Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818580 | XP_003616680.1 | 98.077 | 208 | 3 | 1 | 1 | 207 | 1 | 208 | 1.02e-143 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818580 | sp|Q9FLE8|Y5986_ARATH | 48.000 | 125 | 54 | 2 | 95 | 208 | 226 | 350 | 1.31e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818580 | G7K278 | 98.077 | 208 | 3 | 1 | 1 | 207 | 1 | 208 | 4.87e-144 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0818580 | -0.820189 | 7.822363e-53 | -8.615850e-47 |
| Msa0643020 | Msa0818580 | 0.804453 | 2.144717e-49 | -8.615850e-47 |
| Msa0682730 | Msa0818580 | 0.801256 | 9.808701e-49 | -8.615850e-47 |
| Msa0818580 | Msa0999590 | -0.813905 | 2.020534e-51 | -8.615850e-47 |
| Msa0818580 | Msa1040730 | 0.817100 | 3.927695e-52 | -8.615850e-47 |
| Msa0818580 | Msa1237260 | -0.804980 | 1.664592e-49 | -8.615850e-47 |
| Msa0818580 | Msa1281370 | 0.801456 | 8.927549e-49 | -8.615850e-47 |
| Msa0818580 | Msa1320530 | 0.824939 | 6.151311e-54 | -8.615850e-47 |
| Msa0547200 | Msa0818580 | 0.800634 | 1.314385e-48 | -8.615850e-47 |
| Msa0601920 | Msa0818580 | 0.818098 | 2.340255e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818580 | MtrunA17_Chr5g0437471 | 98.077 | 208 | 3 | 1 | 1 | 207 | 1 | 208 | 9.37e-148 | 415 |
| Msa0818580 | MtrunA17_Chr3g0113971 | 57.471 | 174 | 65 | 4 | 37 | 207 | 37 | 204 | 2.24e-56 | 183 |
| Msa0818580 | MtrunA17_Chr3g0105871 | 46.597 | 191 | 77 | 4 | 38 | 208 | 18 | 203 | 7.30e-48 | 160 |
| Msa0818580 | MtrunA17_Chr5g0431071 | 42.922 | 219 | 91 | 4 | 20 | 207 | 8 | 223 | 1.76e-44 | 152 |
| Msa0818580 | MtrunA17_Chr5g0439541 | 57.600 | 125 | 50 | 2 | 194 | 317 | 43 | 165 | 1.61e-39 | 141 |
| Msa0818580 | MtrunA17_Chr5g0440281 | 57.364 | 129 | 49 | 2 | 190 | 317 | 42 | 165 | 6.65e-39 | 139 |
| Msa0818580 | MtrunA17_Chr8g0352771 | 54.098 | 122 | 52 | 2 | 91 | 208 | 103 | 224 | 7.50e-36 | 130 |
| Msa0818580 | MtrunA17_Chr7g0256501 | 52.381 | 126 | 58 | 2 | 84 | 207 | 268 | 393 | 1.46e-35 | 133 |
| Msa0818580 | MtrunA17_Chr3g0083531 | 52.991 | 117 | 54 | 1 | 93 | 208 | 114 | 230 | 1.62e-35 | 130 |
| Msa0818580 | MtrunA17_Chr1g0171871 | 52.101 | 119 | 56 | 1 | 90 | 207 | 205 | 323 | 2.09e-33 | 126 |
| Msa0818580 | MtrunA17_Chr7g0266401 | 47.059 | 119 | 62 | 1 | 89 | 207 | 256 | 373 | 6.61e-32 | 123 |
| Msa0818580 | MtrunA17_Chr1g0196971 | 47.500 | 120 | 61 | 2 | 89 | 207 | 220 | 338 | 3.53e-31 | 120 |
| Msa0818580 | MtrunA17_Chr7g0217121 | 42.208 | 154 | 85 | 2 | 58 | 207 | 231 | 384 | 2.13e-27 | 111 |
| Msa0818580 | MtrunA17_Chr7g0267591 | 45.082 | 122 | 63 | 3 | 89 | 208 | 121 | 240 | 5.79e-27 | 107 |
| Msa0818580 | MtrunA17_Chr6g0453031 | 42.975 | 121 | 61 | 3 | 95 | 207 | 260 | 380 | 1.77e-25 | 105 |
| Msa0818580 | MtrunA17_Chr8g0388481 | 41.844 | 141 | 71 | 4 | 89 | 221 | 210 | 347 | 8.20e-25 | 103 |
| Msa0818580 | MtrunA17_Chr8g0392761 | 48.485 | 99 | 51 | 0 | 89 | 187 | 118 | 216 | 9.60e-24 | 98.2 |
| Msa0818580 | MtrunA17_Chr3g0089011 | 37.838 | 111 | 61 | 3 | 105 | 207 | 1 | 111 | 1.29e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0818580 | AT5G58530.1 | 50.355 | 141 | 60 | 2 | 76 | 207 | 96 | 235 | 1.46e-38 | 138 |
| Msa0818580 | AT5G13810.1 | 53.333 | 120 | 55 | 1 | 90 | 208 | 123 | 242 | 7.88e-37 | 133 |
| Msa0818580 | AT2G41330.1 | 50.000 | 118 | 57 | 2 | 93 | 208 | 253 | 370 | 1.82e-32 | 125 |
| Msa0818580 | AT3G57070.1 | 47.934 | 121 | 60 | 2 | 90 | 207 | 264 | 384 | 8.07e-32 | 123 |
| Msa0818580 | AT5G39865.1 | 48.000 | 125 | 54 | 2 | 95 | 208 | 226 | 350 | 1.33e-28 | 114 |
| Msa0818580 | AT4G10630.1 | 45.385 | 130 | 60 | 2 | 89 | 207 | 171 | 300 | 7.91e-28 | 111 |
| Msa0818580 | AT3G28850.1 | 46.825 | 126 | 54 | 4 | 95 | 208 | 252 | 376 | 7.31e-27 | 110 |
| Msa0818580 | AT5G06470.1 | 44.538 | 119 | 64 | 2 | 89 | 207 | 84 | 200 | 1.48e-26 | 105 |
| Msa0818580 | AT1G64500.1 | 43.651 | 126 | 65 | 2 | 89 | 208 | 207 | 332 | 2.60e-26 | 107 |
| Msa0818580 | AT5G01420.1 | 45.000 | 120 | 65 | 1 | 89 | 207 | 251 | 370 | 3.26e-23 | 99.4 |
| Msa0818580 | AT5G03870.1 | 41.830 | 153 | 71 | 4 | 89 | 239 | 232 | 368 | 3.77e-23 | 99.0 |
| Msa0818580 | AT1G32760.1 | 38.788 | 165 | 84 | 5 | 26 | 187 | 107 | 257 | 8.56e-23 | 97.1 |
| Msa0818580 | AT3G11773.1 | 40.351 | 114 | 66 | 2 | 95 | 207 | 7 | 119 | 4.65e-21 | 88.2 |
| Msa0818580 | AT5G17460.5 | 59.783 | 92 | 33 | 3 | 230 | 317 | 65 | 156 | 3.71e-19 | 86.7 |
| Msa0818580 | AT5G17460.1 | 59.783 | 92 | 33 | 3 | 230 | 317 | 65 | 156 | 3.71e-19 | 86.7 |
| Msa0818580 | AT5G17460.4 | 59.783 | 92 | 33 | 3 | 230 | 317 | 65 | 156 | 3.71e-19 | 86.7 |
| Msa0818580 | AT5G17460.2 | 59.783 | 92 | 33 | 3 | 230 | 317 | 65 | 156 | 3.71e-19 | 86.7 |
| Msa0818580 | AT5G17460.3 | 60.494 | 81 | 28 | 3 | 241 | 317 | 1 | 81 | 3.49e-15 | 74.3 |
| Msa0818580 | AT3G11773.2 | 39.241 | 79 | 47 | 1 | 129 | 207 | 92 | 169 | 7.40e-12 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTAATGTGGCCGCCAAAT+TGG | 0.239495 | 5_3:+54531817 | None:intergenic |
| CGGAATAGTGAAGGAGATTT+TGG | 0.249394 | 5_3:-54531981 | None:intergenic |
| CCTATTGCTTCTTTCGTTGT+AGG | 0.264107 | 5_3:-54535430 | None:intergenic |
| GTGTGACGTTCTTGCGGTTC+AGG | 0.271638 | 5_3:-54532256 | None:intergenic |
| AGGGAGATTGTTTGTGGTGG+TGG | 0.291231 | 5_3:-54532062 | None:intergenic |
| CTCGGTGAAGCTAACCAATT+TGG | 0.313208 | 5_3:-54531831 | None:intergenic |
| TGGTGGTGGAGCGGTGGTTC+GGG | 0.327903 | 5_3:-54532048 | None:intergenic |
| GTGGTGGTGGAGCGGTGGTT+CGG | 0.343650 | 5_3:-54532049 | None:intergenic |
| CGGTGATGACGCGGAAGTTC+CGG | 0.358951 | 5_3:-54532181 | None:intergenic |
| TTCTAATATCTTTATGCAAA+CGG | 0.378966 | 5_3:-54535273 | None:intergenic |
| TCCTGTCATTAGCATCAATT+AGG | 0.384448 | 5_3:-54535327 | None:intergenic |
| TCAAAACTAAGCAAACTATC+TGG | 0.415443 | 5_3:-54532555 | None:intergenic |
| TTGATGAAGATAGCAATCTA+TGG | 0.420066 | 5_3:+54535206 | Msa0818580:CDS |
| GGGAGGGAGATTGTTTGTGG+TGG | 0.420392 | 5_3:-54532065 | None:intergenic |
| ACAGGAATAAGTTAAGTGTT+TGG | 0.424448 | 5_3:+54535344 | Msa0818580:CDS |
| GGTGGTTCGGGAGGCTGATA+AGG | 0.427466 | 5_3:-54532036 | None:intergenic |
| TGAAGTTGATAGAGCGAGTT+CGG | 0.441738 | 5_3:-54531899 | None:intergenic |
| TTTCTTGAACTCTTCATCCC+TGG | 0.455131 | 5_3:-54535167 | None:intergenic |
| GGAGGGAGGGAGATTGTTTG+TGG | 0.455777 | 5_3:-54532068 | None:intergenic |
| GCAAGAACGTCACACTTCCT+AGG | 0.457073 | 5_3:+54532264 | Msa0818580:CDS |
| GCGACGGTGGTGGTGAATTA+CGG | 0.459130 | 5_3:-54531860 | None:intergenic |
| CTCTTTGGAAGTAGAAGACC+AGG | 0.466806 | 5_3:+54535149 | Msa0818580:intron |
| TAGAGTTTCAATGTCTTTGA+AGG | 0.474062 | 5_3:-54531931 | None:intergenic |
| CCTACAACGAAAGAAGCAAT+AGG | 0.474671 | 5_3:+54535430 | Msa0818580:CDS |
| TCATTAGCATCAATTAGGTC+TGG | 0.475136 | 5_3:-54535322 | None:intergenic |
| ACTGTGGACCGGTGATGAAA+TGG | 0.481527 | 5_3:+54535390 | Msa0818580:CDS |
| AATAAGTTAAGTGTTTGGTC+TGG | 0.506179 | 5_3:+54535349 | Msa0818580:CDS |
| GGCTGATAAGGCGCGGAGGA+AGG | 0.507767 | 5_3:-54532024 | None:intergenic |
| AGCTGAATCGTTTGATCGAA+CGG | 0.508185 | 5_3:+54532351 | Msa0818580:CDS |
| GAAGATAGCAATCTATGGAC+AGG | 0.528424 | 5_3:+54535211 | Msa0818580:CDS |
| TTCATCAATCTCCTTTGCCA+AGG | 0.529479 | 5_3:-54535191 | None:intergenic |
| GATTGTTTGTGGTGGTGGAG+CGG | 0.530639 | 5_3:-54532057 | None:intergenic |
| CGCGTTCGTCGGTGATGACG+CGG | 0.534540 | 5_3:-54532190 | None:intergenic |
| TGGTGGAGCGGTGGTTCGGG+AGG | 0.536147 | 5_3:-54532045 | None:intergenic |
| ATCACTATCCATTTCATCAC+CGG | 0.540671 | 5_3:-54535398 | None:intergenic |
| TAAGGCGCGGAGGAAGGTGG+TGG | 0.541659 | 5_3:-54532018 | None:intergenic |
| ACCTAATTGATGCTAATGAC+AGG | 0.543173 | 5_3:+54535326 | Msa0818580:CDS |
| CAAGAACGTCACACTTCCTA+GGG | 0.546669 | 5_3:+54532265 | Msa0818580:CDS |
| GGTAGCATGAAGAAACATGC+AGG | 0.552753 | 5_3:-54532524 | None:intergenic |
| GGACGAAAACGATAAAGATA+AGG | 0.552901 | 5_3:+54535240 | Msa0818580:CDS |
| AACGGTTGTGATTGCTGTGG+AGG | 0.554704 | 5_3:+54532392 | Msa0818580:CDS |
| AAAAGCAAGACAGCAAGCTA+AGG | 0.556117 | 5_3:+54535294 | Msa0818580:CDS |
| GCGCCGTCAGATCAATCCTC+CGG | 0.563995 | 5_3:+54532162 | Msa0818580:CDS |
| GGTGAAGCTAACCAATTTGG+CGG | 0.564806 | 5_3:-54531828 | None:intergenic |
| TGATAAGGCGCGGAGGAAGG+TGG | 0.566083 | 5_3:-54532021 | None:intergenic |
| GGTGAATTACGGTGGCGGCT+CGG | 0.567412 | 5_3:-54531849 | None:intergenic |
| CAATGTAACGGTGACGGCGA+CGG | 0.571632 | 5_3:-54531876 | None:intergenic |
| GAGCGAGTTCGGCAATGTAA+CGG | 0.572770 | 5_3:-54531888 | None:intergenic |
| AACGGTGACGGCGACGGTGG+TGG | 0.574135 | 5_3:-54531870 | None:intergenic |
| GATTGAGACATCGCGTTCGT+CGG | 0.574663 | 5_3:-54532201 | None:intergenic |
| CGCGGCAGTCGTTGTATGTG+CGG | 0.574917 | 5_3:-54532142 | None:intergenic |
| TTCGTCGGCGGAGTTTACAT+CGG | 0.580690 | 5_3:+54532290 | Msa0818580:CDS |
| ATAGCAATCTATGGACAGGA+AGG | 0.581677 | 5_3:+54535215 | Msa0818580:CDS |
| GTTCCGGAGGATTGATCTGA+CGG | 0.583584 | 5_3:-54532165 | None:intergenic |
| TGTAACGGTGACGGCGACGG+TGG | 0.584819 | 5_3:-54531873 | None:intergenic |
| TAGGAAGTGTGACGTTCTTG+CGG | 0.585484 | 5_3:-54532262 | None:intergenic |
| CAAACAATCTCCCTCCCTCC+CGG | 0.598113 | 5_3:+54532071 | Msa0818580:CDS |
| CTGATGCGGCGGAATAGTGA+AGG | 0.603153 | 5_3:-54531990 | None:intergenic |
| GTTCAAGAAAACCTTGGCAA+AGG | 0.604279 | 5_3:+54535180 | Msa0818580:CDS |
| CAACCGTTCATATTCGACTT+CGG | 0.606454 | 5_3:-54532377 | None:intergenic |
| ACGGTTGTGATTGCTGTGGA+GGG | 0.607912 | 5_3:+54532393 | Msa0818580:CDS |
| TGAAGAGTTCAAGAAAACCT+TGG | 0.609483 | 5_3:+54535174 | Msa0818580:CDS |
| TGTATGTGCGGCGGATTACG+CGG | 0.616823 | 5_3:-54532130 | None:intergenic |
| GGCAGTCGTTGTATGTGCGG+CGG | 0.620254 | 5_3:-54532139 | None:intergenic |
| ACTCCGCCGACGAAAACCCT+AGG | 0.629669 | 5_3:-54532281 | None:intergenic |
| GTCGGCGGAGTTTACATCGG+CGG | 0.630455 | 5_3:+54532293 | Msa0818580:CDS |
| TGGTGGAGATTCTGATGCGG+CGG | 0.632080 | 5_3:-54532001 | None:intergenic |
| GTGGTGGTGAATTACGGTGG+CGG | 0.632999 | 5_3:-54531854 | None:intergenic |
| CAATCTATGGACAGGAAGGG+AGG | 0.634543 | 5_3:+54535219 | Msa0818580:CDS |
| GTTCGGCAATGTAACGGTGA+CGG | 0.636544 | 5_3:-54531882 | None:intergenic |
| TTCGGGAGGCTGATAAGGCG+CGG | 0.636890 | 5_3:-54532031 | None:intergenic |
| TGTTTGTGGTGGTGGAGCGG+TGG | 0.642440 | 5_3:-54532054 | None:intergenic |
| GAGGAAAAGATACTGTGGAC+CGG | 0.644192 | 5_3:+54535379 | Msa0818580:CDS |
| TTACATCGGCGGCGTTGACG+AGG | 0.647643 | 5_3:+54532304 | Msa0818580:CDS |
| TAGCAATCTATGGACAGGAA+GGG | 0.648027 | 5_3:+54535216 | Msa0818580:CDS |
| TGATGACGCGGAAGTTCCGG+AGG | 0.650883 | 5_3:-54532178 | None:intergenic |
| GTAGCATGAAGAAACATGCA+GGG | 0.654005 | 5_3:-54532523 | None:intergenic |
| GTGAAACAGTTACACGAAAG+CGG | 0.662420 | 5_3:+54532326 | Msa0818580:CDS |
| TGTTTGGTCTGGCAGTGACG+AGG | 0.671908 | 5_3:+54535360 | Msa0818580:CDS |
| GCAAACTATCTGGTGTATCG+CGG | 0.678065 | 5_3:-54532545 | None:intergenic |
| AGGTGGTGGAGATTCTGATG+CGG | 0.687798 | 5_3:-54532004 | None:intergenic |
| TGATGAAATGGATAGTGATG+AGG | 0.688742 | 5_3:+54535402 | Msa0818580:CDS |
| TTACCGAAGTCGAATATGAA+CGG | 0.689259 | 5_3:+54532374 | Msa0818580:CDS |
| GGATTTCGTTGAGTTCGTCG+CGG | 0.709368 | 5_3:-54532235 | None:intergenic |
| ATGTGCGGCGGATTACGCGG+AGG | 0.712042 | 5_3:-54532127 | None:intergenic |
| ATGAACGGTTGTGATTGCTG+TGG | 0.715120 | 5_3:+54532389 | Msa0818580:CDS |
| GTGACGAGGAAAAGATACTG+TGG | 0.716223 | 5_3:+54535374 | Msa0818580:CDS |
| ACGGTGGTGGTGAATTACGG+TGG | 0.721566 | 5_3:-54531857 | None:intergenic |
| GGGAGGCTGATAAGGCGCGG+AGG | 0.727383 | 5_3:-54532028 | None:intergenic |
| GGAGGATTGATCTGACGGCG+CGG | 0.740619 | 5_3:-54532160 | None:intergenic |
| TGGTGAAGTAAACGACGACG+CGG | 0.781889 | 5_3:-54532103 | None:intergenic |
| TCTTTGGAAGTAGAAGACCA+GGG | 0.786991 | 5_3:+54535150 | Msa0818580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAACATCATATTTTA+GGG | - | chr5_3:54533256-54533275 | None:intergenic | 10.0% |
| !!! | AAAAAAAAACATCATATTTT+AGG | - | chr5_3:54533257-54533276 | None:intergenic | 10.0% |
| !! | TGAAAAAAATTATATCTATA+TGG | + | chr5_3:54534352-54534371 | Msa0818580:intron | 10.0% |
| !!! | TTATATGATCATTTAACTTA+GGG | + | chr5_3:54532625-54532644 | Msa0818580:intron | 15.0% |
| !! | ATATATGTTATTACATAGTT+TGG | + | chr5_3:54532657-54532676 | Msa0818580:intron | 15.0% |
| !! | TATATGTTATTACATAGTTT+GGG | + | chr5_3:54532658-54532677 | Msa0818580:intron | 15.0% |
| !! | ATTTAATTAATGATATCACA+TGG | + | chr5_3:54532783-54532802 | Msa0818580:intron | 15.0% |
| !!! | GAAGATTTTTAAAATAATGA+AGG | + | chr5_3:54533181-54533200 | Msa0818580:intron | 15.0% |
| !!! | ATTTTTAAAATAATGAAGGT+AGG | + | chr5_3:54533185-54533204 | Msa0818580:intron | 15.0% |
| !!! | TTTTTTTTTGTTTTTTTGTG+TGG | + | chr5_3:54533269-54533288 | Msa0818580:intron | 15.0% |
| !! | GTAAATTATAAAAACTGAAA+TGG | - | chr5_3:54534197-54534216 | None:intergenic | 15.0% |
| !! | AAAATAATATACATTAGAAC+TGG | + | chr5_3:54534299-54534318 | Msa0818580:intron | 15.0% |
| !!! | AAAGGTGTTTTAATATTTAA+AGG | + | chr5_3:54534465-54534484 | Msa0818580:intron | 15.0% |
| !!! | GGTTTTAATTAAAATGATAA+GGG | + | chr5_3:54534497-54534516 | Msa0818580:intron | 15.0% |
| !!! | CTTATATGATCATTTAACTT+AGG | + | chr5_3:54532624-54532643 | Msa0818580:intron | 20.0% |
| !!! | TATATGTGATAATGATGATA+TGG | + | chr5_3:54532720-54532739 | Msa0818580:intron | 20.0% |
| !! | TGTATTAAAATGGTTTGAAT+CGG | - | chr5_3:54533058-54533077 | None:intergenic | 20.0% |
| !! | AAAACGTCATTGTATTAAAA+TGG | - | chr5_3:54533068-54533087 | None:intergenic | 20.0% |
| !!! | CCATGTATTATACTATTTTA+AGG | - | chr5_3:54533224-54533243 | None:intergenic | 20.0% |
| !! | CCTTAAAATAGTATAATACA+TGG | + | chr5_3:54533221-54533240 | Msa0818580:intron | 20.0% |
| !!! | CAAAGTAAATTTATTTTTCG+AGG | - | chr5_3:54533794-54533813 | None:intergenic | 20.0% |
| !! | TAAATGCAAAATGACATAAA+AGG | + | chr5_3:54534055-54534074 | Msa0818580:intron | 20.0% |
| !! | TAATATTTAAAGGTTAAAGC+TGG | + | chr5_3:54534475-54534494 | Msa0818580:intron | 20.0% |
| !! | AATATTTAAAGGTTAAAGCT+GGG | + | chr5_3:54534476-54534495 | Msa0818580:intron | 20.0% |
| !!! | GGGTTTTAATTAAAATGATA+AGG | + | chr5_3:54534496-54534515 | Msa0818580:intron | 20.0% |
| !! | TAAAATGATAAGGGTAAATA+TGG | + | chr5_3:54534506-54534525 | Msa0818580:intron | 20.0% |
| !!! | CAAAATTAATTTTGTGATTC+AGG | + | chr5_3:54534878-54534897 | Msa0818580:intron | 20.0% |
| !! | TCTTGAATAAAACATGAATT+TGG | - | chr5_3:54534981-54535000 | None:intergenic | 20.0% |
| !! | TTCTAATATCTTTATGCAAA+CGG | - | chr5_3:54535276-54535295 | None:intergenic | 20.0% |
| ! | AAAGTGTATACGGATAAAAA+CGG | + | chr5_3:54532455-54532474 | Msa0818580:intron | 25.0% |
| ! | GTAATGTTAATGGTTTGATT+AGG | + | chr5_3:54532498-54532517 | Msa0818580:intron | 25.0% |
| ! | ATCATACAAGTCATGTAATA+TGG | - | chr5_3:54532692-54532711 | None:intergenic | 25.0% |
| ! | ACACTTGAAAAATCAAACTT+GGG | - | chr5_3:54532972-54532991 | None:intergenic | 25.0% |
| ! | AACACTTGAAAAATCAAACT+TGG | - | chr5_3:54532973-54532992 | None:intergenic | 25.0% |
| !! | AATGACTAAGTCATATCTTT+TGG | - | chr5_3:54533104-54533123 | None:intergenic | 25.0% |
| ! | TAATTTCATCACTTGATATG+AGG | - | chr5_3:54533429-54533448 | None:intergenic | 25.0% |
| ! | AAGTGATGAAATTATCATGA+TGG | + | chr5_3:54533435-54533454 | Msa0818580:intron | 25.0% |
| !! | TTTTCATCAATCATCTATCT+TGG | - | chr5_3:54533560-54533579 | None:intergenic | 25.0% |
| !! | GATAAGCTAATTAAAGTGTT+TGG | + | chr5_3:54534007-54534026 | Msa0818580:intron | 25.0% |
| !! | AAAGTGTTTGGTAAAATTAG+CGG | + | chr5_3:54534019-54534038 | Msa0818580:intron | 25.0% |
| ! | AAAAATAGCTTATAAGCTCA+TGG | + | chr5_3:54534586-54534605 | Msa0818580:intron | 25.0% |
| ! | TTGACAAAATAAGTTCTGTT+TGG | - | chr5_3:54534654-54534673 | None:intergenic | 25.0% |
| ! | ATTAGAAGAACTATACATGT+AGG | - | chr5_3:54534731-54534750 | None:intergenic | 25.0% |
| !! | ATTAATTTTGTGATTCAGGT+CGG | + | chr5_3:54534882-54534901 | Msa0818580:intron | 25.0% |
| TAGAGTTTCAATGTCTTTGA+AGG | - | chr5_3:54531934-54531953 | None:intergenic | 30.0% | |
| !! | AATTTGGTTCAGGTTTTTCT+TGG | - | chr5_3:54531959-54531978 | None:intergenic | 30.0% |
| !! | GATTTTGGTAAATTTGGTTC+AGG | - | chr5_3:54531969-54531988 | None:intergenic | 30.0% |
| !! | GAAGGAGATTTTGGTAAATT+TGG | - | chr5_3:54531975-54531994 | None:intergenic | 30.0% |
| !! | TGTTTGGGTTGTAATGTTAA+TGG | + | chr5_3:54532488-54532507 | Msa0818580:intron | 30.0% |
| TCAAAACTAAGCAAACTATC+TGG | - | chr5_3:54532558-54532577 | None:intergenic | 30.0% | |
| !! | CAGCTTTGATTTGATATTGT+GGG | + | chr5_3:54532752-54532771 | Msa0818580:intron | 30.0% |
| TGAAAAATCAAACTTGGGTT+GGG | - | chr5_3:54532967-54532986 | None:intergenic | 30.0% | |
| TTGAAAAATCAAACTTGGGT+TGG | - | chr5_3:54532968-54532987 | None:intergenic | 30.0% | |
| !! | TTTCAAGTGTTTTTCATTGC+TGG | + | chr5_3:54532982-54533001 | Msa0818580:intron | 30.0% |
| ATGCTAACGATGAAGATAAT+TGG | + | chr5_3:54533676-54533695 | Msa0818580:intron | 30.0% | |
| !!! | TTTATTTTTCGAGGTATGCT+TGG | - | chr5_3:54533785-54533804 | None:intergenic | 30.0% |
| TGGACTTGTAACAAAAAATC+TGG | + | chr5_3:54534319-54534338 | Msa0818580:intron | 30.0% | |
| TAAGCTATAAGCTAGTTATG+TGG | + | chr5_3:54534690-54534709 | Msa0818580:intron | 30.0% | |
| GTATAGTTCTTCTAATGTGA+TGG | + | chr5_3:54534735-54534754 | Msa0818580:intron | 30.0% | |
| ! | TTTTCATCGCTTTGATCTTA+TGG | + | chr5_3:54535007-54535026 | Msa0818580:intron | 30.0% |
| ! | ATTACAAAAGAAGCGTGAAT+TGG | - | chr5_3:54535058-54535077 | None:intergenic | 30.0% |
| TTGATGAAGATAGCAATCTA+TGG | + | chr5_3:54535206-54535225 | Msa0818580:CDS | 30.0% | |
| ACAGGAATAAGTTAAGTGTT+TGG | + | chr5_3:54535344-54535363 | Msa0818580:CDS | 30.0% | |
| AATAAGTTAAGTGTTTGGTC+TGG | + | chr5_3:54535349-54535368 | Msa0818580:CDS | 30.0% | |
| TTACCGAAGTCGAATATGAA+CGG | + | chr5_3:54532374-54532393 | Msa0818580:CDS | 35.0% | |
| ! | AAACGGATTTAGAAGCTGTT+TGG | + | chr5_3:54532472-54532491 | Msa0818580:intron | 35.0% |
| ! | AACGGATTTAGAAGCTGTTT+GGG | + | chr5_3:54532473-54532492 | Msa0818580:intron | 35.0% |
| CCACAATATCAAATCAAAGC+TGG | - | chr5_3:54532754-54532773 | None:intergenic | 35.0% | |
| !! | CCAGCTTTGATTTGATATTG+TGG | + | chr5_3:54532751-54532770 | Msa0818580:intron | 35.0% |
| TAATGATATCACATGGTGCA+AGG | + | chr5_3:54532790-54532809 | Msa0818580:intron | 35.0% | |
| GAAATTATGTCTTGTGTGTG+TGG | + | chr5_3:54532875-54532894 | Msa0818580:intron | 35.0% | |
| AGTCATTAGATTGAATCACG+TGG | + | chr5_3:54533117-54533136 | Msa0818580:intron | 35.0% | |
| TCTCGATAATCAATTCGCAA+GGG | - | chr5_3:54533163-54533182 | None:intergenic | 35.0% | |
| TTCTCGATAATCAATTCGCA+AGG | - | chr5_3:54533164-54533183 | None:intergenic | 35.0% | |
| ACGATTTAAGCAAAAACACG+TGG | + | chr5_3:54533584-54533603 | Msa0818580:intron | 35.0% | |
| TAACGATGAAGATAATTGGC+TGG | + | chr5_3:54533680-54533699 | Msa0818580:intron | 35.0% | |
| !!! | AACTTTGAGAGGTCACTTTT+TGG | - | chr5_3:54533720-54533739 | None:intergenic | 35.0% |
| AATTCCATGACAACTTTGAG+AGG | - | chr5_3:54533731-54533750 | None:intergenic | 35.0% | |
| TATTGCGTACTCTTACTTTC+AGG | + | chr5_3:54533834-54533853 | Msa0818580:intron | 35.0% | |
| ATTGCGTACTCTTACTTTCA+GGG | + | chr5_3:54533835-54533854 | Msa0818580:intron | 35.0% | |
| GCTCTGTTTGGTAAAAATAG+CGG | + | chr5_3:54533905-54533924 | Msa0818580:intron | 35.0% | |
| GTATGCCAAACGTTAAGAAA+TGG | + | chr5_3:54534388-54534407 | Msa0818580:intron | 35.0% | |
| CAAGTCCATTTCTTAACGTT+TGG | - | chr5_3:54534396-54534415 | None:intergenic | 35.0% | |
| TAGAGGCAAAGCAGTAATAA+AGG | + | chr5_3:54534447-54534466 | Msa0818580:intron | 35.0% | |
| TAGTTCTTCTAATGTGATGG+AGG | + | chr5_3:54534738-54534757 | Msa0818580:intron | 35.0% | |
| ACATTTAACCTTTGTGAGAG+TGG | - | chr5_3:54534801-54534820 | None:intergenic | 35.0% | |
| CTCTCACAAAGGTTAAATGT+TGG | + | chr5_3:54534801-54534820 | Msa0818580:intron | 35.0% | |
| CTGAAAGAGAAACAAAGATG+AGG | - | chr5_3:54534857-54534876 | None:intergenic | 35.0% | |
| TAACCTTGAAAATTCAGCAG+AGG | - | chr5_3:54534935-54534954 | None:intergenic | 35.0% | |
| CTACTTCCAAAGAGATCATA+GGG | - | chr5_3:54535143-54535162 | None:intergenic | 35.0% | |
| TCTACTTCCAAAGAGATCAT+AGG | - | chr5_3:54535144-54535163 | None:intergenic | 35.0% | |
| TGAAGAGTTCAAGAAAACCT+TGG | + | chr5_3:54535174-54535193 | Msa0818580:CDS | 35.0% | |
| GGACGAAAACGATAAAGATA+AGG | + | chr5_3:54535240-54535259 | Msa0818580:CDS | 35.0% | |
| TCATTAGCATCAATTAGGTC+TGG | - | chr5_3:54535325-54535344 | None:intergenic | 35.0% | |
| ACCTAATTGATGCTAATGAC+AGG | + | chr5_3:54535326-54535345 | Msa0818580:CDS | 35.0% | |
| TCCTGTCATTAGCATCAATT+AGG | - | chr5_3:54535330-54535349 | None:intergenic | 35.0% | |
| ATCACTATCCATTTCATCAC+CGG | - | chr5_3:54535401-54535420 | None:intergenic | 35.0% | |
| TGATGAAATGGATAGTGATG+AGG | + | chr5_3:54535402-54535421 | Msa0818580:CDS | 35.0% | |
| !! | TGAAGTTGATAGAGCGAGTT+CGG | - | chr5_3:54531902-54531921 | None:intergenic | 40.0% |
| ! | CGGAATAGTGAAGGAGATTT+TGG | - | chr5_3:54531984-54532003 | None:intergenic | 40.0% |
| GTGAAACAGTTACACGAAAG+CGG | + | chr5_3:54532326-54532345 | Msa0818580:CDS | 40.0% | |
| AGCTGAATCGTTTGATCGAA+CGG | + | chr5_3:54532351-54532370 | Msa0818580:CDS | 40.0% | |
| CAACCGTTCATATTCGACTT+CGG | - | chr5_3:54532380-54532399 | None:intergenic | 40.0% | |
| GTTGTGTGTGATGAGTGTAA+CGG | + | chr5_3:54532425-54532444 | Msa0818580:intron | 40.0% | |
| CGGAAGTCACAAAGTGTATA+CGG | + | chr5_3:54532445-54532464 | Msa0818580:intron | 40.0% | |
| GTAGCATGAAGAAACATGCA+GGG | - | chr5_3:54532526-54532545 | None:intergenic | 40.0% | |
| TAGTTACAGCTCACAACAAC+TGG | + | chr5_3:54532581-54532600 | Msa0818580:intron | 40.0% | |
| CCACATACATCACACGAAAA+GGG | - | chr5_3:54532820-54532839 | None:intergenic | 40.0% | |
| TCCACATACATCACACGAAA+AGG | - | chr5_3:54532821-54532840 | None:intergenic | 40.0% | |
| ! | TTTTCGTGTGATGTATGTGG+AGG | + | chr5_3:54532820-54532839 | Msa0818580:intron | 40.0% |
| TTTCGTGTGATGTATGTGGA+GGG | + | chr5_3:54532821-54532840 | Msa0818580:intron | 40.0% | |
| ATGGTTTGAATCGGATGACT+CGG | - | chr5_3:54533049-54533068 | None:intergenic | 40.0% | |
| CTCGATAATCAATTCGCAAG+GGG | - | chr5_3:54533162-54533181 | None:intergenic | 40.0% | |
| CTCGATCAATTAGTGGAAAG+GGG | - | chr5_3:54533309-54533328 | None:intergenic | 40.0% | |
| GCTCGATCAATTAGTGGAAA+GGG | - | chr5_3:54533310-54533329 | None:intergenic | 40.0% | |
| GAGTTTGAGAATGTCTCTCA+TGG | + | chr5_3:54533335-54533354 | Msa0818580:intron | 40.0% | |
| TTGCGTACTCTTACTTTCAG+GGG | + | chr5_3:54533836-54533855 | Msa0818580:intron | 40.0% | |
| AAGCGGTCAGTGAAAGATTA+CGG | + | chr5_3:54533883-54533902 | Msa0818580:intron | 40.0% | |
| TGAAAGATTACGGCTCTGTT+TGG | + | chr5_3:54533893-54533912 | Msa0818580:intron | 40.0% | |
| ! | CTATACATGTAGGCACTGTT+TGG | - | chr5_3:54534721-54534740 | None:intergenic | 40.0% |
| TGGAGGTCATTCTCTTACAA+TGG | + | chr5_3:54534755-54534774 | Msa0818580:intron | 40.0% | |
| ! | ATTTGCTACCACTCTCACAA+AGG | + | chr5_3:54534790-54534809 | Msa0818580:intron | 40.0% |
| CGCTTTGATCTTATGGCAAT+TGG | + | chr5_3:54535014-54535033 | Msa0818580:intron | 40.0% | |
| ! | TCTTTGGAAGTAGAAGACCA+GGG | + | chr5_3:54535150-54535169 | Msa0818580:intron | 40.0% |
| TTTCTTGAACTCTTCATCCC+TGG | - | chr5_3:54535170-54535189 | None:intergenic | 40.0% | |
| GTTCAAGAAAACCTTGGCAA+AGG | + | chr5_3:54535180-54535199 | Msa0818580:CDS | 40.0% | |
| TTCATCAATCTCCTTTGCCA+AGG | - | chr5_3:54535194-54535213 | None:intergenic | 40.0% | |
| GAAGATAGCAATCTATGGAC+AGG | + | chr5_3:54535211-54535230 | Msa0818580:CDS | 40.0% | |
| ATAGCAATCTATGGACAGGA+AGG | + | chr5_3:54535215-54535234 | Msa0818580:CDS | 40.0% | |
| TAGCAATCTATGGACAGGAA+GGG | + | chr5_3:54535216-54535235 | Msa0818580:CDS | 40.0% | |
| AAAAGCAAGACAGCAAGCTA+AGG | + | chr5_3:54535294-54535313 | Msa0818580:CDS | 40.0% | |
| CCTATTGCTTCTTTCGTTGT+AGG | - | chr5_3:54535433-54535452 | None:intergenic | 40.0% | |
| CCTACAACGAAAGAAGCAAT+AGG | + | chr5_3:54535430-54535449 | Msa0818580:CDS | 40.0% | |
| GGTGAAGCTAACCAATTTGG+CGG | - | chr5_3:54531831-54531850 | None:intergenic | 45.0% | |
| CTCGGTGAAGCTAACCAATT+TGG | - | chr5_3:54531834-54531853 | None:intergenic | 45.0% | |
| ! | TAGGAAGTGTGACGTTCTTG+CGG | - | chr5_3:54532265-54532284 | None:intergenic | 45.0% |
| CAAGAACGTCACACTTCCTA+GGG | + | chr5_3:54532265-54532284 | Msa0818580:CDS | 45.0% | |
| ! | ACACTTCCTAGGGTTTTCGT+CGG | + | chr5_3:54532275-54532294 | Msa0818580:CDS | 45.0% |
| ATGAACGGTTGTGATTGCTG+TGG | + | chr5_3:54532389-54532408 | Msa0818580:CDS | 45.0% | |
| GGTAGCATGAAGAAACATGC+AGG | - | chr5_3:54532527-54532546 | None:intergenic | 45.0% | |
| GCAAACTATCTGGTGTATCG+CGG | - | chr5_3:54532548-54532567 | None:intergenic | 45.0% | |
| ! | CCCTTTTCGTGTGATGTATG+TGG | + | chr5_3:54532817-54532836 | Msa0818580:intron | 45.0% |
| ATGTATGTGGAGGGTTTCGT+GGG | + | chr5_3:54532830-54532849 | Msa0818580:intron | 45.0% | |
| TGTCATGTGCCAAAGTCACA+CGG | - | chr5_3:54532902-54532921 | None:intergenic | 45.0% | |
| CGCTCGATCAATTAGTGGAA+AGG | - | chr5_3:54533311-54533330 | None:intergenic | 45.0% | |
| CGTTACGCTCGATCAATTAG+TGG | - | chr5_3:54533316-54533335 | None:intergenic | 45.0% | |
| GTGACCTCTCAAAGTTGTCA+TGG | + | chr5_3:54533724-54533743 | Msa0818580:intron | 45.0% | |
| TCGAGGTATGCTTGGATCAA+AGG | - | chr5_3:54533777-54533796 | None:intergenic | 45.0% | |
| GCTTGAGGGCTAAGAAAAAG+CGG | + | chr5_3:54533866-54533885 | Msa0818580:intron | 45.0% | |
| GTAACGTCTCGTGAAGATAG+AGG | + | chr5_3:54534430-54534449 | Msa0818580:intron | 45.0% | |
| ! | CATGTAGGCACTGTTTGGTA+AGG | - | chr5_3:54534716-54534735 | None:intergenic | 45.0% |
| TGTGAGAGTGGTAGCAAATG+TGG | - | chr5_3:54534789-54534808 | None:intergenic | 45.0% | |
| ! | GATGAGGCATTTCACTCTCA+TGG | - | chr5_3:54534841-54534860 | None:intergenic | 45.0% |
| ! | GTGCCTCTGCTGAATTTTCA+AGG | + | chr5_3:54534929-54534948 | Msa0818580:intron | 45.0% |
| GCTTGTGTACACCATTAGCT+CGG | - | chr5_3:54535121-54535140 | None:intergenic | 45.0% | |
| CACAAGCCCTATGATCTCTT+TGG | + | chr5_3:54535134-54535153 | Msa0818580:intron | 45.0% | |
| ! | CTCTTTGGAAGTAGAAGACC+AGG | + | chr5_3:54535149-54535168 | Msa0818580:intron | 45.0% |
| GTGACGAGGAAAAGATACTG+TGG | + | chr5_3:54535374-54535393 | Msa0818580:CDS | 45.0% | |
| GAGGAAAAGATACTGTGGAC+CGG | + | chr5_3:54535379-54535398 | Msa0818580:CDS | 45.0% | |
| GTTCGGCAATGTAACGGTGA+CGG | - | chr5_3:54531885-54531904 | None:intergenic | 50.0% | |
| GAGCGAGTTCGGCAATGTAA+CGG | - | chr5_3:54531891-54531910 | None:intergenic | 50.0% | |
| !! | AGGTGGTGGAGATTCTGATG+CGG | - | chr5_3:54532007-54532026 | None:intergenic | 50.0% |
| !! | GATTGTTTGTGGTGGTGGAG+CGG | - | chr5_3:54532060-54532079 | None:intergenic | 50.0% |
| AGGGAGATTGTTTGTGGTGG+TGG | - | chr5_3:54532065-54532084 | None:intergenic | 50.0% | |
| TGGTGAAGTAAACGACGACG+CGG | - | chr5_3:54532106-54532125 | None:intergenic | 50.0% | |
| GTTCCGGAGGATTGATCTGA+CGG | - | chr5_3:54532168-54532187 | None:intergenic | 50.0% | |
| GATTGAGACATCGCGTTCGT+CGG | - | chr5_3:54532204-54532223 | None:intergenic | 50.0% | |
| GGATTTCGTTGAGTTCGTCG+CGG | - | chr5_3:54532238-54532257 | None:intergenic | 50.0% | |
| GCAAGAACGTCACACTTCCT+AGG | + | chr5_3:54532264-54532283 | Msa0818580:CDS | 50.0% | |
| TTCGTCGGCGGAGTTTACAT+CGG | + | chr5_3:54532290-54532309 | Msa0818580:CDS | 50.0% | |
| AACGGTTGTGATTGCTGTGG+AGG | + | chr5_3:54532392-54532411 | Msa0818580:CDS | 50.0% | |
| ACGGTTGTGATTGCTGTGGA+GGG | + | chr5_3:54532393-54532412 | Msa0818580:CDS | 50.0% | |
| GATGTATGTGGAGGGTTTCG+TGG | + | chr5_3:54532829-54532848 | Msa0818580:intron | 50.0% | |
| TTCAGGGGTAGCAAAGCTTG+AGG | + | chr5_3:54533851-54533870 | Msa0818580:intron | 50.0% | |
| TCAGGGGTAGCAAAGCTTGA+GGG | + | chr5_3:54533852-54533871 | Msa0818580:intron | 50.0% | |
| TGTGTACACCATTAGCTCGG+AGG | - | chr5_3:54535118-54535137 | None:intergenic | 50.0% | |
| CAATCTATGGACAGGAAGGG+AGG | + | chr5_3:54535219-54535238 | Msa0818580:CDS | 50.0% | |
| ACTGTGGACCGGTGATGAAA+TGG | + | chr5_3:54535390-54535409 | Msa0818580:CDS | 50.0% | |
| ! | GTGGTGGTGAATTACGGTGG+CGG | - | chr5_3:54531857-54531876 | None:intergenic | 55.0% |
| ! | ACGGTGGTGGTGAATTACGG+TGG | - | chr5_3:54531860-54531879 | None:intergenic | 55.0% |
| ! | GCGACGGTGGTGGTGAATTA+CGG | - | chr5_3:54531863-54531882 | None:intergenic | 55.0% |
| ! | CAATGTAACGGTGACGGCGA+CGG | - | chr5_3:54531879-54531898 | None:intergenic | 55.0% |
| CTGATGCGGCGGAATAGTGA+AGG | - | chr5_3:54531993-54532012 | None:intergenic | 55.0% | |
| TGGTGGAGATTCTGATGCGG+CGG | - | chr5_3:54532004-54532023 | None:intergenic | 55.0% | |
| GGGAGGGAGATTGTTTGTGG+TGG | - | chr5_3:54532068-54532087 | None:intergenic | 55.0% | |
| GGAGGGAGGGAGATTGTTTG+TGG | - | chr5_3:54532071-54532090 | None:intergenic | 55.0% | |
| CAAACAATCTCCCTCCCTCC+CGG | + | chr5_3:54532071-54532090 | Msa0818580:CDS | 55.0% | |
| ! | AAACGACGACGCGGTTTTCG+AGG | - | chr5_3:54532097-54532116 | None:intergenic | 55.0% |
| !! | TGTATGTGCGGCGGATTACG+CGG | - | chr5_3:54532133-54532152 | None:intergenic | 55.0% |
| GTGTGACGTTCTTGCGGTTC+AGG | - | chr5_3:54532259-54532278 | None:intergenic | 55.0% | |
| ! | CTTCCTAGGGTTTTCGTCGG+CGG | + | chr5_3:54532278-54532297 | Msa0818580:CDS | 55.0% |
| TATGTGGAGGGTTTCGTGGG+CGG | + | chr5_3:54532833-54532852 | Msa0818580:intron | 55.0% | |
| GTGTGTGGACCGTGTGACTT+TGG | + | chr5_3:54532890-54532909 | Msa0818580:intron | 55.0% | |
| CGCAAGTTCCTCCGAGCTAA+TGG | + | chr5_3:54535107-54535126 | Msa0818580:intron | 55.0% | |
| TGTTTGGTCTGGCAGTGACG+AGG | + | chr5_3:54535360-54535379 | Msa0818580:CDS | 55.0% | |
| ! | GGTGAATTACGGTGGCGGCT+CGG | - | chr5_3:54531852-54531871 | None:intergenic | 60.0% |
| TGATAAGGCGCGGAGGAAGG+TGG | - | chr5_3:54532024-54532043 | None:intergenic | 60.0% | |
| TTCGGGAGGCTGATAAGGCG+CGG | - | chr5_3:54532034-54532053 | None:intergenic | 60.0% | |
| ! | GGTGGTTCGGGAGGCTGATA+AGG | - | chr5_3:54532039-54532058 | None:intergenic | 60.0% |
| !! | TGTTTGTGGTGGTGGAGCGG+TGG | - | chr5_3:54532057-54532076 | None:intergenic | 60.0% |
| GGCAGTCGTTGTATGTGCGG+CGG | - | chr5_3:54532142-54532161 | None:intergenic | 60.0% | |
| CGCGGCAGTCGTTGTATGTG+CGG | - | chr5_3:54532145-54532164 | None:intergenic | 60.0% | |
| GGAGGATTGATCTGACGGCG+CGG | - | chr5_3:54532163-54532182 | None:intergenic | 60.0% | |
| GCGCCGTCAGATCAATCCTC+CGG | + | chr5_3:54532162-54532181 | Msa0818580:CDS | 60.0% | |
| ! | TGATGACGCGGAAGTTCCGG+AGG | - | chr5_3:54532181-54532200 | None:intergenic | 60.0% |
| ! | CGGTGATGACGCGGAAGTTC+CGG | - | chr5_3:54532184-54532203 | None:intergenic | 60.0% |
| ACTCCGCCGACGAAAACCCT+AGG | - | chr5_3:54532284-54532303 | None:intergenic | 60.0% | |
| GTCGGCGGAGTTTACATCGG+CGG | + | chr5_3:54532293-54532312 | Msa0818580:CDS | 60.0% | |
| !! | TTACATCGGCGGCGTTGACG+AGG | + | chr5_3:54532304-54532323 | Msa0818580:CDS | 60.0% |
| ATGTGGAGGGTTTCGTGGGC+GGG | + | chr5_3:54532834-54532853 | Msa0818580:intron | 60.0% | |
| ! | TGTAACGGTGACGGCGACGG+TGG | - | chr5_3:54531876-54531895 | None:intergenic | 65.0% |
| TAAGGCGCGGAGGAAGGTGG+TGG | - | chr5_3:54532021-54532040 | None:intergenic | 65.0% | |
| GGCTGATAAGGCGCGGAGGA+AGG | - | chr5_3:54532027-54532046 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGAGCGGTGGTTC+GGG | - | chr5_3:54532051-54532070 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGAGCGGTGGTT+CGG | - | chr5_3:54532052-54532071 | None:intergenic | 65.0% |
| !! | GTTTTCGAGGCCGGGAGGGA+GGG | - | chr5_3:54532084-54532103 | None:intergenic | 65.0% |
| !! | ACGACGCGGTTTTCGAGGCC+GGG | - | chr5_3:54532092-54532111 | None:intergenic | 65.0% |
| !! | GACGACGCGGTTTTCGAGGC+CGG | - | chr5_3:54532093-54532112 | None:intergenic | 65.0% |
| !! | ATGTGCGGCGGATTACGCGG+AGG | - | chr5_3:54532130-54532149 | None:intergenic | 65.0% |
| ! | CGCGTTCGTCGGTGATGACG+CGG | - | chr5_3:54532193-54532212 | None:intergenic | 65.0% |
| TGTGGAGGGTTTCGTGGGCG+GGG | + | chr5_3:54532835-54532854 | Msa0818580:intron | 65.0% | |
| ! | AACGGTGACGGCGACGGTGG+TGG | - | chr5_3:54531873-54531892 | None:intergenic | 70.0% |
| GGGAGGCTGATAAGGCGCGG+AGG | - | chr5_3:54532031-54532050 | None:intergenic | 70.0% | |
| ! | TGGTGGAGCGGTGGTTCGGG+AGG | - | chr5_3:54532048-54532067 | None:intergenic | 70.0% |
| !! | GGTTTTCGAGGCCGGGAGGG+AGG | - | chr5_3:54532085-54532104 | None:intergenic | 70.0% |
| !! | CGCGGTTTTCGAGGCCGGGA+GGG | - | chr5_3:54532088-54532107 | None:intergenic | 70.0% |
| !! | ACGCGGTTTTCGAGGCCGGG+AGG | - | chr5_3:54532089-54532108 | None:intergenic | 70.0% |
| !! | GCGGCGGATTACGCGGAGGC+TGG | - | chr5_3:54532126-54532145 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 54531822 | 54535459 | 54531822 | ID=Msa0818580;Name=Msa0818580 |
| chr5_3 | mRNA | 54531822 | 54535459 | 54531822 | ID=Msa0818580-mRNA-1;Parent=Msa0818580;Name=Msa0818580-mRNA-1;_AED=0.14;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|324 |
| chr5_3 | exon | 54531822 | 54532440 | 54531822 | ID=Msa0818580-mRNA-1:exon:16533;Parent=Msa0818580-mRNA-1 |
| chr5_3 | exon | 54532520 | 54532578 | 54532520 | ID=Msa0818580-mRNA-1:exon:16534;Parent=Msa0818580-mRNA-1 |
| chr5_3 | exon | 54535163 | 54535459 | 54535163 | ID=Msa0818580-mRNA-1:exon:16535;Parent=Msa0818580-mRNA-1 |
| chr5_3 | CDS | 54531822 | 54532440 | 54531822 | ID=Msa0818580-mRNA-1:cds;Parent=Msa0818580-mRNA-1 |
| chr5_3 | CDS | 54532520 | 54532578 | 54532520 | ID=Msa0818580-mRNA-1:cds;Parent=Msa0818580-mRNA-1 |
| chr5_3 | CDS | 54535163 | 54535459 | 54535163 | ID=Msa0818580-mRNA-1:cds;Parent=Msa0818580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
