Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703660 | XP_013446785.1 | 92.544 | 228 | 13 | 1 | 1 | 228 | 1 | 224 | 3.28e-149 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703660 | A0A072TTP9 | 92.544 | 228 | 13 | 1 | 1 | 228 | 1 | 224 | 1.57e-149 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0703660 | 0.800959 | 1.128108e-48 | -8.615850e-47 |
| Msa0020390 | Msa0703660 | 0.805808 | 1.116131e-49 | -8.615850e-47 |
| Msa0021210 | Msa0703660 | 0.819131 | 1.364096e-52 | -8.615850e-47 |
| Msa0031180 | Msa0703660 | 0.811254 | 7.676543e-51 | -8.615850e-47 |
| Msa0035150 | Msa0703660 | 0.804163 | 2.464165e-49 | -8.615850e-47 |
| Msa0054820 | Msa0703660 | 0.812878 | 3.395983e-51 | -8.615850e-47 |
| Msa0056450 | Msa0703660 | 0.801652 | 8.140059e-49 | -8.615850e-47 |
| Msa0065650 | Msa0703660 | 0.813343 | 2.685969e-51 | -8.615850e-47 |
| Msa0074750 | Msa0703660 | 0.827326 | 1.664644e-54 | -8.615850e-47 |
| Msa0078480 | Msa0703660 | 0.804229 | 2.388192e-49 | -8.615850e-47 |
| Msa0081650 | Msa0703660 | 0.810239 | 1.272130e-50 | -8.615850e-47 |
| Msa0082440 | Msa0703660 | 0.805984 | 1.025279e-49 | -8.615850e-47 |
| Msa0090550 | Msa0703660 | 0.805591 | 1.239724e-49 | -8.615850e-47 |
| Msa0092440 | Msa0703660 | 0.802178 | 6.346953e-49 | -8.615850e-47 |
| Msa0100160 | Msa0703660 | 0.807694 | 4.460270e-50 | -8.615850e-47 |
| Msa0111080 | Msa0703660 | 0.832990 | 6.896684e-56 | -8.615850e-47 |
| Msa0114430 | Msa0703660 | 0.800340 | 1.509126e-48 | -8.615850e-47 |
| Msa0118540 | Msa0703660 | 0.836636 | 8.331234e-57 | -8.615850e-47 |
| Msa0609220 | Msa0703660 | 0.806332 | 8.661904e-50 | -8.615850e-47 |
| Msa0614900 | Msa0703660 | 0.827275 | 1.711899e-54 | -8.615850e-47 |
| Msa0615220 | Msa0703660 | 0.815900 | 7.294431e-52 | -8.615850e-47 |
| Msa0626850 | Msa0703660 | 0.829640 | 4.596549e-55 | -8.615850e-47 |
| Msa0638350 | Msa0703660 | 0.819839 | 9.406850e-53 | -8.615850e-47 |
| Msa0638360 | Msa0703660 | 0.840791 | 7.027082e-58 | -8.615850e-47 |
| Msa0640940 | Msa0703660 | 0.828626 | 8.097280e-55 | -8.615850e-47 |
| Msa0641730 | Msa0703660 | 0.812687 | 3.739493e-51 | -8.615850e-47 |
| Msa0659210 | Msa0703660 | 0.807761 | 4.316160e-50 | -8.615850e-47 |
| Msa0661320 | Msa0703660 | 0.812222 | 4.724766e-51 | -8.615850e-47 |
| Msa0664970 | Msa0703660 | 0.804795 | 1.819543e-49 | -8.615850e-47 |
| Msa0672480 | Msa0703660 | 0.808913 | 2.451081e-50 | -8.615850e-47 |
| Msa0679360 | Msa0703660 | 0.819467 | 1.143943e-52 | -8.615850e-47 |
| Msa0696850 | Msa0703660 | 0.828751 | 7.553476e-55 | -8.615850e-47 |
| Msa0696860 | Msa0703660 | 0.806714 | 7.194062e-50 | -8.615850e-47 |
| Msa0697720 | Msa0703660 | 0.802824 | 4.671306e-49 | -8.615850e-47 |
| Msa0703660 | Msa0705390 | 0.820591 | 6.326970e-53 | -8.615850e-47 |
| Msa0703660 | Msa0705990 | 0.802585 | 5.231519e-49 | -8.615850e-47 |
| Msa0703660 | Msa0709120 | 0.800743 | 1.248669e-48 | -8.615850e-47 |
| Msa0703660 | Msa0743530 | 0.811864 | 5.655476e-51 | -8.615850e-47 |
| Msa0703660 | Msa0746170 | 0.804984 | 1.661190e-49 | -8.615850e-47 |
| Msa0703660 | Msa0748070 | 0.802475 | 5.511418e-49 | -8.615850e-47 |
| Msa0703660 | Msa0749440 | 0.823720 | 1.189616e-53 | -8.615850e-47 |
| Msa0703660 | Msa0750850 | 0.809420 | 1.909486e-50 | -8.615850e-47 |
| Msa0703660 | Msa0751850 | 0.808716 | 2.701815e-50 | -8.615850e-47 |
| Msa0703660 | Msa0756380 | 0.822260 | 2.605799e-53 | -8.615850e-47 |
| Msa0703660 | Msa0763890 | 0.817735 | 2.826630e-52 | -8.615850e-47 |
| Msa0703660 | Msa0763920 | 0.832592 | 8.657412e-56 | -8.615850e-47 |
| Msa0703660 | Msa0789560 | 0.821386 | 4.149975e-53 | -8.615850e-47 |
| Msa0703660 | Msa0798700 | 0.809433 | 1.896520e-50 | -8.615850e-47 |
| Msa0703660 | Msa0832090 | 0.821206 | 4.566451e-53 | -8.615850e-47 |
| Msa0703660 | Msa0844110 | 0.823437 | 1.386176e-53 | -8.615850e-47 |
| Msa0703660 | Msa0861470 | 0.808167 | 3.537807e-50 | -8.615850e-47 |
| Msa0703660 | Msa0861570 | 0.801743 | 7.798167e-49 | -8.615850e-47 |
| Msa0703660 | Msa0868160 | 0.810344 | 1.207665e-50 | -8.615850e-47 |
| Msa0703660 | Msa0877710 | 0.812069 | 5.104416e-51 | -8.615850e-47 |
| Msa0703660 | Msa0880810 | 0.805180 | 1.512044e-49 | -8.615850e-47 |
| Msa0703660 | Msa0892570 | 0.810769 | 9.774168e-51 | -8.615850e-47 |
| Msa0703660 | Msa0903780 | 0.815321 | 9.813314e-52 | -8.615850e-47 |
| Msa0703660 | Msa0921420 | 0.808658 | 2.778989e-50 | -8.615850e-47 |
| Msa0703660 | Msa0944870 | 0.805146 | 1.536886e-49 | -8.615850e-47 |
| Msa0703660 | Msa0970990 | 0.827898 | 1.213282e-54 | -8.615850e-47 |
| Msa0703660 | Msa0992580 | 0.802766 | 4.801967e-49 | -8.615850e-47 |
| Msa0703660 | Msa0992600 | 0.824446 | 8.037953e-54 | -8.615850e-47 |
| Msa0703660 | Msa0994370 | 0.801416 | 9.095806e-49 | -8.615850e-47 |
| Msa0703660 | Msa1032770 | 0.805299 | 1.427818e-49 | -8.615850e-47 |
| Msa0703660 | Msa1034280 | 0.811857 | 5.676026e-51 | -8.615850e-47 |
| Msa0703660 | Msa1036740 | 0.811433 | 7.019145e-51 | -8.615850e-47 |
| Msa0703660 | Msa1042660 | 0.826547 | 2.554904e-54 | -8.615850e-47 |
| Msa0703660 | Msa1063420 | 0.805606 | 1.230895e-49 | -8.615850e-47 |
| Msa0703660 | Msa1071320 | 0.801580 | 8.421189e-49 | -8.615850e-47 |
| Msa0703660 | Msa1072900 | 0.828415 | 9.103624e-55 | -8.615850e-47 |
| Msa0703660 | Msa1121110 | 0.818156 | 2.270310e-52 | -8.615850e-47 |
| Msa0703660 | Msa1127430 | 0.814451 | 1.530143e-51 | -8.615850e-47 |
| Msa0703660 | Msa1137830 | 0.811856 | 5.677562e-51 | -8.615850e-47 |
| Msa0703660 | Msa1163870 | 0.819929 | 8.973604e-53 | -8.615850e-47 |
| Msa0703660 | Msa1177780 | 0.804918 | 1.715522e-49 | -8.615850e-47 |
| Msa0703660 | Msa1201640 | 0.805027 | 1.627235e-49 | -8.615850e-47 |
| Msa0703660 | Msa1205480 | 0.818473 | 1.924830e-52 | -8.615850e-47 |
| Msa0703660 | Msa1205590 | 0.813629 | 2.323653e-51 | -8.615850e-47 |
| Msa0703660 | Msa1209190 | 0.802122 | 6.516028e-49 | -8.615850e-47 |
| Msa0703660 | Msa1211340 | 0.823608 | 1.263835e-53 | -8.615850e-47 |
| Msa0703660 | Msa1218580 | 0.803639 | 3.166307e-49 | -8.615850e-47 |
| Msa0703660 | Msa1250110 | 0.823022 | 1.732684e-53 | -8.615850e-47 |
| Msa0703660 | Msa1250730 | 0.830354 | 3.078930e-55 | -8.615850e-47 |
| Msa0703660 | Msa1254620 | 0.801392 | 9.202186e-49 | -8.615850e-47 |
| Msa0703660 | Msa1258370 | 0.800207 | 1.605765e-48 | -8.615850e-47 |
| Msa0703660 | Msa1259640 | 0.826362 | 2.828556e-54 | -8.615850e-47 |
| Msa0703660 | Msa1270660 | 0.808877 | 2.495063e-50 | -8.615850e-47 |
| Msa0703660 | Msa1286570 | 0.807445 | 5.038392e-50 | -8.615850e-47 |
| Msa0703660 | Msa1296300 | 0.814546 | 1.458277e-51 | -8.615850e-47 |
| Msa0703660 | Msa1297530 | 0.835920 | 1.267201e-56 | -8.615850e-47 |
| Msa0703660 | Msa1305350 | 0.804614 | 1.985559e-49 | -8.615850e-47 |
| Msa0703660 | Msa1329790 | 0.819454 | 1.151545e-52 | -8.615850e-47 |
| Msa0703660 | Msa1330180 | 0.810186 | 1.306641e-50 | -8.615850e-47 |
| Msa0703660 | Msa1333420 | 0.802327 | 5.914413e-49 | -8.615850e-47 |
| Msa0703660 | Msa1336040 | 0.822740 | 2.014863e-53 | -8.615850e-47 |
| Msa0703660 | Msa1346350 | 0.803212 | 3.882540e-49 | -8.615850e-47 |
| Msa0703660 | Msa1355890 | 0.807182 | 5.728542e-50 | -8.615850e-47 |
| Msa0703660 | Msa1359560 | 0.801122 | 1.045055e-48 | -8.615850e-47 |
| Msa0703660 | Msa1369690 | 0.802903 | 4.498040e-49 | -8.615850e-47 |
| Msa0703660 | Msa1370590 | 0.800251 | 1.572891e-48 | -8.615850e-47 |
| Msa0703660 | Msa1371940 | 0.823568 | 1.291625e-53 | -8.615850e-47 |
| Msa0703660 | Msa1372290 | 0.820583 | 6.352342e-53 | -8.615850e-47 |
| Msa0703660 | Msa1377800 | 0.802564 | 5.285188e-49 | -8.615850e-47 |
| Msa0703660 | Msa1381650 | 0.800721 | 1.262061e-48 | -8.615850e-47 |
| Msa0703660 | Msa1390680 | 0.806298 | 8.804113e-50 | -8.615850e-47 |
| Msa0703660 | Msa1392890 | 0.805521 | 1.282599e-49 | -8.615850e-47 |
| Msa0703660 | Msa1394310 | 0.801158 | 1.027483e-48 | -8.615850e-47 |
| Msa0703660 | Msa1396940 | 0.807391 | 5.171393e-50 | -8.615850e-47 |
| Msa0703660 | Msa1401460 | 0.823461 | 1.368406e-53 | -8.615850e-47 |
| Msa0703660 | Msa1410690 | 0.804062 | 2.586530e-49 | -8.615850e-47 |
| Msa0703660 | Msa1418850 | 0.804651 | 1.949782e-49 | -8.615850e-47 |
| Msa0703660 | Msa1426910 | 0.841832 | 3.740811e-58 | -8.615850e-47 |
| Msa0703660 | Msa1428780 | 0.811596 | 6.469499e-51 | -8.615850e-47 |
| Msa0703660 | Msa1434040 | 0.840717 | 7.349893e-58 | -8.615850e-47 |
| Msa0703660 | Msa1436600 | 0.800831 | 1.198477e-48 | -8.615850e-47 |
| Msa0703660 | Msa1439710 | 0.811142 | 8.118608e-51 | -8.615850e-47 |
| Msa0703660 | Msa1444120 | 0.811437 | 7.005874e-51 | -8.615850e-47 |
| Msa0703660 | Msa1447890 | 0.828659 | 7.950826e-55 | -8.615850e-47 |
| Msa0703660 | Msa1448630 | 0.802655 | 5.062066e-49 | -8.615850e-47 |
| Msa0703660 | Msa1450720 | 0.807819 | 4.195877e-50 | -8.615850e-47 |
| Msa0703660 | Msa1454960 | 0.828505 | 8.662552e-55 | -8.615850e-47 |
| Msa0703660 | Msa1456230 | 0.802994 | 4.308234e-49 | -8.615850e-47 |
| Msa0703660 | Msa1461710 | 0.809578 | 1.766018e-50 | -8.615850e-47 |
| Msa0703660 | Msa1462360 | 0.810605 | 1.060619e-50 | -8.615850e-47 |
| Msa0130720 | Msa0703660 | 0.823499 | 1.340602e-53 | -8.615850e-47 |
| Msa0139670 | Msa0703660 | 0.802837 | 4.640585e-49 | -8.615850e-47 |
| Msa0142500 | Msa0703660 | 0.818051 | 2.398571e-52 | -8.615850e-47 |
| Msa0152560 | Msa0703660 | 0.809132 | 2.200543e-50 | -8.615850e-47 |
| Msa0154920 | Msa0703660 | 0.821141 | 4.727996e-53 | -8.615850e-47 |
| Msa0160670 | Msa0703660 | 0.809125 | 2.208665e-50 | -8.615850e-47 |
| Msa0183870 | Msa0703660 | 0.814145 | 1.788380e-51 | -8.615850e-47 |
| Msa0223330 | Msa0703660 | 0.820901 | 5.368645e-53 | -8.615850e-47 |
| Msa0225670 | Msa0703660 | 0.807667 | 4.518434e-50 | -8.615850e-47 |
| Msa0232340 | Msa0703660 | 0.815864 | 7.429176e-52 | -8.615850e-47 |
| Msa0371950 | Msa0703660 | 0.804164 | 2.462975e-49 | -8.615850e-47 |
| Msa0382260 | Msa0703660 | 0.804624 | 1.975413e-49 | -8.615850e-47 |
| Msa0382370 | Msa0703660 | 0.851714 | 7.413527e-61 | -8.615850e-47 |
| Msa0387050 | Msa0703660 | 0.830876 | 2.294310e-55 | -8.615850e-47 |
| Msa0387370 | Msa0703660 | 0.829152 | 6.040287e-55 | -8.615850e-47 |
| Msa0388650 | Msa0703660 | 0.807142 | 5.840992e-50 | -8.615850e-47 |
| Msa0395980 | Msa0703660 | 0.821880 | 3.191136e-53 | -8.615850e-47 |
| Msa0398200 | Msa0703660 | 0.809219 | 2.108302e-50 | -8.615850e-47 |
| Msa0403770 | Msa0703660 | 0.810294 | 1.238319e-50 | -8.615850e-47 |
| Msa0410870 | Msa0703660 | 0.812593 | 3.920713e-51 | -8.615850e-47 |
| Msa0432160 | Msa0703660 | 0.859696 | 3.458709e-63 | -8.615850e-47 |
| Msa0450400 | Msa0703660 | -0.807621 | 4.622744e-50 | -8.615850e-47 |
| Msa0476680 | Msa0703660 | 0.861205 | 1.208215e-63 | -8.615850e-47 |
| Msa0241140 | Msa0703660 | 0.803824 | 2.899143e-49 | -8.615850e-47 |
| Msa0244970 | Msa0703660 | 0.806043 | 9.964129e-50 | -8.615850e-47 |
| Msa0271790 | Msa0703660 | 0.825459 | 4.635069e-54 | -8.615850e-47 |
| Msa0296790 | Msa0703660 | 0.800783 | 1.225932e-48 | -8.615850e-47 |
| Msa0304100 | Msa0703660 | 0.816067 | 6.692852e-52 | -8.615850e-47 |
| Msa0310430 | Msa0703660 | 0.821248 | 4.466436e-53 | -8.615850e-47 |
| Msa0311720 | Msa0703660 | 0.802652 | 5.068137e-49 | -8.615850e-47 |
| Msa0317970 | Msa0703660 | 0.802361 | 5.819871e-49 | -8.615850e-47 |
| Msa0319290 | Msa0703660 | 0.819869 | 9.258137e-53 | -8.615850e-47 |
| Msa0320430 | Msa0703660 | 0.815578 | 8.605125e-52 | -8.615850e-47 |
| Msa0321690 | Msa0703660 | 0.807395 | 5.161946e-50 | -8.615850e-47 |
| Msa0330310 | Msa0703660 | 0.800738 | 1.251632e-48 | -8.615850e-47 |
| Msa0336300 | Msa0703660 | 0.806132 | 9.540903e-50 | -8.615850e-47 |
| Msa0340690 | Msa0703660 | 0.805766 | 1.138965e-49 | -8.615850e-47 |
| Msa0340710 | Msa0703660 | 0.808100 | 3.655682e-50 | -8.615850e-47 |
| Msa0347750 | Msa0703660 | 0.813759 | 2.175546e-51 | -8.615850e-47 |
| Msa0358400 | Msa0703660 | 0.808598 | 2.862318e-50 | -8.615850e-47 |
| Msa0482940 | Msa0703660 | 0.802233 | 6.182214e-49 | -8.615850e-47 |
| Msa0483740 | Msa0703660 | 0.849717 | 2.702252e-60 | -8.615850e-47 |
| Msa0485680 | Msa0703660 | 0.807504 | 4.893900e-50 | -8.615850e-47 |
| Msa0491000 | Msa0703660 | 0.825232 | 5.245470e-54 | -8.615850e-47 |
| Msa0510290 | Msa0703660 | 0.821633 | 3.640307e-53 | -8.615850e-47 |
| Msa0518960 | Msa0703660 | 0.803070 | 4.153773e-49 | -8.615850e-47 |
| Msa0521010 | Msa0703660 | 0.863826 | 1.886142e-64 | -8.615850e-47 |
| Msa0534410 | Msa0703660 | 0.802110 | 6.552466e-49 | -8.615850e-47 |
| Msa0549890 | Msa0703660 | 0.809852 | 1.541715e-50 | -8.615850e-47 |
| Msa0566350 | Msa0703660 | 0.801766 | 7.710337e-49 | -8.615850e-47 |
| Msa0566750 | Msa0703660 | 0.809203 | 2.125434e-50 | -8.615850e-47 |
| Msa0567240 | Msa0703660 | 0.897959 | 8.476864e-77 | -8.615850e-47 |
| Msa0587030 | Msa0703660 | 0.817751 | 2.802650e-52 | -8.615850e-47 |
| Msa0594200 | Msa0703660 | 0.804673 | 1.929502e-49 | -8.615850e-47 |
| Msa0600450 | Msa0703660 | 0.816764 | 4.674866e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703660 | MtrunA17_Chr8g0382051 | 92.544 | 228 | 13 | 1 | 1 | 228 | 1 | 224 | 3.01e-153 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703660 | AT3G57360.1 | 48.469 | 196 | 92 | 4 | 34 | 227 | 21 | 209 | 5.67e-58 | 184 |
| Msa0703660 | AT3G02370.1 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 2.29e-46 | 151 |
| Msa0703660 | AT3G02370.4 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 1.11e-45 | 151 |
| Msa0703660 | AT3G02370.2 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 1.11e-45 | 151 |
| Msa0703660 | AT3G02370.3 | 44.848 | 165 | 85 | 2 | 64 | 227 | 1 | 160 | 1.11e-45 | 151 |
Find 53 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCTCTCGGCTACATAAT+TGG | 0.212462 | 4_4:-75663716 | Msa0703660:CDS |
| CTCTTCATTCCATCTGGCTT+TGG | 0.237765 | 4_4:+75664239 | None:intergenic |
| GACAAGCACAGCAGAAAATT+TGG | 0.239630 | 4_4:+75663476 | None:intergenic |
| TTAACTTGGCAGGTATCTTA+TGG | 0.241091 | 4_4:-75663864 | Msa0703660:intron |
| AACCCTTGTTCTTGAATATC+AGG | 0.246191 | 4_4:-75665100 | Msa0703660:intron |
| GAAATGTACGAAAAGGTTTC+TGG | 0.246659 | 4_4:-75663788 | Msa0703660:CDS |
| CTTTCCATAAGTAAGTTATT+TGG | 0.268545 | 4_4:-75663581 | Msa0703660:CDS |
| CTTTGCCCAAATCGCAATTC+AGG | 0.274999 | 4_4:-75664861 | Msa0703660:intron |
| CTCACCAAATAACTTACTTA+TGG | 0.296788 | 4_4:+75663577 | None:intergenic |
| TTCAAAGTTACTCTTGTTCC+TGG | 0.313127 | 4_4:-75665153 | Msa0703660:five_prime_UTR |
| TTTGACCTGAATTGCGATTT+GGG | 0.324555 | 4_4:+75664856 | None:intergenic |
| TCCCATCTCTTCATTCCATC+TGG | 0.337819 | 4_4:+75664233 | None:intergenic |
| GTTCTATCGCCGCCGTAGTT+TGG | 0.372048 | 4_4:+75665179 | None:intergenic |
| GGAAGATAAATATCAAAATC+TGG | 0.393325 | 4_4:+75663533 | None:intergenic |
| ACTTATGGAAAGCTCGACTT+TGG | 0.418825 | 4_4:+75663592 | None:intergenic |
| AGTCTCTCGGCTACATAATT+GGG | 0.429657 | 4_4:-75663715 | Msa0703660:CDS |
| AGCAGAAAATTTGGATCACC+TGG | 0.456168 | 4_4:+75663485 | None:intergenic |
| TTCGCTGTCTACGAGATGTA+AGG | 0.463920 | 4_4:+75663832 | None:intergenic |
| CAGGAAGACCGGATGTTGTT+GGG | 0.466673 | 4_4:-75663765 | Msa0703660:CDS |
| GGAACAAGAGTAACTTTGAA+AGG | 0.466970 | 4_4:+75665156 | None:intergenic |
| GGGAGCTGTTCGAGGCCTAC+AGG | 0.479326 | 4_4:-75663745 | Msa0703660:CDS |
| GAACAGCTCCCAACAACATC+CGG | 0.481581 | 4_4:+75663757 | None:intergenic |
| ATGTTGTTGGGAGCTGTTCG+AGG | 0.483585 | 4_4:-75663753 | Msa0703660:CDS |
| GCAGAGGTTATTGAGAAGAA+TGG | 0.485595 | 4_4:-75664207 | Msa0703660:CDS |
| GCAGGAAGACCGGATGTTGT+TGG | 0.493458 | 4_4:-75663766 | Msa0703660:CDS |
| TATAATAGAAATGTACGAAA+AGG | 0.493873 | 4_4:-75663795 | Msa0703660:CDS |
| AGCCAGATGGAATGAAGAGA+TGG | 0.498558 | 4_4:-75664235 | Msa0703660:CDS |
| AAGGTTTCTGGCAGGAAGAC+CGG | 0.499823 | 4_4:-75663776 | Msa0703660:CDS |
| TTGGGCGGCATAATGTTGCT+TGG | 0.506016 | 4_4:-75663697 | Msa0703660:CDS |
| GAACAAGAGTAACTTTGAAA+GGG | 0.507470 | 4_4:+75665157 | None:intergenic |
| TGAAGAGATGGGAATGGCAG+AGG | 0.522087 | 4_4:-75664223 | Msa0703660:CDS |
| ATTAATGGAAGGAAACAAGT+GGG | 0.544553 | 4_4:-75664992 | Msa0703660:exon |
| AGGTTCAGAAAATCTTCTCC+AGG | 0.564329 | 4_4:-75663503 | Msa0703660:CDS |
| ATGGAATGAAGAGATGGGAA+TGG | 0.574705 | 4_4:-75664229 | Msa0703660:CDS |
| GCCAGATGGAATGAAGAGAT+GGG | 0.580713 | 4_4:-75664234 | Msa0703660:CDS |
| AAGCAAACAAATAGTAGACA+TGG | 0.583081 | 4_4:-75663618 | Msa0703660:CDS |
| ACGTCAAATCCAAAGCCAGA+TGG | 0.589896 | 4_4:-75664248 | Msa0703660:CDS |
| ATATTTATCTTCCAGACAGT+AGG | 0.589908 | 4_4:-75663523 | Msa0703660:CDS |
| CTCTCGGCTACATAATTGGG+CGG | 0.591627 | 4_4:-75663712 | Msa0703660:CDS |
| GGCAGGTATCTTATGGAACT+AGG | 0.591792 | 4_4:-75663857 | Msa0703660:intron |
| TACAGGCACCTCAAGTCTCT+CGG | 0.595258 | 4_4:-75663728 | Msa0703660:CDS |
| GATTAATGGAAGGAAACAAG+TGG | 0.610317 | 4_4:-75664993 | Msa0703660:exon |
| TGTACGAAAAGGTTTCTGGC+AGG | 0.610565 | 4_4:-75663784 | Msa0703660:CDS |
| AAGAATGAGATGTGAAGCGA+AGG | 0.634517 | 4_4:+75664881 | None:intergenic |
| CAAGATTTATACTTCAATCG+AGG | 0.638560 | 4_4:-75664148 | Msa0703660:CDS |
| GAACCTGATATTCAAGAACA+AGG | 0.638915 | 4_4:+75665097 | None:intergenic |
| TGTCTGAGATAGAGAAAACC+AGG | 0.643310 | 4_4:+75665135 | None:intergenic |
| AGCAAACAAATAGTAGACAT+GGG | 0.646880 | 4_4:-75663617 | Msa0703660:CDS |
| GAGAGACTTGAGGTGCCTGT+AGG | 0.647949 | 4_4:+75663730 | None:intergenic |
| AACCTGATATTCAAGAACAA+GGG | 0.651956 | 4_4:+75665098 | None:intergenic |
| TTATGTAGCCGAGAGACTTG+AGG | 0.655821 | 4_4:+75663720 | None:intergenic |
| TTAATGGAAGGAAACAAGTG+GGG | 0.680860 | 4_4:-75664991 | Msa0703660:CDS |
| TCTACTGGAATAGTTCGTAG+TGG | 0.695795 | 4_4:-75664171 | Msa0703660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAAATATATATTTTCTA+TGG | + | chr4_4:75664057-75664076 | None:intergenic | 10.0% |
| !! | ATATTATTTATAGAAAACTA+TGG | + | chr4_4:75664647-75664666 | None:intergenic | 10.0% |
| !!! | CAATAAATATATATTTTCTA+TGG | + | chr4_4:75664057-75664076 | None:intergenic | 10.0% |
| !! | ATATTATTTATAGAAAACTA+TGG | + | chr4_4:75664647-75664666 | None:intergenic | 10.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | + | chr4_4:75663848-75663867 | None:intergenic | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | - | chr4_4:75664171-75664190 | Msa0703660:CDS | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | + | chr4_4:75664573-75664592 | None:intergenic | 15.0% |
| !!! | TTAAGTTGTTTATAGAAAAA+TGG | + | chr4_4:75663848-75663867 | None:intergenic | 15.0% |
| !! | AGTAAATGATTGTTAATAAA+CGG | - | chr4_4:75664171-75664190 | Msa0703660:CDS | 15.0% |
| !! | ATAAGATATATACAAAAACA+TGG | + | chr4_4:75664573-75664592 | None:intergenic | 15.0% |
| !! | TCAAATACTACAAATTCAAT+CGG | + | chr4_4:75663996-75664015 | None:intergenic | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | - | chr4_4:75664172-75664191 | Msa0703660:CDS | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | + | chr4_4:75664261-75664280 | None:intergenic | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACT+TGG | - | chr4_4:75664798-75664817 | Msa0703660:intron | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | - | chr4_4:75664881-75664900 | Msa0703660:CDS | 20.0% |
| !! | TCAAATACTACAAATTCAAT+CGG | + | chr4_4:75663996-75664015 | None:intergenic | 20.0% |
| !! | GTAAATGATTGTTAATAAAC+GGG | - | chr4_4:75664172-75664191 | Msa0703660:CDS | 20.0% |
| !!! | CATTAATTTATCATTTGTTG+TGG | + | chr4_4:75664261-75664280 | None:intergenic | 20.0% |
| !!! | TGTTTGTGAAAATTTTAACT+TGG | - | chr4_4:75664798-75664817 | Msa0703660:intron | 20.0% |
| !! | TATAATAGAAATGTACGAAA+AGG | - | chr4_4:75664881-75664900 | Msa0703660:CDS | 20.0% |
| ! | ACAAAAAATTGTCCAAACTA+CGG | - | chr4_4:75663485-75663504 | Msa0703660:CDS | 25.0% |
| ! | TAGAGATATTAGCAAATAAG+CGG | + | chr4_4:75663642-75663661 | None:intergenic | 25.0% |
| !! | GCTAATATCTCTATCAATTT+TGG | - | chr4_4:75663649-75663668 | Msa0703660:CDS | 25.0% |
| ! | AATAGCTGATAAACTAACTT+AGG | - | chr4_4:75663925-75663944 | Msa0703660:intron | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | + | chr4_4:75664230-75664249 | None:intergenic | 25.0% |
| ! | TAAATTAATGTCAGCCTATA+TGG | - | chr4_4:75664271-75664290 | Msa0703660:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | + | chr4_4:75664338-75664357 | None:intergenic | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | - | chr4_4:75664404-75664423 | Msa0703660:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | - | chr4_4:75664595-75664614 | Msa0703660:intron | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | - | chr4_4:75664599-75664618 | Msa0703660:intron | 25.0% |
| !!! | GATTCAATGATGCATTTTTT+TGG | - | chr4_4:75664756-75664775 | Msa0703660:intron | 25.0% |
| ! | CTTTCCATAAGTAAGTTATT+TGG | - | chr4_4:75665095-75665114 | Msa0703660:intron | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | + | chr4_4:75665146-75665165 | None:intergenic | 25.0% |
| ! | ACAAAAAATTGTCCAAACTA+CGG | - | chr4_4:75663485-75663504 | Msa0703660:CDS | 25.0% |
| ! | TAGAGATATTAGCAAATAAG+CGG | + | chr4_4:75663642-75663661 | None:intergenic | 25.0% |
| !! | GCTAATATCTCTATCAATTT+TGG | - | chr4_4:75663649-75663668 | Msa0703660:CDS | 25.0% |
| ! | AATAGCTGATAAACTAACTT+AGG | - | chr4_4:75663925-75663944 | Msa0703660:intron | 25.0% |
| ! | TATACATATATGAGTCTGTT+TGG | + | chr4_4:75664230-75664249 | None:intergenic | 25.0% |
| ! | TAAATTAATGTCAGCCTATA+TGG | - | chr4_4:75664271-75664290 | Msa0703660:intron | 25.0% |
| ! | CAGTAGTAAGTAACTATTTA+CGG | + | chr4_4:75664338-75664357 | None:intergenic | 25.0% |
| !!! | TTTTTTACATTTCATTCACC+AGG | - | chr4_4:75664404-75664423 | Msa0703660:intron | 25.0% |
| !! | TCTGACATTTAGATTTTAGA+AGG | - | chr4_4:75664595-75664614 | Msa0703660:intron | 25.0% |
| !!! | ACATTTAGATTTTAGAAGGA+GGG | - | chr4_4:75664599-75664618 | Msa0703660:intron | 25.0% |
| !!! | GATTCAATGATGCATTTTTT+TGG | - | chr4_4:75664756-75664775 | Msa0703660:intron | 25.0% |
| ! | CTTTCCATAAGTAAGTTATT+TGG | - | chr4_4:75665095-75665114 | Msa0703660:intron | 25.0% |
| ! | GGAAGATAAATATCAAAATC+TGG | + | chr4_4:75665146-75665165 | None:intergenic | 25.0% |
| ! | GAACAAGAGTAACTTTGAAA+GGG | + | chr4_4:75663522-75663541 | None:intergenic | 30.0% |
| AACCTGATATTCAAGAACAA+GGG | + | chr4_4:75663581-75663600 | None:intergenic | 30.0% | |
| ATTAATGGAAGGAAACAAGT+GGG | - | chr4_4:75663684-75663703 | Msa0703660:CDS | 30.0% | |
| ! | AGAGGCATAAATATGATAGA+GGG | + | chr4_4:75663894-75663913 | None:intergenic | 30.0% |
| ATCATATTTATGCCTCTGTT+TGG | - | chr4_4:75663897-75663916 | Msa0703660:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | + | chr4_4:75664377-75664396 | None:intergenic | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | + | chr4_4:75664378-75664397 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | - | chr4_4:75664479-75664498 | Msa0703660:intron | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | - | chr4_4:75664480-75664499 | Msa0703660:intron | 30.0% | |
| CAAGATTTATACTTCAATCG+AGG | - | chr4_4:75664528-75664547 | Msa0703660:intron | 30.0% | |
| !! | GACATTTAGATTTTAGAAGG+AGG | - | chr4_4:75664598-75664617 | Msa0703660:intron | 30.0% |
| ! | TATAGAAAACTATGGCCTTA+AGG | + | chr4_4:75664639-75664658 | None:intergenic | 30.0% |
| AGACGATAAATAAGCCAAAT+AGG | - | chr4_4:75664734-75664753 | Msa0703660:intron | 30.0% | |
| ATGCATCATTGAATCCTATT+TGG | + | chr4_4:75664751-75664770 | None:intergenic | 30.0% | |
| !!! | AATGATGCATTTTTTTGGCT+AGG | - | chr4_4:75664761-75664780 | Msa0703660:intron | 30.0% |
| !!! | TGTGAAAATTTTAACTTGGC+AGG | - | chr4_4:75664802-75664821 | Msa0703660:intron | 30.0% |
| TAGAAGTTCTCAAAAACAAG+TGG | - | chr4_4:75665016-75665035 | Msa0703660:intron | 30.0% | |
| AAGCAAACAAATAGTAGACA+TGG | - | chr4_4:75665058-75665077 | Msa0703660:intron | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | - | chr4_4:75665059-75665078 | Msa0703660:intron | 30.0% | |
| CTCACCAAATAACTTACTTA+TGG | + | chr4_4:75665102-75665121 | None:intergenic | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | - | chr4_4:75665153-75665172 | Msa0703660:five_prime_UTR | 30.0% | |
| ! | GAACAAGAGTAACTTTGAAA+GGG | + | chr4_4:75663522-75663541 | None:intergenic | 30.0% |
| AACCTGATATTCAAGAACAA+GGG | + | chr4_4:75663581-75663600 | None:intergenic | 30.0% | |
| ATTAATGGAAGGAAACAAGT+GGG | - | chr4_4:75663684-75663703 | Msa0703660:CDS | 30.0% | |
| ! | AGAGGCATAAATATGATAGA+GGG | + | chr4_4:75663894-75663913 | None:intergenic | 30.0% |
| ATCATATTTATGCCTCTGTT+TGG | - | chr4_4:75663897-75663916 | Msa0703660:intron | 30.0% | |
| TTCAAATCAACACTAAAGCA+GGG | + | chr4_4:75664377-75664396 | None:intergenic | 30.0% | |
| TTTCAAATCAACACTAAAGC+AGG | + | chr4_4:75664378-75664397 | None:intergenic | 30.0% | |
| TTGAGAAGAATGGAAAAATG+TGG | - | chr4_4:75664479-75664498 | Msa0703660:intron | 30.0% | |
| TGAGAAGAATGGAAAAATGT+GGG | - | chr4_4:75664480-75664499 | Msa0703660:intron | 30.0% | |
| CAAGATTTATACTTCAATCG+AGG | - | chr4_4:75664528-75664547 | Msa0703660:intron | 30.0% | |
| !! | GACATTTAGATTTTAGAAGG+AGG | - | chr4_4:75664598-75664617 | Msa0703660:intron | 30.0% |
| ! | TATAGAAAACTATGGCCTTA+AGG | + | chr4_4:75664639-75664658 | None:intergenic | 30.0% |
| AGACGATAAATAAGCCAAAT+AGG | - | chr4_4:75664734-75664753 | Msa0703660:intron | 30.0% | |
| ATGCATCATTGAATCCTATT+TGG | + | chr4_4:75664751-75664770 | None:intergenic | 30.0% | |
| !!! | AATGATGCATTTTTTTGGCT+AGG | - | chr4_4:75664761-75664780 | Msa0703660:intron | 30.0% |
| !!! | TGTGAAAATTTTAACTTGGC+AGG | - | chr4_4:75664802-75664821 | Msa0703660:intron | 30.0% |
| TAGAAGTTCTCAAAAACAAG+TGG | - | chr4_4:75665016-75665035 | Msa0703660:intron | 30.0% | |
| AAGCAAACAAATAGTAGACA+TGG | - | chr4_4:75665058-75665077 | Msa0703660:intron | 30.0% | |
| AGCAAACAAATAGTAGACAT+GGG | - | chr4_4:75665059-75665078 | Msa0703660:intron | 30.0% | |
| CTCACCAAATAACTTACTTA+TGG | + | chr4_4:75665102-75665121 | None:intergenic | 30.0% | |
| ATATTTATCTTCCAGACAGT+AGG | - | chr4_4:75665153-75665172 | Msa0703660:five_prime_UTR | 30.0% | |
| AAAAATTGTCCAAACTACGG+CGG | - | chr4_4:75663488-75663507 | Msa0703660:CDS | 35.0% | |
| GGAACAAGAGTAACTTTGAA+AGG | + | chr4_4:75663523-75663542 | None:intergenic | 35.0% | |
| TTCAAAGTTACTCTTGTTCC+TGG | - | chr4_4:75663523-75663542 | Msa0703660:CDS | 35.0% | |
| AACCCTTGTTCTTGAATATC+AGG | - | chr4_4:75663576-75663595 | Msa0703660:CDS | 35.0% | |
| GAACCTGATATTCAAGAACA+AGG | + | chr4_4:75663582-75663601 | None:intergenic | 35.0% | |
| GATATTAGCAAATAAGCGGA+TGG | + | chr4_4:75663638-75663657 | None:intergenic | 35.0% | |
| !! | TGGTTGCAGCTTTTGATTAA+TGG | - | chr4_4:75663669-75663688 | Msa0703660:CDS | 35.0% |
| !! | TGCAGCTTTTGATTAATGGA+AGG | - | chr4_4:75663673-75663692 | Msa0703660:CDS | 35.0% |
| GATTAATGGAAGGAAACAAG+TGG | - | chr4_4:75663683-75663702 | Msa0703660:CDS | 35.0% | |
| TTAATGGAAGGAAACAAGTG+GGG | - | chr4_4:75663685-75663704 | Msa0703660:CDS | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | + | chr4_4:75663823-75663842 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGAATTGCGATT+TGG | + | chr4_4:75663824-75663843 | None:intergenic | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | + | chr4_4:75663895-75663914 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | + | chr4_4:75663912-75663931 | None:intergenic | 35.0% |
| AGCTGATAAACTAACTTAGG+TGG | - | chr4_4:75663928-75663947 | Msa0703660:intron | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | + | chr4_4:75664151-75664170 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | + | chr4_4:75664288-75664307 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | + | chr4_4:75664376-75664395 | None:intergenic | 35.0% | |
| ! | TTAACTTGGCAGGTATCTTA+TGG | - | chr4_4:75664812-75664831 | Msa0703660:intron | 35.0% |
| GAAATGTACGAAAAGGTTTC+TGG | - | chr4_4:75664888-75664907 | Msa0703660:CDS | 35.0% | |
| AAAAATTGTCCAAACTACGG+CGG | - | chr4_4:75663488-75663507 | Msa0703660:CDS | 35.0% | |
| GGAACAAGAGTAACTTTGAA+AGG | + | chr4_4:75663523-75663542 | None:intergenic | 35.0% | |
| TTCAAAGTTACTCTTGTTCC+TGG | - | chr4_4:75663523-75663542 | Msa0703660:CDS | 35.0% | |
| AACCCTTGTTCTTGAATATC+AGG | - | chr4_4:75663576-75663595 | Msa0703660:CDS | 35.0% | |
| GAACCTGATATTCAAGAACA+AGG | + | chr4_4:75663582-75663601 | None:intergenic | 35.0% | |
| GATATTAGCAAATAAGCGGA+TGG | + | chr4_4:75663638-75663657 | None:intergenic | 35.0% | |
| !! | TGGTTGCAGCTTTTGATTAA+TGG | - | chr4_4:75663669-75663688 | Msa0703660:CDS | 35.0% |
| !! | TGCAGCTTTTGATTAATGGA+AGG | - | chr4_4:75663673-75663692 | Msa0703660:CDS | 35.0% |
| GATTAATGGAAGGAAACAAG+TGG | - | chr4_4:75663683-75663702 | Msa0703660:CDS | 35.0% | |
| TTAATGGAAGGAAACAAGTG+GGG | - | chr4_4:75663685-75663704 | Msa0703660:CDS | 35.0% | |
| TTTGACCTGAATTGCGATTT+GGG | + | chr4_4:75663823-75663842 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGAATTGCGATT+TGG | + | chr4_4:75663824-75663843 | None:intergenic | 35.0% |
| ! | CAGAGGCATAAATATGATAG+AGG | + | chr4_4:75663895-75663914 | None:intergenic | 35.0% |
| !!! | AGCTATTTTTCACCAAACAG+AGG | + | chr4_4:75663912-75663931 | None:intergenic | 35.0% |
| AGCTGATAAACTAACTTAGG+TGG | - | chr4_4:75663928-75663947 | Msa0703660:intron | 35.0% | |
| CATGAGCTTATAGCTTATAG+TGG | + | chr4_4:75664151-75664170 | None:intergenic | 35.0% | |
| TCACTAGTAAGTCACCATAT+AGG | + | chr4_4:75664288-75664307 | None:intergenic | 35.0% | |
| TCAAATCAACACTAAAGCAG+GGG | + | chr4_4:75664376-75664395 | None:intergenic | 35.0% | |
| ! | TTAACTTGGCAGGTATCTTA+TGG | - | chr4_4:75664812-75664831 | Msa0703660:intron | 35.0% |
| GAAATGTACGAAAAGGTTTC+TGG | - | chr4_4:75664888-75664907 | Msa0703660:CDS | 35.0% | |
| ! | TGTCTGAGATAGAGAAAACC+AGG | + | chr4_4:75663544-75663563 | None:intergenic | 40.0% |
| AAGAATGAGATGTGAAGCGA+AGG | + | chr4_4:75663798-75663817 | None:intergenic | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | - | chr4_4:75664447-75664466 | Msa0703660:intron | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | - | chr4_4:75664469-75664488 | Msa0703660:intron | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | - | chr4_4:75664490-75664509 | Msa0703660:intron | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | - | chr4_4:75664505-75664524 | Msa0703660:intron | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | - | chr4_4:75664540-75664559 | Msa0703660:intron | 40.0% | |
| GAAGAGTCTCACAATCCTTA+AGG | - | chr4_4:75664621-75664640 | Msa0703660:intron | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | - | chr4_4:75664960-75664979 | Msa0703660:CDS | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | - | chr4_4:75664961-75664980 | Msa0703660:CDS | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | - | chr4_4:75665026-75665045 | Msa0703660:intron | 40.0% | |
| ACTTATGGAAAGCTCGACTT+TGG | + | chr4_4:75665087-75665106 | None:intergenic | 40.0% | |
| ! | GATTTTCTGAACCTACTGTC+TGG | + | chr4_4:75665167-75665186 | None:intergenic | 40.0% |
| AGGTTCAGAAAATCTTCTCC+AGG | - | chr4_4:75665173-75665192 | Msa0703660:five_prime_UTR | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | + | chr4_4:75665194-75665213 | None:intergenic | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | + | chr4_4:75665203-75665222 | None:intergenic | 40.0% | |
| ! | ATTTTCTGCTGTGCTTGTCT+AGG | - | chr4_4:75665204-75665223 | Msa0703660:five_prime_UTR | 40.0% |
| ! | TGTCTGAGATAGAGAAAACC+AGG | + | chr4_4:75663544-75663563 | None:intergenic | 40.0% |
| AAGAATGAGATGTGAAGCGA+AGG | + | chr4_4:75663798-75663817 | None:intergenic | 40.0% | |
| ATGGAATGAAGAGATGGGAA+TGG | - | chr4_4:75664447-75664466 | Msa0703660:intron | 40.0% | |
| GCAGAGGTTATTGAGAAGAA+TGG | - | chr4_4:75664469-75664488 | Msa0703660:intron | 40.0% | |
| GGAAAAATGTGGGTATCTAC+TGG | - | chr4_4:75664490-75664509 | Msa0703660:intron | 40.0% | |
| TCTACTGGAATAGTTCGTAG+TGG | - | chr4_4:75664505-75664524 | Msa0703660:intron | 40.0% | |
| TTCAATCGAGGAGACATTGT+AGG | - | chr4_4:75664540-75664559 | Msa0703660:intron | 40.0% | |
| GAAGAGTCTCACAATCCTTA+AGG | - | chr4_4:75664621-75664640 | Msa0703660:intron | 40.0% | |
| AAGTCTCTCGGCTACATAAT+TGG | - | chr4_4:75664960-75664979 | Msa0703660:CDS | 40.0% | |
| AGTCTCTCGGCTACATAATT+GGG | - | chr4_4:75664961-75664980 | Msa0703660:CDS | 40.0% | |
| CAAAAACAAGTGGCTCTTGA+AGG | - | chr4_4:75665026-75665045 | Msa0703660:intron | 40.0% | |
| ACTTATGGAAAGCTCGACTT+TGG | + | chr4_4:75665087-75665106 | None:intergenic | 40.0% | |
| ! | GATTTTCTGAACCTACTGTC+TGG | + | chr4_4:75665167-75665186 | None:intergenic | 40.0% |
| AGGTTCAGAAAATCTTCTCC+AGG | - | chr4_4:75665173-75665192 | Msa0703660:five_prime_UTR | 40.0% | |
| AGCAGAAAATTTGGATCACC+TGG | + | chr4_4:75665194-75665213 | None:intergenic | 40.0% | |
| GACAAGCACAGCAGAAAATT+TGG | + | chr4_4:75665203-75665222 | None:intergenic | 40.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | - | chr4_4:75663815-75663834 | Msa0703660:CDS | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | - | chr4_4:75664428-75664447 | Msa0703660:intron | 45.0% | |
| ! | CTCTTCATTCCATCTGGCTT+TGG | + | chr4_4:75664440-75664459 | None:intergenic | 45.0% |
| AGCCAGATGGAATGAAGAGA+TGG | - | chr4_4:75664441-75664460 | Msa0703660:intron | 45.0% | |
| GCCAGATGGAATGAAGAGAT+GGG | - | chr4_4:75664442-75664461 | Msa0703660:intron | 45.0% | |
| TCCCATCTCTTCATTCCATC+TGG | + | chr4_4:75664446-75664465 | None:intergenic | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | - | chr4_4:75664819-75664838 | Msa0703660:intron | 45.0% | |
| TTCGCTGTCTACGAGATGTA+AGG | + | chr4_4:75664847-75664866 | None:intergenic | 45.0% | |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | - | chr4_4:75664892-75664911 | Msa0703660:CDS | 45.0% |
| TTATGTAGCCGAGAGACTTG+AGG | + | chr4_4:75664959-75664978 | None:intergenic | 45.0% | |
| CTTTGCCCAAATCGCAATTC+AGG | - | chr4_4:75663815-75663834 | Msa0703660:CDS | 45.0% | |
| ACGTCAAATCCAAAGCCAGA+TGG | - | chr4_4:75664428-75664447 | Msa0703660:intron | 45.0% | |
| ! | CTCTTCATTCCATCTGGCTT+TGG | + | chr4_4:75664440-75664459 | None:intergenic | 45.0% |
| AGCCAGATGGAATGAAGAGA+TGG | - | chr4_4:75664441-75664460 | Msa0703660:intron | 45.0% | |
| GCCAGATGGAATGAAGAGAT+GGG | - | chr4_4:75664442-75664461 | Msa0703660:intron | 45.0% | |
| TCCCATCTCTTCATTCCATC+TGG | + | chr4_4:75664446-75664465 | None:intergenic | 45.0% | |
| GGCAGGTATCTTATGGAACT+AGG | - | chr4_4:75664819-75664838 | Msa0703660:intron | 45.0% | |
| TTCGCTGTCTACGAGATGTA+AGG | + | chr4_4:75664847-75664866 | None:intergenic | 45.0% | |
| !! | TGTACGAAAAGGTTTCTGGC+AGG | - | chr4_4:75664892-75664911 | Msa0703660:CDS | 45.0% |
| TTATGTAGCCGAGAGACTTG+AGG | + | chr4_4:75664959-75664978 | None:intergenic | 45.0% | |
| ACACTAAAGCAGGGGAAGCA+GGG | + | chr4_4:75664368-75664387 | None:intergenic | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | + | chr4_4:75664369-75664388 | None:intergenic | 50.0% | |
| !! | GGCTTTGGATTTGACGTTCC+TGG | + | chr4_4:75664425-75664444 | None:intergenic | 50.0% |
| TGAAGAGATGGGAATGGCAG+AGG | - | chr4_4:75664453-75664472 | Msa0703660:intron | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | - | chr4_4:75664900-75664919 | Msa0703660:CDS | 50.0% |
| CAGGAAGACCGGATGTTGTT+GGG | - | chr4_4:75664911-75664930 | Msa0703660:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | + | chr4_4:75664922-75664941 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | - | chr4_4:75664923-75664942 | Msa0703660:CDS | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | - | chr4_4:75664948-75664967 | Msa0703660:CDS | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | - | chr4_4:75664964-75664983 | Msa0703660:CDS | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | - | chr4_4:75664979-75664998 | Msa0703660:CDS | 50.0% | |
| ACACTAAAGCAGGGGAAGCA+GGG | + | chr4_4:75664368-75664387 | None:intergenic | 50.0% | |
| AACACTAAAGCAGGGGAAGC+AGG | + | chr4_4:75664369-75664388 | None:intergenic | 50.0% | |
| !! | GGCTTTGGATTTGACGTTCC+TGG | + | chr4_4:75664425-75664444 | None:intergenic | 50.0% |
| TGAAGAGATGGGAATGGCAG+AGG | - | chr4_4:75664453-75664472 | Msa0703660:intron | 50.0% | |
| !! | AAGGTTTCTGGCAGGAAGAC+CGG | - | chr4_4:75664900-75664919 | Msa0703660:CDS | 50.0% |
| CAGGAAGACCGGATGTTGTT+GGG | - | chr4_4:75664911-75664930 | Msa0703660:CDS | 50.0% | |
| GAACAGCTCCCAACAACATC+CGG | + | chr4_4:75664922-75664941 | None:intergenic | 50.0% | |
| ATGTTGTTGGGAGCTGTTCG+AGG | - | chr4_4:75664923-75664942 | Msa0703660:CDS | 50.0% | |
| TACAGGCACCTCAAGTCTCT+CGG | - | chr4_4:75664948-75664967 | Msa0703660:CDS | 50.0% | |
| CTCTCGGCTACATAATTGGG+CGG | - | chr4_4:75664964-75664983 | Msa0703660:CDS | 50.0% | |
| TTGGGCGGCATAATGTTGCT+TGG | - | chr4_4:75664979-75664998 | Msa0703660:CDS | 50.0% | |
| GTTCTATCGCCGCCGTAGTT+TGG | + | chr4_4:75663500-75663519 | None:intergenic | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | - | chr4_4:75664910-75664929 | Msa0703660:CDS | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | + | chr4_4:75664949-75664968 | None:intergenic | 55.0% |
| GTTCTATCGCCGCCGTAGTT+TGG | + | chr4_4:75663500-75663519 | None:intergenic | 55.0% | |
| GCAGGAAGACCGGATGTTGT+TGG | - | chr4_4:75664910-75664929 | Msa0703660:CDS | 55.0% | |
| ! | GAGAGACTTGAGGTGCCTGT+AGG | + | chr4_4:75664949-75664968 | None:intergenic | 55.0% |
| GGGAGCTGTTCGAGGCCTAC+AGG | - | chr4_4:75664931-75664950 | Msa0703660:CDS | 65.0% | |
| GGGAGCTGTTCGAGGCCTAC+AGG | - | chr4_4:75664931-75664950 | Msa0703660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 75663472 | 75665226 | 75663472 | ID=Msa0703660;Name=Msa0703660 |
| chr4_4 | mRNA | 75663472 | 75665226 | 75663472 | ID=Msa0703660-mRNA-1;Parent=Msa0703660;Name=Msa0703660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=136|1|0.75|1|0.66|0.25|4|0|228 |
| chr4_4 | exon | 75663472 | 75663874 | 75663472 | ID=Msa0703660-mRNA-1:exon:23774;Parent=Msa0703660-mRNA-1 |
| chr4_4 | exon | 75664141 | 75664272 | 75664141 | ID=Msa0703660-mRNA-1:exon:23773;Parent=Msa0703660-mRNA-1 |
| chr4_4 | exon | 75664862 | 75665020 | 75664862 | ID=Msa0703660-mRNA-1:exon:23772;Parent=Msa0703660-mRNA-1 |
| chr4_4 | exon | 75665101 | 75665226 | 75665101 | ID=Msa0703660-mRNA-1:exon:23771;Parent=Msa0703660-mRNA-1 |
| chr4_4 | five_prime_UTR | 75665101 | 75665226 | 75665101 | ID=Msa0703660-mRNA-1:five_prime_utr;Parent=Msa0703660-mRNA-1 |
| chr4_4 | five_prime_UTR | 75665011 | 75665020 | 75665011 | ID=Msa0703660-mRNA-1:five_prime_utr;Parent=Msa0703660-mRNA-1 |
| chr4_4 | CDS | 75664862 | 75665010 | 75664862 | ID=Msa0703660-mRNA-1:cds;Parent=Msa0703660-mRNA-1 |
| chr4_4 | CDS | 75664141 | 75664272 | 75664141 | ID=Msa0703660-mRNA-1:cds;Parent=Msa0703660-mRNA-1 |
| chr4_4 | CDS | 75663472 | 75663874 | 75663472 | ID=Msa0703660-mRNA-1:cds;Parent=Msa0703660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
