707 | None:intergenic | 45.0% | |
| CAACAAATCGAACACAAGCC+GGG | + | chr5_3:11482689-11482708 | None:intergenic | 45.0% | |
| TATCCTTAACCAATGCCCCA+GGG | + | chr5_3:11483187-11483206 | None:intergenic | 45.0% | |
| ATATCCTTAACCAATGCCCC+AGG | + | chr5_3:11483188-11483207 | None:intergenic | 45.0% | |
| ATTGTGTGTGCGTGTACTCA+TGG | - | chr5_3:11483409-11483428 | Msa0798700:intron | 45.0% | |
| CGGAGATTTGCAAGTAGGTA+TGG | + | chr5_3:11483454-11483473 | None:intergenic | 45.0% | |
| AATTTGAGAGGACCCACATG+GGG | - | chr5_3:11484296-11484315 | Msa0798700:intron | 45.0% | |
| ! | TTTGACGGAATTTGGTGGGT+TGG | - | chr5_3:11484361-11484380 | Msa0798700:intron | 45.0% |
| TGACAGGGAAGAGAAAATGC+TGG | - | chr5_3:11484387-11484406 | Msa0798700:intron | 45.0% | |
| TCAATTAAGTCCCTCACAGG+TGG | + | chr5_3:11484501-11484520 | None:intergenic | 45.0% | |
| TGTGCAACATTTACTCCCTC+CGG | + | chr5_3:11484795-11484814 | None:intergenic | 45.0% | |
| CGTTGACCCAGAAAAATGTG+AGG | + | chr5_3:11484828-11484847 | None:intergenic | 45.0% | |
| GGGATATGGGTCCAATGAAA+AGG | + | chr5_3:11484879-11484898 | None:intergenic | 45.0% | |
| ! | TTTCTTGCATTTGAGACCGG+AGG | - | chr5_3:11485963-11485982 | Msa0798700:intron | 45.0% |
| ! | TTCTTGCATTTGAGACCGGA+GGG | - | chr5_3:11485964-11485983 | Msa0798700:intron | 45.0% |
| GCTGGTGAGATCTCTTTACA+AGG | - | chr5_3:11486182-11486201 | Msa0798700:CDS | 45.0% | |
| ! | GACCTTCAGCTTTGTCTTGA+AGG | - | chr5_3:11486236-11486255 | Msa0798700:CDS | 45.0% |
| CACCTTCAAGACAAAGCTGA+AGG | + | chr5_3:11486241-11486260 | None:intergenic | 45.0% | |
| ! | CGGTTGTTGGTGTTTGAAGA+AGG | - | chr5_3:11486373-11486392 | Msa0798700:CDS | 45.0% |
| !!! | TTATTGATTATATAAAATAA+AGG | - | chr5_3:11482767-11482786 | Msa0798700:intron | 5.0% |
| !!! | ATTGAAAATTTTATATAAAA+GGG | + | chr5_3:11483352-11483371 | None:intergenic | 5.0% |
| !!! | AAAGTAATAATTTATTTTTT+TGG | - | chr5_3:11485263-11485282 | Msa0798700:CDS | 5.0% |
| TGGCGAGGCAAGAACCAAAT+TGG | - | chr5_3:11482532-11482551 | Msa0798700:intron | 50.0% | |
| CGTTCAGCACCATACGAATG+TGG | + | chr5_3:11482941-11482960 | None:intergenic | 50.0% | |
| AGTGAGCCGCACTTGATTGA+AGG | - | chr5_3:11483128-11483147 | Msa0798700:intron | 50.0% | |
| AAAATGCTAACCGGTGCCCT+GGG | - | chr5_3:11483168-11483187 | Msa0798700:intron | 50.0% | |
| GGTATGCTTAACCTGTGCTC+CGG | - | chr5_3:11483309-11483328 | Msa0798700:intron | 50.0% | |
| GTATGCTTAACCTGTGCTCC+GGG | - | chr5_3:11483310-11483329 | Msa0798700:intron | 50.0% | |
| TATGCTTAACCTGTGCTCCG+GGG | - | chr5_3:11483311-11483330 | Msa0798700:intron | 50.0% | |
| !! | TATGGGTGGATTCTAGGGTG+AGG | - | chr5_3:11483752-11483771 | Msa0798700:intron | 50.0% |
| !! | ATGGGTGGATTCTAGGGTGA+GGG | - | chr5_3:11483753-11483772 | Msa0798700:intron | 50.0% |
| TTTAAGTGCTCCACCGGTGA+GGG | + | chr5_3:11483790-11483809 | None:intergenic | 50.0% | |
| !! | TTTTAAGTGCTCCACCGGTG+AGG | + | chr5_3:11483791-11483810 | None:intergenic | 50.0% |
| ATTTGAGAGGACCCACATGG+GGG | - | chr5_3:11484297-11484316 | Msa0798700:intron | 50.0% | |
| !! | TTTGGTGGGTTGGAGATGAC+AGG | - | chr5_3:11484371-11484390 | Msa0798700:intron | 50.0% |
| !! | TTGGTGGGTTGGAGATGACA+GGG | - | chr5_3:11484372-11484391 | Msa0798700:intron | 50.0% |
| !! | TTTTAGGTGCTCCACCTGTG+AGG | - | chr5_3:11484487-11484506 | Msa0798700:intron | 50.0% |
| TTTAGGTGCTCCACCTGTGA+GGG | - | chr5_3:11484488-11484507 | Msa0798700:intron | 50.0% | |
| TTGGACCCATATCCCACCTT+TGG | - | chr5_3:11484884-11484903 | Msa0798700:intron | 50.0% | |
| GAGCACCAAAGGTGGGATAT+GGG | + | chr5_3:11484892-11484911 | None:intergenic | 50.0% | |
| !! | CTAACTCTCTGGAGCACCAA+AGG | + | chr5_3:11484903-11484922 | None:intergenic | 50.0% |
| TCTGAGTTTGTGGTTGGGCT+TGG | - | chr5_3:11486316-11486335 | Msa0798700:CDS | 50.0% | |
| GAAAATGCTAACCGGTGCCC+TGG | - | chr5_3:11483167-11483186 | Msa0798700:intron | 55.0% | |
| AAATGCTAACCGGTGCCCTG+GGG | - | chr5_3:11483169-11483188 | Msa0798700:intron | 55.0% | |
| GGACCAACTAAGTCCCTCAC+CGG | - | chr5_3:11483774-11483793 | Msa0798700:intron | 55.0% | |
| ! | GGAGCACCAAAGGTGGGATA+TGG | + | chr5_3:11484893-11484912 | None:intergenic | 55.0% |
| !! | CTCTCTGGAGCACCAAAGGT+GGG | + | chr5_3:11484899-11484918 | None:intergenic | 55.0% |
| !! | ACTCTCTGGAGCACCAAAGG+TGG | + | chr5_3:11484900-11484919 | None:intergenic | 55.0% |
| TAACCAATGCCCCAGGGCAC+CGG | + | chr5_3:11483181-11483200 | None:intergenic | 60.0% | |
| !! | GTGCCCTGGGGCATTGGTTA+AGG | - | chr5_3:11483181-11483200 | Msa0798700:intron | 60.0% |
| CCACCGGTGAGGGACTTAGT+TGG | + | chr5_3:11483780-11483799 | None:intergenic | 60.0% | |
| CCAACTAAGTCCCTCACCGG+TGG | - | chr5_3:11483777-11483796 | Msa0798700:intron | 60.0% | |
| TAACCGGTGCCCTGGGGCAT+TGG | - | chr5_3:11483175-11483194 | Msa0798700:intron | 65.0% | |
| ! | TAATGGGTGCCCCGGAGCAC+AGG | + | chr5_3:11483323-11483342 | None:intergenic | 65.0% |
| ! | GGTCCTGCTAATGGGTGCCC+CGG | + | chr5_3:11483331-11483350 | None:intergenic | 65.0% |
| ! | GCTCCGGGGCACCCATTAGC+AGG | - | chr5_3:11483325-11483344 | Msa0798700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11481965 | 11486400 | 11481965 | ID=Msa0798700;Name=Msa0798700 |
| chr5_3 | mRNA | 11481965 | 11486400 | 11481965 | ID=Msa0798700-mRNA-1;Parent=Msa0798700;Name=Msa0798700-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.66|1|1|3|0|261 |
| chr5_3 | exon | 11485984 | 11486400 | 11485984 | ID=Msa0798700-mRNA-1:exon:4764;Parent=Msa0798700-mRNA-1 |
| chr5_3 | exon | 11485259 | 11485362 | 11485259 | ID=Msa0798700-mRNA-1:exon:4763;Parent=Msa0798700-mRNA-1 |
| chr5_3 | exon | 11481965 | 11482229 | 11481965 | ID=Msa0798700-mRNA-1:exon:4762;Parent=Msa0798700-mRNA-1 |
| chr5_3 | CDS | 11485984 | 11486400 | 11485984 | ID=Msa0798700-mRNA-1:cds;Parent=Msa0798700-mRNA-1 |
| chr5_3 | CDS | 11485259 | 11485362 | 11485259 | ID=Msa0798700-mRNA-1:cds;Parent=Msa0798700-mRNA-1 |
| chr5_3 | CDS | 11481965 | 11482229 | 11481965 | ID=Msa0798700-mRNA-1:cds;Parent=Msa0798700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
