AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999590 MtrunA17_Chr6g0485711 97.524 525 2 1 1 525 1 514 0.0 1045
Msa0999590 MtrunA17_Chr8g0355281 45.161 248 116 4 191 433 71 303 6.85e-62 206
Msa0999590 MtrunA17_Chr4g0044131 25.600 250 157 6 195 442 14 236 8.52e-15 74.7
Msa0999590 MtrunA17_Chr4g0028911 25.463 216 146 4 183 397 5 206 1.48e-14 73.9
Msa0999590 MtrunA17_Chr4g0028921 25.000 216 147 4 183 397 5 206 3.65e-14 72.8
Msa0999590 MtrunA17_Chr7g0267011 27.723 202 120 5 195 393 14 192 8.12e-14 70.5
Msa0999590 MtrunA17_Chr3g0123251 26.923 234 141 10 175 397 31 245 1.44e-13 72.0
Msa0999590 MtrunA17_Chr1g0171831 21.610 236 171 4 183 416 8 231 6.39e-12 66.2
Msa0999590 MtrunA17_Chr3g0112171 24.303 251 161 8 195 444 21 243 8.80e-12 65.9
Msa0999590 MtrunA17_Chr7g0239501 26.829 205 129 6 195 398 22 206 9.36e-12 65.5
Msa0999590 MtrunA17_Chr3g0123231 25.541 231 140 8 180 397 29 240 4.63e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999590 AT4G13250.1 73.118 465 111 3 62 525 45 496 0.0 688
Msa0999590 AT4G13250.2 72.688 465 111 4 62 525 45 494 0.0 679
Msa0999590 AT5G04900.1 42.308 286 137 6 191 464 79 348 5.34e-64 212
Msa0999590 AT1G24360.1 27.273 209 123 6 194 397 79 263 5.44e-14 73.6
Msa0999590 AT1G10310.1 30.144 209 125 4 192 400 18 205 1.11e-13 71.2
Msa0999590 AT5G65205.1 29.665 209 121 6 194 401 11 194 3.36e-13 70.5
Msa0999590 AT3G46170.1 22.672 247 171 4 183 426 20 249 3.67e-13 70.5
Msa0999590 AT3G55310.1 23.171 246 171 4 183 426 11 240 8.13e-13 69.3
Msa0999590 AT3G55290.2 22.672 247 173 4 182 426 10 240 1.61e-12 68.6
Msa0999590 AT3G55290.1 22.672 247 173 4 182 426 11 241 1.76e-12 68.6
Msa0999590 AT1G63380.2 23.853 218 148 5 183 397 16 218 2.93e-12 67.8
Msa0999590 AT1G63380.3 23.853 218 148 5 183 397 9 211 3.09e-12 67.8
Msa0999590 AT4G13180.1 27.273 231 142 8 192 416 16 226 3.53e-12 67.4
Msa0999590 AT1G63380.4 23.853 218 148 5 183 397 13 215 3.67e-12 67.4
Msa0999590 AT1G63380.1 23.853 218 148 5 183 397 11 213 3.73e-12 67.4
Msa0999590 AT5G06060.1 25.581 258 155 8 192 444 12 237 1.62e-11 65.5
Msa0999590 AT1G62610.2 22.936 218 150 4 183 397 7 209 7.55e-11 63.5
Msa0999590 AT1G62610.1 22.936 218 150 4 183 397 8 210 8.36e-11 63.5
Msa0999590 AT1G62610.3 22.936 218 150 4 183 397 9 211 8.68e-11 63.2

Find 140 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTTATTGTTGTGATTT+TGG 0.167686 6_4:+81806351 None:intergenic
TCATCTGGGTTGTTTGGTTT+TGG 0.180964 6_4:-81806138 Msa0999590:CDS
AATGTTCTAGCAACAGTTTC+AGG 0.185260 6_4:+81802560 None:intergenic
GTGAAAGTTCAAAGGGAAAA+TGG 0.188677 6_4:-81806012 Msa0999590:CDS
GCACGGGAGTTTCTTCTTTC+GGG 0.194024 6_4:-81804627 Msa0999590:CDS
TATTAAACATTTGCTTGTTT+TGG 0.224880 6_4:+81802597 None:intergenic
AACAAGATTGCTGTTCAAAT+TGG 0.227837 6_4:-81805195 Msa0999590:intron
GGCACGGGAGTTTCTTCTTT+CGG 0.243543 6_4:-81804628 Msa0999590:CDS
AATTCTTCATCTGGGTTGTT+TGG 0.266209 6_4:-81806144 Msa0999590:CDS
TTCAAAGGGAAAATGGGTTT+TGG 0.285947 6_4:-81806005 Msa0999590:CDS
AACTTGGTTATATTGACATT+TGG 0.298895 6_4:-81804303 Msa0999590:CDS
GTAGATTGTCTCGACAAATT+TGG 0.300093 6_4:-81803592 Msa0999590:intron
ATATGTATTAGTTCTTTGTT+AGG 0.306235 6_4:-81805798 Msa0999590:intron
AACAATGCTGGAACAAATAA+AGG 0.317086 6_4:-81803866 Msa0999590:CDS
GGTAGCTCAAATTCTTCATC+TGG 0.318654 6_4:-81806153 Msa0999590:CDS
GCCAGGCCACATATTTAATA+TGG 0.321841 6_4:-81803514 Msa0999590:CDS
AGTATAGACAAGCTGTTGTT+AGG 0.324288 6_4:-81805924 Msa0999590:CDS
CTTTCTCAAGCAAAAGTTGT+AGG 0.333902 6_4:-81804388 Msa0999590:CDS
GGTTGATGAGGTTCTATCTA+AGG 0.338928 6_4:-81805902 Msa0999590:intron
AACTTTGCTGTTAGCGAACT+TGG 0.343712 6_4:-81804319 Msa0999590:CDS
AAGCAGACCGACTAAGAAAC+TGG 0.348050 6_4:-81801681 Msa0999590:CDS
ACTTGGTTATATTGACATTT+GGG 0.349608 6_4:-81804302 Msa0999590:intron
AATAAACATAAGCTTAGAAA+TGG 0.354527 6_4:-81806180 Msa0999590:CDS
CATAAGCTTAGAAATGGATT+TGG 0.356297 6_4:-81806174 Msa0999590:CDS
TCATAATACGCATGGCTTCT+CGG 0.361034 6_4:+81803550 None:intergenic
AATATGGACGGTGCAGGTTC+CGG 0.376327 6_4:-81803498 Msa0999590:CDS
GTGATCCATGAAATTGTCTA+AGG 0.376708 6_4:+81802913 None:intergenic
TCCTAGAATCTTGCTTGCCT+TGG 0.382251 6_4:-81802480 Msa0999590:CDS
TGAAAGTTCAAAGGGAAAAT+GGG 0.384855 6_4:-81806011 Msa0999590:CDS
TGTGAAAATATCTGATTCAT+TGG 0.386607 6_4:+81806411 None:intergenic
TTCAATAAATTGCATGCATC+AGG 0.387174 6_4:+81801514 None:intergenic
CTTGTGTAAGCTTCATGTAT+AGG 0.395810 6_4:-81801331 Msa0999590:three_prime_UTR
TGCGGCCTTAGACAATTTCA+TGG 0.401293 6_4:-81802918 Msa0999590:CDS
GCATCAGGATATTATGTTCC+AGG 0.402455 6_4:+81801529 None:intergenic
CATAATACGCATGGCTTCTC+GGG 0.402644 6_4:+81803551 None:intergenic
GTCAGATGGATGCACTGATA+TGG 0.403741 6_4:-81804950 Msa0999590:CDS
GTGTGCAGTACAAGGGGATT+GGG 0.408179 6_4:-81804660 Msa0999590:intron
TGGCTTGGAGGAGTTATCAT+TGG 0.408578 6_4:-81804921 Msa0999590:CDS
GGACAATGATAGGTGCTAAC+TGG 0.410970 6_4:-81804899 Msa0999590:CDS
TTGAATTAATGTAACATGTT+TGG 0.412019 6_4:+81806328 None:intergenic
GTTTCTTAGTCGGTCTGCTT+CGG 0.422160 6_4:+81801684 None:intergenic
TGCTTGCCTTGGTCACTGCT+TGG 0.422221 6_4:-81802469 Msa0999590:CDS
ACCAAGGCAAGCAAGATTCT+AGG 0.424125 6_4:+81802479 None:intergenic
GCAATTGGATTTCAGATGTC+AGG 0.424710 6_4:-81805132 Msa0999590:intron
ATATGTGGCCTGGCTTGGTT+TGG 0.425470 6_4:+81803523 None:intergenic
CCTTGGTCACTGCTTGGTTA+CGG 0.429312 6_4:-81802463 Msa0999590:CDS
CTTGGTTACGGCGAGGTCGC+TGG 0.429812 6_4:-81802451 Msa0999590:CDS
ATTAAATATGTGGCCTGGCT+TGG 0.433257 6_4:+81803518 None:intergenic
TTAGTTTGTATAATCATTTG+TGG 0.436264 6_4:-81801361 Msa0999590:three_prime_UTR
ATAACTATAAGCATCACAAT+GGG 0.437700 6_4:+81801277 None:intergenic
GGCTTGGAGGAGTTATCATT+GGG 0.441757 6_4:-81804920 Msa0999590:CDS
TGTGTGCAGTACAAGGGGAT+TGG 0.447496 6_4:-81804661 Msa0999590:intron
GTTATCATTGGGACAATGAT+AGG 0.449531 6_4:-81804909 Msa0999590:CDS
ATGCGAGTCGTTAAAGGAAC+TGG 0.451935 6_4:-81802527 Msa0999590:CDS
AAGTGAAGTGAAAGTTCAAA+GGG 0.463479 6_4:-81806019 Msa0999590:CDS
ACAGTTGCTTGCACAGACTC+AGG 0.464504 6_4:+81804475 None:intergenic
CCGCGTAATGTTGTCATCAC+TGG 0.466982 6_4:-81804849 Msa0999590:CDS
GGTTGATGAGGTTCTATGTA+TGG 0.472055 6_4:-81805776 Msa0999590:intron
GGCTAATGATGTTCAGAGAT+TGG 0.478323 6_4:-81804344 Msa0999590:CDS
ATATGGTATAGTTGGCTTGG+AGG 0.479095 6_4:-81804933 Msa0999590:CDS
GTATAGACAAGCTGTTGTTA+GGG 0.482674 6_4:-81805923 Msa0999590:CDS
ACTGTTTGAAGAAGTTTATG+TGG 0.483453 6_4:+81801402 None:intergenic
AGGAGGAGTCAAGTAATTGA+TGG 0.484820 6_4:+81802499 None:intergenic
TATGTATTAGTTCTTTGTTA+GGG 0.487580 6_4:-81805797 Msa0999590:intron
GTAGCTCAAATTCTTCATCT+GGG 0.489626 6_4:-81806152 Msa0999590:CDS
AGCACTAGCAGCAATTTGCC+TGG 0.492616 6_4:-81801547 Msa0999590:CDS
AAAGTGAAGTGAAAGTTCAA+AGG 0.495590 6_4:-81806020 Msa0999590:CDS
ACTGGTGTGATCCTTGCAAT+TGG 0.496045 6_4:-81805147 Msa0999590:CDS
ATGAGAAACCAAACCAAGCC+AGG 0.506303 6_4:-81803531 Msa0999590:CDS
CAGTGATGAAGACATCAAAC+AGG 0.507912 6_4:-81803822 Msa0999590:intron
CTGATATGGTATAGTTGGCT+TGG 0.508323 6_4:-81804936 Msa0999590:CDS
ATATTTAATATGGACGGTGC+AGG 0.513940 6_4:-81803504 Msa0999590:CDS
ATGCATGCAATTTATTGAAG+AGG 0.515674 6_4:-81801510 Msa0999590:three_prime_UTR
GAGTGCAAGCGATCGAAAGT+AGG 0.517173 6_4:-81802882 Msa0999590:CDS
CACCGTCCATATTAAATATG+TGG 0.518027 6_4:+81803508 None:intergenic
CCATGCCTGGAGATGCTGTA+TGG 0.520734 6_4:+81802856 None:intergenic
GTTCTTTGTTAGGGTTGATG+AGG 0.522150 6_4:-81805788 Msa0999590:CDS
GAAGGCATTGCCAATGCAGT+TGG 0.529622 6_4:-81804427 Msa0999590:CDS
AGTTCTGTGAGAACCATGCC+TGG 0.533618 6_4:+81802843 None:intergenic
CAGAGGTGTGCTAGACCCTC+CGG 0.534337 6_4:+81803479 None:intergenic
CAAAGATGAACCAACTGCAT+TGG 0.539792 6_4:+81804417 None:intergenic
CAGTTGCTTGCACAGACTCA+GGG 0.540725 6_4:+81804476 None:intergenic
AGCTGTTGTTAGGGTTGATG+AGG 0.541360 6_4:-81805914 Msa0999590:CDS
ATGCACTGATATGGTATAGT+TGG 0.541778 6_4:-81804941 Msa0999590:CDS
TGTTTATTCAAATTACACTC+TGG 0.542244 6_4:+81806195 None:intergenic
AAGGGGATTGGGCAAAGCAT+TGG 0.542264 6_4:-81804649 Msa0999590:CDS
ACTCAACAGATAAACAATGC+TGG 0.542977 6_4:-81803878 Msa0999590:intron
TCCATATTAAATATGTGGCC+TGG 0.544104 6_4:+81803513 None:intergenic
ATTGGGCAAAGCATTGGCAC+GGG 0.546103 6_4:-81804643 Msa0999590:CDS
AGAAGTTTATGTGGACATGT+TGG 0.547713 6_4:+81801411 None:intergenic
GATTGGGCAAAGCATTGGCA+CGG 0.551942 6_4:-81804644 Msa0999590:CDS
AGAGCTTGAGGAAAATCTAA+AGG 0.554658 6_4:-81804449 Msa0999590:CDS
TGAAGATGGTGGTGATGTGA+AGG 0.555025 6_4:-81806067 Msa0999590:CDS
ATGGGGAATGCTTGATTACA+TGG 0.555085 6_4:+81801295 None:intergenic
TTGGTTTCTCATAATACGCA+TGG 0.557467 6_4:+81803542 None:intergenic
TTTCGGCCCAGTTTCTTAGT+CGG 0.558075 6_4:+81801674 None:intergenic
ATTTCATGGATCACTATTGA+CGG 0.560581 6_4:-81802904 Msa0999590:CDS
GGTGTCCATACAGCATCTCC+AGG 0.560814 6_4:-81802861 Msa0999590:CDS
CATCTCCATTGCATCGGTGA+AGG 0.561014 6_4:+81801636 None:intergenic
AGGGCTTTCAAGAGTGAAGA+TGG 0.562950 6_4:-81806081 Msa0999590:CDS
TCATCACTGAATTGAAGCAA+TGG 0.569274 6_4:+81803836 None:intergenic
ACCTAAACCATAAAACAAAG+TGG 0.570690 6_4:-81801444 Msa0999590:three_prime_UTR
CCTTTAACGACTCGCATCCG+TGG 0.571537 6_4:+81802533 None:intergenic
AGCTATGGTTCTACAAAATG+CGG 0.573512 6_4:-81802936 Msa0999590:CDS
ATGGACGGTGCAGGTTCCGG+AGG 0.575972 6_4:-81803495 Msa0999590:CDS
AGGTCGCTGGTTTGACGATG+AGG 0.583486 6_4:-81802438 Msa0999590:intron
TTGGAAGATTATTGTCGCGA+AGG 0.583547 6_4:-81804873 Msa0999590:CDS
GACAATGATAGGTGCTAACT+GGG 0.586174 6_4:-81804898 Msa0999590:CDS
TATAACTATAAGCATCACAA+TGG 0.586854 6_4:+81801276 None:intergenic
CTTGAGGAAAATCTAAAGGA+AGG 0.588050 6_4:-81804445 Msa0999590:CDS
GATAGGTGCTAACTGGGTGT+TGG 0.588306 6_4:-81804892 Msa0999590:CDS
TGAATGCAAAGAAATAAACT+TGG 0.590166 6_4:+81801186 None:intergenic
ACATCTGAAATCCAATTGCA+AGG 0.591234 6_4:+81805136 None:intergenic
TGTGTACATCTCCATTGCAT+CGG 0.598757 6_4:+81801630 None:intergenic
TTGCTAGAACATTAGTTCCA+CGG 0.600648 6_4:-81802550 Msa0999590:CDS
AGCAACTGTCAAAGAGCTTG+AGG 0.600648 6_4:-81804461 Msa0999590:CDS
TGAAGGTGGAGATAGTCAGA+TGG 0.600721 6_4:-81804964 Msa0999590:intron
GGCCACATATTTAATATGGA+CGG 0.602083 6_4:-81803510 Msa0999590:CDS
ACTGGGCCGAAAACCGCGCA+CGG 0.603743 6_4:-81801663 Msa0999590:CDS
CCATACAGCATCTCCAGGCA+TGG 0.604098 6_4:-81802856 Msa0999590:CDS
GCATGGCTTCTCGGGTACAA+AGG 0.608231 6_4:+81803559 None:intergenic
ATTGTCTCGACAAATTTGGT+CGG 0.608484 6_4:-81803588 Msa0999590:CDS
AATTGCTTGTGATGTTTGTG+AGG 0.612610 6_4:-81804365 Msa0999590:CDS
GATCACACCAGTGCTCATCA+TGG 0.616573 6_4:+81805158 None:intergenic
ATTGTGACCATGATGAGCAC+TGG 0.627363 6_4:-81805165 Msa0999590:CDS
AATACTCACACGGCTGTCAG+AGG 0.628482 6_4:+81803462 None:intergenic
CGGTGAAGGAAAACCGTGCG+CGG 0.632870 6_4:+81801650 None:intergenic
CTTGATTACATGGTGTCACG+TGG 0.644293 6_4:+81801305 None:intergenic
AGCAGACCGACTAAGAAACT+GGG 0.645563 6_4:-81801680 Msa0999590:CDS
GTCACTGCTTGGTTACGGCG+AGG 0.648939 6_4:-81802458 Msa0999590:CDS
AGTCGTTAAAGGAACTGGCA+AGG 0.653271 6_4:-81802522 Msa0999590:CDS
TGGACGGTGCAGGTTCCGGA+GGG 0.657750 6_4:-81803494 Msa0999590:CDS
CCGTAACCAAGCAGTGACCA+AGG 0.660846 6_4:+81802463 None:intergenic
AGATGTACACAGAGAACACA+TGG 0.664446 6_4:-81801618 Msa0999590:CDS
CCAGTGATGACAACATTACG+CGG 0.669478 6_4:+81804849 None:intergenic
GTGTAATTGTTACTTCACGA+AGG 0.670168 6_4:-81804599 Msa0999590:intron
AAGGCAAGCAAGATTCTAGG+AGG 0.670870 6_4:+81802482 None:intergenic
GTAATGTTGTCATCACTGGA+AGG 0.686769 6_4:-81804845 Msa0999590:intron
GCTTTCAAGAGTGAAGATGG+TGG 0.735744 6_4:-81806078 Msa0999590:CDS
TAACTATAAGCATCACAATG+GGG 0.735871 6_4:+81801278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAATAAAATTACG+CGG + chr6_4:81803794-81803813 None:intergenic 10.0%
!!! AAATTTATGATAATGAAAAT+TGG - chr6_4:81804470-81804489 Msa0999590:CDS 10.0%
!!! TTTATTTATTGTTGTGATTT+TGG + chr6_4:81801231-81801250 None:intergenic 15.0%
!!! TTTTATCTTAATCTTAAACA+TGG - chr6_4:81801332-81801351 Msa0999590:three_prime_UTR 15.0%
!!! TAATTTTAGAAATGTTTTGT+TGG - chr6_4:81801599-81801618 Msa0999590:CDS 15.0%
!!! AATTTTAGAAATGTTTTGTT+GGG - chr6_4:81801600-81801619 Msa0999590:CDS 15.0%
!!! TTATCATTTTTTAATCTGTT+TGG - chr6_4:81801721-81801740 Msa0999590:intron 15.0%
!! GTTTAAAAAAAAATGAATGT+TGG - chr6_4:81802816-81802835 Msa0999590:intron 15.0%
!!! TGAGTTTTTTTTTTTTTTTG+AGG + chr6_4:81803847-81803866 None:intergenic 15.0%
!!! AAAAAAAACTTTTCAAGTTA+AGG + chr6_4:81803953-81803972 None:intergenic 15.0%
!! AGAAACAAGAAAAAAAAATT+TGG + chr6_4:81804351-81804370 None:intergenic 15.0%
!! ATGAAACAAAAAAATATTGA+TGG + chr6_4:81805365-81805384 None:intergenic 15.0%
!!! ATTTTGTTTTTGATGATTTA+AGG + chr6_4:81806108-81806127 None:intergenic 15.0%
!! TTGAATTAATGTAACATGTT+TGG + chr6_4:81801254-81801273 None:intergenic 20.0%
!! AATAAACATAAGCTTAGAAA+TGG - chr6_4:81801399-81801418 Msa0999590:three_prime_UTR 20.0%
!!! ATTTTAGAAATGTTTTGTTG+GGG - chr6_4:81801601-81801620 Msa0999590:CDS 20.0%
!!! ATATGTATTAGTTCTTTGTT+AGG - chr6_4:81801781-81801800 Msa0999590:intron 20.0%
!!! TATGTATTAGTTCTTTGTTA+GGG - chr6_4:81801782-81801801 Msa0999590:intron 20.0%
!!! TCATATACACATTCTAAAAT+AGG + chr6_4:81802494-81802513 None:intergenic 20.0%
!! ATATATATACTAACCATTGT+CGG + chr6_4:81802543-81802562 None:intergenic 20.0%
!!! ATATGTGATGTTGATTTTTT+TGG - chr6_4:81802584-81802603 Msa0999590:CDS 20.0%
!!! TTTTTTTGGAAATTTTGTGA+AGG - chr6_4:81802598-81802617 Msa0999590:CDS 20.0%
!!! CAAACATTTTTTGCTTTATT+TGG - chr6_4:81802787-81802806 Msa0999590:intron 20.0%
!! TAATCAAAGTAGACTTTAAT+CGG + chr6_4:81802851-81802870 None:intergenic 20.0%
!!! CTTCAATGAAAGTTTTATAT+TGG - chr6_4:81803600-81803619 Msa0999590:intron 20.0%
!! ACAATACGAAAAATTAGATT+AGG + chr6_4:81803666-81803685 None:intergenic 20.0%
!!! TATTAAACATTTGCTTGTTT+TGG + chr6_4:81804985-81805004 None:intergenic 20.0%
!!! CATCTTTAGAAATAGTAATT+AGG - chr6_4:81805260-81805279 Msa0999590:intron 20.0%
!!! AAATAATCCACTTTGTTTTA+TGG + chr6_4:81806145-81806164 None:intergenic 20.0%
!!! TTAGTTTGTATAATCATTTG+TGG - chr6_4:81806218-81806237 Msa0999590:CDS 20.0%
! TGTGAAAATATCTGATTCAT+TGG + chr6_4:81801171-81801190 None:intergenic 25.0%
! TGTTTATTCAAATTACACTC+TGG + chr6_4:81801387-81801406 None:intergenic 25.0%
!!! TTTGGTTTTGGACAAAATTT+TGG - chr6_4:81801453-81801472 Msa0999590:three_prime_UTR 25.0%
! CTATCATTCTTGATTATGTT+TGG - chr6_4:81801847-81801866 Msa0999590:intron 25.0%
!! TTTTAGCATATAAGTGCTTA+TGG - chr6_4:81801891-81801910 Msa0999590:intron 25.0%
!!! CTTGTTTTCATATGTTATCT+TGG - chr6_4:81801961-81801980 Msa0999590:intron 25.0%
! ATTGAAAAACGAAAGAAACA+AGG + chr6_4:81802315-81802334 None:intergenic 25.0%
! AACTTGGTTATATTGACATT+TGG - chr6_4:81803276-81803295 Msa0999590:intron 25.0%
! ACTTGGTTATATTGACATTT+GGG - chr6_4:81803277-81803296 Msa0999590:intron 25.0%
! AAGGAAATTGTTATGCTAAT+AGG - chr6_4:81803555-81803574 Msa0999590:CDS 25.0%
! GTGATAAGAAAATGATAGTA+GGG + chr6_4:81803581-81803600 None:intergenic 25.0%
! AGTGATAAGAAAATGATAGT+AGG + chr6_4:81803582-81803601 None:intergenic 25.0%
!!! TGTTGTAAAAGTTGTTTTCA+TGG - chr6_4:81803905-81803924 Msa0999590:intron 25.0%
! AATAGTAGTTTCTTATCGAA+TGG - chr6_4:81804148-81804167 Msa0999590:intron 25.0%
! ATAGTAGTTTCTTATCGAAT+GGG - chr6_4:81804149-81804168 Msa0999590:intron 25.0%
! TAGCTAAACAACAAATGAAA+AGG + chr6_4:81804628-81804647 None:intergenic 25.0%
!!! TTTCATTTGTTGTTTAGCTA+TGG - chr6_4:81804628-81804647 Msa0999590:CDS 25.0%
!!! ACGTTTATTGTTTTTTCATG+TGG - chr6_4:81804787-81804806 Msa0999590:intron 25.0%
! CTTTACAGAATCTTCTTATT+AGG - chr6_4:81804814-81804833 Msa0999590:intron 25.0%
! AGTTAAAGGACTAAAATGAA+AGG + chr6_4:81805321-81805340 None:intergenic 25.0%
! GTCTTAAGTTTGTAAGTTAA+AGG + chr6_4:81805335-81805354 None:intergenic 25.0%
! GTTATTTATAGGTTTCACTA+CGG + chr6_4:81805573-81805592 None:intergenic 25.0%
! TGAAACCTATAAATAACTGA+AGG - chr6_4:81805576-81805595 Msa0999590:intron 25.0%
! GAAACCTATAAATAACTGAA+GGG - chr6_4:81805577-81805596 Msa0999590:intron 25.0%
! AATGTGTTATGCATATTTCA+GGG - chr6_4:81805855-81805874 Msa0999590:intron 25.0%
! ATAACTATAAGCATCACAAT+GGG + chr6_4:81806305-81806324 None:intergenic 25.0%
! TATAACTATAAGCATCACAA+TGG + chr6_4:81806306-81806325 None:intergenic 25.0%
! TGAATGCAAAGAAATAAACT+TGG + chr6_4:81806396-81806415 None:intergenic 25.0%
! CATAAGCTTAGAAATGGATT+TGG - chr6_4:81801405-81801424 Msa0999590:three_prime_UTR 30.0%
!! GTTTTGGACAAAATTTTGGT+GGG - chr6_4:81801457-81801476 Msa0999590:three_prime_UTR 30.0%
! GTTGTGTTTGAAAAAGTGTA+GGG - chr6_4:81801479-81801498 Msa0999590:three_prime_UTR 30.0%
AAAGTGAAGTGAAAGTTCAA+AGG - chr6_4:81801559-81801578 Msa0999590:CDS 30.0%
AAGTGAAGTGAAAGTTCAAA+GGG - chr6_4:81801560-81801579 Msa0999590:CDS 30.0%
TGAAAGTTCAAAGGGAAAAT+GGG - chr6_4:81801568-81801587 Msa0999590:CDS 30.0%
! TTTGTTGGGGAATTTTATGA+TGG - chr6_4:81801614-81801633 Msa0999590:CDS 30.0%
! TTGTTGGGGAATTTTATGAT+GGG - chr6_4:81801615-81801634 Msa0999590:CDS 30.0%
!!! TTTTATGATGGGTTCTAAGT+TGG - chr6_4:81801626-81801645 Msa0999590:CDS 30.0%
GGATTAACAACTTAATTGAG+TGG - chr6_4:81801868-81801887 Msa0999590:intron 30.0%
ATATGTTATCTTGGAGAGTT+TGG - chr6_4:81801970-81801989 Msa0999590:intron 30.0%
!! TTTCGTTTTTCAATCTTCTG+TGG - chr6_4:81802321-81802340 Msa0999590:intron 30.0%
! AACAAGATTGCTGTTCAAAT+TGG - chr6_4:81802384-81802403 Msa0999590:intron 30.0%
!! TTTTGGAAATTTTGTGAAGG+TGG - chr6_4:81802601-81802620 Msa0999590:CDS 30.0%
! TAAATTTTGTGTGCAGTACA+AGG - chr6_4:81802911-81802930 Msa0999590:CDS 30.0%
! AAATTTTGTGTGCAGTACAA+GGG - chr6_4:81802912-81802931 Msa0999590:CDS 30.0%
AACAATGCTGGAACAAATAA+AGG - chr6_4:81803713-81803732 Msa0999590:intron 30.0%
ACTGTAAACAACATGATTGA+AGG + chr6_4:81804437-81804456 None:intergenic 30.0%
ATTTCATGGATCACTATTGA+CGG - chr6_4:81804675-81804694 Msa0999590:intron 30.0%
! TTCTCACAGAACTTCTTTTA+AGG - chr6_4:81804746-81804765 Msa0999590:intron 30.0%
! TTGATGACAGAAAAAGAAGT+TGG + chr6_4:81804845-81804864 None:intergenic 30.0%
CTTAATAACTGTTAGAAGTG+TGG - chr6_4:81804932-81804951 Msa0999590:CDS 30.0%
TGAGGTATGTAATGATGATT+TGG - chr6_4:81805159-81805178 Msa0999590:CDS 30.0%
AAGGAAAATACTTAAGCAAG+CGG + chr6_4:81805302-81805321 None:intergenic 30.0%
! TTCGTCAAATATTTTCTACG+TGG - chr6_4:81805445-81805464 Msa0999590:intron 30.0%
TGAACCCTTCAGTTATTTAT+AGG + chr6_4:81805584-81805603 None:intergenic 30.0%
AAATAACTGAAGGGTTCAAA+AGG - chr6_4:81805586-81805605 Msa0999590:intron 30.0%
AATAACTGAAGGGTTCAAAA+GGG - chr6_4:81805587-81805606 Msa0999590:intron 30.0%
! ACTGATTCAAAGGTAATTAC+TGG + chr6_4:81805621-81805640 None:intergenic 30.0%
TTACCTTTGAATCAGTAACA+CGG - chr6_4:81805625-81805644 Msa0999590:intron 30.0%
GGACAATTCATATTGTATGT+AGG + chr6_4:81805777-81805796 None:intergenic 30.0%
CAATGTGTTATGCATATTTC+AGG - chr6_4:81805854-81805873 Msa0999590:intron 30.0%
TTCAATAAATTGCATGCATC+AGG + chr6_4:81806068-81806087 None:intergenic 30.0%
ATGCATGCAATTTATTGAAG+AGG - chr6_4:81806069-81806088 Msa0999590:CDS 30.0%
ACCTAAACCATAAAACAAAG+TGG - chr6_4:81806135-81806154 Msa0999590:CDS 30.0%
!!! TCCACTTTGTTTTATGGTTT+AGG + chr6_4:81806139-81806158 None:intergenic 30.0%
ACTGTTTGAAGAAGTTTATG+TGG + chr6_4:81806180-81806199 None:intergenic 30.0%
TAACTATAAGCATCACAATG+GGG + chr6_4:81806304-81806323 None:intergenic 30.0%
GTAGCTCAAATTCTTCATCT+GGG - chr6_4:81801427-81801446 Msa0999590:three_prime_UTR 35.0%
AATTCTTCATCTGGGTTGTT+TGG - chr6_4:81801435-81801454 Msa0999590:three_prime_UTR 35.0%
!!! GGTTTTGGACAAAATTTTGG+TGG - chr6_4:81801456-81801475 Msa0999590:three_prime_UTR 35.0%
! GGTTGTGTTTGAAAAAGTGT+AGG - chr6_4:81801478-81801497 Msa0999590:three_prime_UTR 35.0%
GTGAAAGTTCAAAGGGAAAA+TGG - chr6_4:81801567-81801586 Msa0999590:CDS 35.0%
!! TTCAAAGGGAAAATGGGTTT+TGG - chr6_4:81801574-81801593 Msa0999590:CDS 35.0%
AGTATAGACAAGCTGTTGTT+AGG - chr6_4:81801655-81801674 Msa0999590:CDS 35.0%
GTATAGACAAGCTGTTGTTA+GGG - chr6_4:81801656-81801675 Msa0999590:CDS 35.0%
TAAGTACTTGTGAGACTGTT+TGG + chr6_4:81802165-81802184 None:intergenic 35.0%
GGAAATAACACAACACTACT+TGG + chr6_4:81802294-81802313 None:intergenic 35.0%
! ACATCTGAAATCCAATTGCA+AGG + chr6_4:81802446-81802465 None:intergenic 35.0%
TCAACATCACATATGATACG+AGG + chr6_4:81802578-81802597 None:intergenic 35.0%
! ATGCACTGATATGGTATAGT+TGG - chr6_4:81802638-81802657 Msa0999590:intron 35.0%
GTTATCATTGGGACAATGAT+AGG - chr6_4:81802670-81802689 Msa0999590:intron 35.0%
! AATTTTGTGTGCAGTACAAG+GGG - chr6_4:81802913-81802932 Msa0999590:CDS 35.0%
! GTGTAATTGTTACTTCACGA+AGG - chr6_4:81802980-81802999 Msa0999590:intron 35.0%
! TAATTGTTACTTCACGAAGG+TGG - chr6_4:81802983-81803002 Msa0999590:intron 35.0%
AGAGCTTGAGGAAAATCTAA+AGG - chr6_4:81803130-81803149 Msa0999590:intron 35.0%
CTTGAGGAAAATCTAAAGGA+AGG - chr6_4:81803134-81803153 Msa0999590:intron 35.0%
CTTTCTCAAGCAAAAGTTGT+AGG - chr6_4:81803191-81803210 Msa0999590:intron 35.0%
AATTGCTTGTGATGTTTGTG+AGG - chr6_4:81803214-81803233 Msa0999590:intron 35.0%
TATTGACATTTGGGTAAGTG+TGG - chr6_4:81803286-81803305 Msa0999590:intron 35.0%
GTCAGTATTAGTATCTTGCT+CGG - chr6_4:81803473-81803492 Msa0999590:CDS 35.0%
!!! AGCATCATTGAGCTAGTTTT+TGG - chr6_4:81803520-81803539 Msa0999590:CDS 35.0%
!! TTTTTGGCACACTAGCATAA+AGG - chr6_4:81803536-81803555 Msa0999590:CDS 35.0%
ACTCAACAGATAAACAATGC+TGG - chr6_4:81803701-81803720 Msa0999590:intron 35.0%
TCATCACTGAATTGAAGCAA+TGG + chr6_4:81803746-81803765 None:intergenic 35.0%
GTAGATTGTCTCGACAAATT+TGG - chr6_4:81803987-81804006 Msa0999590:intron 35.0%
ATTGTCTCGACAAATTTGGT+CGG - chr6_4:81803991-81804010 Msa0999590:intron 35.0%
TTGGTTTCTCATAATACGCA+TGG + chr6_4:81804040-81804059 None:intergenic 35.0%
TCCATATTAAATATGTGGCC+TGG + chr6_4:81804069-81804088 None:intergenic 35.0%
GGCCACATATTTAATATGGA+CGG - chr6_4:81804069-81804088 Msa0999590:intron 35.0%
CACCGTCCATATTAAATATG+TGG + chr6_4:81804074-81804093 None:intergenic 35.0%
ATATTTAATATGGACGGTGC+AGG - chr6_4:81804075-81804094 Msa0999590:intron 35.0%
TTGTCAAGAGAATACTCACA+CGG + chr6_4:81804130-81804149 None:intergenic 35.0%
TAAAGTCAAATAAAGCTCGG+TGG + chr6_4:81804190-81804209 None:intergenic 35.0%
!! ACCGAGCTTTATTTGACTTT+AGG - chr6_4:81804189-81804208 Msa0999590:intron 35.0%
CCCTAAAGTCAAATAAAGCT+CGG + chr6_4:81804193-81804212 None:intergenic 35.0%
!! CCGAGCTTTATTTGACTTTA+GGG - chr6_4:81804190-81804209 Msa0999590:intron 35.0%
AGAAGATAGGAGGATAGTTA+GGG + chr6_4:81804387-81804406 None:intergenic 35.0%
! ATATGTGATGGAGAGAAGAT+AGG + chr6_4:81804400-81804419 None:intergenic 35.0%
CATGTGGTGAATATATGTGA+TGG + chr6_4:81804412-81804431 None:intergenic 35.0%
GTGATCCATGAAATTGTCTA+AGG + chr6_4:81804669-81804688 None:intergenic 35.0%
AATGTTCTAGCAACAGTTTC+AGG + chr6_4:81805022-81805041 None:intergenic 35.0%
TTGCTAGAACATTAGTTCCA+CGG - chr6_4:81805029-81805048 Msa0999590:intron 35.0%
ATCAGTACACTTCAACTACA+TGG - chr6_4:81805194-81805213 Msa0999590:intron 35.0%
! TTCTACGTGGCATTATGTTT+TGG - chr6_4:81805458-81805477 Msa0999590:intron 35.0%
AAAGAAGTCGAAGGAAACAA+TGG - chr6_4:81805508-81805527 Msa0999590:intron 35.0%
! TTTCTATGTTTTGTCGTGTC+TGG + chr6_4:81805654-81805673 None:intergenic 35.0%
TTATAGCGCAAAACAACTCA+AGG + chr6_4:81805798-81805817 None:intergenic 35.0%
TGCATAACACATTGTCCATA+AGG + chr6_4:81805848-81805867 None:intergenic 35.0%
AGAAGTTTATGTGGACATGT+TGG + chr6_4:81806171-81806190 None:intergenic 35.0%
CTTGTGTAAGCTTCATGTAT+AGG - chr6_4:81806248-81806267 Msa0999590:exon 35.0%
GGTAGCTCAAATTCTTCATC+TGG - chr6_4:81801426-81801445 Msa0999590:three_prime_UTR 40.0%
!! TCATCTGGGTTGTTTGGTTT+TGG - chr6_4:81801441-81801460 Msa0999590:three_prime_UTR 40.0%
!! GGTTGATGAGGTTCTATCTA+AGG - chr6_4:81801677-81801696 Msa0999590:CDS 40.0%
!! GTTCTTTGTTAGGGTTGATG+AGG - chr6_4:81801791-81801810 Msa0999590:intron 40.0%
!! GGTTGATGAGGTTCTATGTA+TGG - chr6_4:81801803-81801822 Msa0999590:intron 40.0%
GCAATTGGATTTCAGATGTC+AGG - chr6_4:81802447-81802466 Msa0999590:CDS 40.0%
TTGGATTTCAGATGTCAGGT+TGG - chr6_4:81802451-81802470 Msa0999590:CDS 40.0%
TATAGTCGAGTTTCCGACAA+TGG - chr6_4:81802527-81802546 Msa0999590:CDS 40.0%
! ACATATGATACGAGGCATCT+TGG + chr6_4:81802570-81802589 None:intergenic 40.0%
CTGATATGGTATAGTTGGCT+TGG - chr6_4:81802643-81802662 Msa0999590:intron 40.0%
!! ATATGGTATAGTTGGCTTGG+AGG - chr6_4:81802646-81802665 Msa0999590:intron 40.0%
GACAATGATAGGTGCTAACT+GGG - chr6_4:81802681-81802700 Msa0999590:intron 40.0%
TTGGAAGATTATTGTCGCGA+AGG - chr6_4:81802706-81802725 Msa0999590:intron 40.0%
GTAATGTTGTCATCACTGGA+AGG - chr6_4:81802734-81802753 Msa0999590:intron 40.0%
CAAAGATGAACCAACTGCAT+TGG + chr6_4:81803165-81803184 None:intergenic 40.0%
GGCTAATGATGTTCAGAGAT+TGG - chr6_4:81803235-81803254 Msa0999590:intron 40.0%
!! AACTTTGCTGTTAGCGAACT+TGG - chr6_4:81803260-81803279 Msa0999590:intron 40.0%
! TCCTTATTTCTTGCTGAGTG+TGG - chr6_4:81803625-81803644 Msa0999590:intron 40.0%
ACCACACTCAGCAAGAAATA+AGG + chr6_4:81803629-81803648 None:intergenic 40.0%
!! TGAGTGTGGTTTCTGCTTTT+TGG - chr6_4:81803639-81803658 Msa0999590:intron 40.0%
CAGTGATGAAGACATCAAAC+AGG - chr6_4:81803757-81803776 Msa0999590:intron 40.0%
TCATAATACGCATGGCTTCT+CGG + chr6_4:81804032-81804051 None:intergenic 40.0%
ATTAAATATGTGGCCTGGCT+TGG + chr6_4:81804064-81804083 None:intergenic 40.0%
GCCAGGCCACATATTTAATA+TGG - chr6_4:81804065-81804084 Msa0999590:intron 40.0%
GTAGTTTCTTATCGAATGGG+AGG - chr6_4:81804152-81804171 Msa0999590:intron 40.0%
GAGAAGATAGGAGGATAGTT+AGG + chr6_4:81804388-81804407 None:intergenic 40.0%
AACATGATTGAAGGCTCATG+TGG + chr6_4:81804428-81804447 None:intergenic 40.0%
TGAGTGTTCTTCACAAGTCA+TGG - chr6_4:81804573-81804592 Msa0999590:intron 40.0%
AGGAGGAGTCAAGTAATTGA+TGG + chr6_4:81805083-81805102 None:intergenic 40.0%
!! TGGCATTATGTTTTGGACCT+TGG - chr6_4:81805465-81805484 Msa0999590:intron 40.0%
!! CATTATGTTTTGGACCTTGG+TGG - chr6_4:81805468-81805487 Msa0999590:intron 40.0%
! CTTCGACTTCTTTTTGTGTC+AGG + chr6_4:81805501-81805520 None:intergenic 40.0%
CTGACACAAAAAGAAGTCGA+AGG - chr6_4:81805499-81805518 Msa0999590:intron 40.0%
!! TGTCCGTGTTACTGATTCAA+AGG + chr6_4:81805631-81805650 None:intergenic 40.0%
CTAAACCTGTGTGTTCCTTA+TGG - chr6_4:81805830-81805849 Msa0999590:intron 40.0%
ATTGTCCATAAGGAACACAC+AGG + chr6_4:81805838-81805857 None:intergenic 40.0%
TGTGTACATCTCCATTGCAT+CGG + chr6_4:81805952-81805971 None:intergenic 40.0%
AGATGTACACAGAGAACACA+TGG - chr6_4:81805961-81805980 Msa0999590:CDS 40.0%
GCATCAGGATATTATGTTCC+AGG + chr6_4:81806053-81806072 None:intergenic 40.0%
ATGGGGAATGCTTGATTACA+TGG + chr6_4:81806287-81806306 None:intergenic 40.0%
AGGGCTTTCAAGAGTGAAGA+TGG - chr6_4:81801498-81801517 Msa0999590:three_prime_UTR 45.0%
GCTTTCAAGAGTGAAGATGG+TGG - chr6_4:81801501-81801520 Msa0999590:three_prime_UTR 45.0%
! TGAAGATGGTGGTGATGTGA+AGG - chr6_4:81801512-81801531 Msa0999590:three_prime_UTR 45.0%
!! AGCTGTTGTTAGGGTTGATG+AGG - chr6_4:81801665-81801684 Msa0999590:CDS 45.0%
TACTTGTGAGACTGTTTGGC+TGG + chr6_4:81802161-81802180 None:intergenic 45.0%
ATTGTGACCATGATGAGCAC+TGG - chr6_4:81802414-81802433 Msa0999590:intron 45.0%
ACTGGTGTGATCCTTGCAAT+TGG - chr6_4:81802432-81802451 Msa0999590:intron 45.0%
TGAAGGTGGAGATAGTCAGA+TGG - chr6_4:81802615-81802634 Msa0999590:intron 45.0%
! GTCAGATGGATGCACTGATA+TGG - chr6_4:81802629-81802648 Msa0999590:intron 45.0%
! TGGCTTGGAGGAGTTATCAT+TGG - chr6_4:81802658-81802677 Msa0999590:intron 45.0%
GGCTTGGAGGAGTTATCATT+GGG - chr6_4:81802659-81802678 Msa0999590:intron 45.0%
GGACAATGATAGGTGCTAAC+TGG - chr6_4:81802680-81802699 Msa0999590:intron 45.0%
CCAGTGATGACAACATTACG+CGG + chr6_4:81802733-81802752 None:intergenic 45.0%
CCTTCACAAAATTCGAGAGC+GGG + chr6_4:81803080-81803099 None:intergenic 45.0%
GCCTTCACAAAATTCGAGAG+CGG + chr6_4:81803081-81803100 None:intergenic 45.0%
AGCAACTGTCAAAGAGCTTG+AGG - chr6_4:81803118-81803137 Msa0999590:intron 45.0%
CATAATACGCATGGCTTCTC+GGG + chr6_4:81804031-81804050 None:intergenic 45.0%
ATGAGAAACCAAACCAAGCC+AGG - chr6_4:81804048-81804067 Msa0999590:intron 45.0%
! TGTGATGGAGAGAAGATAGG+AGG + chr6_4:81804397-81804416 None:intergenic 45.0%
GTGTTCTTCACAAGTCATGG+TGG - chr6_4:81804576-81804595 Msa0999590:intron 45.0%
TGCGGCCTTAGACAATTTCA+TGG - chr6_4:81804661-81804680 Msa0999590:intron 45.0%
!!! TGTGGCTTTTTTTTGCGCAG+TGG - chr6_4:81804950-81804969 Msa0999590:CDS 45.0%
ATGCGAGTCGTTAAAGGAAC+TGG - chr6_4:81805052-81805071 Msa0999590:intron 45.0%
AGTCGTTAAAGGAACTGGCA+AGG - chr6_4:81805057-81805076 Msa0999590:intron 45.0%
AAGGCAAGCAAGATTCTAGG+AGG + chr6_4:81805100-81805119 None:intergenic 45.0%
TCCTAGAATCTTGCTTGCCT+TGG - chr6_4:81805099-81805118 Msa0999590:intron 45.0%
ACCAAGGCAAGCAAGATTCT+AGG + chr6_4:81805103-81805122 None:intergenic 45.0%
!! ATGTTTTGGACCTTGGTGGT+TGG - chr6_4:81805472-81805491 Msa0999590:intron 45.0%
!! TGTTTTGGACCTTGGTGGTT+GGG - chr6_4:81805473-81805492 Msa0999590:intron 45.0%
GTTTCTTAGTCGGTCTGCTT+CGG + chr6_4:81805898-81805917 None:intergenic 45.0%
AAGCAGACCGACTAAGAAAC+TGG - chr6_4:81805898-81805917 Msa0999590:intron 45.0%
AGCAGACCGACTAAGAAACT+GGG - chr6_4:81805899-81805918 Msa0999590:intron 45.0%
TTTCGGCCCAGTTTCTTAGT+CGG + chr6_4:81805908-81805927 None:intergenic 45.0%
! GTTTTCCTTCACCGATGCAA+TGG - chr6_4:81805938-81805957 Msa0999590:CDS 45.0%
!! CTTGATTACATGGTGTCACG+TGG + chr6_4:81806277-81806296 None:intergenic 45.0%
GATCACACCAGTGCTCATCA+TGG + chr6_4:81802424-81802443 None:intergenic 50.0%
GATAGGTGCTAACTGGGTGT+TGG - chr6_4:81802687-81802706 Msa0999590:intron 50.0%
CCGCGTAATGTTGTCATCAC+TGG - chr6_4:81802730-81802749 Msa0999590:intron 50.0%
TGTGTGCAGTACAAGGGGAT+TGG - chr6_4:81802918-81802937 Msa0999590:CDS 50.0%
GTGTGCAGTACAAGGGGATT+GGG - chr6_4:81802919-81802938 Msa0999590:CDS 50.0%
AAGGGGATTGGGCAAAGCAT+TGG - chr6_4:81802930-81802949 Msa0999590:CDS 50.0%
!! GATTGGGCAAAGCATTGGCA+CGG - chr6_4:81802935-81802954 Msa0999590:CDS 50.0%
!! ATTGGGCAAAGCATTGGCAC+GGG - chr6_4:81802936-81802955 Msa0999590:CDS 50.0%
GGCACGGGAGTTTCTTCTTT+CGG - chr6_4:81802951-81802970 Msa0999590:intron 50.0%
GCACGGGAGTTTCTTCTTTC+GGG - chr6_4:81802952-81802971 Msa0999590:intron 50.0%
! CCCGCTCTCGAATTTTGTGA+AGG - chr6_4:81803077-81803096 Msa0999590:intron 50.0%
CAGTTGCTTGCACAGACTCA+GGG + chr6_4:81803106-81803125 None:intergenic 50.0%
ACAGTTGCTTGCACAGACTC+AGG + chr6_4:81803107-81803126 None:intergenic 50.0%
!! GAAGGCATTGCCAATGCAGT+TGG - chr6_4:81803152-81803171 Msa0999590:intron 50.0%
TTTGGGTAAGTGTGGCTGAC+TGG - chr6_4:81803294-81803313 Msa0999590:intron 50.0%
!! ATATGTGGCCTGGCTTGGTT+TGG + chr6_4:81804059-81804078 None:intergenic 50.0%
AATATGGACGGTGCAGGTTC+CGG - chr6_4:81804081-81804100 Msa0999590:intron 50.0%
AATACTCACACGGCTGTCAG+AGG + chr6_4:81804120-81804139 None:intergenic 50.0%
GAGTGCAAGCGATCGAAAGT+AGG - chr6_4:81804697-81804716 Msa0999590:intron 50.0%
AGTTCTGTGAGAACCATGCC+TGG + chr6_4:81804739-81804758 None:intergenic 50.0%
CCTTGGTCACTGCTTGGTTA+CGG - chr6_4:81805116-81805135 Msa0999590:intron 50.0%
! CATCTCCATTGCATCGGTGA+AGG + chr6_4:81805946-81805965 None:intergenic 50.0%
AGCACTAGCAGCAATTTGCC+TGG - chr6_4:81806032-81806051 Msa0999590:CDS 50.0%
GCATGGCTTCTCGGGTACAA+AGG + chr6_4:81804023-81804042 None:intergenic 55.0%
GGTGTCCATACAGCATCTCC+AGG - chr6_4:81804718-81804737 Msa0999590:intron 55.0%
CCATGCCTGGAGATGCTGTA+TGG + chr6_4:81804726-81804745 None:intergenic 55.0%
CCATACAGCATCTCCAGGCA+TGG - chr6_4:81804723-81804742 Msa0999590:intron 55.0%
CCTTTAACGACTCGCATCCG+TGG + chr6_4:81805049-81805068 None:intergenic 55.0%
CCACGGATGCGAGTCGTTAA+AGG - chr6_4:81805046-81805065 Msa0999590:intron 55.0%
TGCTTGCCTTGGTCACTGCT+TGG - chr6_4:81805110-81805129 Msa0999590:intron 55.0%
CCGTAACCAAGCAGTGACCA+AGG + chr6_4:81805119-81805138 None:intergenic 55.0%
!! AGGTCGCTGGTTTGACGATG+AGG - chr6_4:81805141-81805160 Msa0999590:CDS 55.0%
! GGAAAACCGTGCGCGGTTTT+CGG + chr6_4:81805925-81805944 None:intergenic 55.0%
! CAGAGGTGTGCTAGACCCTC+CGG + chr6_4:81804103-81804122 None:intergenic 60.0%
GTCACTGCTTGGTTACGGCG+AGG - chr6_4:81805121-81805140 Msa0999590:intron 60.0%
TGTCAGGCACCCAACCACCA+AGG + chr6_4:81805485-81805504 None:intergenic 60.0%
CGGTGAAGGAAAACCGTGCG+CGG + chr6_4:81805932-81805951 None:intergenic 60.0%
ATGGACGGTGCAGGTTCCGG+AGG - chr6_4:81804084-81804103 Msa0999590:intron 65.0%
TGGACGGTGCAGGTTCCGGA+GGG - chr6_4:81804085-81804104 Msa0999590:intron 65.0%
CTTGGTTACGGCGAGGTCGC+TGG - chr6_4:81805128-81805147 Msa0999590:intron 65.0%
ACTGGGCCGAAAACCGCGCA+CGG - chr6_4:81805916-81805935 Msa0999590:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 81801155 81806446 81801155 ID=Msa0999590;Name=Msa0999590
chr6_4 mRNA 81801155 81806446 81801155 ID=Msa0999590-mRNA-1;Parent=Msa0999590;Name=Msa0999590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=196|0.8|0.90|0.90|1|1|11|385|525
chr6_4 exon 81801155 81801725 81801155 ID=Msa0999590-mRNA-1:exon:15643;Parent=Msa0999590-mRNA-1
chr6_4 exon 81802439 81802631 81802439 ID=Msa0999590-mRNA-1:exon:15642;Parent=Msa0999590-mRNA-1
chr6_4 exon 81802834 81802956 81802834 ID=Msa0999590-mRNA-1:exon:15641;Parent=Msa0999590-mRNA-1
chr6_4 exon 81803471 81803610 81803471 ID=Msa0999590-mRNA-1:exon:15640;Parent=Msa0999590-mRNA-1
chr6_4 exon 81803823 81803891 81803823 ID=Msa0999590-mRNA-1:exon:15639;Parent=Msa0999590-mRNA-1
chr6_4 exon 81804303 81804498 81804303 ID=Msa0999590-mRNA-1:exon:15638;Parent=Msa0999590-mRNA-1
chr6_4 exon 81804600 81804674 81804600 ID=Msa0999590-mRNA-1:exon:15637;Parent=Msa0999590-mRNA-1
chr6_4 exon 81804846 81804981 81804846 ID=Msa0999590-mRNA-1:exon:15636;Parent=Msa0999590-mRNA-1
chr6_4 exon 81805133 81805211 81805133 ID=Msa0999590-mRNA-1:exon:15635;Parent=Msa0999590-mRNA-1
chr6_4 exon 81805777 81805809 81805777 ID=Msa0999590-mRNA-1:exon:15634;Parent=Msa0999590-mRNA-1
chr6_4 exon 81805903 81806446 81805903 ID=Msa0999590-mRNA-1:exon:15633;Parent=Msa0999590-mRNA-1
chr6_4 five_prime_UTR 81806251 81806446 81806251 ID=Msa0999590-mRNA-1:five_prime_utr;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81805903 81806250 81805903 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81805777 81805809 81805777 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81805133 81805211 81805133 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81804846 81804981 81804846 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81804600 81804674 81804600 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81804303 81804498 81804303 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81803823 81803891 81803823 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81803471 81803610 81803471 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81802834 81802956 81802834 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81802439 81802631 81802439 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 CDS 81801540 81801725 81801540 ID=Msa0999590-mRNA-1:cds;Parent=Msa0999590-mRNA-1
chr6_4 three_prime_UTR 81801155 81801539 81801155 ID=Msa0999590-mRNA-1:three_prime_utr;Parent=Msa0999590-mRNA-1
Gene Sequence

>Msa0999590

ATGGCTACTACAATTGTTAAGCTTCAAGTTTTTCCAGAGTGTAATTTGAATAAACATAAGCTTAGAAATGGATTTGGTAGCTCAAATTCTTCATCTGGGTTGTTTGGTTTTGGACAAAATTTTGGTGGGTTGTGTTTGAAAAAGTGTAGGGCTTTCAAGAGTGAAGATGGTGGTGATGTGAAGGAGAAAAAGTTGAGAAATTTGAAGAAAAGTGAAGTGAAAGTTCAAAGGGAAAATGGGTTTTGGAGTAATTTTAGAAATGTTTTGTTGGGGAATTTTATGATGGGTTCTAAGTTGGATGATGAGTATAGACAAGCTGTTGTTAGGGTTGATGAGGTTCTATCTAAGTTCTTTGTTAGGGTTGATGAGGTTCTATGTATGATTGCTGTTCAAATTGGAAGATATATTGTGACCATGATGAGCACTGGTGTGATCCTTGCAATTGGATTTCAGATGTCAGGTGGAGATAGTCAGATGGATGCACTGATATGGTATAGTTGGCTTGGAGGAGTTATCATTGGGACAATGATAGGTGCTAACTGGGTGTTGGAAGATTATTGTCGCGAAGGTCCGCGTAATGTTGTCATCACTGGAAGTACAAGGGGATTGGGCAAAGCATTGGCACGGGAGTTTCTTCTTTCGGGAGATCGTGTAATTGTTACTTCACGAAGCCCTGAGTCTGTGCAAGCAACTGTCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGTTCATCTTTGACAAAGCTTTCTCAAGCAAAAGTTGTAGGAATTGCTTGTGATGTTTGTGAGGCTAATGATGTTCAGAGATTGGCAAACTTTGCTGTTAGCGAACTTGGTTATATTGACATTTGGATAAACAATGCTGGAACAAATAAAGGTTTTAGACCATTGCTTCAATTCAGTGATGAAGACATCAAACAGATTGTCTCGACAAATTTGGTCGGTTCTATCCTTTGTACCCGAGAAGCCATGCGTATTATGAGAAACCAAACCAAGCCAGGCCACATATTTAATATGGACGGTGCAGGTTCCGGAGGGTCTAGCACACCTCTGACAGCCGTCTATGGTTCTACAAAATGCGGCCTTAGACAATTTCATGGATCACTATTGACGGAGTGCAAGCGATCGAAAGTAGGTGTCCATACAGCATCTCCAGGCATGGTTCTCACAGAACTTCTTTTAAGTGGTTCAACAATCCAAAACAAGCAAATGTTTAATATCATATGCGAGCTTCCTGAAACTGTTGCTAGAACATTAGTTCCACGGATGCGAGTCGTTAAAGGAACTGGCAAGGCCATCAATTACTTGACTCCTCCTAGAATCTTGCTTGCCTTGGTCACTGCTTGGTTACGGCGAGGTCGCTGGTTTGACGATGAGGGAAGAGCATTGTACTCAGCCGAAGCAGACCGACTAAGAAACTGGGCCGAAAACCGCGCACGGTTTTCCTTCACCGATGCAATGGAGATGTACACAGAGAACACATGGTTATCAGTCTTCTCACTTTCAGTTGTTTGTGCATTCATAATTCTTTCTAGCACTAGCAGCAATTTGCCTGGAACATAA

Protein sequence

>Msa0999590

MATTIVKLQVFPECNLNKHKLRNGFGSSNSSSGLFGFGQNFGGLCLKKCRAFKSEDGGDVKEKKLRNLKKSEVKVQRENGFWSNFRNVLLGNFMMGSKLDDEYRQAVVRVDEVLSKFFVRVDEVLCMIAVQIGRYIVTMMSTGVILAIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANWVLEDYCREGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATVKELEENLKEGIANAVGSSLTKLSQAKVVGIACDVCEANDVQRLANFAVSELGYIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRIMRNQTKPGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSLLTECKRSKVGVHTASPGMVLTELLLSGSTIQNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYSAEADRLRNWAENRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTSSNLPGT*