AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237260 MtrunA17_Chr8g0348281 72.840 243 24 5 42 257 1 228 9.87e-117 333
Msa1237260 MtrunA17_Chr4g0019171 83.721 86 9 1 42 122 1 86 5.89e-44 143
Msa1237260 MtrunA17_Chr4g0019181 89.474 57 6 0 152 208 92 148 2.20e-30 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237260 AT2G46100.1 45.868 242 89 5 36 243 2 235 1.84e-62 196
Msa1237260 AT2G46100.2 49.180 183 76 3 36 209 2 176 2.85e-51 167

Find 51 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGAACTGCACTAATTT+TGG 0.093922 8_2:-16550894 Msa1237260:CDS
GTGATTGAGACTCTTGATTT+TGG 0.164111 8_2:+16552853 None:intergenic
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_2:-16553003 Msa1237260:CDS
AAAGTTTGCTTAATTATTGA+TGG 0.279708 8_2:-16549574 Msa1237260:three_prime_UTR
AGGAATATCCTGTATATATA+TGG 0.323875 8_2:-16549710 Msa1237260:three_prime_UTR
TATGGTTTACCAGATTAATT+AGG 0.325566 8_2:-16549692 Msa1237260:three_prime_UTR
TTGTGGTGATGATGTTGTTT+TGG 0.338335 8_2:+16552921 None:intergenic
TGCATTGACTTTGAAACCTA+TGG 0.339115 8_2:+16552886 None:intergenic
CACATGTAAATCTGTGATAT+TGG 0.354589 8_2:-16549778 Msa1237260:three_prime_UTR
CTTTGTTCAAGCAAATTCTA+AGG 0.371129 8_2:-16549906 Msa1237260:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.379365 8_2:-16552804 Msa1237260:CDS
ATTCACAGACCTAATTAATC+TGG 0.444076 8_2:+16549683 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_2:+16549702 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_2:-16549945 Msa1237260:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_2:-16549752 Msa1237260:three_prime_UTR
TTGAAGTTGTCCAGGTGAAT+AGG 0.447945 8_2:-16549841 Msa1237260:exon
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_2:+16552962 None:intergenic
TTTAAGCTAAATCCCTTGCT+TGG 0.486712 8_2:+16549883 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_2:-16550952 Msa1237260:CDS
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 8_2:-16550911 Msa1237260:CDS
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_2:-16549679 Msa1237260:three_prime_UTR
GTAAAATTTAAATACAAGGC+AGG 0.505184 8_2:-16553071 Msa1237260:CDS
TTATGTAAAATTTAAATACA+AGG 0.512231 8_2:-16553075 Msa1237260:CDS
TGTTAGAATCTAAGAACAAA+CGG 0.513330 8_2:+16553042 None:intergenic
TGCTACTTTGAGAAATGCAT+TGG 0.514552 8_2:+16552827 None:intergenic
TGTGAATTTGCGGATCCAGC+AGG 0.515298 8_2:-16550942 Msa1237260:CDS
GAAGCTTCTTCTTCATCAGA+TGG 0.522340 8_2:+16552756 None:intergenic
TTCTATGGTGAACTCTATCA+AGG 0.526181 8_2:+16553260 Msa1237270:five_prime_UTR
GTAGGAGCTTATGATGTACT+AGG 0.528168 8_2:-16549730 Msa1237260:three_prime_UTR
TACAACAGAAGCACGATCAA+TGG 0.528751 8_2:+16552713 None:intergenic
CTAGGTGGTTGAAGTTGTCC+AGG 0.532035 8_2:-16549849 Msa1237260:CDS
TTATAATTTACCTATTCACC+TGG 0.532917 8_2:+16549831 None:intergenic
CAAATATGAATCTTATGAAG+TGG 0.534161 8_2:-16550854 Msa1237260:CDS
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_2:-16549953 Msa1237260:intron
AGTCCTTTAAAAGATCCTGC+TGG 0.537997 8_2:+16550927 None:intergenic
CACATTGAATGCATATGAAG+AGG 0.540073 8_2:-16550967 Msa1237260:CDS
GCAAATTCTAAGGCCAAGCA+AGG 0.552018 8_2:-16549896 Msa1237260:CDS
CTTCTTCATCAGATGGAGAA+CGG 0.564350 8_2:+16552763 None:intergenic
TAATTATAGAAGTCTATGGT+AGG 0.578652 8_2:-16549748 Msa1237260:three_prime_UTR
AAATATGAATCTTATGAAGT+GGG 0.579165 8_2:-16550853 Msa1237260:CDS
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_2:+16553148 Msa1237270:five_prime_UTR
GCTTAAAAGATTATGTGACT+AGG 0.588291 8_2:-16549867 Msa1237260:CDS
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_2:+16552949 None:intergenic
AGGTTTCAAAGTCAATGCAA+TGG 0.605626 8_2:-16552882 Msa1237260:CDS
TAATATATGCTGCAGCAACT+GGG 0.621935 8_2:-16550092 Msa1237260:intron
TAAAAGATTATGTGACTAGG+TGG 0.630969 8_2:-16549864 Msa1237260:CDS
ATGCATTTCTCAAAGTAGCA+TGG 0.641262 8_2:-16552824 Msa1237260:CDS
CAAATTCTAAGGCCAAGCAA+GGG 0.656167 8_2:-16549895 Msa1237260:CDS
AAATTTAAATACAAGGCAGG+TGG 0.662495 8_2:-16553068 Msa1237260:CDS
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 8_2:+16552732 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_2:+16552943 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTAAAATTTAAATACA+AGG - chr8_2:16549741-16549760 Msa1237260:three_prime_UTR 10.0%
!!! TTAAAATTAATCTTTTTATC+GGG - chr8_2:16552236-16552255 Msa1237260:intron 10.0%
!! AAAAAAAATTGAATCTTCTA+TGG + chr8_2:16549574-16549593 None:intergenic 15.0%
!!! ACCTATTTTTTTTTTAGAAA+CGG + chr8_2:16551225-16551244 None:intergenic 15.0%
!!! TCAAATTTGTTAGTTTAATT+AGG + chr8_2:16551270-16551289 None:intergenic 15.0%
!! AATATCTAATAAATCTCTAA+CGG - chr8_2:16551344-16551363 Msa1237260:intron 15.0%
!!! ATATTATTTTGATACACAAT+CGG - chr8_2:16552755-16552774 Msa1237260:CDS 15.0%
!!! TATAGCTTCAATTTTAAGTA+TGG - chr8_2:16550249-16550268 Msa1237260:intron 20.0%
!!! TACTACTCAATAATGTTTTA+GGG - chr8_2:16551617-16551636 Msa1237260:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG + chr8_2:16551734-16551753 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG - chr8_2:16551785-16551804 Msa1237260:intron 20.0%
!! AAATATGAATCTTATGAAGT+GGG - chr8_2:16551963-16551982 Msa1237260:intron 20.0%
!!! TATTATTTTGATACACAATC+GGG - chr8_2:16552756-16552775 Msa1237260:CDS 20.0%
!!! AAAGTTTGCTTAATTATTGA+TGG - chr8_2:16553242-16553261 Msa1237260:five_prime_UTR 20.0%
! GTAAAATTTAAATACAAGGC+AGG - chr8_2:16549745-16549764 Msa1237260:three_prime_UTR 25.0%
! TGTTAGAATCTAAGAACAAA+CGG + chr8_2:16549777-16549796 None:intergenic 25.0%
!!! TATGGATTTTTGTGTTATTG+TGG + chr8_2:16549915-16549934 None:intergenic 25.0%
! ACAATAACACAAAAATCCAT+AGG - chr8_2:16549914-16549933 Msa1237260:CDS 25.0%
! GTTAAGAATAATCCAAACAA+AGG + chr8_2:16550223-16550242 None:intergenic 25.0%
!!! TGTCTTTTTTACTCATCATT+TGG - chr8_2:16550285-16550304 Msa1237260:intron 25.0%
! CATTCATAAAATAAGCAAGT+CGG + chr8_2:16550848-16550867 None:intergenic 25.0%
! ACCAGAAAAACAAAAAATTG+AGG + chr8_2:16551013-16551032 None:intergenic 25.0%
!! GCCGTTTCTAAAAAAAAAAT+AGG - chr8_2:16551221-16551240 Msa1237260:intron 25.0%
! TGTTAAATGTAGTTAGAAGT+TGG + chr8_2:16551315-16551334 None:intergenic 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + chr8_2:16551461-16551480 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - chr8_2:16551465-16551484 Msa1237260:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - chr8_2:16551616-16551635 Msa1237260:intron 25.0%
! TTATATAGGAAGCAATGATT+TGG + chr8_2:16551720-16551739 None:intergenic 25.0%
! CAAAATGAAGCTAATACAAT+TGG - chr8_2:16551749-16551768 Msa1237260:intron 25.0%
! CAAATATGAATCTTATGAAG+TGG - chr8_2:16551962-16551981 Msa1237260:intron 25.0%
!! AAATATAGTCTTGCAACTTA+AGG - chr8_2:16552034-16552053 Msa1237260:intron 25.0%
!!! CTTAAGGTTTTAAATTGTAG+TGG - chr8_2:16552050-16552069 Msa1237260:intron 25.0%
! TGAAGAAAATAAAATCCAAG+AGG + chr8_2:16552586-16552605 None:intergenic 25.0%
!!! TTTCTTCATTTTTACACTGT+TGG - chr8_2:16552598-16552617 Msa1237260:intron 25.0%
! TTATAATTTACCTATTCACC+TGG + chr8_2:16552988-16553007 None:intergenic 25.0%
! GTACTAATTATAGAAGTCTA+TGG - chr8_2:16553064-16553083 Msa1237260:CDS 25.0%
! TAATTATAGAAGTCTATGGT+AGG - chr8_2:16553068-16553087 Msa1237260:CDS 25.0%
! AGGAATATCCTGTATATATA+TGG - chr8_2:16553106-16553125 Msa1237260:CDS 25.0%
! TATGGTTTACCAGATTAATT+AGG - chr8_2:16553124-16553143 Msa1237260:exon 25.0%
! ACCAGAAAAAATAACAGAAA+AGG - chr8_2:16553167-16553186 Msa1237260:five_prime_UTR 25.0%
!!! TCCTTTTCTGTTATTTTTTC+TGG + chr8_2:16553171-16553190 Msa1237270:five_prime_UTR 25.0%
!!! CTTCATTTTTTTTTGTGACG+TGG - chr8_2:16549610-16549629 Msa1237260:three_prime_UTR 30.0%
!!! TTTTTTTTGTGACGTGGATT+TGG - chr8_2:16549616-16549635 Msa1237260:three_prime_UTR 30.0%
! TTAAAATAACAGCTCTAGTG+TGG + chr8_2:16549671-16549690 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + chr8_2:16549695-16549714 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - chr8_2:16549692-16549711 Msa1237260:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + chr8_2:16549704-16549723 None:intergenic 30.0%
AAATTTAAATACAAGGCAGG+TGG - chr8_2:16549748-16549767 Msa1237260:three_prime_UTR 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - chr8_2:16549813-16549832 Msa1237260:three_prime_UTR 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - chr8_2:16550147-16550166 Msa1237260:intron 30.0%
!!! TGCTTTTTCTTGTCTTATGT+TGG - chr8_2:16550180-16550199 Msa1237260:intron 30.0%
! ACCAATTTGTTTCCTTTGTT+TGG - chr8_2:16550208-16550227 Msa1237260:intron 30.0%
TCCAAACAAAGGAAACAAAT+TGG + chr8_2:16550212-16550231 None:intergenic 30.0%
!! TCATTTGGATGATTGATTTG+TGG - chr8_2:16550300-16550319 Msa1237260:intron 30.0%
AGGAATAATAAGATTCGTAG+AGG - chr8_2:16550674-16550693 Msa1237260:intron 30.0%
! ATAAGATTCGTAGAGGTTTT+CGG - chr8_2:16550681-16550700 Msa1237260:intron 30.0%
!!! CGACTTGCTTATTTTATGAA+TGG - chr8_2:16550846-16550865 Msa1237260:CDS 30.0%
!!! GCTTATTTTATGAATGGAGT+TGG - chr8_2:16550852-16550871 Msa1237260:CDS 30.0%
!!! GCTGTTTTTTTTCTGCTATT+TGG - chr8_2:16550977-16550996 Msa1237260:CDS 30.0%
!! TTTTTCTGCTATTTGGCATA+TGG - chr8_2:16550984-16551003 Msa1237260:intron 30.0%
!!! GCCTCAATTTTTTGTTTTTC+TGG - chr8_2:16551009-16551028 Msa1237260:intron 30.0%
!!! ATTTTTTGTTTTTCTGGTGC+TGG - chr8_2:16551015-16551034 Msa1237260:intron 30.0%
!! GTTAACGTTTTTAGACTAGA+AGG - chr8_2:16551057-16551076 Msa1237260:intron 30.0%
!!! AGAGCTTTTTTGAGTTTTTC+AGG - chr8_2:16551100-16551119 Msa1237260:intron 30.0%
!!! TTTTTGAGTTTTTCAGGTTG+TGG - chr8_2:16551106-16551125 Msa1237260:intron 30.0%
!!! TTTTGAGTTTTTCAGGTTGT+GGG - chr8_2:16551107-16551126 Msa1237260:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG - chr8_2:16551561-16551580 Msa1237260:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG - chr8_2:16551622-16551641 Msa1237260:intron 30.0%
TTATAATCAGATGGTTCACA+TGG - chr8_2:16551794-16551813 Msa1237260:intron 30.0%
! AAAAGGAACTGCACTAATTT+TGG - chr8_2:16551922-16551941 Msa1237260:intron 30.0%
!!! AAGGTTTTAAATTGTAGTGG+CGG - chr8_2:16552053-16552072 Msa1237260:intron 30.0%
! TTAATCTTTTTATCGGGTGT+TGG - chr8_2:16552242-16552261 Msa1237260:intron 30.0%
!!! TTTTTTCCATGACAGGATAA+AGG - chr8_2:16552302-16552321 Msa1237260:intron 30.0%
TGAAATGTACCAGAAAGAAT+AGG + chr8_2:16552474-16552493 None:intergenic 30.0%
AGTGATTCAATCAATTGGAT+AGG + chr8_2:16552499-16552518 None:intergenic 30.0%
TCATCAGTGATTCAATCAAT+TGG + chr8_2:16552504-16552523 None:intergenic 30.0%
CTAAATTCCTGAAAACTTTC+AGG - chr8_2:16552856-16552875 Msa1237260:CDS 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - chr8_2:16552910-16552929 Msa1237260:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG - chr8_2:16552949-16552968 Msa1237260:CDS 30.0%
TAAAAGATTATGTGACTAGG+TGG - chr8_2:16552952-16552971 Msa1237260:CDS 30.0%
CACATGTAAATCTGTGATAT+TGG - chr8_2:16553038-16553057 Msa1237260:CDS 30.0%
CTGGTAAACCATATATATAC+AGG + chr8_2:16553117-16553136 Msa1237270:five_prime_UTR 30.0%
ATTCACAGACCTAATTAATC+TGG + chr8_2:16553136-16553155 Msa1237270:five_prime_UTR 30.0%
ATTAATTAGGTCTGTGAATG+TGG - chr8_2:16553137-16553156 Msa1237260:five_prime_UTR 30.0%
TTCTATGGTGAACTCTATCA+AGG + chr8_2:16549559-16549578 None:intergenic 35.0%
!! TTGTGGTGATGATGTTGTTT+TGG + chr8_2:16549898-16549917 None:intergenic 35.0%
!! TGCATTGACTTTGAAACCTA+TGG + chr8_2:16549933-16549952 None:intergenic 35.0%
AGGTTTCAAAGTCAATGCAA+TGG - chr8_2:16549934-16549953 Msa1237260:CDS 35.0%
! GTGATTGAGACTCTTGATTT+TGG + chr8_2:16549966-16549985 None:intergenic 35.0%
!! TGCTACTTTGAGAAATGCAT+TGG + chr8_2:16549992-16550011 None:intergenic 35.0%
ATGCATTTCTCAAAGTAGCA+TGG - chr8_2:16549992-16550011 Msa1237260:intron 35.0%
! AGACAAGAAAAAGCATGTGA+TGG + chr8_2:16550175-16550194 None:intergenic 35.0%
!! GATGATTGATTTGTGGAGAA+AGG - chr8_2:16550307-16550326 Msa1237260:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG - chr8_2:16550330-16550349 Msa1237260:intron 35.0%
ACTCGTAGTTACTGATAAGT+GGG - chr8_2:16550357-16550376 Msa1237260:intron 35.0%
TCTTAGCATTGTAATGGTTG+AGG - chr8_2:16550920-16550939 Msa1237260:CDS 35.0%
!!! TTTGAGTTTTTCAGGTTGTG+GGG - chr8_2:16551108-16551127 Msa1237260:intron 35.0%
TCAGGAGCAATGTTGTAATA+TGG - chr8_2:16551396-16551415 Msa1237260:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG - chr8_2:16551644-16551663 Msa1237260:intron 35.0%
CACATTGAATGCATATGAAG+AGG - chr8_2:16551849-16551868 Msa1237260:intron 35.0%
TGAAGAGGATTGTGAATTTG+CGG - chr8_2:16551864-16551883 Msa1237260:intron 35.0%
! CACTAATTTTGGATCACTTC+TGG - chr8_2:16551933-16551952 Msa1237260:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - chr8_2:16551975-16551994 Msa1237260:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + chr8_2:16552010-16552029 None:intergenic 35.0%
! TGGTTAGCTGTGTAATCTAA+AGG - chr8_2:16552156-16552175 Msa1237260:intron 35.0%
TTAATCTCCTGCTAATCATC+TGG - chr8_2:16552187-16552206 Msa1237260:intron 35.0%
!!! GCATACATTTTTTCCATGAC+AGG - chr8_2:16552295-16552314 Msa1237260:intron 35.0%
TGCTGCAGCATATATTAACA+TGG + chr8_2:16552721-16552740 None:intergenic 35.0%
TTAATATATGCTGCAGCAAC+TGG - chr8_2:16552723-16552742 Msa1237260:CDS 35.0%
TAATATATGCTGCAGCAACT+GGG - chr8_2:16552724-16552743 Msa1237260:CDS 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + chr8_2:16552903-16552922 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+TGG + chr8_2:16552936-16552955 None:intergenic 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG + chr8_2:16549870-16549889 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG + chr8_2:16549876-16549895 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - chr8_2:16550012-16550031 Msa1237260:intron 40.0%
CTTCTTCATCAGATGGAGAA+CGG + chr8_2:16550056-16550075 None:intergenic 40.0%
GAAGCTTCTTCTTCATCAGA+TGG + chr8_2:16550063-16550082 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG + chr8_2:16550087-16550106 None:intergenic 40.0%
! TACAACAGAAGCACGATCAA+TGG + chr8_2:16550106-16550125 None:intergenic 40.0%
GACTCGTAGTTACTGATAAG+TGG - chr8_2:16550356-16550375 Msa1237260:intron 40.0%
AACGATTGTTGGGTTACGAT+TGG - chr8_2:16550397-16550416 Msa1237260:intron 40.0%
ACGATTGTTGGGTTACGATT+GGG - chr8_2:16550398-16550417 Msa1237260:intron 40.0%
AATCAGTGTAAATACACCCG+CGG - chr8_2:16550559-16550578 Msa1237260:intron 40.0%
! TGTGGAATAGTTTGTGGAGA+TGG - chr8_2:16550585-16550604 Msa1237260:intron 40.0%
! AATAGTTTGTGGAGATGGCT+TGG - chr8_2:16550590-16550609 Msa1237260:intron 40.0%
! ACAGAATCTGTTCTTGCTGT+GGG - chr8_2:16550631-16550650 Msa1237260:intron 40.0%
! GTAGAGGTTTTCGGTTGATT+TGG - chr8_2:16550690-16550709 Msa1237260:intron 40.0%
TTGTGATGTTGCTGAGATAG+TGG - chr8_2:16550772-16550791 Msa1237260:intron 40.0%
!!! AAGAGTGTCTTTTGCGTTGA+CGG - chr8_2:16550880-16550899 Msa1237260:CDS 40.0%
GTGGCATCTTAGCATTGTAA+TGG - chr8_2:16550914-16550933 Msa1237260:CDS 40.0%
GCAACAACAACAGAAGACAA+AGG + chr8_2:16551151-16551170 None:intergenic 40.0%
ATTCACAACAAGTGTGTGCA+AGG + chr8_2:16551195-16551214 None:intergenic 40.0%
GTTAGAATAGAACAGCTACC+TGG + chr8_2:16551582-16551601 None:intergenic 40.0%
! GATCCAGCAGGATCTTTTAA+AGG - chr8_2:16551886-16551905 Msa1237260:intron 40.0%
! AGTCCTTTAAAAGATCCTGC+TGG + chr8_2:16551892-16551911 None:intergenic 40.0%
AAGGACTTCAGCGTTTCAAA+AGG - chr8_2:16551905-16551924 Msa1237260:intron 40.0%
AAAGCCTAAACAGTCTCAAC+TGG - chr8_2:16552136-16552155 Msa1237260:intron 40.0%
CTAACCAGTTGAGACTGTTT+AGG + chr8_2:16552143-16552162 None:intergenic 40.0%
CCAATTCCTTTATCCTGTCA+TGG + chr8_2:16552311-16552330 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - chr8_2:16552308-16552327 Msa1237260:intron 40.0%
GCATTGGAATGTGCCAAAAA+TGG - chr8_2:16552887-16552906 Msa1237260:CDS 40.0%
!! CAAATTCTAAGGCCAAGCAA+GGG - chr8_2:16552921-16552940 Msa1237260:CDS 40.0%
TTGAAGTTGTCCAGGTGAAT+AGG - chr8_2:16552975-16552994 Msa1237260:CDS 40.0%
GTAGGAGCTTATGATGTACT+AGG - chr8_2:16553086-16553105 Msa1237260:CDS 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG + chr8_2:16549857-16549876 None:intergenic 45.0%
GTAGTTACTGATAAGTGGGC+AGG - chr8_2:16550361-16550380 Msa1237260:intron 45.0%
TTACTGATAAGTGGGCAGGT+CGG - chr8_2:16550365-16550384 Msa1237260:intron 45.0%
CAGATTCTGTGGTAACACCA+AGG + chr8_2:16550621-16550640 None:intergenic 45.0%
CACAGCAAGAACAGATTCTG+TGG + chr8_2:16550632-16550651 None:intergenic 45.0%
CACAGAATCTGTTCTTGCTG+TGG - chr8_2:16550630-16550649 Msa1237260:intron 45.0%
! AATCTGTTCTTGCTGTGGGA+GGG - chr8_2:16550635-16550654 Msa1237260:intron 45.0%
! TGATGTTGCTGAGATAGTGG+AGG - chr8_2:16550775-16550794 Msa1237260:intron 45.0%
!! TGAGATAGTGGAGGCGATTA+AGG - chr8_2:16550784-16550803 Msa1237260:intron 45.0%
!! AGGCGATTAAGGTTTTGTCC+TGG - chr8_2:16550795-16550814 Msa1237260:intron 45.0%
!! CGATTAAGGTTTTGTCCTGG+AGG - chr8_2:16550798-16550817 Msa1237260:intron 45.0%
!! TTAAGGTTTTGTCCTGGAGG+TGG - chr8_2:16550801-16550820 Msa1237260:intron 45.0%
GTCAACGCAAAAGACACTCT+TGG + chr8_2:16550881-16550900 None:intergenic 45.0%
!!! GTTGACGGTGCAGTTTTTTG+TGG - chr8_2:16550895-16550914 Msa1237260:CDS 45.0%
AGCATTGTAATGGTTGAGGC+TGG - chr8_2:16550924-16550943 Msa1237260:CDS 45.0%
GCATTGTAATGGTTGAGGCT+GGG - chr8_2:16550925-16550944 Msa1237260:CDS 45.0%
CATTGTAATGGTTGAGGCTG+GGG - chr8_2:16550926-16550945 Msa1237260:CDS 45.0%
! GCTCTAAACAGCAAAACAGC+AGG + chr8_2:16551085-16551104 None:intergenic 45.0%
GAGCACAACAAAAAACTCGC+GGG + chr8_2:16551173-16551192 None:intergenic 45.0%
GGAGCACAACAAAAAACTCG+CGG + chr8_2:16551174-16551193 None:intergenic 45.0%
ATCTATTCCTCCCAACTCTC+AGG - chr8_2:16551820-16551839 Msa1237260:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG + chr8_2:16551833-16551852 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG + chr8_2:16551834-16551853 None:intergenic 45.0%
!!! AGTGGGAAGATTTTGAGGTG+AGG - chr8_2:16551980-16551999 Msa1237260:intron 45.0%
TCGAGAACCAGATGATTAGC+AGG + chr8_2:16552197-16552216 None:intergenic 45.0%
AGGATAAAGGAATTGGCCAC+TGG - chr8_2:16552315-16552334 Msa1237260:intron 45.0%
AAGAATAGGCCTCCAAGGAA+AGG + chr8_2:16552460-16552479 None:intergenic 45.0%
TGCATTTCTCTCGAACCTCT+TGG - chr8_2:16552568-16552587 Msa1237260:intron 45.0%
! CACAATCGGGAAAAGTATGC+AGG - chr8_2:16552769-16552788 Msa1237260:CDS 45.0%
! CCACATGCCTGAAAGTTTTC+AGG + chr8_2:16552866-16552885 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG - chr8_2:16552863-16552882 Msa1237260:CDS 45.0%
!! GCAAATTCTAAGGCCAAGCA+AGG - chr8_2:16552920-16552939 Msa1237260:CDS 45.0%
!!! TTTAAAATTAATCTTTTTAT+CGG - chr8_2:16552235-16552254 Msa1237260:intron 5.0%
GCCAGGCTCAAACGATTGTT+GGG - chr8_2:16550387-16550406 Msa1237260:intron 50.0%
ACCCAACAATCGTTTGAGCC+TGG + chr8_2:16550391-16550410 None:intergenic 50.0%
! TTGGGTTACGATTGGGTTGC+TGG - chr8_2:16550405-16550424 Msa1237260:intron 50.0%
AAACTATTCCACACCTCCGC+GGG + chr8_2:16550578-16550597 None:intergenic 50.0%
CAAACTATTCCACACCTCCG+CGG + chr8_2:16550579-16550598 None:intergenic 50.0%
! CGGAGGTGTGGAATAGTTTG+TGG - chr8_2:16550579-16550598 Msa1237260:intron 50.0%
!! GAGATGGCTTGGTTGTTCCT+TGG - chr8_2:16550601-16550620 Msa1237260:intron 50.0%
! GAATCTGTTCTTGCTGTGGG+AGG - chr8_2:16550634-16550653 Msa1237260:intron 50.0%
! ACACCGCGGTTTGGAGTTTA+TGG - chr8_2:16550714-16550733 Msa1237260:intron 50.0%
CCTCCATAAACTCCAAACCG+CGG + chr8_2:16550720-16550739 None:intergenic 50.0%
! CGCGGTTTGGAGTTTATGGA+GGG - chr8_2:16550718-16550737 Msa1237260:intron 50.0%
!!! TCTGGTGCTGGTCTGCTTTT+TGG - chr8_2:16551027-16551046 Msa1237260:intron 50.0%
!!! CTGGTGCTGGTCTGCTTTTT+GGG - chr8_2:16551028-16551047 Msa1237260:intron 50.0%
!!! TTTTCAGGTTGTGGGGTTGC+TGG - chr8_2:16551115-16551134 Msa1237260:intron 50.0%
AACACTTTGCTCCAGCAGTG+TGG - chr8_2:16551372-16551391 Msa1237260:intron 50.0%
TACGTCTTCGACTGCAAAGC+GGG + chr8_2:16551499-16551518 None:intergenic 50.0%
CTACGTCTTCGACTGCAAAG+CGG + chr8_2:16551500-16551519 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+AGG - chr8_2:16551874-16551893 Msa1237260:intron 50.0%
GCTGCGTCTTATCCTTTCCT+TGG - chr8_2:16552445-16552464 Msa1237260:intron 50.0%
GCGTCTTATCCTTTCCTTGG+AGG - chr8_2:16552448-16552467 Msa1237260:intron 50.0%
CCAGAAAGAATAGGCCTCCA+AGG + chr8_2:16552465-16552484 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG - chr8_2:16552462-16552481 Msa1237260:intron 50.0%
CTTTCAGGCATGTGGAGCAT+TGG - chr8_2:16552871-16552890 Msa1237260:CDS 50.0%
CTAGGTGGTTGAAGTTGTCC+AGG - chr8_2:16552967-16552986 Msa1237260:CDS 50.0%
GGCCAGGCTCAAACGATTGT+TGG - chr8_2:16550386-16550405 Msa1237260:intron 55.0%
CAGTGTAAATACACCCGCGG+AGG - chr8_2:16550562-16550581 Msa1237260:intron 55.0%
TAAATACACCCGCGGAGGTG+TGG - chr8_2:16550567-16550586 Msa1237260:intron 55.0%
! TGTTCTTGCTGTGGGAGGGT+TGG - chr8_2:16550639-16550658 Msa1237260:intron 55.0%
AGGGTTGGAATGATGCTGCG+AGG - chr8_2:16550654-16550673 Msa1237260:intron 55.0%
!! TCGGTTGATTTGGCACACCG+CGG - chr8_2:16550700-16550719 Msa1237260:intron 55.0%
! TGATTTGGCACACCGCGGTT+TGG - chr8_2:16550705-16550724 Msa1237260:intron 55.0%
! CCGCGGTTTGGAGTTTATGG+AGG - chr8_2:16550717-16550736 Msa1237260:intron 55.0%
ACGACTCAAAGTCCACCTCC+AGG + chr8_2:16550816-16550835 None:intergenic 55.0%
TTGCTCCAGCAGTGTGGTTC+AGG - chr8_2:16551378-16551397 Msa1237260:intron 55.0%
TTGCTCCTGAACCACACTGC+TGG + chr8_2:16551386-16551405 None:intergenic 55.0%
CGCTTTGCAGTCGAAGACGT+AGG - chr8_2:16551498-16551517 Msa1237260:intron 55.0%
GAGATCTCCTGAGAGTTGGG+AGG + chr8_2:16551830-16551849 None:intergenic 55.0%
GATAAGTGGGCAGGTCGGCC+AGG - chr8_2:16550370-16550389 Msa1237260:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16549554 16553284 16549554 ID=Msa1237260;Name=Msa1237260
chr8_2 mRNA 16549554 16553284 16549554 ID=Msa1237260-mRNA-1;Parent=Msa1237260;Name=Msa1237260-mRNA-1;_AED=0.24;_eAED=0.24;_QI=155|0.33|0.75|1|0.33|0.75|4|292|257
chr8_2 exon 16549554 16549960 16549554 ID=Msa1237260-mRNA-1:exon:6238;Parent=Msa1237260-mRNA-1
chr8_2 exon 16550056 16550099 16550056 ID=Msa1237260-mRNA-1:exon:6237;Parent=Msa1237260-mRNA-1
chr8_2 exon 16550842 16550996 16550842 ID=Msa1237260-mRNA-1:exon:6236;Parent=Msa1237260-mRNA-1
chr8_2 exon 16552670 16553284 16552670 ID=Msa1237260-mRNA-1:exon:6235;Parent=Msa1237260-mRNA-1
chr8_2 five_prime_UTR 16553130 16553284 16553130 ID=Msa1237260-mRNA-1:five_prime_utr;Parent=Msa1237260-mRNA-1
chr8_2 CDS 16552670 16553129 16552670 ID=Msa1237260-mRNA-1:cds;Parent=Msa1237260-mRNA-1
chr8_2 CDS 16550842 16550996 16550842 ID=Msa1237260-mRNA-1:cds;Parent=Msa1237260-mRNA-1
chr8_2 CDS 16550056 16550099 16550056 ID=Msa1237260-mRNA-1:cds;Parent=Msa1237260-mRNA-1
chr8_2 CDS 16549846 16549960 16549846 ID=Msa1237260-mRNA-1:cds;Parent=Msa1237260-mRNA-1
chr8_2 three_prime_UTR 16549554 16549845 16549554 ID=Msa1237260-mRNA-1:three_prime_utr;Parent=Msa1237260-mRNA-1
Gene Sequence

>Msa1237260

ATGTGGCTAGCATTAATTAGAAACTTAGATATTTATGTAAAATTTAAATACAAGGCAGGTGGCAACCGTTTGTTCTTAGATTCTAACAAAATCATTCTAACGTTTGTTCTCTTGTTTAGTTTCATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACATCATCACCACAATAACACAAAAATCCATAGGTTTCAAAGTCAATGCAATGGAACAAACCAAAATCAAGAGTCTCAATCACAGACCAATGCATTTCTCAAAGTAGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGTTTCTGCTTTCCGTTCTCCATCTGATGAAGAAGAAGCTTCTCCTCAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTAGACACGATCAAACAAGACTTTCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCAGGATCTTTTAAAGGACTTCAGCGTTTCAAAAGGAACTGCACTAATTTTGGATCACTTCTGGAGAAGTCAAATATGAATCTTATGAAGTGGGAAGATTTTGAGCAACTGGGTACACAGAATATTATTTTGATACACAATCGGGAAAAGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCAAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTGGTTGAAGTTGTCCAGGTGA

Protein sequence

>Msa1237260

MWLALIRNLDIYVKFKYKAGGNRLFLDSNKIILTFVLLFSFMALSAISSISHNHHHTSLFFAPKQHHHHNNTKIHRFQSQCNGTNQNQESQSQTNAFLKVAWYSSELLGIAVSAFRSPSDEEEASPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSNMNLMKWEDFEQLGTQNIILIHNREKHVEHWNVPKMALFKQILRPSKGFSLKDYVTRWLKLSR*