AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201810 MtrunA17_Chr8g0372051 97.909 287 6 0 1 287 1 287 0.0 568
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201810 AT2G17990.1 51.195 293 125 5 1 287 1 281 1.09e-91 275
Msa1201810 AT2G17990.2 51.195 293 125 5 1 287 1 281 1.38e-91 274
Msa1201810 AT2G17990.3 51.195 293 125 5 1 287 11 291 2.23e-91 275
Msa1201810 AT5G66250.1 46.897 290 112 4 1 287 1 251 8.85e-71 221
Msa1201810 AT5G66250.3 46.897 290 112 4 1 287 1 251 8.85e-71 221
Msa1201810 AT5G66250.2 46.897 290 112 4 1 287 1 251 8.85e-71 221
Msa1201810 AT5G66250.4 46.897 290 112 4 1 287 1 251 1.94e-70 221
Msa1201810 AT4G36105.2 33.061 245 96 5 44 286 12 190 4.53e-25 100
Msa1201810 AT4G36105.1 33.610 241 92 5 44 282 12 186 4.62e-25 100

Find 66 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAGCTTCTCAATAGTT+TGG 0.270471 8_1:-55092814 None:intergenic
AGAGCTTAGTCGAGTGAAAC+AGG 0.376727 8_1:+55092715 Msa1201810:CDS
TTCAGAGGAAGACTCGAAAA+AGG 0.376874 8_1:+55092130 Msa1201810:CDS
TCATAAAAGGCCGATGATAT+CGG 0.385672 8_1:-55091246 None:intergenic
CAAAGAAGGGGTCCCGTTAT+CGG 0.388084 8_1:+55092295 Msa1201810:CDS
ACTTTACTCGAGGGAAAGAT+AGG 0.390209 8_1:+55091357 Msa1201810:five_prime_UTR
AAAAGAAACATTACAACAAC+AGG 0.393533 8_1:-55091334 None:intergenic
AAAGAGTTGGTGATCTGATA+TGG 0.395399 8_1:+55091304 Msa1201810:five_prime_UTR
GCAAAGAGTTGCGGATTTGA+TGG 0.395456 8_1:+55092649 Msa1201810:CDS
GCAATACATCTACGTGAGAT+TGG 0.401940 8_1:-55092070 None:intergenic
GAACATGTCTATGAAATTAG+AGG 0.405432 8_1:+55092577 Msa1201810:CDS
TCAAGGTTTGTTAGACGAAC+AGG 0.411492 8_1:+55092391 Msa1201810:CDS
TCGTCTTCTTCACCCTTCTC+AGG 0.413523 8_1:+55091424 Msa1201810:five_prime_UTR
CAAGTGTCTTGACTATTATC+TGG 0.415206 8_1:+55092873 Msa1201810:three_prime_UTR
TGAGATCAAGGCGAGTATAC+AGG 0.423974 8_1:+55092106 Msa1201810:CDS
TCCCGTTATCGGATTGGTCT+AGG 0.436387 8_1:+55092306 Msa1201810:CDS
GTCGGGTTTGAAGTCTCTGT+CGG 0.438018 8_1:+55092007 Msa1201810:CDS
TCCTAGACCAATCCGATAAC+GGG 0.442238 8_1:-55092307 None:intergenic
GGTGAAGATATTGCATTGTC+GGG 0.449678 8_1:+55091990 Msa1201810:CDS
ATCGGAAACTGCACTTGAAA+AGG 0.451142 8_1:+55092502 Msa1201810:CDS
GGGTGAAGATATTGCATTGT+CGG 0.452653 8_1:+55091989 Msa1201810:CDS
GAACAGGACGCTGTTTATAT+AGG 0.461877 8_1:+55092407 Msa1201810:CDS
CGTAGATGTATTGCAAGAAA+AGG 0.466690 8_1:+55092079 Msa1201810:CDS
GTCTATGAAATTAGAGGAGA+TGG 0.468338 8_1:+55092583 Msa1201810:CDS
TTCCTAGACCAATCCGATAA+CGG 0.504695 8_1:-55092308 None:intergenic
TAGGACTTGTTGACAAAGAA+GGG 0.509541 8_1:+55092282 Msa1201810:CDS
GTAGGACTTGTTGACAAAGA+AGG 0.515372 8_1:+55092281 Msa1201810:CDS
GGTGAAGAAGACGATGATGA+AGG 0.516234 8_1:-55091415 None:intergenic
TGATGGAAGCTCTTGTGAAA+AGG 0.517318 8_1:+55092465 Msa1201810:CDS
CATTTAGCGCAGACGTCGTG+TGG 0.519200 8_1:+55092239 Msa1201810:CDS
GATGGAAGCTCTTGTGAAAA+GGG 0.523267 8_1:+55092466 Msa1201810:CDS
AGAAAAGGTTAATGAGATCA+AGG 0.523536 8_1:+55092094 Msa1201810:CDS
TCATGTGATACGTGGAAGGA+AGG 0.528893 8_1:+55092035 Msa1201810:CDS
CACGACGTCTGCGCTAAATG+AGG 0.531569 8_1:-55092236 None:intergenic
AAGGGGTCCCGTTATCGGAT+TGG 0.533469 8_1:+55092300 Msa1201810:CDS
TCGGGTTTGAAGTCTCTGTC+GGG 0.538898 8_1:+55092008 Msa1201810:CDS
AATTTAGCATGAAATTATGC+AGG 0.542273 8_1:-55092946 None:intergenic
CGATATGCGGCAAAGAGTTG+CGG 0.550984 8_1:+55092640 Msa1201810:CDS
TCAAGAATAAAGCAAAGAGT+TGG 0.553017 8_1:+55091291 Msa1201810:five_prime_UTR
AAAGTCGAAAGCTAGAATCA+TGG 0.560818 8_1:+55092208 Msa1201810:CDS
GGCGAGTATACAGGGTTCAG+AGG 0.561421 8_1:+55092115 Msa1201810:CDS
TAGAGAGAGAGAACCTGAGA+AGG 0.567685 8_1:-55091437 None:intergenic
GAGATCAAGGCGAGTATACA+GGG 0.570374 8_1:+55092107 Msa1201810:CDS
TATTATACAGAAAATGGCGG+CGG 0.573923 8_1:+55091968 Msa1201810:intron
GTGAAGAAGACGATGATGAA+GGG 0.574187 8_1:-55091414 None:intergenic
GATACTAAACTCTGTTCAGA+TGG 0.582408 8_1:+55092433 Msa1201810:CDS
TTCGTTTGACCTAGTCGTGG+TGG 0.590965 8_1:+55092916 Msa1201810:three_prime_UTR
CTATTGAGAAGCTGTTTGAA+CGG 0.594283 8_1:+55092819 Msa1201810:CDS
CATGTGATACGTGGAAGGAA+GGG 0.598517 8_1:+55092036 Msa1201810:CDS
TCATAGTCATCCGATATCAT+CGG 0.598932 8_1:+55091236 Msa1201810:five_prime_UTR
ATAGGAATTAGCCGTCATCA+AGG 0.599347 8_1:+55092374 Msa1201810:CDS
TGATACGTGGAAGGAAGGGA+TGG 0.601080 8_1:+55092040 Msa1201810:CDS
TCAGATGGTCACTGATGTGA+TGG 0.602734 8_1:+55092448 Msa1201810:CDS
GAAGATGCAGAATCGTGGAT+AGG 0.605981 8_1:+55092356 Msa1201810:CDS
ATTATACAGAAAATGGCGGC+GGG 0.609761 8_1:+55091969 Msa1201810:intron
TCAATCATGTGATACGTGGA+AGG 0.612583 8_1:+55092031 Msa1201810:CDS
AGAGAGAGAGAACCTGAGAA+GGG 0.613512 8_1:-55091436 None:intergenic
GGAAGTATACCACCACGACT+AGG 0.621594 8_1:-55092925 None:intergenic
CGTCTAACAAACCTTGATGA+CGG 0.621672 8_1:-55092385 None:intergenic
ATGACGAAGATGCAGAATCG+TGG 0.632880 8_1:+55092351 Msa1201810:CDS
TAGTAGTCTAATCACAGTGA+GGG 0.635665 8_1:+55092763 Msa1201810:CDS
AAGAAGACGATGATGAAGGG+TGG 0.644245 8_1:-55091411 None:intergenic
CAATATTATACAGAAAATGG+CGG 0.658537 8_1:+55091965 Msa1201810:intron
AGGACTTGTTGACAAAGAAG+GGG 0.685952 8_1:+55092283 Msa1201810:CDS
CGATGATGAAGGGTGGATCG+TGG 0.701320 8_1:-55091404 None:intergenic
TTAGTAGTCTAATCACAGTG+AGG 0.744586 8_1:+55092762 Msa1201810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATCTTTTTAATTCATAAA+AGG - chr8_1:55091262-55091281 None:intergenic 15.0%
!! ATGAATTAAAAAGATGAAAA+AGG + chr8_1:55091265-55091284 Msa1201810:five_prime_UTR 15.0%
!! GTATATAAGATTAAATTGAT+AGG + chr8_1:55091741-55091760 Msa1201810:intron 15.0%
!!! TCATCTTTTTAATTCATAAA+AGG - chr8_1:55091262-55091281 None:intergenic 15.0%
!! ATGAATTAAAAAGATGAAAA+AGG + chr8_1:55091265-55091284 Msa1201810:five_prime_UTR 15.0%
!! GTATATAAGATTAAATTGAT+AGG + chr8_1:55091741-55091760 Msa1201810:intron 15.0%
!! AATGAAGTAAAACAATTAGT+GGG - chr8_1:55091618-55091637 None:intergenic 20.0%
!! AAATGAAGTAAAACAATTAG+TGG - chr8_1:55091619-55091638 None:intergenic 20.0%
!!! TATTATTGATTGCTTTTGAT+TGG + chr8_1:55091817-55091836 Msa1201810:intron 20.0%
!!! ATTATTGATTGCTTTTGATT+GGG + chr8_1:55091818-55091837 Msa1201810:intron 20.0%
!! TATATTGATGCATATGATTT+AGG + chr8_1:55091914-55091933 Msa1201810:intron 20.0%
!! ATCCAATATTATACAGAAAA+TGG + chr8_1:55091962-55091981 Msa1201810:intron 20.0%
!! AATGAAGTAAAACAATTAGT+GGG - chr8_1:55091618-55091637 None:intergenic 20.0%
!! AAATGAAGTAAAACAATTAG+TGG - chr8_1:55091619-55091638 None:intergenic 20.0%
!!! TATTATTGATTGCTTTTGAT+TGG + chr8_1:55091817-55091836 Msa1201810:intron 20.0%
!!! ATTATTGATTGCTTTTGATT+GGG + chr8_1:55091818-55091837 Msa1201810:intron 20.0%
!! TATATTGATGCATATGATTT+AGG + chr8_1:55091914-55091933 Msa1201810:intron 20.0%
!! ATCCAATATTATACAGAAAA+TGG + chr8_1:55091962-55091981 Msa1201810:intron 20.0%
! AAAAGAAACATTACAACAAC+AGG - chr8_1:55091337-55091356 None:intergenic 25.0%
! AGAATATAGAAGAAGGAAAA+GGG - chr8_1:55091464-55091483 None:intergenic 25.0%
! AGTAAAGAGAATATAGAAGA+AGG - chr8_1:55091471-55091490 None:intergenic 25.0%
! AAATTACTTTACTTTCATCC+TGG + chr8_1:55091645-55091664 Msa1201810:intron 25.0%
! TGCATCAATATAAAGATGTA+AGG - chr8_1:55091906-55091925 None:intergenic 25.0%
! CAATATTATACAGAAAATGG+CGG + chr8_1:55091965-55091984 Msa1201810:intron 25.0%
!!! ATAGTATTTTGAACGATATG+CGG + chr8_1:55092627-55092646 Msa1201810:CDS 25.0%
! AATTTAGCATGAAATTATGC+AGG - chr8_1:55092949-55092968 None:intergenic 25.0%
! AAAAGAAACATTACAACAAC+AGG - chr8_1:55091337-55091356 None:intergenic 25.0%
! AGAATATAGAAGAAGGAAAA+GGG - chr8_1:55091464-55091483 None:intergenic 25.0%
! AGTAAAGAGAATATAGAAGA+AGG - chr8_1:55091471-55091490 None:intergenic 25.0%
! AAATTACTTTACTTTCATCC+TGG + chr8_1:55091645-55091664 Msa1201810:intron 25.0%
! TGCATCAATATAAAGATGTA+AGG - chr8_1:55091906-55091925 None:intergenic 25.0%
! CAATATTATACAGAAAATGG+CGG + chr8_1:55091965-55091984 Msa1201810:intron 25.0%
!!! ATAGTATTTTGAACGATATG+CGG + chr8_1:55092627-55092646 Msa1201810:CDS 25.0%
! AATTTAGCATGAAATTATGC+AGG - chr8_1:55092949-55092968 None:intergenic 25.0%
TCAAGAATAAAGCAAAGAGT+TGG + chr8_1:55091291-55091310 Msa1201810:five_prime_UTR 30.0%
! TGTTTCTTTTACTTTACTCG+AGG + chr8_1:55091347-55091366 Msa1201810:five_prime_UTR 30.0%
! GTTTCTTTTACTTTACTCGA+GGG + chr8_1:55091348-55091367 Msa1201810:five_prime_UTR 30.0%
GAATATAGAAGAAGGAAAAG+GGG - chr8_1:55091463-55091482 None:intergenic 30.0%
GAGAATATAGAAGAAGGAAA+AGG - chr8_1:55091465-55091484 None:intergenic 30.0%
TAGCAATCAAAGTAAAAACG+AGG - chr8_1:55091519-55091538 None:intergenic 30.0%
AAATGAAGTTTAAACCGATC+TGG - chr8_1:55091562-55091581 None:intergenic 30.0%
! TCGGTTTAAACTTCATTTTC+TGG + chr8_1:55091564-55091583 Msa1201810:intron 30.0%
! CGGTTTAAACTTCATTTTCT+GGG + chr8_1:55091565-55091584 Msa1201810:intron 30.0%
! GGTTTAAACTTCATTTTCTG+GGG + chr8_1:55091566-55091585 Msa1201810:intron 30.0%
! TTAGTGGGTAGAAAATTATG+AGG - chr8_1:55091603-55091622 None:intergenic 30.0%
GAATTACATTTACCAGTTCA+AGG - chr8_1:55091686-55091705 None:intergenic 30.0%
TAGTTCCAATGTGGTTTATT+AGG + chr8_1:55091857-55091876 Msa1201810:intron 30.0%
AGTTCCAATGTGGTTTATTA+GGG + chr8_1:55091858-55091877 Msa1201810:intron 30.0%
AAAACCCTAATAAACCACAT+TGG - chr8_1:55091865-55091884 None:intergenic 30.0%
!! CGCCATTTTCTGTATAATAT+TGG - chr8_1:55091967-55091986 None:intergenic 30.0%
AGAAAAGGTTAATGAGATCA+AGG + chr8_1:55092094-55092113 Msa1201810:CDS 30.0%
! AAAAGGAATTAGAGGTTTTG+TGG + chr8_1:55092147-55092166 Msa1201810:CDS 30.0%
!! TCTTGTGAAAAGGGTTTTAT+TGG + chr8_1:55092475-55092494 Msa1201810:CDS 30.0%
GAAAAGGAAAAAGTGAGTTT+AGG + chr8_1:55092518-55092537 Msa1201810:CDS 30.0%
GAACATGTCTATGAAATTAG+AGG + chr8_1:55092577-55092596 Msa1201810:CDS 30.0%
TCAAGAATAAAGCAAAGAGT+TGG + chr8_1:55091291-55091310 Msa1201810:five_prime_UTR 30.0%
! TGTTTCTTTTACTTTACTCG+AGG + chr8_1:55091347-55091366 Msa1201810:five_prime_UTR 30.0%
! GTTTCTTTTACTTTACTCGA+GGG + chr8_1:55091348-55091367 Msa1201810:five_prime_UTR 30.0%
GAATATAGAAGAAGGAAAAG+GGG - chr8_1:55091463-55091482 None:intergenic 30.0%
GAGAATATAGAAGAAGGAAA+AGG - chr8_1:55091465-55091484 None:intergenic 30.0%
TAGCAATCAAAGTAAAAACG+AGG - chr8_1:55091519-55091538 None:intergenic 30.0%
AAATGAAGTTTAAACCGATC+TGG - chr8_1:55091562-55091581 None:intergenic 30.0%
! TCGGTTTAAACTTCATTTTC+TGG + chr8_1:55091564-55091583 Msa1201810:intron 30.0%
! CGGTTTAAACTTCATTTTCT+GGG + chr8_1:55091565-55091584 Msa1201810:intron 30.0%
! GGTTTAAACTTCATTTTCTG+GGG + chr8_1:55091566-55091585 Msa1201810:intron 30.0%
! TTAGTGGGTAGAAAATTATG+AGG - chr8_1:55091603-55091622 None:intergenic 30.0%
GAATTACATTTACCAGTTCA+AGG - chr8_1:55091686-55091705 None:intergenic 30.0%
TAGTTCCAATGTGGTTTATT+AGG + chr8_1:55091857-55091876 Msa1201810:intron 30.0%
AGTTCCAATGTGGTTTATTA+GGG + chr8_1:55091858-55091877 Msa1201810:intron 30.0%
AAAACCCTAATAAACCACAT+TGG - chr8_1:55091865-55091884 None:intergenic 30.0%
!! CGCCATTTTCTGTATAATAT+TGG - chr8_1:55091967-55091986 None:intergenic 30.0%
AGAAAAGGTTAATGAGATCA+AGG + chr8_1:55092094-55092113 Msa1201810:CDS 30.0%
! AAAAGGAATTAGAGGTTTTG+TGG + chr8_1:55092147-55092166 Msa1201810:CDS 30.0%
!! TCTTGTGAAAAGGGTTTTAT+TGG + chr8_1:55092475-55092494 Msa1201810:CDS 30.0%
GAAAAGGAAAAAGTGAGTTT+AGG + chr8_1:55092518-55092537 Msa1201810:CDS 30.0%
GAACATGTCTATGAAATTAG+AGG + chr8_1:55092577-55092596 Msa1201810:CDS 30.0%
TCATAGTCATCCGATATCAT+CGG + chr8_1:55091236-55091255 Msa1201810:five_prime_UTR 35.0%
TCATAAAAGGCCGATGATAT+CGG - chr8_1:55091249-55091268 None:intergenic 35.0%
!! AAAGAGTTGGTGATCTGATA+TGG + chr8_1:55091304-55091323 Msa1201810:five_prime_UTR 35.0%
AAACCGATCTGGAAGATAAA+GGG - chr8_1:55091551-55091570 None:intergenic 35.0%
TAAACCGATCTGGAAGATAA+AGG - chr8_1:55091552-55091571 None:intergenic 35.0%
!! TTAAACTTCATTTTCTGGGG+TGG + chr8_1:55091569-55091588 Msa1201810:intron 35.0%
!!! TAAACTTCATTTTCTGGGGT+GGG + chr8_1:55091570-55091589 Msa1201810:intron 35.0%
!! CTTTTGATTGGGCTTTACTT+TGG + chr8_1:55091829-55091848 Msa1201810:intron 35.0%
!! TTGGATTTCTAGTTCCAATG+TGG + chr8_1:55091848-55091867 Msa1201810:intron 35.0%
TATTATACAGAAAATGGCGG+CGG + chr8_1:55091968-55091987 Msa1201810:intron 35.0%
CGTAGATGTATTGCAAGAAA+AGG + chr8_1:55092079-55092098 Msa1201810:CDS 35.0%
AGACTCGAAAAAGGAATTAG+AGG + chr8_1:55092139-55092158 Msa1201810:CDS 35.0%
AAAGTCGAAAGCTAGAATCA+TGG + chr8_1:55092208-55092227 Msa1201810:CDS 35.0%
TGTGGAATCAAAAAGTTGGA+TGG + chr8_1:55092257-55092276 Msa1201810:CDS 35.0%
GTGGAATCAAAAAGTTGGAT+GGG + chr8_1:55092258-55092277 Msa1201810:CDS 35.0%
TGGAATCAAAAAGTTGGATG+GGG + chr8_1:55092259-55092278 Msa1201810:CDS 35.0%
!! TAGGACTTGTTGACAAAGAA+GGG + chr8_1:55092282-55092301 Msa1201810:CDS 35.0%
GATACTAAACTCTGTTCAGA+TGG + chr8_1:55092433-55092452 Msa1201810:CDS 35.0%
!!! TGTGAAAAGGGTTTTATTGG+CGG + chr8_1:55092478-55092497 Msa1201810:CDS 35.0%
GTCTATGAAATTAGAGGAGA+TGG + chr8_1:55092583-55092602 Msa1201810:CDS 35.0%
TTAGTAGTCTAATCACAGTG+AGG + chr8_1:55092762-55092781 Msa1201810:CDS 35.0%
TAGTAGTCTAATCACAGTGA+GGG + chr8_1:55092763-55092782 Msa1201810:CDS 35.0%
!! AGTTTGGAATTGCTTTTCTG+AGG - chr8_1:55092801-55092820 None:intergenic 35.0%
CAAACAGCTTCTCAATAGTT+TGG - chr8_1:55092817-55092836 None:intergenic 35.0%
CTATTGAGAAGCTGTTTGAA+CGG + chr8_1:55092819-55092838 Msa1201810:CDS 35.0%
CAAGTGTCTTGACTATTATC+TGG + chr8_1:55092873-55092892 Msa1201810:three_prime_UTR 35.0%
TCATAGTCATCCGATATCAT+CGG + chr8_1:55091236-55091255 Msa1201810:five_prime_UTR 35.0%
TCATAAAAGGCCGATGATAT+CGG - chr8_1:55091249-55091268 None:intergenic 35.0%
!! AAAGAGTTGGTGATCTGATA+TGG + chr8_1:55091304-55091323 Msa1201810:five_prime_UTR 35.0%
AAACCGATCTGGAAGATAAA+GGG - chr8_1:55091551-55091570 None:intergenic 35.0%
TAAACCGATCTGGAAGATAA+AGG - chr8_1:55091552-55091571 None:intergenic 35.0%
!! TTAAACTTCATTTTCTGGGG+TGG + chr8_1:55091569-55091588 Msa1201810:intron 35.0%
!!! TAAACTTCATTTTCTGGGGT+GGG + chr8_1:55091570-55091589 Msa1201810:intron 35.0%
!! CTTTTGATTGGGCTTTACTT+TGG + chr8_1:55091829-55091848 Msa1201810:intron 35.0%
!! TTGGATTTCTAGTTCCAATG+TGG + chr8_1:55091848-55091867 Msa1201810:intron 35.0%
TATTATACAGAAAATGGCGG+CGG + chr8_1:55091968-55091987 Msa1201810:intron 35.0%
CGTAGATGTATTGCAAGAAA+AGG + chr8_1:55092079-55092098 Msa1201810:CDS 35.0%
AGACTCGAAAAAGGAATTAG+AGG + chr8_1:55092139-55092158 Msa1201810:CDS 35.0%
AAAGTCGAAAGCTAGAATCA+TGG + chr8_1:55092208-55092227 Msa1201810:CDS 35.0%
TGTGGAATCAAAAAGTTGGA+TGG + chr8_1:55092257-55092276 Msa1201810:CDS 35.0%
GTGGAATCAAAAAGTTGGAT+GGG + chr8_1:55092258-55092277 Msa1201810:CDS 35.0%
TGGAATCAAAAAGTTGGATG+GGG + chr8_1:55092259-55092278 Msa1201810:CDS 35.0%
!! TAGGACTTGTTGACAAAGAA+GGG + chr8_1:55092282-55092301 Msa1201810:CDS 35.0%
GATACTAAACTCTGTTCAGA+TGG + chr8_1:55092433-55092452 Msa1201810:CDS 35.0%
!!! TGTGAAAAGGGTTTTATTGG+CGG + chr8_1:55092478-55092497 Msa1201810:CDS 35.0%
GTCTATGAAATTAGAGGAGA+TGG + chr8_1:55092583-55092602 Msa1201810:CDS 35.0%
TTAGTAGTCTAATCACAGTG+AGG + chr8_1:55092762-55092781 Msa1201810:CDS 35.0%
TAGTAGTCTAATCACAGTGA+GGG + chr8_1:55092763-55092782 Msa1201810:CDS 35.0%
!! AGTTTGGAATTGCTTTTCTG+AGG - chr8_1:55092801-55092820 None:intergenic 35.0%
CAAACAGCTTCTCAATAGTT+TGG - chr8_1:55092817-55092836 None:intergenic 35.0%
CTATTGAGAAGCTGTTTGAA+CGG + chr8_1:55092819-55092838 Msa1201810:CDS 35.0%
CAAGTGTCTTGACTATTATC+TGG + chr8_1:55092873-55092892 Msa1201810:three_prime_UTR 35.0%
ACTTTACTCGAGGGAAAGAT+AGG + chr8_1:55091357-55091376 Msa1201810:five_prime_UTR 40.0%
GTGAAGAAGACGATGATGAA+GGG - chr8_1:55091417-55091436 None:intergenic 40.0%
TGGAAGATAAAGGGTTGAAG+GGG - chr8_1:55091542-55091561 None:intergenic 40.0%
CTGGAAGATAAAGGGTTGAA+GGG - chr8_1:55091543-55091562 None:intergenic 40.0%
TCTGGAAGATAAAGGGTTGA+AGG - chr8_1:55091544-55091563 None:intergenic 40.0%
CAACCCTTTATCTTCCAGAT+CGG + chr8_1:55091545-55091564 Msa1201810:intron 40.0%
AGGTTGTTCAGAAGAAATCC+AGG - chr8_1:55091666-55091685 None:intergenic 40.0%
TCTTCTGAACAACCTTGAAC+TGG + chr8_1:55091671-55091690 Msa1201810:intron 40.0%
ATTATACAGAAAATGGCGGC+GGG + chr8_1:55091969-55091988 Msa1201810:intron 40.0%
GGGTGAAGATATTGCATTGT+CGG + chr8_1:55091989-55092008 Msa1201810:CDS 40.0%
GGTGAAGATATTGCATTGTC+GGG + chr8_1:55091990-55092009 Msa1201810:CDS 40.0%
TCAATCATGTGATACGTGGA+AGG + chr8_1:55092031-55092050 Msa1201810:CDS 40.0%
GCAATACATCTACGTGAGAT+TGG - chr8_1:55092073-55092092 None:intergenic 40.0%
TTCAGAGGAAGACTCGAAAA+AGG + chr8_1:55092130-55092149 Msa1201810:CDS 40.0%
GTCGTGTGGAATCAAAAAGT+TGG + chr8_1:55092253-55092272 Msa1201810:CDS 40.0%
ATCAAAAAGTTGGATGGGGT+AGG + chr8_1:55092263-55092282 Msa1201810:CDS 40.0%
!! GTAGGACTTGTTGACAAAGA+AGG + chr8_1:55092281-55092300 Msa1201810:CDS 40.0%
!! AGGACTTGTTGACAAAGAAG+GGG + chr8_1:55092283-55092302 Msa1201810:CDS 40.0%
TTCCTAGACCAATCCGATAA+CGG - chr8_1:55092311-55092330 None:intergenic 40.0%
ATAGGAATTAGCCGTCATCA+AGG + chr8_1:55092374-55092393 Msa1201810:CDS 40.0%
CGTCTAACAAACCTTGATGA+CGG - chr8_1:55092388-55092407 None:intergenic 40.0%
!! TCAAGGTTTGTTAGACGAAC+AGG + chr8_1:55092391-55092410 Msa1201810:CDS 40.0%
GAACAGGACGCTGTTTATAT+AGG + chr8_1:55092407-55092426 Msa1201810:CDS 40.0%
TGATGGAAGCTCTTGTGAAA+AGG + chr8_1:55092465-55092484 Msa1201810:CDS 40.0%
GATGGAAGCTCTTGTGAAAA+GGG + chr8_1:55092466-55092485 Msa1201810:CDS 40.0%
!!! AAGGGTTTTATTGGCGGAAT+CGG + chr8_1:55092484-55092503 Msa1201810:CDS 40.0%
ATCGGAAACTGCACTTGAAA+AGG + chr8_1:55092502-55092521 Msa1201810:CDS 40.0%
GGAAAAAGTGAGTTTAGGTC+AGG + chr8_1:55092523-55092542 Msa1201810:CDS 40.0%
! TTTTTCGTTTGACCTAGTCG+TGG + chr8_1:55092913-55092932 Msa1201810:three_prime_UTR 40.0%
ACTTTACTCGAGGGAAAGAT+AGG + chr8_1:55091357-55091376 Msa1201810:five_prime_UTR 40.0%
GTGAAGAAGACGATGATGAA+GGG - chr8_1:55091417-55091436 None:intergenic 40.0%
TGGAAGATAAAGGGTTGAAG+GGG - chr8_1:55091542-55091561 None:intergenic 40.0%
CTGGAAGATAAAGGGTTGAA+GGG - chr8_1:55091543-55091562 None:intergenic 40.0%
TCTGGAAGATAAAGGGTTGA+AGG - chr8_1:55091544-55091563 None:intergenic 40.0%
CAACCCTTTATCTTCCAGAT+CGG + chr8_1:55091545-55091564 Msa1201810:intron 40.0%
AGGTTGTTCAGAAGAAATCC+AGG - chr8_1:55091666-55091685 None:intergenic 40.0%
TCTTCTGAACAACCTTGAAC+TGG + chr8_1:55091671-55091690 Msa1201810:intron 40.0%
ATTATACAGAAAATGGCGGC+GGG + chr8_1:55091969-55091988 Msa1201810:intron 40.0%
GGGTGAAGATATTGCATTGT+CGG + chr8_1:55091989-55092008 Msa1201810:CDS 40.0%
GGTGAAGATATTGCATTGTC+GGG + chr8_1:55091990-55092009 Msa1201810:CDS 40.0%
TCAATCATGTGATACGTGGA+AGG + chr8_1:55092031-55092050 Msa1201810:CDS 40.0%
GCAATACATCTACGTGAGAT+TGG - chr8_1:55092073-55092092 None:intergenic 40.0%
TTCAGAGGAAGACTCGAAAA+AGG + chr8_1:55092130-55092149 Msa1201810:CDS 40.0%
GTCGTGTGGAATCAAAAAGT+TGG + chr8_1:55092253-55092272 Msa1201810:CDS 40.0%
ATCAAAAAGTTGGATGGGGT+AGG + chr8_1:55092263-55092282 Msa1201810:CDS 40.0%
!! GTAGGACTTGTTGACAAAGA+AGG + chr8_1:55092281-55092300 Msa1201810:CDS 40.0%
!! AGGACTTGTTGACAAAGAAG+GGG + chr8_1:55092283-55092302 Msa1201810:CDS 40.0%
TTCCTAGACCAATCCGATAA+CGG - chr8_1:55092311-55092330 None:intergenic 40.0%
ATAGGAATTAGCCGTCATCA+AGG + chr8_1:55092374-55092393 Msa1201810:CDS 40.0%
CGTCTAACAAACCTTGATGA+CGG - chr8_1:55092388-55092407 None:intergenic 40.0%
!! TCAAGGTTTGTTAGACGAAC+AGG + chr8_1:55092391-55092410 Msa1201810:CDS 40.0%
GAACAGGACGCTGTTTATAT+AGG + chr8_1:55092407-55092426 Msa1201810:CDS 40.0%
TGATGGAAGCTCTTGTGAAA+AGG + chr8_1:55092465-55092484 Msa1201810:CDS 40.0%
GATGGAAGCTCTTGTGAAAA+GGG + chr8_1:55092466-55092485 Msa1201810:CDS 40.0%
!!! AAGGGTTTTATTGGCGGAAT+CGG + chr8_1:55092484-55092503 Msa1201810:CDS 40.0%
ATCGGAAACTGCACTTGAAA+AGG + chr8_1:55092502-55092521 Msa1201810:CDS 40.0%
GGAAAAAGTGAGTTTAGGTC+AGG + chr8_1:55092523-55092542 Msa1201810:CDS 40.0%
! TTTTTCGTTTGACCTAGTCG+TGG + chr8_1:55092913-55092932 Msa1201810:three_prime_UTR 40.0%
AAGAAGACGATGATGAAGGG+TGG - chr8_1:55091414-55091433 None:intergenic 45.0%
GGTGAAGAAGACGATGATGA+AGG - chr8_1:55091418-55091437 None:intergenic 45.0%
AGAGAGAGAGAACCTGAGAA+GGG - chr8_1:55091439-55091458 None:intergenic 45.0%
TAGAGAGAGAGAACCTGAGA+AGG - chr8_1:55091440-55091459 None:intergenic 45.0%
TCATGTGATACGTGGAAGGA+AGG + chr8_1:55092035-55092054 Msa1201810:CDS 45.0%
CATGTGATACGTGGAAGGAA+GGG + chr8_1:55092036-55092055 Msa1201810:CDS 45.0%
TGAGATCAAGGCGAGTATAC+AGG + chr8_1:55092106-55092125 Msa1201810:CDS 45.0%
GAGATCAAGGCGAGTATACA+GGG + chr8_1:55092107-55092126 Msa1201810:CDS 45.0%
TCCTAGACCAATCCGATAAC+GGG - chr8_1:55092310-55092329 None:intergenic 45.0%
ATGACGAAGATGCAGAATCG+TGG + chr8_1:55092351-55092370 Msa1201810:CDS 45.0%
GAAGATGCAGAATCGTGGAT+AGG + chr8_1:55092356-55092375 Msa1201810:CDS 45.0%
TCAGATGGTCACTGATGTGA+TGG + chr8_1:55092448-55092467 Msa1201810:CDS 45.0%
GCAAAGAGTTGCGGATTTGA+TGG + chr8_1:55092649-55092668 Msa1201810:CDS 45.0%
AGAGCTTAGTCGAGTGAAAC+AGG + chr8_1:55092715-55092734 Msa1201810:CDS 45.0%
AAGAAGACGATGATGAAGGG+TGG - chr8_1:55091414-55091433 None:intergenic 45.0%
GGTGAAGAAGACGATGATGA+AGG - chr8_1:55091418-55091437 None:intergenic 45.0%
AGAGAGAGAGAACCTGAGAA+GGG - chr8_1:55091439-55091458 None:intergenic 45.0%
TAGAGAGAGAGAACCTGAGA+AGG - chr8_1:55091440-55091459 None:intergenic 45.0%
TCATGTGATACGTGGAAGGA+AGG + chr8_1:55092035-55092054 Msa1201810:CDS 45.0%
CATGTGATACGTGGAAGGAA+GGG + chr8_1:55092036-55092055 Msa1201810:CDS 45.0%
TGAGATCAAGGCGAGTATAC+AGG + chr8_1:55092106-55092125 Msa1201810:CDS 45.0%
GAGATCAAGGCGAGTATACA+GGG + chr8_1:55092107-55092126 Msa1201810:CDS 45.0%
TCCTAGACCAATCCGATAAC+GGG - chr8_1:55092310-55092329 None:intergenic 45.0%
ATGACGAAGATGCAGAATCG+TGG + chr8_1:55092351-55092370 Msa1201810:CDS 45.0%
GAAGATGCAGAATCGTGGAT+AGG + chr8_1:55092356-55092375 Msa1201810:CDS 45.0%
TCAGATGGTCACTGATGTGA+TGG + chr8_1:55092448-55092467 Msa1201810:CDS 45.0%
GCAAAGAGTTGCGGATTTGA+TGG + chr8_1:55092649-55092668 Msa1201810:CDS 45.0%
AGAGCTTAGTCGAGTGAAAC+AGG + chr8_1:55092715-55092734 Msa1201810:CDS 45.0%
!! TATACTTTATTATATAATTT+GGG - chr8_1:55091726-55091745 None:intergenic 5.0%
!! ATATACTTTATTATATAATT+TGG - chr8_1:55091727-55091746 None:intergenic 5.0%
!! TATACTTTATTATATAATTT+GGG - chr8_1:55091726-55091745 None:intergenic 5.0%
!! ATATACTTTATTATATAATT+TGG - chr8_1:55091727-55091746 None:intergenic 5.0%
TCGTCTTCTTCACCCTTCTC+AGG + chr8_1:55091424-55091443 Msa1201810:five_prime_UTR 50.0%
! GTCGGGTTTGAAGTCTCTGT+CGG + chr8_1:55092007-55092026 Msa1201810:CDS 50.0%
! TCGGGTTTGAAGTCTCTGTC+GGG + chr8_1:55092008-55092027 Msa1201810:CDS 50.0%
CGGGTCAATCATGTGATACG+TGG + chr8_1:55092027-55092046 Msa1201810:CDS 50.0%
TGATACGTGGAAGGAAGGGA+TGG + chr8_1:55092040-55092059 Msa1201810:CDS 50.0%
CAAAGAAGGGGTCCCGTTAT+CGG + chr8_1:55092295-55092314 Msa1201810:CDS 50.0%
!! TCCCGTTATCGGATTGGTCT+AGG + chr8_1:55092306-55092325 Msa1201810:CDS 50.0%
!! GGAGATGGAGCGTTTTGCTT+CGG + chr8_1:55092598-55092617 Msa1201810:CDS 50.0%
!! GAGATGGAGCGTTTTGCTTC+GGG + chr8_1:55092599-55092618 Msa1201810:CDS 50.0%
CGATATGCGGCAAAGAGTTG+CGG + chr8_1:55092640-55092659 Msa1201810:CDS 50.0%
TTCGTTTGACCTAGTCGTGG+TGG + chr8_1:55092916-55092935 Msa1201810:three_prime_UTR 50.0%
! GGAAGTATACCACCACGACT+AGG - chr8_1:55092928-55092947 None:intergenic 50.0%
TCGTCTTCTTCACCCTTCTC+AGG + chr8_1:55091424-55091443 Msa1201810:five_prime_UTR 50.0%
! GTCGGGTTTGAAGTCTCTGT+CGG + chr8_1:55092007-55092026 Msa1201810:CDS 50.0%
! TCGGGTTTGAAGTCTCTGTC+GGG + chr8_1:55092008-55092027 Msa1201810:CDS 50.0%
CGGGTCAATCATGTGATACG+TGG + chr8_1:55092027-55092046 Msa1201810:CDS 50.0%
TGATACGTGGAAGGAAGGGA+TGG + chr8_1:55092040-55092059 Msa1201810:CDS 50.0%
CAAAGAAGGGGTCCCGTTAT+CGG + chr8_1:55092295-55092314 Msa1201810:CDS 50.0%
!! TCCCGTTATCGGATTGGTCT+AGG + chr8_1:55092306-55092325 Msa1201810:CDS 50.0%
!! GGAGATGGAGCGTTTTGCTT+CGG + chr8_1:55092598-55092617 Msa1201810:CDS 50.0%
!! GAGATGGAGCGTTTTGCTTC+GGG + chr8_1:55092599-55092618 Msa1201810:CDS 50.0%
CGATATGCGGCAAAGAGTTG+CGG + chr8_1:55092640-55092659 Msa1201810:CDS 50.0%
TTCGTTTGACCTAGTCGTGG+TGG + chr8_1:55092916-55092935 Msa1201810:three_prime_UTR 50.0%
! GGAAGTATACCACCACGACT+AGG - chr8_1:55092928-55092947 None:intergenic 50.0%
CGATGATGAAGGGTGGATCG+TGG - chr8_1:55091407-55091426 None:intergenic 55.0%
GGCGAGTATACAGGGTTCAG+AGG + chr8_1:55092115-55092134 Msa1201810:CDS 55.0%
CACGACGTCTGCGCTAAATG+AGG - chr8_1:55092239-55092258 None:intergenic 55.0%
CATTTAGCGCAGACGTCGTG+TGG + chr8_1:55092239-55092258 Msa1201810:CDS 55.0%
AAGGGGTCCCGTTATCGGAT+TGG + chr8_1:55092300-55092319 Msa1201810:CDS 55.0%
CGATGATGAAGGGTGGATCG+TGG - chr8_1:55091407-55091426 None:intergenic 55.0%
GGCGAGTATACAGGGTTCAG+AGG + chr8_1:55092115-55092134 Msa1201810:CDS 55.0%
CACGACGTCTGCGCTAAATG+AGG - chr8_1:55092239-55092258 None:intergenic 55.0%
CATTTAGCGCAGACGTCGTG+TGG + chr8_1:55092239-55092258 Msa1201810:CDS 55.0%
AAGGGGTCCCGTTATCGGAT+TGG + chr8_1:55092300-55092319 Msa1201810:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55091227 55092981 55091227 ID=Msa1201810;Name=Msa1201810
chr8_1 mRNA 55091227 55092981 55091227 ID=Msa1201810-mRNA-1;Parent=Msa1201810;Name=Msa1201810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=222|1|1|1|0|0|2|137|287
chr8_1 exon 55091227 55091445 55091227 ID=Msa1201810-mRNA-1:exon:17816;Parent=Msa1201810-mRNA-1
chr8_1 exon 55091978 55092981 55091978 ID=Msa1201810-mRNA-1:exon:17817;Parent=Msa1201810-mRNA-1
chr8_1 five_prime_UTR 55091227 55091445 55091227 ID=Msa1201810-mRNA-1:five_prime_utr;Parent=Msa1201810-mRNA-1
chr8_1 five_prime_UTR 55091978 55091980 55091978 ID=Msa1201810-mRNA-1:five_prime_utr;Parent=Msa1201810-mRNA-1
chr8_1 CDS 55091981 55092844 55091981 ID=Msa1201810-mRNA-1:cds;Parent=Msa1201810-mRNA-1
chr8_1 three_prime_UTR 55092845 55092981 55092845 ID=Msa1201810-mRNA-1:three_prime_utr;Parent=Msa1201810-mRNA-1
Gene Sequence

>Msa1201810

ATGGCGGCGGGTGAAGATATTGCATTGTCGGGTTTGAAGTCTCTGTCGGGTCAATCATGTGATACGTGGAAGGAAGGGATGGAGAGAAACCAATCTCACGTAGATGTATTGCAAGAAAAGGTTAATGAGATCAAGGCGAGTATACAGGGTTCAGAGGAAGACTCGAAAAAGGAATTAGAGGTTTTGTGGAGAAGAGTTAAGACTACTGCTACGTTGCTGACGTACTTAAAGTCGAAAGCTAGAATCATGGCTATTCCTCATTTAGCGCAGACGTCGTGTGGAATCAAAAAGTTGGATGGGGTAGGACTTGTTGACAAAGAAGGGGTCCCGTTATCGGATTGGTCTAGGAATGTTGATCTTTCTTCGTTTGATGACGAAGATGCAGAATCGTGGATAGGAATTAGCCGTCATCAAGGTTTGTTAGACGAACAGGACGCTGTTTATATAGGTGAGATACTAAACTCTGTTCAGATGGTCACTGATGTGATGGAAGCTCTTGTGAAAAGGGTTTTATTGGCGGAATCGGAAACTGCACTTGAAAAGGAAAAAGTGAGTTTAGGTCAGGAAAAAATTATGCTAAAGTCTGCTCAGTTAGAGAACATGTCTATGAAATTAGAGGAGATGGAGCGTTTTGCTTCGGGTACAAATAGTATTTTGAACGATATGCGGCAAAGAGTTGCGGATTTGATGGAAGAAACAACTAGACAGAGAGAGCGAGCTGCTGAAAATGAAGAAGAGCTTAGTCGAGTGAAACAGGAATTTGTTTCTCTCAAGTCATATGTTAGTAGTCTAATCACAGTGAGGGAAACTTTACTATCCTCAGAAAAGCAATTCCAAACTATTGAGAAGCTGTTTGAACGGTAA

Protein sequence

>Msa1201810

MAAGEDIALSGLKSLSGQSCDTWKEGMERNQSHVDVLQEKVNEIKASIQGSEEDSKKELEVLWRRVKTTATLLTYLKSKARIMAIPHLAQTSCGIKKLDGVGLVDKEGVPLSDWSRNVDLSSFDDEDAESWIGISRHQGLLDEQDAVYIGEILNSVQMVTDVMEALVKRVLLAESETALEKEKVSLGQEKIMLKSAQLENMSMKLEEMERFASGTNSILNDMRQRVADLMEETTRQRERAAENEEELSRVKQEFVSLKSYVSSLITVRETLLSSEKQFQTIEKLFER*