AlfalfaGEDB | Msa0265200

M. sativa cultivar zhongmu-4 / Msa0265200

KEGG: -
GO: GO:0000166 GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009451 GO:0009628 GO:0009631 GO:0009651 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016070 GO:0017076 GO:0019219 GO:0019222 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034336 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043242 GO:0043244 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0060567 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090351 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265200	XP_003601657.1	91.935	124	8	1	1	124	1	122	1.94e-70	218

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265200	sp\|Q9LIS2\|RBG4_ARATH	59.350	123	45	4	1	122	1	119	5.12e-43	141

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265200	G7JA80	91.935	124	8	1	1	124	1	122	9.28e-71	218

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0114600	Msa0265200	0.832651	8.369165e-56	-8.615850e-47
Msa0184650	Msa0265200	0.808359	3.219934e-50	-8.615850e-47
Msa0223090	Msa0265200	0.801507	8.717197e-49	-8.615850e-47
Msa0223950	Msa0265200	0.966863	1.715833e-126	-8.615850e-47
Msa0265200	Msa0342850	0.833986	3.890103e-56	-8.615850e-47
Msa0265200	Msa0382950	0.827974	1.163266e-54	-8.615850e-47
Msa0265200	Msa0544720	0.820174	7.885481e-53	-8.615850e-47
Msa0265200	Msa0554210	0.815390	9.474690e-52	-8.615850e-47
Msa0265200	Msa0587830	0.811885	5.597795e-51	-8.615850e-47
Msa0265200	Msa0587850	0.815667	8.218679e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265200	MtrunA17_Chr3g0121631	91.935	124	8	1	1	124	1	122	1.79e-74	218
Msa0265200	MtrunA17_Chr4g0061451	52.893	121	52	3	1	116	1	121	2.14e-36	125
Msa0265200	MtrunA17_Chr7g0219021	48.031	127	59	3	1	124	1	123	1.05e-34	120
Msa0265200	MtrunA17_Chr3g0086861	43.511	131	63	3	1	124	1	127	1.30e-30	113
Msa0265200	MtrunA17_Chr7g0219031	46.729	107	54	2	1	104	1	107	5.81e-28	99.8
Msa0265200	MtrunA17_Chr3g0119311	50.588	85	41	1	38	121	36	120	4.11e-26	95.5
Msa0265200	MtrunA17_Chr7g0266751	46.535	101	50	2	25	121	19	119	1.15e-24	92.0
Msa0265200	MtrunA17_Chr4g0035001	51.316	76	36	1	39	113	7	82	1.87e-23	89.4
Msa0265200	MtrunA17_Chr4g0035051	48.684	76	38	1	39	113	9	84	1.23e-22	85.9
Msa0265200	MtrunA17_Chr4g0031091	43.820	89	49	1	28	115	23	111	2.12e-22	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265200	AT3G23830.2	59.350	123	45	4	1	122	1	119	5.21e-44	141
Msa0265200	AT3G23830.1	59.350	123	45	4	1	122	1	119	5.21e-44	141
Msa0265200	AT4G13850.3	60.976	123	43	4	1	122	1	119	8.38e-43	138
Msa0265200	AT4G13850.4	62.393	117	40	3	1	116	1	114	9.91e-43	137
Msa0265200	AT4G13850.2	60.976	123	43	4	1	122	1	119	1.10e-42	138
Msa0265200	AT4G13850.1	60.976	123	43	4	1	122	1	119	1.28e-42	138
Msa0265200	AT5G61030.2	55.462	119	50	2	1	116	1	119	5.72e-40	136
Msa0265200	AT5G61030.1	55.462	119	50	2	1	116	1	119	5.72e-40	136
Msa0265200	AT1G74230.1	53.043	115	50	1	1	115	1	111	3.96e-37	128
Msa0265200	AT5G47320.1	55.172	116	44	3	1	115	1	109	2.29e-33	116

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Find 48 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTGCTTGAAGACATG+TGG	0.718559	2_2:+65432580	None:intergenic
AACCTACGGAGAAGTGGTTG+AGG	0.621999	2_2:-65432502	Msa0265200:CDS
AAGGATGCATTTACAACCTA+CGG	0.532917	2_2:-65432516	Msa0265200:CDS
ACAAGATTGGAAACCTCTTG+AGG	0.658250	2_2:-65432665	Msa0265200:CDS
ACCACCGCCGTAGCCACCTC+CGG	0.444246	2_2:+65432311	None:intergenic
ACTGGAAGATCAAGGGGATT+TGG	0.334462	2_2:-65432456	Msa0265200:CDS
ACTTCAGCACTCTCTATGGA+TGG	0.581897	2_2:-65432402	Msa0265200:CDS
AGAGACACTGGAAGATCAAG+GGG	0.604078	2_2:-65432462	Msa0265200:CDS
AGCACTCTCTATGGATGGAC+AGG	0.475981	2_2:-65432397	Msa0265200:CDS
AGCATGGATGAAACAGGAGG+AGG	0.619418	2_2:+65432615	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGGTTTCTGTAACAAGAT+TGG	-	chr2_2:65432293-65432312	Msa0265200:CDS	35.0%
TAGTTAAGCATGGATGAAAC+AGG	+	chr2_2:65432365-65432384	None:intergenic	35.0%
GATCATCAACATGGTAAGAA+AGG	+	chr2_2:65432427-65432446	None:intergenic	35.0%
TAAGAGACTGATCATCAACA+TGG	+	chr2_2:65432436-65432455	None:intergenic	35.0%
AAGGATGCATTTACAACCTA+CGG	-	chr2_2:65432455-65432474	Msa0265200:CDS	35.0%
ATGGATGGACAGGATTTAAA+TGG	-	chr2_2:65432584-65432603	Msa0265200:CDS	35.0%
TGGATGGACAGGATTTAAAT+GGG	-	chr2_2:65432585-65432604	Msa0265200:CDS	35.0%
ACAAGATTGGAAACCTCTTG+AGG	-	chr2_2:65432306-65432325	Msa0265200:CDS	40.0%
TTAAGCATGGATGAAACAGG+AGG	+	chr2_2:65432362-65432381	None:intergenic	40.0%
ATTTACAACCTACGGAGAAG+TGG	-	chr2_2:65432463-65432482	Msa0265200:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	65432293	65432700	65432293	ID=Msa0265200;Name=Msa0265200
chr2_2	mRNA	65432293	65432700	65432293	ID=Msa0265200-mRNA-1;Parent=Msa0265200;Name=Msa0265200-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|135
chr2_2	exon	65432293	65432700	65432293	ID=Msa0265200-mRNA-1:exon:20592;Parent=Msa0265200-mRNA-1
chr2_2	CDS	65432293	65432700	65432293	ID=Msa0265200-mRNA-1:cds;Parent=Msa0265200-mRNA-1

Gene Sequence

>Msa0265200

ATGGGTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTCAAGCTCCTCCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGGCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTACGGCGGTGGTGGCGGCGGTGGTTGGTGA

Protein sequence

>Msa0265200

MGFCNKIGNLLRQGGTQSTQAPPPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGGGW*