Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547200 | XP_003606383.1 | 98.246 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547200 | sp|Q9ATM4|PIP27_MAIZE | 86.063 | 287 | 38 | 2 | 1 | 285 | 1 | 287 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547200 | G7JPC5 | 98.246 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0547200 | 0.804931 | 1.704080e-49 | -8.615850e-47 |
| Msa0045620 | Msa0547200 | 0.803936 | 2.747749e-49 | -8.615850e-47 |
| Msa0059880 | Msa0547200 | 0.801063 | 1.074651e-48 | -8.615850e-47 |
| Msa0101170 | Msa0547200 | 0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0104390 | Msa0547200 | -0.818874 | 1.560609e-52 | -8.615850e-47 |
| Msa0131090 | Msa0547200 | -0.804802 | 1.813519e-49 | -8.615850e-47 |
| Msa0170760 | Msa0547200 | 0.807754 | 4.331150e-50 | -8.615850e-47 |
| Msa0183700 | Msa0547200 | 0.807613 | 4.640520e-50 | -8.615850e-47 |
| Msa0187980 | Msa0547200 | -0.807881 | 4.069699e-50 | -8.615850e-47 |
| Msa0188500 | Msa0547200 | -0.811456 | 6.939854e-51 | -8.615850e-47 |
| Msa0200840 | Msa0547200 | -0.812986 | 3.215812e-51 | -8.615850e-47 |
| Msa0200870 | Msa0547200 | -0.810981 | 8.796937e-51 | -8.615850e-47 |
| Msa0219210 | Msa0547200 | 0.807680 | 4.490301e-50 | -8.615850e-47 |
| Msa0223190 | Msa0547200 | -0.810817 | 9.545222e-51 | -8.615850e-47 |
| Msa0225880 | Msa0547200 | -0.845348 | 4.296839e-59 | -8.615850e-47 |
| Msa0230980 | Msa0547200 | -0.826095 | 3.273033e-54 | -8.615850e-47 |
| Msa0377280 | Msa0547200 | -0.809541 | 1.798107e-50 | -8.615850e-47 |
| Msa0404690 | Msa0547200 | -0.816585 | 5.125553e-52 | -8.615850e-47 |
| Msa0416390 | Msa0547200 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0428330 | Msa0547200 | -0.806453 | 8.166318e-50 | -8.615850e-47 |
| Msa0453970 | Msa0547200 | 0.807689 | 4.471116e-50 | -8.615850e-47 |
| Msa0253160 | Msa0547200 | -0.814880 | 1.229775e-51 | -8.615850e-47 |
| Msa0260470 | Msa0547200 | -0.840627 | 7.758982e-58 | -8.615850e-47 |
| Msa0264420 | Msa0547200 | -0.810186 | 1.306375e-50 | -8.615850e-47 |
| Msa0267710 | Msa0547200 | 0.803546 | 3.310623e-49 | -8.615850e-47 |
| Msa0270460 | Msa0547200 | -0.817092 | 3.945765e-52 | -8.615850e-47 |
| Msa0274950 | Msa0547200 | 0.812662 | 3.787702e-51 | -8.615850e-47 |
| Msa0291940 | Msa0547200 | -0.813492 | 2.490479e-51 | -8.615850e-47 |
| Msa0298270 | Msa0547200 | 0.810595 | 1.066240e-50 | -8.615850e-47 |
| Msa0304110 | Msa0547200 | -0.838893 | 2.194044e-57 | -8.615850e-47 |
| Msa0319690 | Msa0547200 | 0.805564 | 1.256213e-49 | -8.615850e-47 |
| Msa0339670 | Msa0547200 | -0.806168 | 9.375722e-50 | -8.615850e-47 |
| Msa0341190 | Msa0547200 | -0.824433 | 8.093601e-54 | -8.615850e-47 |
| Msa0343370 | Msa0547200 | -0.803629 | 3.182522e-49 | -8.615850e-47 |
| Msa0352640 | Msa0547200 | -0.802070 | 6.678950e-49 | -8.615850e-47 |
| Msa0491760 | Msa0547200 | 0.813956 | 1.968760e-51 | -8.615850e-47 |
| Msa0518480 | Msa0547200 | -0.804049 | 2.603460e-49 | -8.615850e-47 |
| Msa0521940 | Msa0547200 | 0.819532 | 1.105215e-52 | -8.615850e-47 |
| Msa0547200 | Msa0580540 | -0.820547 | 6.473703e-53 | -8.615850e-47 |
| Msa0547200 | Msa0601920 | 0.950675 | 1.008928e-108 | -8.615850e-47 |
| Msa0547200 | Msa0604880 | -0.809665 | 1.691369e-50 | -8.615850e-47 |
| Msa0547200 | Msa0621780 | -0.824556 | 7.572804e-54 | -8.615850e-47 |
| Msa0547200 | Msa0623310 | 0.802119 | 6.525149e-49 | -8.615850e-47 |
| Msa0547200 | Msa0630850 | -0.827238 | 1.747224e-54 | -8.615850e-47 |
| Msa0547200 | Msa0643020 | 0.957346 | 3.388140e-115 | -8.615850e-47 |
| Msa0547200 | Msa0648200 | -0.808848 | 2.531140e-50 | -8.615850e-47 |
| Msa0547200 | Msa0659300 | 0.851630 | 7.832748e-61 | -8.615850e-47 |
| Msa0547200 | Msa0681880 | -0.816566 | 5.175748e-52 | -8.615850e-47 |
| Msa0547200 | Msa0682730 | 0.906175 | 1.963216e-80 | -8.615850e-47 |
| Msa0547200 | Msa0691140 | -0.813213 | 2.868479e-51 | -8.615850e-47 |
| Msa0547200 | Msa0715510 | 0.810581 | 1.073281e-50 | -8.615850e-47 |
| Msa0547200 | Msa0775420 | -0.800570 | 1.354851e-48 | -8.615850e-47 |
| Msa0547200 | Msa0791300 | 0.801606 | 8.315795e-49 | -8.615850e-47 |
| Msa0547200 | Msa0795710 | -0.823947 | 1.052520e-53 | -8.615850e-47 |
| Msa0547200 | Msa0803530 | -0.815234 | 1.026153e-51 | -8.615850e-47 |
| Msa0547200 | Msa0818580 | 0.800634 | 1.314385e-48 | -8.615850e-47 |
| Msa0547200 | Msa0833450 | -0.815895 | 7.314203e-52 | -8.615850e-47 |
| Msa0547200 | Msa0879650 | -0.803475 | 3.424926e-49 | -8.615850e-47 |
| Msa0547200 | Msa0893840 | 0.803701 | 3.074415e-49 | -8.615850e-47 |
| Msa0547200 | Msa0975560 | -0.829374 | 5.334766e-55 | -8.615850e-47 |
| Msa0547200 | Msa0982960 | 0.803544 | 3.314607e-49 | -8.615850e-47 |
| Msa0547200 | Msa0999590 | -0.867461 | 1.345476e-65 | -8.615850e-47 |
| Msa0547200 | Msa1040730 | 0.817806 | 2.724525e-52 | -8.615850e-47 |
| Msa0547200 | Msa1053690 | -0.802555 | 5.307222e-49 | -8.615850e-47 |
| Msa0547200 | Msa1107330 | 0.807925 | 3.983731e-50 | -8.615850e-47 |
| Msa0547200 | Msa1122550 | 0.822645 | 2.120883e-53 | -8.615850e-47 |
| Msa0547200 | Msa1150860 | 0.809325 | 2.001027e-50 | -8.615850e-47 |
| Msa0547200 | Msa1194170 | 0.825010 | 5.918172e-54 | -8.615850e-47 |
| Msa0547200 | Msa1211260 | -0.806824 | 6.819043e-50 | -8.615850e-47 |
| Msa0547200 | Msa1211300 | -0.814660 | 1.375956e-51 | -8.615850e-47 |
| Msa0547200 | Msa1211390 | -0.820255 | 7.555384e-53 | -8.615850e-47 |
| Msa0547200 | Msa1229770 | -0.800181 | 1.625808e-48 | -8.615850e-47 |
| Msa0547200 | Msa1237260 | -0.816273 | 6.020600e-52 | -8.615850e-47 |
| Msa0547200 | Msa1240060 | 0.848738 | 5.061806e-60 | -8.615850e-47 |
| Msa0547200 | Msa1243630 | -0.822185 | 2.712047e-53 | -8.615850e-47 |
| Msa0547200 | Msa1244220 | -0.817797 | 2.737038e-52 | -8.615850e-47 |
| Msa0547200 | Msa1281370 | 0.847680 | 9.921225e-60 | -8.615850e-47 |
| Msa0547200 | Msa1299280 | 0.801982 | 6.963560e-49 | -8.615850e-47 |
| Msa0547200 | Msa1317710 | -0.804622 | 1.977152e-49 | -8.615850e-47 |
| Msa0547200 | Msa1320530 | 0.862365 | 5.335420e-64 | -8.615850e-47 |
| Msa0547200 | Msa1342400 | -0.806982 | 6.312395e-50 | -8.615850e-47 |
| Msa0547200 | Msa1348330 | 0.802376 | 5.777288e-49 | -8.615850e-47 |
| Msa0547200 | Msa1363690 | 0.837443 | 5.182080e-57 | -8.615850e-47 |
| Msa0547200 | Msa1370630 | -0.806908 | 6.546558e-50 | -8.615850e-47 |
| Msa0547200 | Msa1370930 | 0.854297 | 1.351787e-61 | -8.615850e-47 |
| Msa0547200 | Msa1371800 | 0.807702 | 4.443435e-50 | -8.615850e-47 |
| Msa0547200 | Msa1376070 | 0.802786 | 4.756358e-49 | -8.615850e-47 |
| Msa0547200 | Msa1396550 | 0.840496 | 8.396318e-58 | -8.615850e-47 |
| Msa0547200 | Msa1403950 | -0.802332 | 5.899922e-49 | -8.615850e-47 |
| Msa0547200 | Msa1413900 | -0.813501 | 2.478780e-51 | -8.615850e-47 |
| Msa0547200 | Msa1421120 | 0.813443 | 2.552932e-51 | -8.615850e-47 |
| Msa0547200 | Msa1427180 | -0.810097 | 1.365651e-50 | -8.615850e-47 |
| Msa0547200 | Msa1445780 | 0.834908 | 2.283269e-56 | -8.615850e-47 |
| Msa0547200 | Msa1450630 | -0.804032 | 2.623952e-49 | -8.615850e-47 |
| Msa0547200 | Msa1460970 | 0.822833 | 1.916659e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547200 | MtrunA17_Chr4g0029071 | 98.246 | 285 | 5 | 0 | 1 | 285 | 1 | 285 | 0.0 | 571 |
| Msa0547200 | MtrunA17_Chr2g0326621 | 85.017 | 287 | 41 | 2 | 1 | 285 | 1 | 287 | 1.04e-180 | 499 |
| Msa0547200 | MtrunA17_Chr1g0199731 | 83.099 | 284 | 48 | 0 | 1 | 284 | 1 | 284 | 1.14e-177 | 491 |
| Msa0547200 | MtrunA17_Chr7g0264111 | 80.702 | 285 | 55 | 0 | 1 | 285 | 1 | 285 | 1.68e-173 | 480 |
| Msa0547200 | MtrunA17_Chr3g0145671 | 77.695 | 269 | 54 | 1 | 16 | 284 | 14 | 276 | 1.19e-155 | 435 |
| Msa0547200 | MtrunA17_Chr8g0386961 | 67.293 | 266 | 80 | 2 | 12 | 276 | 25 | 284 | 5.56e-132 | 375 |
| Msa0547200 | MtrunA17_Chr5g0436701 | 68.015 | 272 | 80 | 3 | 7 | 277 | 23 | 288 | 3.91e-131 | 373 |
| Msa0547200 | MtrunA17_Chr5g0397391 | 68.165 | 267 | 78 | 2 | 12 | 277 | 25 | 285 | 5.78e-131 | 373 |
| Msa0547200 | MtrunA17_Chr4g0006001 | 66.171 | 269 | 85 | 1 | 9 | 277 | 26 | 288 | 9.60e-131 | 372 |
| Msa0547200 | MtrunA17_Chr3g0113211 | 65.217 | 276 | 89 | 2 | 3 | 277 | 19 | 288 | 2.14e-130 | 371 |
| Msa0547200 | MtrunA17_Chr2g0331261 | 38.494 | 239 | 125 | 6 | 39 | 273 | 20 | 240 | 2.74e-39 | 137 |
| Msa0547200 | MtrunA17_Chr8g0340161 | 39.224 | 232 | 119 | 6 | 39 | 266 | 19 | 232 | 2.84e-36 | 130 |
| Msa0547200 | MtrunA17_Chr5g0399341 | 37.712 | 236 | 130 | 5 | 39 | 273 | 19 | 238 | 8.06e-35 | 126 |
| Msa0547200 | MtrunA17_Chr1g0188771 | 36.052 | 233 | 133 | 6 | 39 | 270 | 21 | 238 | 3.01e-32 | 119 |
| Msa0547200 | MtrunA17_Chr7g0264961 | 33.600 | 250 | 149 | 6 | 30 | 278 | 12 | 245 | 9.53e-32 | 118 |
| Msa0547200 | MtrunA17_Chr1g0212671 | 35.366 | 246 | 135 | 7 | 30 | 270 | 12 | 238 | 2.13e-31 | 117 |
| Msa0547200 | MtrunA17_Chr4g0030861 | 33.610 | 241 | 135 | 7 | 44 | 278 | 26 | 247 | 1.96e-30 | 114 |
| Msa0547200 | MtrunA17_Chr6g0478191 | 36.179 | 246 | 135 | 6 | 29 | 270 | 11 | 238 | 3.47e-30 | 114 |
| Msa0547200 | MtrunA17_Chr1g0146171 | 33.462 | 260 | 134 | 11 | 30 | 278 | 10 | 241 | 2.70e-29 | 111 |
| Msa0547200 | MtrunA17_Chr1g0146161 | 34.263 | 251 | 130 | 11 | 30 | 271 | 10 | 234 | 3.33e-28 | 108 |
| Msa0547200 | MtrunA17_Chr7g0222791 | 34.728 | 239 | 132 | 7 | 39 | 272 | 21 | 240 | 3.69e-27 | 106 |
| Msa0547200 | MtrunA17_Chr4g0020781 | 37.778 | 180 | 95 | 5 | 94 | 270 | 30 | 195 | 1.83e-20 | 87.4 |
| Msa0547200 | MtrunA17_Chr5g0435051 | 30.208 | 192 | 114 | 5 | 82 | 269 | 73 | 248 | 2.08e-19 | 85.5 |
| Msa0547200 | MtrunA17_Chr8g0379901 | 30.222 | 225 | 132 | 7 | 37 | 259 | 37 | 238 | 4.51e-19 | 84.7 |
| Msa0547200 | MtrunA17_Chr4g0038591 | 26.641 | 259 | 156 | 8 | 22 | 259 | 27 | 272 | 6.99e-18 | 82.4 |
| Msa0547200 | MtrunA17_Chr5g0426131 | 29.381 | 194 | 124 | 4 | 78 | 269 | 65 | 247 | 1.08e-17 | 80.9 |
| Msa0547200 | MtrunA17_Chr2g0284631 | 29.487 | 234 | 138 | 7 | 39 | 269 | 91 | 300 | 4.57e-17 | 80.1 |
| Msa0547200 | MtrunA17_Chr3g0079421 | 28.646 | 192 | 117 | 5 | 82 | 269 | 59 | 234 | 2.75e-16 | 77.0 |
| Msa0547200 | MtrunA17_Chr8g0379911 | 28.452 | 239 | 143 | 7 | 36 | 271 | 35 | 248 | 5.98e-16 | 75.9 |
| Msa0547200 | MtrunA17_Chr2g0333771 | 28.899 | 218 | 131 | 7 | 43 | 259 | 84 | 278 | 1.31e-15 | 75.5 |
| Msa0547200 | MtrunA17_Chr4g0038611 | 27.962 | 211 | 127 | 7 | 63 | 261 | 14 | 211 | 1.52e-15 | 74.7 |
| Msa0547200 | MtrunA17_Chr7g0217331 | 27.753 | 227 | 134 | 6 | 37 | 259 | 35 | 235 | 2.03e-15 | 74.7 |
| Msa0547200 | MtrunA17_Chr4g0001221 | 27.206 | 272 | 153 | 9 | 21 | 282 | 68 | 304 | 2.09e-15 | 75.1 |
| Msa0547200 | MtrunA17_Chr2g0284611 | 28.444 | 225 | 136 | 6 | 37 | 259 | 36 | 237 | 6.47e-15 | 73.2 |
| Msa0547200 | MtrunA17_Chr2g0284591 | 29.412 | 238 | 140 | 8 | 37 | 271 | 34 | 246 | 1.03e-14 | 72.4 |
| Msa0547200 | MtrunA17_Chr4g0044201 | 29.670 | 182 | 95 | 5 | 82 | 259 | 71 | 223 | 2.30e-14 | 71.2 |
| Msa0547200 | MtrunA17_Chr2g0284601 | 30.928 | 194 | 113 | 7 | 82 | 271 | 24 | 200 | 1.52e-13 | 68.6 |
| Msa0547200 | MtrunA17_Chr1g0201331 | 26.506 | 249 | 160 | 7 | 36 | 283 | 71 | 297 | 2.26e-13 | 68.9 |
| Msa0547200 | MtrunA17_Chr2g0284581 | 29.534 | 193 | 117 | 6 | 82 | 271 | 72 | 248 | 3.64e-13 | 68.2 |
| Msa0547200 | MtrunA17_Chr1g0184541 | 25.833 | 240 | 147 | 7 | 36 | 271 | 59 | 271 | 3.60e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547200 | AT2G37170.2 | 79.649 | 285 | 56 | 1 | 1 | 285 | 44 | 326 | 1.36e-168 | 470 |
| Msa0547200 | AT5G60660.1 | 79.152 | 283 | 59 | 0 | 1 | 283 | 1 | 283 | 1.49e-168 | 468 |
| Msa0547200 | AT2G37170.1 | 79.649 | 285 | 56 | 1 | 1 | 285 | 1 | 283 | 5.68e-168 | 467 |
| Msa0547200 | AT2G37180.1 | 78.596 | 285 | 59 | 1 | 1 | 285 | 1 | 283 | 3.94e-165 | 459 |
| Msa0547200 | AT3G53420.1 | 77.895 | 285 | 63 | 0 | 1 | 285 | 1 | 285 | 1.19e-163 | 456 |
| Msa0547200 | AT3G53420.2 | 77.895 | 285 | 63 | 0 | 1 | 285 | 1 | 285 | 1.19e-163 | 456 |
| Msa0547200 | AT4G35100.1 | 77.224 | 281 | 57 | 2 | 6 | 285 | 4 | 278 | 4.69e-159 | 444 |
| Msa0547200 | AT4G35100.2 | 77.224 | 281 | 57 | 2 | 6 | 285 | 4 | 278 | 4.69e-159 | 444 |
| Msa0547200 | AT2G39010.1 | 74.296 | 284 | 72 | 1 | 1 | 284 | 1 | 283 | 1.01e-158 | 443 |
| Msa0547200 | AT3G54820.1 | 74.648 | 284 | 71 | 1 | 1 | 284 | 1 | 283 | 4.32e-158 | 442 |
| Msa0547200 | AT2G16850.1 | 76.344 | 279 | 59 | 2 | 6 | 284 | 4 | 275 | 5.22e-155 | 434 |
| Msa0547200 | AT4G00430.1 | 67.897 | 271 | 81 | 1 | 7 | 277 | 21 | 285 | 9.60e-133 | 377 |
| Msa0547200 | AT2G45960.1 | 68.182 | 264 | 78 | 1 | 14 | 277 | 27 | 284 | 3.23e-130 | 371 |
| Msa0547200 | AT4G23400.1 | 67.669 | 266 | 80 | 1 | 12 | 277 | 26 | 285 | 3.85e-124 | 356 |
| Msa0547200 | AT1G01620.1 | 69.084 | 262 | 75 | 1 | 16 | 277 | 29 | 284 | 5.58e-124 | 355 |
| Msa0547200 | AT3G61430.2 | 67.424 | 264 | 80 | 1 | 14 | 277 | 27 | 284 | 2.01e-122 | 351 |
| Msa0547200 | AT3G61430.1 | 67.424 | 264 | 80 | 1 | 14 | 277 | 27 | 284 | 2.01e-122 | 351 |
| Msa0547200 | AT2G45960.2 | 70.213 | 235 | 64 | 1 | 14 | 248 | 27 | 255 | 3.02e-117 | 338 |
| Msa0547200 | AT2G45960.3 | 70.213 | 235 | 64 | 1 | 14 | 248 | 27 | 255 | 3.88e-116 | 336 |
| Msa0547200 | AT1G01620.2 | 73.892 | 203 | 53 | 0 | 75 | 277 | 10 | 212 | 2.31e-107 | 310 |
| Msa0547200 | AT2G39010.2 | 72.772 | 202 | 54 | 1 | 1 | 202 | 1 | 201 | 4.97e-106 | 307 |
| Msa0547200 | AT4G00430.2 | 67.692 | 195 | 57 | 1 | 12 | 206 | 26 | 214 | 7.05e-90 | 266 |
| Msa0547200 | AT3G16240.1 | 39.669 | 242 | 120 | 7 | 39 | 274 | 19 | 240 | 5.42e-37 | 132 |
| Msa0547200 | AT5G47450.1 | 37.959 | 245 | 124 | 7 | 36 | 273 | 16 | 239 | 4.68e-36 | 129 |
| Msa0547200 | AT3G26520.1 | 35.510 | 245 | 136 | 8 | 30 | 270 | 13 | 239 | 4.94e-33 | 122 |
| Msa0547200 | AT1G73190.1 | 36.290 | 248 | 135 | 7 | 30 | 270 | 15 | 246 | 1.09e-32 | 121 |
| Msa0547200 | AT4G17340.1 | 36.842 | 247 | 118 | 7 | 39 | 273 | 19 | 239 | 2.88e-32 | 119 |
| Msa0547200 | AT4G01470.1 | 34.677 | 248 | 138 | 6 | 31 | 273 | 13 | 241 | 8.76e-32 | 118 |
| Msa0547200 | AT1G17810.1 | 35.484 | 248 | 137 | 7 | 30 | 270 | 15 | 246 | 5.15e-31 | 117 |
| Msa0547200 | AT2G36830.1 | 34.156 | 243 | 136 | 7 | 30 | 267 | 12 | 235 | 1.24e-30 | 115 |
| Msa0547200 | AT2G25810.1 | 35.081 | 248 | 129 | 11 | 30 | 270 | 10 | 232 | 3.27e-26 | 103 |
| Msa0547200 | AT3G47440.1 | 31.780 | 236 | 138 | 7 | 39 | 270 | 23 | 239 | 4.34e-24 | 98.6 |
| Msa0547200 | AT4G19030.1 | 28.030 | 264 | 159 | 8 | 3 | 259 | 22 | 261 | 3.53e-17 | 80.1 |
| Msa0547200 | AT1G31885.1 | 28.794 | 257 | 148 | 8 | 24 | 273 | 34 | 262 | 4.11e-17 | 80.5 |
| Msa0547200 | AT5G37820.1 | 28.571 | 189 | 121 | 4 | 82 | 269 | 77 | 252 | 7.07e-15 | 73.6 |
| Msa0547200 | AT5G37810.1 | 27.128 | 188 | 125 | 3 | 82 | 269 | 77 | 252 | 8.51e-15 | 73.2 |
| Msa0547200 | AT5G37820.2 | 28.571 | 189 | 121 | 4 | 82 | 269 | 113 | 288 | 1.06e-14 | 73.6 |
| Msa0547200 | AT1G31885.2 | 29.557 | 203 | 123 | 6 | 78 | 273 | 19 | 208 | 4.83e-14 | 70.9 |
| Msa0547200 | AT2G34390.1 | 26.616 | 263 | 155 | 10 | 15 | 269 | 31 | 263 | 5.35e-14 | 71.2 |
| Msa0547200 | AT4G10380.1 | 26.877 | 253 | 155 | 9 | 36 | 282 | 75 | 303 | 7.43e-14 | 70.9 |
| Msa0547200 | AT2G34390.2 | 28.141 | 199 | 123 | 5 | 78 | 269 | 36 | 221 | 1.85e-13 | 68.9 |
| Msa0547200 | AT3G06100.1 | 28.205 | 234 | 141 | 8 | 39 | 269 | 46 | 255 | 4.58e-12 | 65.5 |
| Msa0547200 | AT4G18910.1 | 25.483 | 259 | 171 | 6 | 5 | 259 | 18 | 258 | 6.55e-12 | 65.1 |
| Msa0547200 | AT3G06100.2 | 29.185 | 233 | 134 | 10 | 42 | 269 | 1 | 207 | 7.78e-11 | 61.2 |
Find 123 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATTATGATTAAATTTC+TGG | 0.072594 | 4_1:+40032632 | Msa0547200:three_prime_UTR |
| TTGGGTATTGCTTGGGCTTT+TGG | 0.189425 | 4_1:+40030070 | Msa0547200:CDS |
| CTGTGATGGTGTTGGAATTT+TGG | 0.191069 | 4_1:+40030051 | Msa0547200:CDS |
| TCTACAATGACGGCAAAATT+TGG | 0.226952 | 4_1:+40031221 | Msa0547200:CDS |
| GAGTCCCTAGCGTTTCTCTT+AGG | 0.240191 | 4_1:-40030976 | None:intergenic |
| GAAGGATCCAAGAGCTTTAA+TGG | 0.276736 | 4_1:-40032133 | None:intergenic |
| ACTCTTCAACATTATTCTTT+TGG | 0.296879 | 4_1:-40032228 | None:intergenic |
| GCTGCAACTGCAGTGGGGTT+TGG | 0.298902 | 4_1:+40032297 | Msa0547200:three_prime_UTR |
| GTGATGAACAGTGGATATTC+TGG | 0.300046 | 4_1:+40032046 | Msa0547200:intron |
| ATCAACCCTGCCGTGACATT+CGG | 0.320599 | 4_1:+40030721 | Msa0547200:CDS |
| ATTTCATGGTCCCTTGTTAT+TGG | 0.323317 | 4_1:-40032331 | None:intergenic |
| ATTAACCCGGCAAGAAGTTT+CGG | 0.346372 | 4_1:+40031187 | Msa0547200:CDS |
| TTCTGGGTTGGTCCAATGAT+TGG | 0.360668 | 4_1:+40032063 | Msa0547200:CDS |
| AAAGCATACTTTGACAGATA+TGG | 0.361824 | 4_1:+40030847 | Msa0547200:CDS |
| AGTTTCTGCTTGTGTATCCT+TGG | 0.365134 | 4_1:+40032473 | Msa0547200:three_prime_UTR |
| TTAATACCGGTGCCGGTAAT+GGG | 0.367427 | 4_1:-40031169 | None:intergenic |
| GTAGTGGATTGAATTGAGTA+TGG | 0.369597 | 4_1:-40029766 | None:intergenic |
| CATGGTTATCTACAATTTCA+TGG | 0.370052 | 4_1:-40032345 | None:intergenic |
| TTAAAGCTCTTGGATCCTTC+AGG | 0.374939 | 4_1:+40032136 | Msa0547200:CDS |
| CAGTCAGTACCACCAGCTTT+AGG | 0.379125 | 4_1:-40030031 | None:intergenic |
| ACGGAAGGTGTCCTTGATTA+GGG | 0.379672 | 4_1:+40030756 | Msa0547200:CDS |
| GACGGAAGGTGTCCTTGATT+AGG | 0.381530 | 4_1:+40030755 | Msa0547200:CDS |
| TACAACAAAGGCACAGCTTT+GGG | 0.390836 | 4_1:+40030898 | Msa0547200:CDS |
| TTAAAGAGAACTAAGCAATA+TGG | 0.391816 | 4_1:+40029811 | Msa0547200:exon |
| ACAAGGATGGAAGATAAATA+TGG | 0.392238 | 4_1:-40032527 | None:intergenic |
| GCTGATCCGAAACTTCTTGC+CGG | 0.395043 | 4_1:-40031193 | None:intergenic |
| GCCACAGCAGCTCCAATCAT+TGG | 0.399751 | 4_1:-40032075 | None:intergenic |
| TACTGCACCGCCGGTATCTC+TGG | 0.401254 | 4_1:+40030115 | Msa0547200:CDS |
| AGTCCCTAGCGTTTCTCTTA+GGG | 0.401907 | 4_1:-40030975 | None:intergenic |
| CTACAATGACGGCAAAATTT+GGG | 0.403017 | 4_1:+40031222 | Msa0547200:CDS |
| CACTGCAGTTGCAGCTGAAA+AGG | 0.408278 | 4_1:-40032289 | None:intergenic |
| TGGTCAAAACAGTGACATAA+AGG | 0.409034 | 4_1:-40029982 | None:intergenic |
| GGTTCAGCCATTAAAGCTCT+TGG | 0.411321 | 4_1:+40032126 | Msa0547200:CDS |
| TCAACCCTGCCGTGACATTC+GGG | 0.414133 | 4_1:+40030722 | Msa0547200:CDS |
| GTTAATACCGGTGCCGGTAA+TGG | 0.415684 | 4_1:-40031170 | None:intergenic |
| ATGATTGGAGCTGCTGTGGC+TGG | 0.418679 | 4_1:+40032078 | Msa0547200:CDS |
| CGGCAAAATTTGGGATGATC+AGG | 0.427962 | 4_1:+40031231 | Msa0547200:CDS |
| TTGGAAACCTTTGGCAAGTC+CGG | 0.439461 | 4_1:-40030824 | None:intergenic |
| TCTATCAATGGTGCTGGAGG+TGG | 0.446868 | 4_1:-40029890 | None:intergenic |
| CTACAACAAAGGCACAGCTT+TGG | 0.447010 | 4_1:+40030897 | Msa0547200:CDS |
| TTGGCTACTATCCCCATTAC+CGG | 0.452301 | 4_1:+40031157 | Msa0547200:CDS |
| CAAATTAAGTGGTCCTATCC+TGG | 0.455671 | 4_1:+40032252 | Msa0547200:three_prime_UTR |
| ATAACCATGCTTGTGTTTCA+AGG | 0.457885 | 4_1:+40032359 | Msa0547200:three_prime_UTR |
| ACTTCTTGCCGGGTTAATAC+CGG | 0.464164 | 4_1:-40031182 | None:intergenic |
| ATTCATGATGGCTACAACAA+AGG | 0.473294 | 4_1:+40030886 | Msa0547200:CDS |
| ATGGTGCTGGAGGTGGGTCT+TGG | 0.480203 | 4_1:-40029883 | None:intergenic |
| TGATGAACAGTGGATATTCT+GGG | 0.485567 | 4_1:+40032047 | Msa0547200:intron |
| CTGAACCTCTTAGAATGTAT+TGG | 0.489928 | 4_1:-40032110 | None:intergenic |
| TACATGGCAGCACAGTGTGC+CGG | 0.490463 | 4_1:+40030787 | Msa0547200:CDS |
| CTGATCCGAAACTTCTTGCC+GGG | 0.491559 | 4_1:-40031192 | None:intergenic |
| CTGAAAAGGAAAAGACGAAA+AGG | 0.494274 | 4_1:-40032275 | None:intergenic |
| CTGGTGACTATAACCAATAA+TGG | 0.494832 | 4_1:-40030002 | None:intergenic |
| ATCCTTGTTTACTGCACCGC+CGG | 0.495855 | 4_1:+40030106 | Msa0547200:CDS |
| GCAACTGCAGTGGGGTTTGG+AGG | 0.503181 | 4_1:+40032300 | Msa0547200:three_prime_UTR |
| AATTAACATCATAGCTTGGT+TGG | 0.506194 | 4_1:-40032202 | None:intergenic |
| GAGAAATTAACATCATAGCT+TGG | 0.506683 | 4_1:-40032206 | None:intergenic |
| AATCCACTACTCTCTCACTT+TGG | 0.509855 | 4_1:+40029779 | Msa0547200:five_prime_UTR |
| GTTGAAGAGTGCAAATTAAG+TGG | 0.512272 | 4_1:+40032241 | Msa0547200:three_prime_UTR |
| TGCCGGGTTAATACCGGTGC+CGG | 0.514335 | 4_1:-40031176 | None:intergenic |
| GCCGGCGCAATCTGTGGTAC+CGG | 0.516181 | 4_1:+40030805 | Msa0547200:CDS |
| CGTGACATTCGGGCTATTCG+TGG | 0.516571 | 4_1:+40030732 | Msa0547200:CDS |
| AACTCCTCAACATCTATCAA+TGG | 0.521123 | 4_1:-40029902 | None:intergenic |
| TCAACATCTATCAATGGTGC+TGG | 0.524124 | 4_1:-40029896 | None:intergenic |
| GTAAAACACTGCCCTAATCA+AGG | 0.525985 | 4_1:-40030767 | None:intergenic |
| TACCACCAATACATTCTAAG+AGG | 0.529657 | 4_1:+40032105 | Msa0547200:CDS |
| AAAGACGAAAAGGCCAGGAT+AGG | 0.530432 | 4_1:-40032265 | None:intergenic |
| CTATAGCATACCAGAGATAC+CGG | 0.531115 | 4_1:-40030125 | None:intergenic |
| TCCAATGATTGGAGCTGCTG+TGG | 0.531304 | 4_1:+40032074 | Msa0547200:CDS |
| GTAGCCATCATGAATAAAGT+TGG | 0.531597 | 4_1:-40030878 | None:intergenic |
| TAACCATGCTTGTGTTTCAA+GGG | 0.531821 | 4_1:+40032360 | Msa0547200:three_prime_UTR |
| GCTTTGGGTGCTGAAATCAT+TGG | 0.533586 | 4_1:+40030913 | Msa0547200:CDS |
| GGTGCCAACTTTATTCATGA+TGG | 0.535166 | 4_1:+40030874 | Msa0547200:CDS |
| TAGGAATTGAATACATACAT+TGG | 0.552401 | 4_1:-40032437 | None:intergenic |
| CTATCAATGGTGCTGGAGGT+GGG | 0.552912 | 4_1:-40029889 | None:intergenic |
| AATAGCCCGAATGTCACGGC+AGG | 0.553742 | 4_1:-40030727 | None:intergenic |
| ATGAAAACAGCAAATCCAAT+GGG | 0.555341 | 4_1:-40031127 | None:intergenic |
| CACCAGTCTGATCCTAAAGC+TGG | 0.557436 | 4_1:+40030019 | Msa0547200:CDS |
| TAATTAAGCATTGCTCCTGA+AGG | 0.559103 | 4_1:-40032151 | None:intergenic |
| AACCTCTTAGAATGTATTGG+TGG | 0.561973 | 4_1:-40032107 | None:intergenic |
| CGGGCTATTCGTGGGACGGA+AGG | 0.562748 | 4_1:+40030741 | Msa0547200:CDS |
| TTTGCCGTCATTGTAGATCA+CGG | 0.565178 | 4_1:-40031215 | None:intergenic |
| ACTATCCCCATTACCGGCAC+CGG | 0.571652 | 4_1:+40031163 | Msa0547200:CDS |
| GGTACTGACTGTGATGGTGT+TGG | 0.572709 | 4_1:+40030043 | Msa0547200:CDS |
| ACAGCAAATCCAATGGGAAG+TGG | 0.574194 | 4_1:-40031121 | None:intergenic |
| AGCACCATTGATAGATGTTG+AGG | 0.575497 | 4_1:+40029898 | Msa0547200:CDS |
| AAGGAAAAGACGAAAAGGCC+AGG | 0.575632 | 4_1:-40032270 | None:intergenic |
| TACCGGCGGTGCAGTAAACA+AGG | 0.576199 | 4_1:-40030108 | None:intergenic |
| GATGTTGAGGTTCAAGAACA+AGG | 0.576725 | 4_1:+40029839 | Msa0547200:CDS |
| CAGTGTGCCGGCGCAATCTG+TGG | 0.577018 | 4_1:+40030799 | Msa0547200:CDS |
| TTTCCAAAGTGAGAGAGTAG+TGG | 0.580171 | 4_1:-40029782 | None:intergenic |
| CACGAATAGCCCGAATGTCA+CGG | 0.582521 | 4_1:-40030731 | None:intergenic |
| ATTATATGCTTACAGGAACA+TGG | 0.583004 | 4_1:-40030999 | None:intergenic |
| TACGAAATTCACAACAAGGA+TGG | 0.583292 | 4_1:-40032540 | None:intergenic |
| CAATATGGCTAAAGATGTTG+AGG | 0.583700 | 4_1:+40029826 | Msa0547200:exon |
| ACATCTATCAATGGTGCTGG+AGG | 0.589837 | 4_1:-40029893 | None:intergenic |
| TACCGGCACCGGTATTAACC+CGG | 0.590468 | 4_1:+40031174 | Msa0547200:CDS |
| TAATACCGGTGCCGGTAATG+GGG | 0.593819 | 4_1:-40031168 | None:intergenic |
| TGTGGTACCGGACTTGCCAA+AGG | 0.598591 | 4_1:+40030817 | Msa0547200:CDS |
| CATGAAAACAGCAAATCCAA+TGG | 0.600094 | 4_1:-40031128 | None:intergenic |
| AGTATGGTTTGAGTAGAATG+AGG | 0.605313 | 4_1:-40029750 | None:intergenic |
| TACTTTGACAGATATGGAGG+TGG | 0.607215 | 4_1:+40030853 | Msa0547200:CDS |
| GTGACATTCGGGCTATTCGT+GGG | 0.608893 | 4_1:+40030733 | Msa0547200:CDS |
| GAAACTAAAGTGAAACACAT+AGG | 0.609176 | 4_1:-40032456 | None:intergenic |
| GAGAAATTTGAAAATGACCA+AGG | 0.617654 | 4_1:-40032490 | None:intergenic |
| CACCAGCTTTAGGATCAGAC+TGG | 0.622507 | 4_1:-40030021 | None:intergenic |
| CTGACCCTAAGAGAAACGCT+AGG | 0.623716 | 4_1:+40030971 | Msa0547200:CDS |
| TCCGGTACCACAGATTGCGC+CGG | 0.626783 | 4_1:-40030806 | None:intergenic |
| GACAGTGTAGACAAGAACAA+AGG | 0.629321 | 4_1:-40030938 | None:intergenic |
| ATGGTTTGAGTAGAATGAGG+TGG | 0.633776 | 4_1:-40029747 | None:intergenic |
| GCATACTTTGACAGATATGG+AGG | 0.633916 | 4_1:+40030850 | Msa0547200:CDS |
| CATTCGGGCTATTCGTGGGA+CGG | 0.637960 | 4_1:+40030737 | Msa0547200:CDS |
| TTGATACGAAATTCACAACA+AGG | 0.639033 | 4_1:-40032544 | None:intergenic |
| TTATATGCTTACAGGAACAT+GGG | 0.643732 | 4_1:-40030998 | None:intergenic |
| CAGTCTGATCCTAAAGCTGG+TGG | 0.645930 | 4_1:+40030022 | Msa0547200:CDS |
| TGACCCTAAGAGAAACGCTA+GGG | 0.652651 | 4_1:+40030972 | Msa0547200:CDS |
| GCTGGTGGTACTGACTGTGA+TGG | 0.654915 | 4_1:+40030037 | Msa0547200:CDS |
| TTTCAGCTGCAACTGCAGTG+GGG | 0.659904 | 4_1:+40032292 | Msa0547200:three_prime_UTR |
| GAACAGTGGATATTCTGGGT+TGG | 0.667916 | 4_1:+40032051 | Msa0547200:intron |
| ACACCCTTGAAACACAAGCA+TGG | 0.669719 | 4_1:-40032363 | None:intergenic |
| ATAGCCCGAATGTCACGGCA+GGG | 0.681726 | 4_1:-40030726 | None:intergenic |
| TCAGCCGTGATCTACAATGA+CGG | 0.682863 | 4_1:+40031211 | Msa0547200:CDS |
| ATGTTGAGGAGTTAACAAAG+TGG | 0.737517 | 4_1:+40029912 | Msa0547200:CDS |
| TAGCATACCAGAGATACCGG+CGG | 0.780077 | 4_1:-40030122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTTGCTATTAAATT+TGG | + | chr4_1:40030182-40030201 | Msa0547200:intron | 10.0% |
| !! | CAAAAACATAATTAATTATA+TGG | - | chr4_1:40031264-40031283 | None:intergenic | 10.0% |
| !!! | CATATAATTAATTATGTTTT+TGG | + | chr4_1:40031262-40031281 | Msa0547200:intron | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4_1:40031642-40031661 | Msa0547200:intron | 10.0% |
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | + | chr4_1:40031703-40031722 | Msa0547200:intron | 10.0% |
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | + | chr4_1:40031704-40031723 | Msa0547200:intron | 10.0% |
| !! | CACTTTAATTAATAATTTAA+GGG | - | chr4_1:40031807-40031826 | None:intergenic | 10.0% |
| !! | TCACTTTAATTAATAATTTA+AGG | - | chr4_1:40031808-40031827 | None:intergenic | 10.0% |
| !!! | TTACAATATGAAAGTTTTAT+AGG | + | chr4_1:40030408-40030427 | Msa0547200:intron | 15.0% |
| !! | TGATAAAATACAAACAAATA+TGG | - | chr4_1:40030473-40030492 | None:intergenic | 15.0% |
| !!! | TTTTATAGATAAATGTTAGT+TGG | + | chr4_1:40030645-40030664 | Msa0547200:intron | 15.0% |
| !! | ATGCTATTAAAATTAAGTAA+GGG | - | chr4_1:40031734-40031753 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr4_1:40031733-40031752 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr4_1:40031392-40031411 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4_1:40031476-40031495 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr4_1:40031511-40031530 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr4_1:40031670-40031689 | Msa0547200:intron | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr4_1:40031671-40031690 | Msa0547200:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr4_1:40031733-40031752 | Msa0547200:intron | 15.0% |
| !!! | TTAAAGTCTTCTAAAATAAA+CGG | - | chr4_1:40031851-40031870 | None:intergenic | 15.0% |
| !!! | TATTTTAGAAGACTTTAATT+AGG | + | chr4_1:40031853-40031872 | Msa0547200:intron | 15.0% |
| !! | TAAAGTTTGTCTATAATATA+AGG | - | chr4_1:40031892-40031911 | None:intergenic | 15.0% |
| !! | GTTTATAATTATATGCTTAC+AGG | - | chr4_1:40031009-40031028 | None:intergenic | 20.0% |
| !! | AGTACTTATTATGAAGAAAA+AGG | - | chr4_1:40031051-40031070 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4_1:40031422-40031441 | Msa0547200:intron | 20.0% |
| !!! | TTAAGGGTTAATTATGTTTT+TGG | - | chr4_1:40031791-40031810 | None:intergenic | 20.0% |
| !! | AATGAAAAAAAGACACAAAA+GGG | - | chr4_1:40032398-40032417 | None:intergenic | 20.0% |
| !! | AAATGAAAAAAAGACACAAA+AGG | - | chr4_1:40032399-40032418 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAACTCAAGTCA+AGG | - | chr4_1:40032612-40032631 | None:intergenic | 20.0% |
| ! | TTAAAGAGAACTAAGCAATA+TGG | + | chr4_1:40029811-40029830 | Msa0547200:exon | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr4_1:40031381-40031400 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4_1:40031446-40031465 | Msa0547200:intron | 25.0% |
| ! | AGAAGACTTTAATTAGGTTT+AGG | + | chr4_1:40031859-40031878 | Msa0547200:intron | 25.0% |
| !! | ACTCTTCAACATTATTCTTT+TGG | - | chr4_1:40032231-40032250 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAACCAATAACA+AGG | + | chr4_1:40032320-40032339 | Msa0547200:three_prime_UTR | 25.0% |
| ! | GGAAAAAAAACCAATAACAA+GGG | + | chr4_1:40032321-40032340 | Msa0547200:three_prime_UTR | 25.0% |
| ! | TAGGAATTGAATACATACAT+TGG | - | chr4_1:40032440-40032459 | None:intergenic | 25.0% |
| !!! | TTCATCTTCTTTTTCGATCA+GGG | - | chr4_1:40030313-40030332 | None:intergenic | 30.0% |
| !!! | TTTCATCTTCTTTTTCGATC+AGG | - | chr4_1:40030314-40030333 | None:intergenic | 30.0% |
| TGAAGCATAATTCCATATTG+CGG | + | chr4_1:40030385-40030404 | Msa0547200:intron | 30.0% | |
| TTCATATTGTAACCGCAATA+TGG | - | chr4_1:40030400-40030419 | None:intergenic | 30.0% | |
| GTTGTAGTTACAATTAAGCT+AGG | - | chr4_1:40030509-40030528 | None:intergenic | 30.0% | |
| ! | ATCTGTCAAAGTATGCTTTT+TGG | - | chr4_1:40030846-40030865 | None:intergenic | 30.0% |
| AAAGCATACTTTGACAGATA+TGG | + | chr4_1:40030847-40030866 | Msa0547200:CDS | 30.0% | |
| TTATATGCTTACAGGAACAT+GGG | - | chr4_1:40031001-40031020 | None:intergenic | 30.0% | |
| ATTATATGCTTACAGGAACA+TGG | - | chr4_1:40031002-40031021 | None:intergenic | 30.0% | |
| AGCATAACTAACTATGTGTT+TGG | + | chr4_1:40031074-40031093 | Msa0547200:intron | 30.0% | |
| ! | TGTTTGGTGAAATGATGAAA+AGG | + | chr4_1:40031090-40031109 | Msa0547200:intron | 30.0% |
| ! | GTGAAATGATGAAAAGGTTT+TGG | + | chr4_1:40031096-40031115 | Msa0547200:intron | 30.0% |
| ATGAAAACAGCAAATCCAAT+GGG | - | chr4_1:40031130-40031149 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr4_1:40031349-40031368 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr4_1:40031350-40031369 | None:intergenic | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4_1:40031473-40031492 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+CGG | - | chr4_1:40031608-40031627 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr4_1:40031748-40031767 | Msa0547200:intron | 30.0% | |
| ! | TTACAAGGTTGCAATTTTGT+AGG | + | chr4_1:40031763-40031782 | Msa0547200:intron | 30.0% |
| ! | TACAAGGTTGCAATTTTGTA+GGG | + | chr4_1:40031764-40031783 | Msa0547200:intron | 30.0% |
| !!! | ATTGTTTTTGTGATGAACAG+TGG | + | chr4_1:40032037-40032056 | Msa0547200:intron | 30.0% |
| AATTAACATCATAGCTTGGT+TGG | - | chr4_1:40032205-40032224 | None:intergenic | 30.0% | |
| GAGAAATTAACATCATAGCT+TGG | - | chr4_1:40032209-40032228 | None:intergenic | 30.0% | |
| CATGGTTATCTACAATTTCA+TGG | - | chr4_1:40032348-40032367 | None:intergenic | 30.0% | |
| GAAACTAAAGTGAAACACAT+AGG | - | chr4_1:40032459-40032478 | None:intergenic | 30.0% | |
| GAGAAATTTGAAAATGACCA+AGG | - | chr4_1:40032493-40032512 | None:intergenic | 30.0% | |
| ACAAGGATGGAAGATAAATA+TGG | - | chr4_1:40032530-40032549 | None:intergenic | 30.0% | |
| TTGATACGAAATTCACAACA+AGG | - | chr4_1:40032547-40032566 | None:intergenic | 30.0% | |
| AGTATGGTTTGAGTAGAATG+AGG | - | chr4_1:40029753-40029772 | None:intergenic | 35.0% | |
| !! | GTAGTGGATTGAATTGAGTA+TGG | - | chr4_1:40029769-40029788 | None:intergenic | 35.0% |
| CAATATGGCTAAAGATGTTG+AGG | + | chr4_1:40029826-40029845 | Msa0547200:exon | 35.0% | |
| AACTCCTCAACATCTATCAA+TGG | - | chr4_1:40029905-40029924 | None:intergenic | 35.0% | |
| ATGTTGAGGAGTTAACAAAG+TGG | + | chr4_1:40029912-40029931 | Msa0547200:CDS | 35.0% | |
| TGGTCAAAACAGTGACATAA+AGG | - | chr4_1:40029985-40030004 | None:intergenic | 35.0% | |
| !!! | GTCACTGTTTTGACCATTAT+TGG | + | chr4_1:40029989-40030008 | Msa0547200:CDS | 35.0% |
| CTGGTGACTATAACCAATAA+TGG | - | chr4_1:40030005-40030024 | None:intergenic | 35.0% | |
| !! | TGTGATGGTGTTGGAATTTT+GGG | + | chr4_1:40030052-40030071 | Msa0547200:CDS | 35.0% |
| !! | TTGGAATTTTGGGTATTGCT+TGG | + | chr4_1:40030062-40030081 | Msa0547200:CDS | 35.0% |
| !! | TGGAATTTTGGGTATTGCTT+GGG | + | chr4_1:40030063-40030082 | Msa0547200:CDS | 35.0% |
| CTGAGATAGTAAAAGATTGC+AGG | + | chr4_1:40030268-40030287 | Msa0547200:intron | 35.0% | |
| ATGTGTGAAATTGTGATCAC+AGG | + | chr4_1:40030691-40030710 | Msa0547200:intron | 35.0% | |
| !! | GTATGCTTTTTGGAAACCTT+TGG | - | chr4_1:40030836-40030855 | None:intergenic | 35.0% |
| GTAGCCATCATGAATAAAGT+TGG | - | chr4_1:40030881-40030900 | None:intergenic | 35.0% | |
| ATTCATGATGGCTACAACAA+AGG | + | chr4_1:40030886-40030905 | Msa0547200:CDS | 35.0% | |
| CATGAAAACAGCAAATCCAA+TGG | - | chr4_1:40031131-40031150 | None:intergenic | 35.0% | |
| !!! | CATTGGATTTGCTGTTTTCA+TGG | + | chr4_1:40031129-40031148 | Msa0547200:CDS | 35.0% |
| TCTACAATGACGGCAAAATT+TGG | + | chr4_1:40031221-40031240 | Msa0547200:CDS | 35.0% | |
| CTACAATGACGGCAAAATTT+GGG | + | chr4_1:40031222-40031241 | Msa0547200:CDS | 35.0% | |
| !!! | TGTTTTTGGTCCCTACAAAA+TGG | + | chr4_1:40031276-40031295 | Msa0547200:intron | 35.0% |
| AAGTAAGGGCTAAACTTACA+AGG | - | chr4_1:40031305-40031324 | None:intergenic | 35.0% | |
| TGATGAACAGTGGATATTCT+GGG | + | chr4_1:40032047-40032066 | Msa0547200:intron | 35.0% | |
| TACCACCAATACATTCTAAG+AGG | + | chr4_1:40032105-40032124 | Msa0547200:CDS | 35.0% | |
| AACCTCTTAGAATGTATTGG+TGG | - | chr4_1:40032110-40032129 | None:intergenic | 35.0% | |
| CTGAACCTCTTAGAATGTAT+TGG | - | chr4_1:40032113-40032132 | None:intergenic | 35.0% | |
| ! | TAATTAAGCATTGCTCCTGA+AGG | - | chr4_1:40032154-40032173 | None:intergenic | 35.0% |
| ! | GTTGAAGAGTGCAAATTAAG+TGG | + | chr4_1:40032241-40032260 | Msa0547200:three_prime_UTR | 35.0% |
| CTGAAAAGGAAAAGACGAAA+AGG | - | chr4_1:40032278-40032297 | None:intergenic | 35.0% | |
| ! | ATTTCATGGTCCCTTGTTAT+TGG | - | chr4_1:40032334-40032353 | None:intergenic | 35.0% |
| ATAACCATGCTTGTGTTTCA+AGG | + | chr4_1:40032359-40032378 | Msa0547200:three_prime_UTR | 35.0% | |
| TAACCATGCTTGTGTTTCAA+GGG | + | chr4_1:40032360-40032379 | Msa0547200:three_prime_UTR | 35.0% | |
| TACGAAATTCACAACAAGGA+TGG | - | chr4_1:40032543-40032562 | None:intergenic | 35.0% | |
| ATGGTTTGAGTAGAATGAGG+TGG | - | chr4_1:40029750-40029769 | None:intergenic | 40.0% | |
| AATCCACTACTCTCTCACTT+TGG | + | chr4_1:40029779-40029798 | Msa0547200:five_prime_UTR | 40.0% | |
| TTTCCAAAGTGAGAGAGTAG+TGG | - | chr4_1:40029785-40029804 | None:intergenic | 40.0% | |
| GATGTTGAGGTTCAAGAACA+AGG | + | chr4_1:40029839-40029858 | Msa0547200:CDS | 40.0% | |
| TCAACATCTATCAATGGTGC+TGG | - | chr4_1:40029899-40029918 | None:intergenic | 40.0% | |
| AGCACCATTGATAGATGTTG+AGG | + | chr4_1:40029898-40029917 | Msa0547200:CDS | 40.0% | |
| !! | CTGTGATGGTGTTGGAATTT+TGG | + | chr4_1:40030051-40030070 | Msa0547200:CDS | 40.0% |
| CTATAGCATACCAGAGATAC+CGG | - | chr4_1:40030128-40030147 | None:intergenic | 40.0% | |
| TGCATGTGTAATAGAGTGAG+AGG | - | chr4_1:40030154-40030173 | None:intergenic | 40.0% | |
| ATGGCATGCAACCACAATTA+GGG | - | chr4_1:40030454-40030473 | None:intergenic | 40.0% | |
| TATGGCATGCAACCACAATT+AGG | - | chr4_1:40030455-40030474 | None:intergenic | 40.0% | |
| TGTGAAATTGTGATCACAGG+AGG | + | chr4_1:40030694-40030713 | Msa0547200:intron | 40.0% | |
| GTAAAACACTGCCCTAATCA+AGG | - | chr4_1:40030770-40030789 | None:intergenic | 40.0% | |
| ! | GATTAGGGCAGTGTTTTACA+TGG | + | chr4_1:40030771-40030790 | Msa0547200:CDS | 40.0% |
| GCATACTTTGACAGATATGG+AGG | + | chr4_1:40030850-40030869 | Msa0547200:CDS | 40.0% | |
| TACTTTGACAGATATGGAGG+TGG | + | chr4_1:40030853-40030872 | Msa0547200:CDS | 40.0% | |
| GGTGCCAACTTTATTCATGA+TGG | + | chr4_1:40030874-40030893 | Msa0547200:CDS | 40.0% | |
| ! | TACAACAAAGGCACAGCTTT+GGG | + | chr4_1:40030898-40030917 | Msa0547200:CDS | 40.0% |
| GACAGTGTAGACAAGAACAA+AGG | - | chr4_1:40030941-40030960 | None:intergenic | 40.0% | |
| !!! | TGCTGTTTTCATGGTTCACT+TGG | + | chr4_1:40031138-40031157 | Msa0547200:CDS | 40.0% |
| ATTAACCCGGCAAGAAGTTT+CGG | + | chr4_1:40031187-40031206 | Msa0547200:CDS | 40.0% | |
| TTTGCCGTCATTGTAGATCA+CGG | - | chr4_1:40031218-40031237 | None:intergenic | 40.0% | |
| !! | TACAAGGTCGCCATTTTGTA+GGG | - | chr4_1:40031289-40031308 | None:intergenic | 40.0% |
| !! | TTACAAGGTCGCCATTTTGT+AGG | - | chr4_1:40031290-40031309 | None:intergenic | 40.0% |
| GTGATGAACAGTGGATATTC+TGG | + | chr4_1:40032046-40032065 | Msa0547200:intron | 40.0% | |
| ! | GAAGGATCCAAGAGCTTTAA+TGG | - | chr4_1:40032136-40032155 | None:intergenic | 40.0% |
| TTAAAGCTCTTGGATCCTTC+AGG | + | chr4_1:40032136-40032155 | Msa0547200:CDS | 40.0% | |
| CAAATTAAGTGGTCCTATCC+TGG | + | chr4_1:40032252-40032271 | Msa0547200:three_prime_UTR | 40.0% | |
| AGTTTCTGCTTGTGTATCCT+TGG | + | chr4_1:40032473-40032492 | Msa0547200:three_prime_UTR | 40.0% | |
| ! | ACATCTATCAATGGTGCTGG+AGG | - | chr4_1:40029896-40029915 | None:intergenic | 45.0% |
| !! | TTGGGTATTGCTTGGGCTTT+TGG | + | chr4_1:40030070-40030089 | Msa0547200:CDS | 45.0% |
| CGACATAGCAACCCTAATTG+TGG | + | chr4_1:40030440-40030459 | Msa0547200:intron | 45.0% | |
| !! | ACGGAAGGTGTCCTTGATTA+GGG | + | chr4_1:40030756-40030775 | Msa0547200:CDS | 45.0% |
| TTGGAAACCTTTGGCAAGTC+CGG | - | chr4_1:40030827-40030846 | None:intergenic | 45.0% | |
| ! | CTACAACAAAGGCACAGCTT+TGG | + | chr4_1:40030897-40030916 | Msa0547200:CDS | 45.0% |
| !! | GCTTTGGGTGCTGAAATCAT+TGG | + | chr4_1:40030913-40030932 | Msa0547200:CDS | 45.0% |
| TGACCCTAAGAGAAACGCTA+GGG | + | chr4_1:40030972-40030991 | Msa0547200:CDS | 45.0% | |
| AGTCCCTAGCGTTTCTCTTA+GGG | - | chr4_1:40030978-40030997 | None:intergenic | 45.0% | |
| ACAGCAAATCCAATGGGAAG+TGG | - | chr4_1:40031124-40031143 | None:intergenic | 45.0% | |
| TTGGCTACTATCCCCATTAC+CGG | + | chr4_1:40031157-40031176 | Msa0547200:CDS | 45.0% | |
| !! | TTAATACCGGTGCCGGTAAT+GGG | - | chr4_1:40031172-40031191 | None:intergenic | 45.0% |
| ACTTCTTGCCGGGTTAATAC+CGG | - | chr4_1:40031185-40031204 | None:intergenic | 45.0% | |
| TCAGCCGTGATCTACAATGA+CGG | + | chr4_1:40031211-40031230 | Msa0547200:CDS | 45.0% | |
| ! | CGGCAAAATTTGGGATGATC+AGG | + | chr4_1:40031231-40031250 | Msa0547200:CDS | 45.0% |
| GAACAGTGGATATTCTGGGT+TGG | + | chr4_1:40032051-40032070 | Msa0547200:intron | 45.0% | |
| !! | TTCTGGGTTGGTCCAATGAT+TGG | + | chr4_1:40032063-40032082 | Msa0547200:CDS | 45.0% |
| GGTTCAGCCATTAAAGCTCT+TGG | + | chr4_1:40032126-40032145 | Msa0547200:CDS | 45.0% | |
| AAAGACGAAAAGGCCAGGAT+AGG | - | chr4_1:40032268-40032287 | None:intergenic | 45.0% | |
| AAGGAAAAGACGAAAAGGCC+AGG | - | chr4_1:40032273-40032292 | None:intergenic | 45.0% | |
| ! | TTTTCAGCTGCAACTGCAGT+GGG | + | chr4_1:40032291-40032310 | Msa0547200:three_prime_UTR | 45.0% |
| ACACCCTTGAAACACAAGCA+TGG | - | chr4_1:40032366-40032385 | None:intergenic | 45.0% | |
| ! | CTATCAATGGTGCTGGAGGT+GGG | - | chr4_1:40029892-40029911 | None:intergenic | 50.0% |
| ! | TCTATCAATGGTGCTGGAGG+TGG | - | chr4_1:40029893-40029912 | None:intergenic | 50.0% |
| CACCAGTCTGATCCTAAAGC+TGG | + | chr4_1:40030019-40030038 | Msa0547200:CDS | 50.0% | |
| !! | CACCAGCTTTAGGATCAGAC+TGG | - | chr4_1:40030024-40030043 | None:intergenic | 50.0% |
| CAGTCTGATCCTAAAGCTGG+TGG | + | chr4_1:40030022-40030041 | Msa0547200:CDS | 50.0% | |
| CAGTCAGTACCACCAGCTTT+AGG | - | chr4_1:40030034-40030053 | None:intergenic | 50.0% | |
| !! | GGTACTGACTGTGATGGTGT+TGG | + | chr4_1:40030043-40030062 | Msa0547200:CDS | 50.0% |
| ! | GGTATTGCTTGGGCTTTTGG+TGG | + | chr4_1:40030073-40030092 | Msa0547200:CDS | 50.0% |
| ! | ATCCTTGTTTACTGCACCGC+CGG | + | chr4_1:40030106-40030125 | Msa0547200:CDS | 50.0% |
| TAGCATACCAGAGATACCGG+CGG | - | chr4_1:40030125-40030144 | None:intergenic | 50.0% | |
| ATCAACCCTGCCGTGACATT+CGG | + | chr4_1:40030721-40030740 | Msa0547200:CDS | 50.0% | |
| CACGAATAGCCCGAATGTCA+CGG | - | chr4_1:40030734-40030753 | None:intergenic | 50.0% | |
| GTGACATTCGGGCTATTCGT+GGG | + | chr4_1:40030733-40030752 | Msa0547200:CDS | 50.0% | |
| !! | GACGGAAGGTGTCCTTGATT+AGG | + | chr4_1:40030755-40030774 | Msa0547200:CDS | 50.0% |
| CTGACCCTAAGAGAAACGCT+AGG | + | chr4_1:40030971-40030990 | Msa0547200:CDS | 50.0% | |
| GAGTCCCTAGCGTTTCTCTT+AGG | - | chr4_1:40030979-40030998 | None:intergenic | 50.0% | |
| !! | GTTTTGGCACCACTTCCCAT+TGG | + | chr4_1:40031112-40031131 | Msa0547200:CDS | 50.0% |
| !! | TAATACCGGTGCCGGTAATG+GGG | - | chr4_1:40031171-40031190 | None:intergenic | 50.0% |
| !! | GTTAATACCGGTGCCGGTAA+TGG | - | chr4_1:40031173-40031192 | None:intergenic | 50.0% |
| CTGATCCGAAACTTCTTGCC+GGG | - | chr4_1:40031195-40031214 | None:intergenic | 50.0% | |
| GCTGATCCGAAACTTCTTGC+CGG | - | chr4_1:40031196-40031215 | None:intergenic | 50.0% | |
| TCCAATGATTGGAGCTGCTG+TGG | + | chr4_1:40032074-40032093 | Msa0547200:CDS | 50.0% | |
| CACTGCAGTTGCAGCTGAAA+AGG | - | chr4_1:40032292-40032311 | None:intergenic | 50.0% | |
| ! | CTTTTCAGCTGCAACTGCAG+TGG | + | chr4_1:40032290-40032309 | Msa0547200:three_prime_UTR | 50.0% |
| TTTCAGCTGCAACTGCAGTG+GGG | + | chr4_1:40032292-40032311 | Msa0547200:three_prime_UTR | 50.0% | |
| !! | GCTGGTGGTACTGACTGTGA+TGG | + | chr4_1:40030037-40030056 | Msa0547200:CDS | 55.0% |
| TACCGGCGGTGCAGTAAACA+AGG | - | chr4_1:40030111-40030130 | None:intergenic | 55.0% | |
| TCAACCCTGCCGTGACATTC+GGG | + | chr4_1:40030722-40030741 | Msa0547200:CDS | 55.0% | |
| ATAGCCCGAATGTCACGGCA+GGG | - | chr4_1:40030729-40030748 | None:intergenic | 55.0% | |
| AATAGCCCGAATGTCACGGC+AGG | - | chr4_1:40030730-40030749 | None:intergenic | 55.0% | |
| CGTGACATTCGGGCTATTCG+TGG | + | chr4_1:40030732-40030751 | Msa0547200:CDS | 55.0% | |
| CATTCGGGCTATTCGTGGGA+CGG | + | chr4_1:40030737-40030756 | Msa0547200:CDS | 55.0% | |
| TACATGGCAGCACAGTGTGC+CGG | + | chr4_1:40030787-40030806 | Msa0547200:CDS | 55.0% | |
| ! | TGTGGTACCGGACTTGCCAA+AGG | + | chr4_1:40030817-40030836 | Msa0547200:CDS | 55.0% |
| ACTATCCCCATTACCGGCAC+CGG | + | chr4_1:40031163-40031182 | Msa0547200:CDS | 55.0% | |
| !! | TACCGGCACCGGTATTAACC+CGG | + | chr4_1:40031174-40031193 | Msa0547200:CDS | 55.0% |
| GCCACAGCAGCTCCAATCAT+TGG | - | chr4_1:40032078-40032097 | None:intergenic | 55.0% | |
| ATGATTGGAGCTGCTGTGGC+TGG | + | chr4_1:40032078-40032097 | Msa0547200:CDS | 55.0% | |
| ! | ATGGTGCTGGAGGTGGGTCT+TGG | - | chr4_1:40029886-40029905 | None:intergenic | 60.0% |
| TACTGCACCGCCGGTATCTC+TGG | + | chr4_1:40030115-40030134 | Msa0547200:CDS | 60.0% | |
| TCCGGTACCACAGATTGCGC+CGG | - | chr4_1:40030809-40030828 | None:intergenic | 60.0% | |
| TGCCGGGTTAATACCGGTGC+CGG | - | chr4_1:40031179-40031198 | None:intergenic | 60.0% | |
| GCTGCAACTGCAGTGGGGTT+TGG | + | chr4_1:40032297-40032316 | Msa0547200:three_prime_UTR | 60.0% | |
| GCAACTGCAGTGGGGTTTGG+AGG | + | chr4_1:40032300-40032319 | Msa0547200:three_prime_UTR | 60.0% | |
| CGGGCTATTCGTGGGACGGA+AGG | + | chr4_1:40030741-40030760 | Msa0547200:CDS | 65.0% | |
| ! | CAGTGTGCCGGCGCAATCTG+TGG | + | chr4_1:40030799-40030818 | Msa0547200:CDS | 65.0% |
| GCCGGCGCAATCTGTGGTAC+CGG | + | chr4_1:40030805-40030824 | Msa0547200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40029717 | 40032653 | 40029717 | ID=Msa0547200;Name=Msa0547200 |
| chr4_1 | mRNA | 40029717 | 40032653 | 40029717 | ID=Msa0547200-mRNA-1;Parent=Msa0547200;Name=Msa0547200-mRNA-1;_AED=0.03;_eAED=0.03;_QI=113|1|1|1|1|1|4|483|285 |
| chr4_1 | exon | 40029717 | 40030136 | 40029717 | ID=Msa0547200-mRNA-1:exon:10199;Parent=Msa0547200-mRNA-1 |
| chr4_1 | exon | 40030713 | 40031008 | 40030713 | ID=Msa0547200-mRNA-1:exon:10200;Parent=Msa0547200-mRNA-1 |
| chr4_1 | exon | 40031112 | 40031252 | 40031112 | ID=Msa0547200-mRNA-1:exon:10201;Parent=Msa0547200-mRNA-1 |
| chr4_1 | exon | 40032057 | 40032653 | 40032057 | ID=Msa0547200-mRNA-1:exon:10202;Parent=Msa0547200-mRNA-1 |
| chr4_1 | five_prime_UTR | 40029717 | 40029829 | 40029717 | ID=Msa0547200-mRNA-1:five_prime_utr;Parent=Msa0547200-mRNA-1 |
| chr4_1 | CDS | 40029830 | 40030136 | 40029830 | ID=Msa0547200-mRNA-1:cds;Parent=Msa0547200-mRNA-1 |
| chr4_1 | CDS | 40030713 | 40031008 | 40030713 | ID=Msa0547200-mRNA-1:cds;Parent=Msa0547200-mRNA-1 |
| chr4_1 | CDS | 40031112 | 40031252 | 40031112 | ID=Msa0547200-mRNA-1:cds;Parent=Msa0547200-mRNA-1 |
| chr4_1 | CDS | 40032057 | 40032170 | 40032057 | ID=Msa0547200-mRNA-1:cds;Parent=Msa0547200-mRNA-1 |
| chr4_1 | three_prime_UTR | 40032171 | 40032653 | 40032171 | ID=Msa0547200-mRNA-1:three_prime_utr;Parent=Msa0547200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
