AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0805290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805290 MtrunA17_Chr5g0413131 82.974 464 23 4 1 409 1 463 0.0 764
Msa0805290 MtrunA17_Chr8g0368161 58.929 448 109 8 18 409 20 448 1.61e-173 492
Msa0805290 MtrunA17_Chr4g0058771 54.945 455 137 6 23 409 27 481 2.14e-169 483
Msa0805290 MtrunA17_Chr3g0117271 60.526 380 93 5 86 409 118 496 5.94e-162 464
Msa0805290 MtrunA17_Chr2g0314461 57.403 385 110 4 77 409 24 406 2.10e-152 437
Msa0805290 MtrunA17_Chr3g0129891 55.897 390 141 9 23 408 17 379 1.02e-145 419
Msa0805290 MtrunA17_Chr2g0314471 51.716 408 140 6 57 409 1 406 1.11e-141 409
Msa0805290 MtrunA17_Chr2g0314451 51.478 406 142 5 58 409 1 405 8.40e-138 400
Msa0805290 MtrunA17_Chr8g0368291 47.711 415 155 8 47 409 1 405 8.00e-127 372
Msa0805290 MtrunA17_Chr1g0189961 47.000 400 124 7 98 409 52 451 3.85e-121 359
Msa0805290 MtrunA17_Chr8g0368341 51.652 333 118 5 119 409 4 335 1.60e-112 333
Msa0805290 MtrunA17_Chr8g0380511 46.099 423 138 12 62 408 7 415 5.57e-112 334
Msa0805290 MtrunA17_Chr2g0309251 46.615 384 127 10 102 409 45 426 7.56e-103 311
Msa0805290 MtrunA17_Chr7g0274951 70.619 194 56 1 216 408 246 439 1.37e-98 301
Msa0805290 MtrunA17_Chr7g0274951 32.161 199 122 3 62 248 15 212 7.23e-25 105
Msa0805290 MtrunA17_Chr8g0368181 70.466 193 55 2 218 409 2 193 5.86e-95 283
Msa0805290 MtrunA17_Chr8g0368241 62.264 212 73 2 199 409 209 414 2.20e-92 284
Msa0805290 MtrunA17_Chr8g0368241 53.261 184 78 5 47 228 1 178 6.84e-53 181
Msa0805290 MtrunA17_Chr2g0326371 47.634 317 103 7 148 409 52 360 1.04e-85 265
Msa0805290 MtrunA17_Chr8g0368201 63.212 193 68 3 219 409 129 320 1.24e-83 258
Msa0805290 MtrunA17_Chr8g0368201 60.345 58 22 1 163 220 5 61 1.07e-13 71.6
Msa0805290 MtrunA17_Chr8g0368221 48.443 289 68 4 47 285 1 258 1.97e-80 248
Msa0805290 MtrunA17_Chr8g0368361 54.639 194 86 1 218 409 2 195 2.24e-74 230
Msa0805290 MtrunA17_Chr8g0368281 53.368 193 88 2 218 408 2 194 1.70e-67 213
Msa0805290 MtrunA17_Chr8g0368331 51.031 194 92 3 219 409 93 286 7.09e-67 214
Msa0805290 MtrunA17_Chr8g0368351 54.301 186 66 5 20 204 17 184 2.45e-59 194
Msa0805290 MtrunA17_Chr8g0368231 66.400 125 41 1 286 409 8 132 5.50e-55 178
Msa0805290 MtrunA17_Chr8g0368271 56.962 158 62 3 47 203 1 153 6.44e-54 177
Msa0805290 MtrunA17_Chr1g0151871 35.862 290 137 6 167 409 40 327 8.34e-53 179
Msa0805290 MtrunA17_Chr6g0453411 40.254 236 126 5 177 409 152 375 1.89e-50 174
Msa0805290 MtrunA17_Chr6g0453411 45.652 92 43 3 118 203 8 98 1.60e-15 77.8
Msa0805290 MtrunA17_Chr8g0368261 61.417 127 46 3 285 409 4 129 3.84e-48 160
Msa0805290 MtrunA17_Chr8g0368321 53.020 149 59 3 61 207 7 146 7.67e-45 153
Msa0805290 MtrunA17_Chr8g0368381 56.637 113 49 0 218 330 2 114 5.92e-43 147
Msa0805290 MtrunA17_Chr3g0135401 38.362 232 129 3 177 405 126 346 1.98e-42 152
Msa0805290 MtrunA17_Chr3g0135381 43.077 195 100 4 216 404 243 432 4.82e-41 151
Msa0805290 MtrunA17_Chr3g0135381 46.296 108 51 2 102 203 52 158 2.79e-22 98.6
Msa0805290 MtrunA17_Chr3g0135371 34.524 252 144 5 162 409 201 435 6.90e-40 147
Msa0805290 MtrunA17_Chr3g0135371 39.216 153 80 4 70 215 25 171 2.60e-22 98.2
Msa0805290 MtrunA17_Chr8g0368171 50.685 146 65 3 47 192 1 139 1.58e-38 137
Msa0805290 MtrunA17_Chr3g0135441 37.433 187 105 4 225 404 45 226 1.37e-34 128
Msa0805290 MtrunA17_Chr3g0138811 28.680 394 199 16 67 405 20 386 3.80e-34 130
Msa0805290 MtrunA17_Chr8g0339871 38.889 198 108 8 216 403 43 237 2.88e-30 117
Msa0805290 MtrunA17_Chr8g0391201 37.245 196 112 7 216 403 43 235 3.16e-28 111
Msa0805290 MtrunA17_Chr2g0302691 28.448 348 173 13 116 403 37 368 5.83e-25 105
Msa0805290 MtrunA17_Chr8g0353941 37.433 187 108 6 223 405 1 182 2.00e-24 99.4
Msa0805290 MtrunA17_Chr3g0135431 36.735 196 103 6 62 249 14 196 4.37e-24 103
Msa0805290 MtrunA17_Chr8g0353971 37.647 170 99 5 238 403 4 170 2.25e-22 93.6
Msa0805290 MtrunA17_Chr3g0135451 35.802 162 74 5 62 203 8 159 2.32e-22 94.0
Msa0805290 MtrunA17_Chr2g0302651 35.795 176 102 7 237 403 23 196 2.40e-21 91.3
Msa0805290 MtrunA17_Chr5g0434771 37.931 145 84 5 244 386 24 164 4.00e-18 82.0
Msa0805290 MtrunA17_Chr5g0445181 28.163 245 115 8 149 344 65 297 4.98e-18 84.0
Msa0805290 MtrunA17_Chr8g0353961 39.423 104 58 3 102 201 33 135 4.75e-17 78.2
Msa0805290 MtrunA17_Chr5g0426971 33.077 130 79 3 235 362 90 213 2.83e-14 72.4
Msa0805290 MtrunA17_Chr8g0353931 36.449 107 57 3 102 201 33 135 4.09e-14 70.9
Msa0805290 MtrunA17_Chr8g0368191 41.892 74 42 1 60 133 5 77 2.50e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805290 AT1G23340.2 62.935 402 93 4 64 409 8 409 0.0 515
Msa0805290 AT1G23340.1 62.935 402 93 4 64 409 8 409 0.0 515
Msa0805290 AT1G10750.1 65.435 379 74 4 87 409 90 467 4.03e-179 507
Msa0805290 AT1G70550.1 64.211 380 81 3 85 409 86 465 8.17e-178 504
Msa0805290 AT5G50150.1 62.069 377 87 3 89 409 44 420 5.30e-168 477
Msa0805290 AT5G18460.1 47.619 399 132 8 86 408 32 429 4.48e-121 358
Msa0805290 AT1G55360.1 44.787 422 149 9 61 409 12 422 2.58e-112 336
Msa0805290 AT3G13510.1 45.789 380 133 9 102 409 41 419 8.45e-107 322
Msa0805290 AT5G56530.2 45.119 379 135 8 102 408 42 419 2.47e-103 313
Msa0805290 AT5G56530.1 45.119 379 135 8 102 408 42 419 2.47e-103 313
Msa0805290 AT2G44220.1 41.439 403 167 9 70 409 7 403 5.60e-98 298
Msa0805290 AT2G44210.1 61.735 196 73 1 216 409 220 415 1.68e-86 269
Msa0805290 AT2G44210.1 38.519 135 64 4 102 218 34 167 5.19e-20 91.7
Msa0805290 AT2G44210.2 61.735 196 73 1 216 409 250 445 2.07e-86 270
Msa0805290 AT2G44210.2 32.121 165 63 5 102 218 34 197 2.86e-15 77.8
Msa0805290 AT2G17750.1 38.798 366 157 11 106 408 34 395 2.22e-83 261
Msa0805290 AT3G48230.1 55.224 201 87 3 211 409 174 373 1.66e-71 229
Msa0805290 AT3G48230.1 31.405 121 81 2 101 220 6 125 4.55e-11 64.3
Msa0805290 AT5G19170.1 36.757 370 168 8 94 403 2 365 6.26e-70 226
Msa0805290 AT2G44240.1 36.164 365 171 6 106 409 39 402 1.65e-66 217
Msa0805290 AT1G23340.3 43.262 282 95 6 64 285 8 284 3.44e-63 205
Msa0805290 AT1G70550.2 68.657 134 41 1 85 218 86 218 6.79e-61 199
Msa0805290 AT2G19360.1 44.856 243 116 3 167 408 200 425 1.78e-60 202
Msa0805290 AT2G19360.1 33.862 189 100 7 95 272 34 208 2.37e-22 98.6
Msa0805290 AT2G44250.2 49.010 202 98 4 211 408 125 325 4.17e-57 190
Msa0805290 AT2G20170.1 32.506 403 195 13 64 403 8 396 5.07e-57 192
Msa0805290 AT2G20170.2 32.506 403 195 13 64 403 8 396 5.07e-57 192
Msa0805290 AT5G25960.1 35.171 381 190 10 62 409 1 357 5.11e-57 191
Msa0805290 AT2G44250.1 49.010 202 98 4 211 408 208 408 8.46e-57 192
Msa0805290 AT2G44250.1 52.336 107 42 3 102 203 38 140 8.96e-20 90.9
Msa0805290 AT2G20170.3 33.161 386 198 13 64 403 8 379 3.71e-56 189
Msa0805290 AT1G10750.2 64.394 132 46 1 87 218 90 220 5.90e-56 188
Msa0805290 AT4G23370.1 30.000 400 209 12 70 403 7 401 6.73e-50 174
Msa0805290 AT5G25950.1 42.424 198 109 3 216 409 236 432 7.42e-45 161
Msa0805290 AT5G25950.1 33.679 193 99 6 50 231 8 182 1.33e-15 78.6
Msa0805290 AT4G23390.1 31.111 360 183 11 106 403 41 397 1.02e-44 160
Msa0805290 AT4G23365.1 30.110 362 185 9 105 403 42 398 1.20e-44 160
Msa0805290 AT4G23360.1 30.319 376 188 12 93 403 33 399 4.04e-44 158
Msa0805290 AT4G23355.1 30.208 384 194 11 86 403 23 398 6.35e-43 155
Msa0805290 AT2G35250.1 31.231 333 162 10 123 405 24 339 2.32e-36 136
Msa0805290 AT4G15050.1 29.156 391 186 16 87 403 21 394 5.23e-34 131
Msa0805290 AT4G17505.1 29.653 317 189 12 114 409 18 321 2.83e-32 124
Msa0805290 AT2G27320.1 31.410 312 158 10 106 375 15 312 4.90e-30 118
Msa0805290 AT1G10190.1 28.218 404 203 17 70 403 8 394 2.37e-29 118
Msa0805290 AT4G23380.1 35.714 196 111 7 214 403 212 398 4.51e-28 114
Msa0805290 AT4G23380.1 34.711 121 72 3 92 208 32 149 2.62e-15 77.4
Msa0805290 AT4G23350.1 27.441 379 196 15 93 403 33 400 3.29e-27 112
Msa0805290 AT5G46810.1 27.566 341 182 11 126 403 11 349 2.01e-24 103
Msa0805290 AT5G46820.1 28.070 342 189 13 117 403 8 347 2.97e-24 103
Msa0805290 AT4G23373.1 32.292 192 88 4 106 259 40 227 2.90e-23 99.8
Msa0805290 AT4G10220.1 25.974 385 190 15 89 403 39 398 4.11e-22 97.8
Msa0805290 AT5G25410.1 24.425 348 197 11 110 403 28 363 3.06e-21 94.7
Msa0805290 AT4G23080.1 27.089 395 183 20 89 405 39 406 8.01e-21 94.0
Msa0805290 AT5G05030.1 25.706 354 189 12 110 405 22 359 1.36e-20 92.8
Msa0805290 AT4G17860.1 28.190 337 169 15 126 403 29 351 1.25e-19 90.1
Msa0805290 AT5G60380.1 25.449 334 183 13 126 403 44 367 8.43e-19 87.8
Msa0805290 AT5G46200.1 31.959 194 122 7 216 403 216 405 1.31e-18 87.4
Msa0805290 AT5G25415.1 31.373 204 116 7 216 405 139 332 1.61e-18 86.3
Msa0805290 AT4G10210.1 23.333 390 202 13 47 366 1 363 4.04e-17 82.8
Msa0805290 AT5G11660.1 30.102 196 125 5 216 405 115 304 1.16e-15 77.8
Msa0805290 AT4G15053.1 29.245 212 128 9 203 403 201 401 1.78e-15 78.2
Msa0805290 AT4G15053.1 34.615 130 78 3 70 196 12 137 1.82e-14 75.1
Msa0805290 AT2G38255.1 29.474 190 86 6 126 274 14 196 2.88e-15 75.1
Msa0805290 AT5G04937.1 30.256 195 110 7 216 403 23 198 2.18e-13 69.3
Msa0805290 AT5G37520.1 30.114 176 107 9 235 404 33 198 1.22e-12 67.0
Msa0805290 AT5G36680.1 29.954 217 128 9 204 408 127 331 2.96e-12 67.8
Msa0805290 AT5G36770.1 29.954 217 128 9 204 408 127 331 2.96e-12 67.8
Msa0805290 AT2G24950.1 33.696 92 61 0 102 193 56 147 3.26e-12 68.2

Find 119 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGGTTTAAAAGTGTTAT+TGG 0.175466 5_3:+21786917 None:intergenic
ACCCTAGATTCTTTACTTAT+TGG 0.178065 5_3:-21785017 Msa0805290:CDS
GGAAATTGGTGGCTTGAATT+TGG 0.193828 5_3:-21783674 Msa0805290:CDS
TGATACCCTTGTCAAATCTA+AGG 0.217147 5_3:-21783442 Msa0805290:CDS
TTTGATCATCCTATGTTAAA+AGG 0.226362 5_3:-21786659 Msa0805290:CDS
TACTGACAACTTGAGATTTC+AGG 0.232060 5_3:+21787358 None:intergenic
TTGGAAAAGCATCATACTTT+AGG 0.235413 5_3:-21783496 Msa0805290:CDS
TGTTCCGTTGTTCTTCTAAT+TGG 0.235470 5_3:+21786405 None:intergenic
TGCTACAATTTACTTTGTTC+AGG 0.242779 5_3:-21784821 Msa0805290:CDS
CCTTGTATGTCATAGCAATT+TGG 0.252357 5_3:+21783404 None:intergenic
AGCCACCAATTTCCATGCTT+TGG 0.286320 5_3:+21783683 None:intergenic
TTGATATTAGCTTGCTCATT+TGG 0.296514 5_3:-21784724 Msa0805290:CDS
TCTCCAACTTCTTCATATAC+TGG 0.302096 5_3:-21784755 Msa0805290:CDS
AGGATCCAAAGCATGGAAAT+TGG 0.304845 5_3:-21783688 Msa0805290:CDS
CACTAATCTAGGCATTTATA+AGG 0.305785 5_3:-21787451 Msa0805290:five_prime_UTR
GAAGGGCATTCAAGGTGCTT+GGG 0.313719 5_3:-21783230 Msa0805290:three_prime_UTR
CAAAACCTTCTCCAGCAAAA+TGG 0.320633 5_3:+21783516 None:intergenic
TTAAAAGTGTTATTGGCAAC+AGG 0.326767 5_3:+21786924 None:intergenic
TGAATTTGGGTCCGGAATAT+TGG 0.327218 5_3:-21783660 Msa0805290:CDS
ACCTGAATTGTCTTAATAGA+AGG 0.330187 5_3:+21786840 None:intergenic
AAGGAGGAATAAATAATGTT+TGG 0.330732 5_3:-21783385 Msa0805290:CDS
AGGAGGAATAAATAATGTTT+GGG 0.337415 5_3:-21783384 Msa0805290:CDS
GGACATTTCACATTTCTTCC+TGG 0.340362 5_3:+21783338 None:intergenic
CCTTGCCACAATCAAAATCT+AGG 0.342060 5_3:-21787164 Msa0805290:CDS
CATGCAAGTATGGTACAATT+TGG 0.342749 5_3:-21783596 Msa0805290:CDS
CAGGTCAGCCCTGAGCTCTA+TGG 0.355105 5_3:-21785048 Msa0805290:CDS
GCTAGTTCTATCAATACATT+TGG 0.356680 5_3:-21786369 Msa0805290:CDS
CTAATTGGAATCGTTCCTTC+TGG 0.361497 5_3:+21786420 None:intergenic
GAAATTGGTGGCTTGAATTT+GGG 0.362311 5_3:-21783673 Msa0805290:CDS
ACCTTCTATTAAGACAATTC+AGG 0.364032 5_3:-21786841 Msa0805290:intron
CTTAAGGGATCATGCAAGTA+TGG 0.364508 5_3:-21783606 Msa0805290:CDS
ACCTTGAATGCCCTTCAAAA+AGG 0.366393 5_3:+21783237 None:intergenic
TGAGCAAGCTAATATCAAAT+TGG 0.367290 5_3:+21784729 None:intergenic
TGAAGGGCATTCAAGGTGCT+TGG 0.368886 5_3:-21783231 Msa0805290:three_prime_UTR
GTCCAATAAGTAAAGAATCT+AGG 0.379605 5_3:+21785015 None:intergenic
GGCCTAAAACTCATAACAAC+AGG 0.385123 5_3:-21786494 Msa0805290:CDS
CACGATTTCATCACTAATCT+AGG 0.386465 5_3:-21787462 Msa0805290:five_prime_UTR
CAACGGAACAAGACATGTTA+AGG 0.387654 5_3:-21786392 Msa0805290:CDS
TGTACAAGATTGTAAATGAT+TGG 0.389335 5_3:+21787008 None:intergenic
GAATTTGCAAGTTGTGGATT+GGG 0.390025 5_3:-21783474 Msa0805290:CDS
GTCACACACTTCAACTCAAA+TGG 0.392629 5_3:-21783546 Msa0805290:CDS
TCACGTACATTAAATAATCT+TGG 0.406845 5_3:-21787586 None:intergenic
AACTTGAGATTTCAGGAGTT+GGG 0.407112 5_3:+21787365 None:intergenic
CCAATACCCTACCAATATTC+CGG 0.408965 5_3:+21783649 None:intergenic
AGGTCAGCCCTGAGCTCTAT+GGG 0.413270 5_3:-21785047 Msa0805290:CDS
GGAATTTGCAAGTTGTGGAT+TGG 0.413386 5_3:-21783475 Msa0805290:CDS
TTAAAATACATGAAAGGGTT+GGG 0.417328 5_3:+21787395 None:intergenic
CTCCAACTTCTTCATATACT+GGG 0.426503 5_3:-21784754 Msa0805290:CDS
TTTCAGTTATGGAGCTTATC+GGG 0.430615 5_3:-21786453 Msa0805290:CDS
CAACTTGAGATTTCAGGAGT+TGG 0.438465 5_3:+21787364 None:intergenic
GAGTCAAAACTTGTAAAACT+TGG 0.444115 5_3:+21787328 None:intergenic
ACTAACAATAAAATTGCAAT+TGG 0.449628 5_3:-21784788 Msa0805290:CDS
AGTGATGCATATCAAGCAAC+TGG 0.451463 5_3:-21784845 Msa0805290:CDS
TGGTGGCTTGAATTTGGGTC+CGG 0.451727 5_3:-21783668 Msa0805290:CDS
CTTTAGGAATTTGCAAGTTG+TGG 0.454834 5_3:-21783480 Msa0805290:CDS
ATTCTATAGTATAGCTTTGG+TGG 0.455116 5_3:-21787199 Msa0805290:five_prime_UTR
TATATTCTATAGTATAGCTT+TGG 0.456053 5_3:-21787202 Msa0805290:five_prime_UTR
TGCAGTAATGGTATAATCAA+TGG 0.458539 5_3:+21783132 None:intergenic
ATTAAAATACATGAAAGGGT+TGG 0.461693 5_3:+21787394 None:intergenic
AAATATATGTTGAATTTCAA+AGG 0.465479 5_3:+21787548 None:intergenic
CCGGAATATTGGTAGGGTAT+TGG 0.467009 5_3:-21783649 Msa0805290:CDS
GCTACAATTTACTTTGTTCA+GGG 0.468873 5_3:-21784820 Msa0805290:CDS
TAACTGTCCCCATAGAGCTC+AGG 0.469376 5_3:+21785039 None:intergenic
AAGAACAAATCCTAATCAAA+AGG 0.479596 5_3:+21783177 None:intergenic
TCCAATAAGTAAAGAATCTA+GGG 0.480244 5_3:+21785016 None:intergenic
AACATAGGATGATCAAAAGC+TGG 0.480414 5_3:+21786665 None:intergenic
GATGATTAAAATACATGAAA+GGG 0.482433 5_3:+21787390 None:intergenic
GAAAGGAAAATTCTCAAGCA+TGG 0.493123 5_3:-21787054 Msa0805290:CDS
ACTAATCTAGGCATTTATAA+GGG 0.499819 5_3:-21787450 Msa0805290:five_prime_UTR
TCAATGTGAACTACTTCAAA+CGG 0.503736 5_3:-21787096 Msa0805290:CDS
TATTAGCTTGCTCATTTGGA+AGG 0.505252 5_3:-21784720 Msa0805290:intron
GGATGATTAAAATACATGAA+AGG 0.505297 5_3:+21787389 None:intergenic
AATTTATAGGAGTGTGTACA+AGG 0.510075 5_3:+21787496 None:intergenic
GATACCCTTGTCAAATCTAA+GGG 0.511589 5_3:-21783441 Msa0805290:CDS
TAGGAGTGTGTACAAGGGAA+GGG 0.517712 5_3:+21787502 None:intergenic
AGTCAAAACTTGTAAAACTT+GGG 0.532346 5_3:+21787329 None:intergenic
AACGGAACAAGACATGTTAA+GGG 0.533255 5_3:-21786391 Msa0805290:CDS
CATAAGAGTCCATGCAGTAA+TGG 0.534353 5_3:+21783120 None:intergenic
TCACACACTTCAACTCAAAT+GGG 0.534918 5_3:-21783545 Msa0805290:CDS
AGAAATGTGAAATGTCCCTA+AGG 0.537968 5_3:-21783332 Msa0805290:exon
AAGGGCATTCAAGGTGCTTG+GGG 0.539760 5_3:-21783229 Msa0805290:three_prime_UTR
CATTCTATAATATCACCATC+AGG 0.545908 5_3:+21786707 None:intergenic
GCAAGTATGGTACAATTTGG+TGG 0.547559 5_3:-21783593 Msa0805290:CDS
AATTATATACTATGCTTCCA+AGG 0.549037 5_3:-21787279 Msa0805290:five_prime_UTR
TTTGGGTCCGGAATATTGGT+AGG 0.551957 5_3:-21783656 Msa0805290:CDS
CCAAATTGCTATGACATACA+AGG 0.552229 5_3:-21783404 Msa0805290:CDS
AACTGTCCCCATAGAGCTCA+GGG 0.555050 5_3:+21785040 None:intergenic
ATAGGAGTGTGTACAAGGGA+AGG 0.556665 5_3:+21787501 None:intergenic
TAGATTCTTTACTTATTGGA+CGG 0.561026 5_3:-21785013 Msa0805290:intron
TCCAACTTCTTCATATACTG+GGG 0.571043 5_3:-21784753 Msa0805290:CDS
TATAAGGGCTCCAACCCACA+TGG 0.577082 5_3:-21787435 Msa0805290:five_prime_UTR
TTGAGATTTCAGGAGTTGGG+TGG 0.581661 5_3:+21787368 None:intergenic
ATCCAAAGCATGGAAATTGG+TGG 0.585312 5_3:-21783685 Msa0805290:CDS
TCTTCAATAGAAACAAAGAA+AGG 0.586169 5_3:-21787071 Msa0805290:CDS
GGAGGAATAAATAATGTTTG+GGG 0.587413 5_3:-21783383 Msa0805290:CDS
CACAAATAGCAATGGACATG+AGG 0.590650 5_3:-21786316 Msa0805290:intron
GTGTGCAGGATCCTCCAGAA+AGG 0.596318 5_3:-21786515 Msa0805290:intron
AGGAGTGTGTACAAGGGAAG+GGG 0.599342 5_3:+21787503 None:intergenic
TTGATTATACCATTACTGCA+TGG 0.602877 5_3:-21783129 Msa0805290:three_prime_UTR
TTGGGTCCGGAATATTGGTA+GGG 0.608291 5_3:-21783655 Msa0805290:CDS
GAAATGTGAAATGTCCCTAA+GGG 0.609542 5_3:-21783331 Msa0805290:exon
TAAAAGTGTTATTGGCAACA+GGG 0.614146 5_3:+21786925 None:intergenic
TAGAACCCTTAGATTTGACA+AGG 0.625722 5_3:+21783436 None:intergenic
ACTTCAACTCAAATGGGTAG+TGG 0.626407 5_3:-21783539 Msa0805290:CDS
AGAAGAGACACAAATAGCAA+TGG 0.629086 5_3:-21786324 Msa0805290:CDS
GTTAAAAGGACAAAGACCAC+TGG 0.629673 5_3:-21786645 Msa0805290:intron
TCGGGAGAATCATGTCCAGA+AGG 0.639107 5_3:-21786435 Msa0805290:CDS
GTCAAATCTAAGGGTTCTAG+CGG 0.646768 5_3:-21783432 Msa0805290:CDS
ATTTATAGGAGTGTGTACAA+GGG 0.650243 5_3:+21787497 None:intergenic
GAAATTGTGAATTCAAGACA+AGG 0.660538 5_3:-21783569 Msa0805290:CDS
ATAAGGGCTCCAACCCACAT+GGG 0.662992 5_3:-21787434 Msa0805290:five_prime_UTR
GAGGAATAAATAATGTTTGG+GGG 0.669410 5_3:-21783382 Msa0805290:CDS
CCAACTTCTTCATATACTGG+GGG 0.674996 5_3:-21784752 Msa0805290:CDS
GATTCCAATTAGAAGAACAA+CGG 0.689854 5_3:-21786409 Msa0805290:CDS
GCCTAAAACTCATAACAACA+GGG 0.692904 5_3:-21786493 Msa0805290:CDS
GGTCAGCCCTGAGCTCTATG+GGG 0.696304 5_3:-21785046 Msa0805290:CDS
AGAACCCTTAGATTTGACAA+GGG 0.704158 5_3:+21783437 None:intergenic
AAATTGTGAATTCAAGACAA+GGG 0.714404 5_3:-21783568 Msa0805290:CDS
AATTGCTATGACATACAAGG+AGG 0.724912 5_3:-21783401 Msa0805290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATATTTTTTATAG+TGG - chr5_3:21786019-21786038 Msa0805290:intron 10.0%
!!! TTGTTATACTATTTTTTTTT+AGG - chr5_3:21786945-21786964 Msa0805290:CDS 10.0%
!! AAATATATGTTGAATTTCAA+AGG + chr5_3:21783108-21783127 None:intergenic 15.0%
!! TGCTAAGTTTAAAAATTTAT+AGG + chr5_3:21783173-21783192 None:intergenic 15.0%
!! TATGTATAAGTTAAGATATA+AGG - chr5_3:21784073-21784092 Msa0805290:intron 15.0%
!! ATGTATAAGTTAAGATATAA+GGG - chr5_3:21784074-21784093 Msa0805290:intron 15.0%
!!! TATTTCAAGTTTGATTTTTT+TGG + chr5_3:21784771-21784790 None:intergenic 15.0%
!!! ATCATTTTGAATATAGTTTA+AGG + chr5_3:21784855-21784874 None:intergenic 15.0%
!!! TTTTTTAAAATATCGGATAT+CGG + chr5_3:21784945-21784964 None:intergenic 15.0%
!!! AGTATTTTGAATATAATCTA+AGG + chr5_3:21785004-21785023 None:intergenic 15.0%
!! TATACATCAATAAAAATTTG+AGG + chr5_3:21785127-21785146 None:intergenic 15.0%
!! AGATACAAAAATTAAAAAGA+TGG + chr5_3:21785552-21785571 None:intergenic 15.0%
!! TATAAAACTCAATAAAGAAA+AGG - chr5_3:21785667-21785686 Msa0805290:intron 15.0%
!! ATAAAACTCAATAAAGAAAA+GGG - chr5_3:21785668-21785687 Msa0805290:intron 15.0%
!!! AATTTAGTTTTACTATTGAT+TGG - chr5_3:21786044-21786063 Msa0805290:intron 15.0%
!! TTTATTCACTTTAATACTTT+GGG - chr5_3:21786575-21786594 Msa0805290:intron 15.0%
!!! TGATTTTTTTTTCTTCTTTT+TGG - chr5_3:21787364-21787383 Msa0805290:five_prime_UTR 15.0%
!!! AAATTAAATTCCTTTTGATT+AGG - chr5_3:21787466-21787485 Msa0805290:five_prime_UTR 15.0%
!! GATGATTAAAATACATGAAA+GGG + chr5_3:21783266-21783285 None:intergenic 20.0%
!! AAAAATGAGTATTCTAAGTA+TGG + chr5_3:21783428-21783447 None:intergenic 20.0%
!! TATATTCTATAGTATAGCTT+TGG - chr5_3:21783451-21783470 Msa0805290:CDS 20.0%
!!! AACAATTTTGTTTTTGTAGA+TGG - chr5_3:21783519-21783538 Msa0805290:CDS 20.0%
!! TAAAAAATTTAATCTCACCA+AGG - chr5_3:21784827-21784846 Msa0805290:CDS 20.0%
!! GTACAACAATAAAAACTATT+AGG + chr5_3:21785192-21785211 None:intergenic 20.0%
!!! AATCAATTAAGTTGAAGTAA+TGG + chr5_3:21785398-21785417 None:intergenic 20.0%
!!! AAAAGATGGAGAAAATTTTA+TGG + chr5_3:21785538-21785557 None:intergenic 20.0%
!! ACTAACAATAAAATTGCAAT+TGG - chr5_3:21785865-21785884 Msa0805290:intron 20.0%
!!! TTAATTTGATCCATCAATAT+TGG + chr5_3:21786196-21786215 None:intergenic 20.0%
!!! AATATTGATGGATCAAATTA+AGG - chr5_3:21786195-21786214 Msa0805290:intron 20.0%
!!! ATATTGATGGATCAAATTAA+GGG - chr5_3:21786196-21786215 Msa0805290:intron 20.0%
!! AGTAAAAGATTCATATCAAA+GGG + chr5_3:21786253-21786272 None:intergenic 20.0%
!! TAGTAAAAGATTCATATCAA+AGG + chr5_3:21786254-21786273 None:intergenic 20.0%
!!! TTTGATATGAATCTTTTACT+AGG - chr5_3:21786253-21786272 Msa0805290:intron 20.0%
!! AAATGATTAAAAATGCTCAA+TGG - chr5_3:21786345-21786364 Msa0805290:CDS 20.0%
!! TTCTATATCACAAAATTCAA+TGG + chr5_3:21786403-21786422 None:intergenic 20.0%
!!! TAGAATATTAGAAGAAGTAT+AGG - chr5_3:21786418-21786437 Msa0805290:CDS 20.0%
!!! AGAATATTAGAAGAAGTATA+GGG - chr5_3:21786419-21786438 Msa0805290:CDS 20.0%
!! AAGTATTAAAGTGAATAAAG+TGG + chr5_3:21786574-21786593 None:intergenic 20.0%
!! CTTTATTCACTTTAATACTT+TGG - chr5_3:21786574-21786593 Msa0805290:intron 20.0%
!! CAAAACACAAAAATAACAAA+AGG - chr5_3:21786906-21786925 Msa0805290:CDS 20.0%
! ACTAATCTAGGCATTTATAA+GGG - chr5_3:21783203-21783222 Msa0805290:three_prime_UTR 25.0%
! TTAAAATACATGAAAGGGTT+GGG + chr5_3:21783261-21783280 None:intergenic 25.0%
! ATTAAAATACATGAAAGGGT+TGG + chr5_3:21783262-21783281 None:intergenic 25.0%
! GGATGATTAAAATACATGAA+AGG + chr5_3:21783267-21783286 None:intergenic 25.0%
! AGTCAAAACTTGTAAAACTT+GGG + chr5_3:21783327-21783346 None:intergenic 25.0%
! AATTATATACTATGCTTCCA+AGG - chr5_3:21783374-21783393 Msa0805290:CDS 25.0%
! TCTTCAATAGAAACAAAGAA+AGG - chr5_3:21783582-21783601 Msa0805290:CDS 25.0%
! TGTACAAGATTGTAAATGAT+TGG + chr5_3:21783648-21783667 None:intergenic 25.0%
!!! CTTTGGTTTAAAAGTGTTAT+TGG + chr5_3:21783739-21783758 None:intergenic 25.0%
!! CAATAACACTTTTAAACCAA+AGG - chr5_3:21783737-21783756 Msa0805290:intron 25.0%
!! ATTTTATTCAACTCTTCCTT+TGG + chr5_3:21783756-21783775 None:intergenic 25.0%
!! ATGTTAAAGTTTCATGCTTT+TGG - chr5_3:21783836-21783855 Msa0805290:intron 25.0%
! AAAAAACAGAGTAAAAACAG+AGG + chr5_3:21783872-21783891 None:intergenic 25.0%
!!! AATTTTTTTTAGAGTCCTGA+TGG - chr5_3:21783931-21783950 Msa0805290:intron 25.0%
! TTTGATCATCCTATGTTAAA+AGG - chr5_3:21783994-21784013 Msa0805290:intron 25.0%
! AAACATGAACTTCAATTTCT+TGG + chr5_3:21784399-21784418 None:intergenic 25.0%
!! AACAATAAATCTAGAGTAGT+TGG - chr5_3:21784594-21784613 Msa0805290:intron 25.0%
! TTCTGCAATCACTATAAATA+GGG + chr5_3:21784652-21784671 None:intergenic 25.0%
! ATTCTGCAATCACTATAAAT+AGG + chr5_3:21784653-21784672 None:intergenic 25.0%
!! ATATAATCTAAGGCTACTTA+AGG + chr5_3:21784994-21785013 None:intergenic 25.0%
! TAGAATATAAACACATGTGT+CGG + chr5_3:21785092-21785111 None:intergenic 25.0%
! ACTCTTAAATGCACTATATT+TGG - chr5_3:21785474-21785493 Msa0805290:intron 25.0%
! TCCAATAAGTAAAGAATCTA+GGG + chr5_3:21785640-21785659 None:intergenic 25.0%
! TAGATTCTTTACTTATTGGA+CGG - chr5_3:21785640-21785659 Msa0805290:intron 25.0%
!!! AAGTCTTATAAAACGGATTA+GGG - chr5_3:21786088-21786107 Msa0805290:intron 25.0%
! ACAAAAGTCTTCAAATTTCA+TGG - chr5_3:21786279-21786298 Msa0805290:intron 25.0%
! ATTAAAAATGCTCAATGGTA+GGG - chr5_3:21786350-21786369 Msa0805290:CDS 25.0%
!! GAATATTAGAAGAAGTATAG+GGG - chr5_3:21786420-21786439 Msa0805290:CDS 25.0%
!! GAAGAGAATCTTTAAAAGAA+AGG + chr5_3:21786659-21786678 None:intergenic 25.0%
! AGAATTAGAAACTCTTTGTT+GGG + chr5_3:21786688-21786707 None:intergenic 25.0%
! TGATGAACAAAACTACAAAA+GGG + chr5_3:21786721-21786740 None:intergenic 25.0%
! ATGATGAACAAAACTACAAA+AGG + chr5_3:21786722-21786741 None:intergenic 25.0%
!! AAGGGTATGTACAAAATAAT+GGG + chr5_3:21786771-21786790 None:intergenic 25.0%
!!! GTTTTTGTTTACACACTTAA+GGG - chr5_3:21787032-21787051 Msa0805290:CDS 25.0%
! AAATTGTGAATTCAAGACAA+GGG - chr5_3:21787085-21787104 Msa0805290:CDS 25.0%
! AAGGAGGAATAAATAATGTT+TGG - chr5_3:21787268-21787287 Msa0805290:five_prime_UTR 25.0%
! AGGAGGAATAAATAATGTTT+GGG - chr5_3:21787269-21787288 Msa0805290:five_prime_UTR 25.0%
!!! TTCTTCTTTTTGGCATTTTT+AGG - chr5_3:21787374-21787393 Msa0805290:five_prime_UTR 25.0%
!!! TTTTTGGCATTTTTAGGTTT+GGG - chr5_3:21787380-21787399 Msa0805290:five_prime_UTR 25.0%
! AAGAACAAATCCTAATCAAA+AGG + chr5_3:21787479-21787498 None:intergenic 25.0%
! ATTTATAGGAGTGTGTACAA+GGG + chr5_3:21783159-21783178 None:intergenic 30.0%
! AATTTATAGGAGTGTGTACA+AGG + chr5_3:21783160-21783179 None:intergenic 30.0%
CACTAATCTAGGCATTTATA+AGG - chr5_3:21783202-21783221 Msa0805290:three_prime_UTR 30.0%
GAGTCAAAACTTGTAAAACT+TGG + chr5_3:21783328-21783347 None:intergenic 30.0%
! TTTCACTATTTTCAATGCCT+TGG + chr5_3:21783394-21783413 None:intergenic 30.0%
!! ATTCTATAGTATAGCTTTGG+TGG - chr5_3:21783454-21783473 Msa0805290:CDS 30.0%
TCAATGTGAACTACTTCAAA+CGG - chr5_3:21783557-21783576 Msa0805290:CDS 30.0%
!! ATTTTTGAGGAGGAAAAAAC+AGG + chr5_3:21783699-21783718 None:intergenic 30.0%
!! TAAAAGTGTTATTGGCAACA+GGG + chr5_3:21783731-21783750 None:intergenic 30.0%
!! TTAAAAGTGTTATTGGCAAC+AGG + chr5_3:21783732-21783751 None:intergenic 30.0%
ACCTTCTATTAAGACAATTC+AGG - chr5_3:21783812-21783831 Msa0805290:intron 30.0%
ACCTGAATTGTCTTAATAGA+AGG + chr5_3:21783816-21783835 None:intergenic 30.0%
CATTCTATAATATCACCATC+AGG + chr5_3:21783949-21783968 None:intergenic 30.0%
ACTCAATTAGAATTTACCAG+TGG + chr5_3:21784027-21784046 None:intergenic 30.0%
! TTTTCAGTTATGGAGCTTAT+CGG - chr5_3:21784199-21784218 Msa0805290:intron 30.0%
GATTCCAATTAGAAGAACAA+CGG - chr5_3:21784244-21784263 Msa0805290:intron 30.0%
!! GCTAGTTCTATCAATACATT+TGG - chr5_3:21784284-21784303 Msa0805290:intron 30.0%
! TAATGTCCATTTGTCTTGTT+TGG - chr5_3:21784543-21784562 Msa0805290:intron 30.0%
TTCATACCAAACAAGACAAA+TGG + chr5_3:21784552-21784571 None:intergenic 30.0%
GGTATGAAAATGAGTATTCA+TGG - chr5_3:21784564-21784583 Msa0805290:intron 30.0%
ATCACTATAAATAGGGCAAA+AGG + chr5_3:21784645-21784664 None:intergenic 30.0%
ATAGTGATTGCAGAATTTCA+TGG - chr5_3:21784657-21784676 Msa0805290:intron 30.0%
! GCTTTGCAAGGAAAAATTTT+AGG - chr5_3:21784804-21784823 Msa0805290:CDS 30.0%
! GAATATAGTTTAAGGTTCCT+TGG + chr5_3:21784847-21784866 None:intergenic 30.0%
TGTCATACGTGCATATATAT+CGG + chr5_3:21784909-21784928 None:intergenic 30.0%
AAATCAATACTATGGAGCAA+AGG - chr5_3:21785237-21785256 Msa0805290:intron 30.0%
! GATGGAGAAAATTTTATGGT+AGG + chr5_3:21785534-21785553 None:intergenic 30.0%
ACCCTAGATTCTTTACTTAT+TGG - chr5_3:21785636-21785655 Msa0805290:intron 30.0%
GTCCAATAAGTAAAGAATCT+AGG + chr5_3:21785641-21785660 None:intergenic 30.0%
TTAACTTACACTTCAAGCAA+AGG + chr5_3:21785729-21785748 None:intergenic 30.0%
TGCTACAATTTACTTTGTTC+AGG - chr5_3:21785832-21785851 Msa0805290:intron 30.0%
GCTACAATTTACTTTGTTCA+GGG - chr5_3:21785833-21785852 Msa0805290:intron 30.0%
TGAGCAAGCTAATATCAAAT+TGG + chr5_3:21785927-21785946 None:intergenic 30.0%
!! TTGATATTAGCTTGCTCATT+TGG - chr5_3:21785929-21785948 Msa0805290:intron 30.0%
! GTCACACAAGTCTTATAAAA+CGG - chr5_3:21786081-21786100 Msa0805290:intron 30.0%
! CAAGTCTTATAAAACGGATT+AGG - chr5_3:21786087-21786106 Msa0805290:intron 30.0%
!! AGTCTTATAAAACGGATTAG+GGG - chr5_3:21786089-21786108 Msa0805290:intron 30.0%
!! TGTTTTGAGCATATACACTT+TGG - chr5_3:21786156-21786175 Msa0805290:intron 30.0%
AATCCAACAACCAATATTGA+TGG - chr5_3:21786183-21786202 Msa0805290:intron 30.0%
GATTAAAAATGCTCAATGGT+AGG - chr5_3:21786349-21786368 Msa0805290:CDS 30.0%
! GTTTGTTACTTCCAAAACAA+TGG + chr5_3:21786379-21786398 None:intergenic 30.0%
GTTCATTATTCGAATTCACT+AGG + chr5_3:21786615-21786634 None:intergenic 30.0%
CAGAATTAGAAACTCTTTGT+TGG + chr5_3:21786689-21786708 None:intergenic 30.0%
! GAAGGGTATGTACAAAATAA+TGG + chr5_3:21786772-21786791 None:intergenic 30.0%
AAAAAGAGGAGTAAGAAAAG+TGG + chr5_3:21786804-21786823 None:intergenic 30.0%
AAGTGAAATGAGTCAAAAAG+AGG + chr5_3:21786818-21786837 None:intergenic 30.0%
!!! TTTTTTTAGGATCCAAAGCA+TGG - chr5_3:21786958-21786977 Msa0805290:CDS 30.0%
AAGTGTGTAAACAAAAACGA+TGG + chr5_3:21787030-21787049 None:intergenic 30.0%
!! CGTTTTTGTTTACACACTTA+AGG - chr5_3:21787031-21787050 Msa0805290:CDS 30.0%
GAAATTGTGAATTCAAGACA+AGG - chr5_3:21787084-21787103 Msa0805290:CDS 30.0%
!! TTGGAAAAGCATCATACTTT+AGG - chr5_3:21787157-21787176 Msa0805290:CDS 30.0%
GGAGGAATAAATAATGTTTG+GGG - chr5_3:21787270-21787289 Msa0805290:five_prime_UTR 30.0%
GAGGAATAAATAATGTTTGG+GGG - chr5_3:21787271-21787290 Msa0805290:five_prime_UTR 30.0%
! TTTTATGCTTCATTCCCTTA+GGG + chr5_3:21787339-21787358 None:intergenic 30.0%
! TTTTTATGCTTCATTCCCTT+AGG + chr5_3:21787340-21787359 None:intergenic 30.0%
!!! CTTTTTGGCATTTTTAGGTT+TGG - chr5_3:21787379-21787398 Msa0805290:five_prime_UTR 30.0%
!!! TTTTTAGGTTTGGGTGATAT+TGG - chr5_3:21787389-21787408 Msa0805290:five_prime_UTR 30.0%
!!! ATATTGGTTCTCCTTTTTGA+AGG - chr5_3:21787405-21787424 Msa0805290:five_prime_UTR 30.0%
!!! TATTGGTTCTCCTTTTTGAA+GGG - chr5_3:21787406-21787425 Msa0805290:five_prime_UTR 30.0%
TGCAGTAATGGTATAATCAA+TGG + chr5_3:21787524-21787543 None:intergenic 30.0%
TTGATTATACCATTACTGCA+TGG - chr5_3:21787524-21787543 Msa0805290:five_prime_UTR 30.0%
CACGATTTCATCACTAATCT+AGG - chr5_3:21783191-21783210 Msa0805290:three_prime_UTR 35.0%
!! TATTCAAGTTTTGCCCATGT+GGG + chr5_3:21783235-21783254 None:intergenic 35.0%
AACTTGAGATTTCAGGAGTT+GGG + chr5_3:21783291-21783310 None:intergenic 35.0%
TACTGACAACTTGAGATTTC+AGG + chr5_3:21783298-21783317 None:intergenic 35.0%
!!! CTAGATTTTGATTGTGGCAA+GGG + chr5_3:21783491-21783510 None:intergenic 35.0%
!!! GTGTTCCTAGATTTTGATTG+TGG + chr5_3:21783497-21783516 None:intergenic 35.0%
GAAAGGAAAATTCTCAAGCA+TGG - chr5_3:21783599-21783618 Msa0805290:CDS 35.0%
!! GTTGTTGTCAATTTTTGAGG+AGG + chr5_3:21783709-21783728 None:intergenic 35.0%
! AGGGTTGTTGTCAATTTTTG+AGG + chr5_3:21783712-21783731 None:intergenic 35.0%
AACATAGGATGATCAAAAGC+TGG + chr5_3:21783991-21784010 None:intergenic 35.0%
! GGTCTTTGTCCTTTTAACAT+AGG + chr5_3:21784006-21784025 None:intergenic 35.0%
! TTATTTTCTTGCATGTGTGC+AGG - chr5_3:21784124-21784143 Msa0805290:intron 35.0%
!!! TTATGAGTTTTAGGCCTTTC+TGG + chr5_3:21784155-21784174 None:intergenic 35.0%
GCCTAAAACTCATAACAACA+GGG - chr5_3:21784160-21784179 Msa0805290:intron 35.0%
! TCCCTGTTGTTATGAGTTTT+AGG + chr5_3:21784164-21784183 None:intergenic 35.0%
TTTCAGTTATGGAGCTTATC+GGG - chr5_3:21784200-21784219 Msa0805290:intron 35.0%
TGTTCCGTTGTTCTTCTAAT+TGG + chr5_3:21784251-21784270 None:intergenic 35.0%
AACGGAACAAGACATGTTAA+GGG - chr5_3:21784262-21784281 Msa0805290:intron 35.0%
AGAAGAGACACAAATAGCAA+TGG - chr5_3:21784329-21784348 Msa0805290:intron 35.0%
ACTATCACATTACCTTGTGT+AGG - chr5_3:21784736-21784755 Msa0805290:CDS 35.0%
CTATCACATTACCTTGTGTA+GGG - chr5_3:21784737-21784756 Msa0805290:CDS 35.0%
! TCTGAAGTGTCACTATTGTA+TGG + chr5_3:21785027-21785046 None:intergenic 35.0%
TGTAGACACCTGACATATAT+CGG + chr5_3:21785069-21785088 None:intergenic 35.0%
GTGACTGGAAATCAATACTA+TGG - chr5_3:21785229-21785248 Msa0805290:intron 35.0%
TCTCCAACTTCTTCATATAC+TGG - chr5_3:21785898-21785917 Msa0805290:intron 35.0%
CTCCAACTTCTTCATATACT+GGG - chr5_3:21785899-21785918 Msa0805290:intron 35.0%
TCCAACTTCTTCATATACTG+GGG - chr5_3:21785900-21785919 Msa0805290:intron 35.0%
!! TATTAGCTTGCTCATTTGGA+AGG - chr5_3:21785933-21785952 Msa0805290:intron 35.0%
! GATCCATCAATATTGGTTGT+TGG + chr5_3:21786189-21786208 None:intergenic 35.0%
CAATCTTCTATCCTTTAGGT+GGG + chr5_3:21786223-21786242 None:intergenic 35.0%
TCAATCTTCTATCCTTTAGG+TGG + chr5_3:21786224-21786243 None:intergenic 35.0%
GGATCAATCTTCTATCCTTT+AGG + chr5_3:21786227-21786246 None:intergenic 35.0%
AAGATTCATATCAAAGGGCA+GGG + chr5_3:21786248-21786267 None:intergenic 35.0%
AAAGATTCATATCAAAGGGC+AGG + chr5_3:21786249-21786268 None:intergenic 35.0%
TTCATGGTCAAAAGCTTCAA+AGG - chr5_3:21786295-21786314 Msa0805290:intron 35.0%
GAAACTCTTTGTTGGGAAAA+AGG + chr5_3:21786681-21786700 None:intergenic 35.0%
AAAAGTGGTGAATGTGTGAA+GGG + chr5_3:21786789-21786808 None:intergenic 35.0%
TGAATAGCATCATGTTAGCT+TGG + chr5_3:21786846-21786865 None:intergenic 35.0%
! GAAATTGGTGGCTTGAATTT+GGG - chr5_3:21786980-21786999 Msa0805290:CDS 35.0%
CATGCAAGTATGGTACAATT+TGG - chr5_3:21787057-21787076 Msa0805290:CDS 35.0%
TCACACACTTCAACTCAAAT+GGG - chr5_3:21787108-21787127 Msa0805290:CDS 35.0%
! CTTTAGGAATTTGCAAGTTG+TGG - chr5_3:21787173-21787192 Msa0805290:CDS 35.0%
GAATTTGCAAGTTGTGGATT+GGG - chr5_3:21787179-21787198 Msa0805290:exon 35.0%
TGATACCCTTGTCAAATCTA+AGG - chr5_3:21787211-21787230 Msa0805290:five_prime_UTR 35.0%
GATACCCTTGTCAAATCTAA+GGG - chr5_3:21787212-21787231 Msa0805290:five_prime_UTR 35.0%
AGAACCCTTAGATTTGACAA+GGG + chr5_3:21787219-21787238 None:intergenic 35.0%
TAGAACCCTTAGATTTGACA+AGG + chr5_3:21787220-21787239 None:intergenic 35.0%
CCTTGTATGTCATAGCAATT+TGG + chr5_3:21787252-21787271 None:intergenic 35.0%
CCAAATTGCTATGACATACA+AGG - chr5_3:21787249-21787268 Msa0805290:five_prime_UTR 35.0%
AATTGCTATGACATACAAGG+AGG - chr5_3:21787252-21787271 Msa0805290:five_prime_UTR 35.0%
!! TGGGGGAATTACTTTTACTA+TGG - chr5_3:21787288-21787307 Msa0805290:five_prime_UTR 35.0%
!! GGGAATTACTTTTACTATGG+TGG - chr5_3:21787291-21787310 Msa0805290:five_prime_UTR 35.0%
AGAAATGTGAAATGTCCCTA+AGG - chr5_3:21787321-21787340 Msa0805290:five_prime_UTR 35.0%
GAAATGTGAAATGTCCCTAA+GGG - chr5_3:21787322-21787341 Msa0805290:five_prime_UTR 35.0%
!! GTATTCAAGTTTTGCCCATG+TGG + chr5_3:21783236-21783255 None:intergenic 40.0%
CAACTTGAGATTTCAGGAGT+TGG + chr5_3:21783292-21783311 None:intergenic 40.0%
!!! CCTAGATTTTGATTGTGGCA+AGG + chr5_3:21783492-21783511 None:intergenic 40.0%
CCTTGCCACAATCAAAATCT+AGG - chr5_3:21783489-21783508 Msa0805290:CDS 40.0%
AGGAGGAAAAAACAGGACAA+AGG + chr5_3:21783692-21783711 None:intergenic 40.0%
GTTAAAAGGACAAAGACCAC+TGG - chr5_3:21784008-21784027 Msa0805290:intron 40.0%
GGCCTAAAACTCATAACAAC+AGG - chr5_3:21784159-21784178 Msa0805290:intron 40.0%
! CGAGCGAGAATTTTCAGTTA+TGG - chr5_3:21784189-21784208 Msa0805290:intron 40.0%
CTAATTGGAATCGTTCCTTC+TGG + chr5_3:21784236-21784255 None:intergenic 40.0%
CAACGGAACAAGACATGTTA+AGG - chr5_3:21784261-21784280 Msa0805290:intron 40.0%
CACAAATAGCAATGGACATG+AGG - chr5_3:21784337-21784356 Msa0805290:intron 40.0%
TGGTTAGATTTCCCTACACA+AGG + chr5_3:21784751-21784770 None:intergenic 40.0%
TGATCACTGACACTTCAGAT+AGG - chr5_3:21784871-21784890 Msa0805290:intron 40.0%
ATAGTGACACTTCAGAGTGA+AGG - chr5_3:21785031-21785050 Msa0805290:CDS 40.0%
ACCTACATCCGATATATGTC+AGG - chr5_3:21785058-21785077 Msa0805290:intron 40.0%
ACCTGACATATATCGGATGT+AGG + chr5_3:21785062-21785081 None:intergenic 40.0%
ATTGTTGTACAGCATGCAGT+TGG - chr5_3:21785202-21785221 Msa0805290:intron 40.0%
AAAGGCTAGCATAAACGTGT+GGG - chr5_3:21785255-21785274 Msa0805290:intron 40.0%
!! ATATTGGTTTGCTACACGTG+GGG + chr5_3:21785281-21785300 None:intergenic 40.0%
!! CATATTGGTTTGCTACACGT+GGG + chr5_3:21785282-21785301 None:intergenic 40.0%
!! TCATATTGGTTTGCTACACG+TGG + chr5_3:21785283-21785302 None:intergenic 40.0%
GGGACAAGCTGAATTCATAT+TGG + chr5_3:21785297-21785316 None:intergenic 40.0%
AATTCAGCTTGTCCCAAATG+TGG - chr5_3:21785302-21785321 Msa0805290:intron 40.0%
ATTCAGCTTGTCCCAAATGT+GGG - chr5_3:21785303-21785322 Msa0805290:intron 40.0%
ACCAGAAATGACCCACATTT+GGG + chr5_3:21785317-21785336 None:intergenic 40.0%
AACCAGAAATGACCCACATT+TGG + chr5_3:21785318-21785337 None:intergenic 40.0%
!! TGGGTCATTTCTGGTTCATT+TGG - chr5_3:21785322-21785341 Msa0805290:intron 40.0%
GATCTCAATACCATTGAAGC+TGG - chr5_3:21785349-21785368 Msa0805290:intron 40.0%
AGTGATGCATATCAAGCAAC+TGG - chr5_3:21785808-21785827 Msa0805290:intron 40.0%
CCAACTTCTTCATATACTGG+GGG - chr5_3:21785901-21785920 Msa0805290:intron 40.0%
AAATTAAGGGTCCCACCTAA+AGG - chr5_3:21786209-21786228 Msa0805290:intron 40.0%
GAAAAGTGGTGAATGTGTGA+AGG + chr5_3:21786790-21786809 None:intergenic 40.0%
! TAGCATCATGTTAGCTTGGT+TGG + chr5_3:21786842-21786861 None:intergenic 40.0%
AGGATCCAAAGCATGGAAAT+TGG - chr5_3:21786965-21786984 Msa0805290:CDS 40.0%
ATCCAAAGCATGGAAATTGG+TGG - chr5_3:21786968-21786987 Msa0805290:CDS 40.0%
! GGAAATTGGTGGCTTGAATT+TGG - chr5_3:21786979-21786998 Msa0805290:CDS 40.0%
TGAATTTGGGTCCGGAATAT+TGG - chr5_3:21786993-21787012 Msa0805290:CDS 40.0%
CCAATACCCTACCAATATTC+CGG + chr5_3:21787007-21787026 None:intergenic 40.0%
CTTAAGGGATCATGCAAGTA+TGG - chr5_3:21787047-21787066 Msa0805290:CDS 40.0%
GCAAGTATGGTACAATTTGG+TGG - chr5_3:21787060-21787079 Msa0805290:CDS 40.0%
GTCACACACTTCAACTCAAA+TGG - chr5_3:21787107-21787126 Msa0805290:CDS 40.0%
ACTTCAACTCAAATGGGTAG+TGG - chr5_3:21787114-21787133 Msa0805290:CDS 40.0%
CAAAACCTTCTCCAGCAAAA+TGG + chr5_3:21787140-21787159 None:intergenic 40.0%
! CATTTTGCTGGAGAAGGTTT+TGG - chr5_3:21787138-21787157 Msa0805290:CDS 40.0%
GGAATTTGCAAGTTGTGGAT+TGG - chr5_3:21787178-21787197 Msa0805290:exon 40.0%
! GTCAAATCTAAGGGTTCTAG+CGG - chr5_3:21787221-21787240 Msa0805290:five_prime_UTR 40.0%
!!! TACTTTTACTATGGTGGACC+AGG - chr5_3:21787297-21787316 Msa0805290:five_prime_UTR 40.0%
GGACATTTCACATTTCTTCC+TGG + chr5_3:21787318-21787337 None:intergenic 40.0%
!!! TCCTTTTTGAAGGGCATTCA+AGG - chr5_3:21787415-21787434 Msa0805290:five_prime_UTR 40.0%
ACCTTGAATGCCCTTCAAAA+AGG + chr5_3:21787419-21787438 None:intergenic 40.0%
CATAAGAGTCCATGCAGTAA+TGG + chr5_3:21787536-21787555 None:intergenic 40.0%
! TAGGAGTGTGTACAAGGGAA+GGG + chr5_3:21783154-21783173 None:intergenic 45.0%
! ATAGGAGTGTGTACAAGGGA+AGG + chr5_3:21783155-21783174 None:intergenic 45.0%
TTGAGATTTCAGGAGTTGGG+TGG + chr5_3:21783288-21783307 None:intergenic 45.0%
!!! TGAGTTTTAGGCCTTTCTGG+AGG + chr5_3:21784152-21784171 None:intergenic 45.0%
AAGCTAGCATGAGCTTTGCA+AGG - chr5_3:21784792-21784811 Msa0805290:CDS 45.0%
CATGCAGTTGGATATGTGAC+TGG - chr5_3:21785214-21785233 Msa0805290:intron 45.0%
CAAAGGCTAGCATAAACGTG+TGG - chr5_3:21785254-21785273 Msa0805290:intron 45.0%
TCCCAAATGTGGGTCATTTC+TGG - chr5_3:21785313-21785332 Msa0805290:intron 45.0%
TCAATACCATTGAAGCTGGC+TGG - chr5_3:21785353-21785372 Msa0805290:intron 45.0%
CCCCCAGTATATGAAGAAGT+TGG + chr5_3:21785904-21785923 None:intergenic 45.0%
! TGGTAGGGTCTCCATTGTTT+TGG - chr5_3:21786365-21786384 Msa0805290:CDS 45.0%
AGCCACCAATTTCCATGCTT+TGG + chr5_3:21786973-21786992 None:intergenic 45.0%
TTTGGGTCCGGAATATTGGT+AGG - chr5_3:21786997-21787016 Msa0805290:CDS 45.0%
TTGGGTCCGGAATATTGGTA+GGG - chr5_3:21786998-21787017 Msa0805290:CDS 45.0%
CCGGAATATTGGTAGGGTAT+TGG - chr5_3:21787004-21787023 Msa0805290:CDS 45.0%
!!! ACATTTTTTTTTTAAAATAT+CGG + chr5_3:21784952-21784971 None:intergenic 5.0%
!!! ATAATTTAAATTAGTTTATT+TGG + chr5_3:21785578-21785597 None:intergenic 5.0%
!!! AATTTAAATTATTTTTTTTC+AGG - chr5_3:21785586-21785605 Msa0805290:intron 5.0%
!! AAAAATATAAAAAAGAAAAT+TGG + chr5_3:21786014-21786033 None:intergenic 5.0%
! AGGAGTGTGTACAAGGGAAG+GGG + chr5_3:21783153-21783172 None:intergenic 50.0%
TATAAGGGCTCCAACCCACA+TGG - chr5_3:21783218-21783237 Msa0805290:three_prime_UTR 50.0%
ATAAGGGCTCCAACCCACAT+GGG - chr5_3:21783219-21783238 Msa0805290:three_prime_UTR 50.0%
! CAAGTTTTGCCCATGTGGGT+TGG + chr5_3:21783231-21783250 None:intergenic 50.0%
TCGGGAGAATCATGTCCAGA+AGG - chr5_3:21784218-21784237 Msa0805290:intron 50.0%
AACTGTCCCCATAGAGCTCA+GGG + chr5_3:21785616-21785635 None:intergenic 50.0%
TAACTGTCCCCATAGAGCTC+AGG + chr5_3:21785617-21785636 None:intergenic 50.0%
TGGTGGCTTGAATTTGGGTC+CGG - chr5_3:21786985-21787004 Msa0805290:CDS 50.0%
!! ATGGGTAGTGGCCATTTTGC+TGG - chr5_3:21787126-21787145 Msa0805290:CDS 50.0%
!! AGTGGCCATTTTGCTGGAGA+AGG - chr5_3:21787132-21787151 Msa0805290:CDS 50.0%
!! TGAAGGGCATTCAAGGTGCT+TGG - chr5_3:21787422-21787441 Msa0805290:five_prime_UTR 50.0%
!! GAAGGGCATTCAAGGTGCTT+GGG - chr5_3:21787423-21787442 Msa0805290:five_prime_UTR 50.0%
!! AAGGGCATTCAAGGTGCTTG+GGG - chr5_3:21787424-21787443 Msa0805290:five_prime_UTR 50.0%
GTGTGCAGGATCCTCCAGAA+AGG - chr5_3:21784138-21784157 Msa0805290:intron 55.0%
TACCATTGAAGCTGGCTGGC+AGG - chr5_3:21785357-21785376 Msa0805290:intron 55.0%
AGGTCAGCCCTGAGCTCTAT+GGG - chr5_3:21785606-21785625 Msa0805290:intron 55.0%
TGCCTGCCAGCCAGCTTCAA+TGG + chr5_3:21785362-21785381 None:intergenic 60.0%
CAGGTCAGCCCTGAGCTCTA+TGG - chr5_3:21785605-21785624 Msa0805290:intron 60.0%
GGTCAGCCCTGAGCTCTATG+GGG - chr5_3:21785607-21785626 Msa0805290:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 21783078 21787597 21783078 ID=Msa0805290;Name=Msa0805290
chr5_3 mRNA 21783078 21787597 21783078 ID=Msa0805290-mRNA-1;Parent=Msa0805290;Name=Msa0805290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=402|0.8|1|1|1|1|6|256|409
chr5_3 exon 21783078 21783708 21783078 ID=Msa0805290-mRNA-1:exon:8727;Parent=Msa0805290-mRNA-1
chr5_3 exon 21784721 21784867 21784721 ID=Msa0805290-mRNA-1:exon:8726;Parent=Msa0805290-mRNA-1
chr5_3 exon 21785014 21785067 21785014 ID=Msa0805290-mRNA-1:exon:8725;Parent=Msa0805290-mRNA-1
chr5_3 exon 21786317 21786529 21786317 ID=Msa0805290-mRNA-1:exon:8724;Parent=Msa0805290-mRNA-1
chr5_3 exon 21786646 21786732 21786646 ID=Msa0805290-mRNA-1:exon:8723;Parent=Msa0805290-mRNA-1
chr5_3 exon 21786842 21787597 21786842 ID=Msa0805290-mRNA-1:exon:8722;Parent=Msa0805290-mRNA-1
chr5_3 five_prime_UTR 21787196 21787597 21787196 ID=Msa0805290-mRNA-1:five_prime_utr;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21786842 21787195 21786842 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21786646 21786732 21786646 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21786317 21786529 21786317 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21785014 21785067 21785014 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21784721 21784867 21784721 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 CDS 21783334 21783708 21783334 ID=Msa0805290-mRNA-1:cds;Parent=Msa0805290-mRNA-1
chr5_3 three_prime_UTR 21783078 21783333 21783078 ID=Msa0805290-mRNA-1:three_prime_utr;Parent=Msa0805290-mRNA-1
Gene Sequence

>Msa0805290

ATGTGTTTCCCTTGCCACAATCAAAATCTAGGAACACACAACAATTTTGTTTTTGTAGATGGAAGAAGAAGACAAGATCAATGTGAACTACTTCAAACGGATTCTTCAATAGAAACAAAGAAAGGAAAATTCTCAAGCATGGATTTTAGCTTGTGTTTGACTTCTCCAATCATTTACAATCTTGTACATTTTCTTCTTGTTTTTTCTTTCCTTTGTCCTGTTTTTTCCTCCTCAAAAATTGACAACAACCCTGTTGCCAATAACACTTTTAAACCAAAGGAAGAGTTGAATAAAATGAATATCATAAGATATCGTCTTCAACAGATCAATAAACCTTCTATTAAGACAATTCAGAGTCCTGATGGTGATATTATAGAATGTGTTGCGTCTCATCAACAACCAGCTTTTGATCATCCTATGTTAAAAGGACAAAGACCACTGGATCCTCCAGAAAGGCCTAAAACTCATAACAACAGGGATGTGTCGAGCGAGAATTTTCAGTTATGGAGCTTATCGGGAGAATCATGTCCAGAAGGAACGATTCCAATTAGAAGAACAACGGAACAAGACATGTTAAGGGCTAGTTCTATCAATACATTTGGAAGAAAATTAAGAAGACGTGTTAGAAGAGACACAAATAGCAATGGACATGAGGTCAGCCCTGAGCTCTATGGGGACAGTTACCCTAGATTCTTTACTTATTGGACGAGTGATGCATATCAAGCAACTGGATGCTACAATTTACTTTGTTCAGGGTTTGTTCAAACTAACAATAAAATTGCAATTGGTGCTGCAATCTCTCCAACTTCTTCATATACTGGGGGCCAATTTGATATTAGCTTGCTCATTTGGAAGGATCCAAAGCATGGAAATTGGTGGCTTGAATTTGGGTCCGGAATATTGGTAGGGTATTGGCCATCGTTTTTGTTTACACACTTAAGGGATCATGCAAGTATGGTACAATTTGGTGGAGAAATTGTGAATTCAAGACAAGGGTCACACACTTCAACTCAAATGGGTAGTGGCCATTTTGCTGGAGAAGGTTTTGGAAAAGCATCATACTTTAGGAATTTGCAAGTTGTGGATTGGGATAACAATTTGATACCCTTGTCAAATCTAAGGGTTCTAGCGGATCATCCAAATTGCTATGACATACAAGGAGGAATAAATAATGTTTGGGGGAATTACTTTTACTATGGTGGACCAGGAAGAAATGTGAAATGTCCCTAA
Protein sequence

>Msa0805290

MCFPCHNQNLGTHNNFVFVDGRRRQDQCELLQTDSSIETKKGKFSSMDFSLCLTSPIIYNLVHFLLVFSFLCPVFSSSKIDNNPVANNTFKPKEELNKMNIIRYRLQQINKPSIKTIQSPDGDIIECVASHQQPAFDHPMLKGQRPLDPPERPKTHNNRDVSSENFQLWSLSGESCPEGTIPIRRTTEQDMLRASSINTFGRKLRRRVRRDTNSNGHEVSPELYGDSYPRFFTYWTSDAYQATGCYNLLCSGFVQTNNKIAIGAAISPTSSYTGGQFDISLLIWKDPKHGNWWLEFGSGILVGYWPSFLFTHLRDHASMVQFGGEIVNSRQGSHTSTQMGSGHFAGEGFGKASYFRNLQVVDWDNNLIPLSNLRVLADHPNCYDIQGGINNVWGNYFYYGGPGRNVKCP*