Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820730 | XP_024639128.2 | 88.491 | 391 | 38 | 2 | 4 | 393 | 1 | 385 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820730 | sp|Q8S9H7|DIV_ANTMA | 61.644 | 73 | 24 | 2 | 282 | 353 | 134 | 203 | 5.45e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820730 | G7K310 | 88.491 | 391 | 38 | 2 | 4 | 393 | 1 | 385 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0820730 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0645300 | Msa0820730 | 0.803544 | 3.313687e-49 | -8.615850e-47 |
| Msa0820730 | Msa0896840 | 0.819851 | 9.345734e-53 | -8.615850e-47 |
| Msa0171760 | Msa0820730 | 0.837799 | 4.198759e-57 | -8.615850e-47 |
| Msa0198910 | Msa0820730 | 0.820974 | 5.164322e-53 | -8.615850e-47 |
| Msa0251640 | Msa0820730 | 0.820686 | 6.017735e-53 | -8.615850e-47 |
| Msa0490140 | Msa0820730 | 0.837267 | 5.750657e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820730 | MtrunA17_Chr5g0440751 | 88.718 | 195 | 16 | 1 | 4 | 198 | 1 | 189 | 1.57e-118 | 342 |
| Msa0820730 | MtrunA17_Chr5g0440741 | 86.432 | 199 | 26 | 1 | 196 | 393 | 15 | 213 | 4.68e-114 | 334 |
| Msa0820730 | MtrunA17_Chr5g0440731 | 83.824 | 204 | 27 | 3 | 196 | 393 | 15 | 218 | 5.14e-108 | 319 |
| Msa0820730 | MtrunA17_Chr5g0440821 | 71.491 | 228 | 15 | 4 | 12 | 195 | 23 | 244 | 2.04e-94 | 302 |
| Msa0820730 | MtrunA17_Chr5g0440721 | 79.290 | 169 | 16 | 1 | 8 | 176 | 12 | 161 | 3.60e-87 | 261 |
| Msa0820730 | MtrunA17_Chr5g0409841 | 70.048 | 207 | 47 | 7 | 198 | 393 | 1 | 203 | 3.11e-81 | 249 |
| Msa0820730 | MtrunA17_Chr5g0409831 | 55.376 | 186 | 67 | 4 | 198 | 378 | 1 | 175 | 6.55e-56 | 183 |
| Msa0820730 | MtrunA17_Chr5g0409951 | 61.392 | 158 | 38 | 4 | 6 | 146 | 99 | 250 | 4.13e-47 | 161 |
| Msa0820730 | MtrunA17_Chr5g0409951 | 52.083 | 96 | 33 | 3 | 196 | 285 | 22 | 110 | 1.69e-17 | 81.6 |
| Msa0820730 | MtrunA17_Chr5g0429521 | 56.962 | 79 | 30 | 2 | 282 | 359 | 134 | 209 | 8.97e-22 | 94.7 |
| Msa0820730 | MtrunA17_Chr3g0104071 | 55.422 | 83 | 33 | 2 | 282 | 363 | 149 | 228 | 1.82e-21 | 94.4 |
| Msa0820730 | MtrunA17_Chr7g0241761 | 46.154 | 117 | 49 | 3 | 282 | 396 | 142 | 246 | 2.00e-21 | 94.0 |
| Msa0820730 | MtrunA17_Chr1g0162081 | 56.410 | 78 | 29 | 3 | 278 | 353 | 119 | 193 | 2.38e-21 | 93.6 |
| Msa0820730 | MtrunA17_Chr5g0436501 | 56.962 | 79 | 32 | 2 | 269 | 346 | 113 | 190 | 2.63e-20 | 90.1 |
| Msa0820730 | MtrunA17_Chr1g0210471 | 42.105 | 114 | 50 | 3 | 282 | 394 | 126 | 224 | 1.37e-19 | 87.4 |
| Msa0820730 | MtrunA17_Chr3g0135671 | 48.571 | 70 | 36 | 0 | 282 | 351 | 93 | 162 | 2.95e-19 | 86.3 |
| Msa0820730 | MtrunA17_Chr4g0062741 | 51.899 | 79 | 33 | 3 | 278 | 354 | 135 | 210 | 3.23e-19 | 87.4 |
| Msa0820730 | MtrunA17_Chr2g0331031 | 53.731 | 67 | 28 | 1 | 282 | 348 | 111 | 174 | 1.17e-18 | 86.7 |
| Msa0820730 | MtrunA17_Chr5g0409941 | 41.727 | 139 | 24 | 3 | 1 | 133 | 19 | 106 | 5.55e-18 | 79.0 |
| Msa0820730 | MtrunA17_Chr8g0365011 | 44.660 | 103 | 44 | 2 | 262 | 352 | 74 | 175 | 6.66e-18 | 83.2 |
| Msa0820730 | MtrunA17_Chr4g0055931 | 36.290 | 124 | 66 | 4 | 241 | 354 | 47 | 167 | 2.46e-17 | 82.4 |
| Msa0820730 | MtrunA17_Chr8g0364731 | 53.731 | 67 | 30 | 1 | 289 | 355 | 10 | 75 | 3.10e-17 | 79.3 |
| Msa0820730 | MtrunA17_Chr6g0488471 | 53.846 | 65 | 27 | 1 | 282 | 346 | 99 | 160 | 8.23e-17 | 80.1 |
| Msa0820730 | MtrunA17_Chr8g0389241 | 52.308 | 65 | 27 | 1 | 282 | 346 | 107 | 167 | 9.10e-17 | 80.1 |
| Msa0820730 | MtrunA17_Chr5g0432921 | 37.615 | 109 | 57 | 2 | 254 | 352 | 77 | 184 | 1.98e-16 | 77.8 |
| Msa0820730 | MtrunA17_Chr4g0059701 | 33.333 | 126 | 70 | 2 | 201 | 326 | 19 | 130 | 1.23e-15 | 76.6 |
| Msa0820730 | MtrunA17_Chr5g0415191 | 65.217 | 46 | 16 | 0 | 282 | 327 | 104 | 149 | 1.36e-15 | 77.0 |
| Msa0820730 | MtrunA17_Chr6g0452791 | 52.632 | 57 | 27 | 0 | 282 | 338 | 82 | 138 | 3.61e-15 | 73.2 |
| Msa0820730 | MtrunA17_Chr5g0432941 | 37.037 | 108 | 58 | 2 | 254 | 352 | 78 | 184 | 9.27e-15 | 73.2 |
| Msa0820730 | MtrunA17_Chr3g0092621 | 42.857 | 70 | 37 | 1 | 282 | 351 | 86 | 152 | 2.09e-14 | 70.9 |
| Msa0820730 | MtrunA17_Chr3g0113121 | 50.000 | 72 | 28 | 2 | 281 | 346 | 96 | 165 | 1.81e-13 | 69.3 |
| Msa0820730 | MtrunA17_Chr1g0192061 | 34.646 | 127 | 75 | 4 | 229 | 352 | 12 | 133 | 1.25e-12 | 66.2 |
| Msa0820730 | MtrunA17_Chr8g0370121 | 41.270 | 63 | 37 | 0 | 282 | 344 | 102 | 164 | 7.74e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820730 | AT5G58900.1 | 48.454 | 97 | 39 | 2 | 282 | 378 | 143 | 228 | 2.92e-22 | 96.3 |
| Msa0820730 | AT5G08520.1 | 54.321 | 81 | 33 | 2 | 278 | 357 | 115 | 192 | 4.24e-21 | 93.2 |
| Msa0820730 | AT5G01200.1 | 61.538 | 65 | 22 | 1 | 282 | 346 | 148 | 209 | 2.34e-20 | 90.5 |
| Msa0820730 | AT5G04760.1 | 55.405 | 74 | 30 | 1 | 273 | 346 | 92 | 162 | 5.87e-20 | 88.2 |
| Msa0820730 | AT2G38090.1 | 57.534 | 73 | 27 | 2 | 275 | 346 | 135 | 204 | 1.24e-19 | 89.0 |
| Msa0820730 | AT5G61620.1 | 42.857 | 126 | 52 | 5 | 274 | 391 | 101 | 214 | 7.30e-19 | 87.0 |
| Msa0820730 | AT1G49010.1 | 51.220 | 82 | 35 | 3 | 278 | 357 | 131 | 209 | 9.10e-19 | 86.7 |
| Msa0820730 | AT3G11280.2 | 42.742 | 124 | 52 | 5 | 282 | 394 | 129 | 244 | 2.56e-18 | 84.3 |
| Msa0820730 | AT3G11280.1 | 42.742 | 124 | 52 | 5 | 282 | 394 | 129 | 244 | 2.56e-18 | 84.3 |
| Msa0820730 | AT3G10580.2 | 35.404 | 161 | 85 | 6 | 236 | 392 | 57 | 202 | 3.93e-18 | 84.0 |
| Msa0820730 | AT3G10580.1 | 38.806 | 134 | 64 | 5 | 269 | 392 | 77 | 202 | 6.31e-18 | 84.0 |
| Msa0820730 | AT5G47390.1 | 44.828 | 87 | 44 | 2 | 282 | 367 | 98 | 181 | 1.50e-17 | 84.0 |
| Msa0820730 | AT5G23650.1 | 48.684 | 76 | 36 | 1 | 282 | 357 | 122 | 194 | 9.66e-17 | 81.3 |
| Msa0820730 | AT5G05790.2 | 53.750 | 80 | 29 | 3 | 278 | 352 | 128 | 204 | 1.38e-16 | 79.7 |
| Msa0820730 | AT5G05790.1 | 53.750 | 80 | 29 | 3 | 278 | 352 | 128 | 204 | 1.38e-16 | 79.7 |
| Msa0820730 | AT5G56840.1 | 52.308 | 65 | 29 | 1 | 282 | 346 | 93 | 155 | 2.43e-16 | 78.2 |
| Msa0820730 | AT1G70000.1 | 65.217 | 46 | 16 | 0 | 282 | 327 | 100 | 145 | 5.75e-16 | 77.8 |
| Msa0820730 | AT1G70000.2 | 65.217 | 46 | 16 | 0 | 282 | 327 | 100 | 145 | 5.75e-16 | 77.8 |
| Msa0820730 | AT3G16350.1 | 63.043 | 46 | 17 | 0 | 282 | 327 | 139 | 184 | 2.81e-15 | 77.4 |
| Msa0820730 | AT1G74840.2 | 66.667 | 45 | 15 | 0 | 282 | 326 | 98 | 142 | 5.52e-15 | 74.3 |
| Msa0820730 | AT1G74840.1 | 66.667 | 45 | 15 | 0 | 282 | 326 | 98 | 142 | 7.68e-15 | 74.3 |
| Msa0820730 | AT1G19000.2 | 66.667 | 45 | 15 | 0 | 282 | 326 | 104 | 148 | 1.18e-14 | 74.3 |
| Msa0820730 | AT1G19000.1 | 66.667 | 45 | 15 | 0 | 282 | 326 | 104 | 148 | 1.18e-14 | 74.3 |
| Msa0820730 | AT4G09450.1 | 50.000 | 68 | 31 | 1 | 282 | 349 | 93 | 157 | 1.30e-14 | 72.4 |
| Msa0820730 | AT3G10590.1 | 48.529 | 68 | 31 | 2 | 282 | 349 | 113 | 176 | 2.10e-12 | 66.2 |
Find 98 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTGTCATTCTTGTTTA+AGG | 0.120168 | 5_3:-58258411 | None:intergenic |
| TCACCTTGTTCTTGGATATT+TGG | 0.151843 | 5_3:-58257060 | None:intergenic |
| TCAACATGATTCATAGGTTT+TGG | 0.219569 | 5_3:-58256329 | None:intergenic |
| CTGTCCAATGCCCTTTCCTT+GGG | 0.241717 | 5_3:-58257985 | None:intergenic |
| CCTGCTGCTGCCGGGGATAC+AGG | 0.250754 | 5_3:-58256934 | None:intergenic |
| CTTGGGGCATGACTTTCTTC+TGG | 0.281577 | 5_3:-58257968 | None:intergenic |
| TCACATGGTCACCTTGTTCT+TGG | 0.300281 | 5_3:-58257068 | None:intergenic |
| TCTGTCCAATGCCCTTTCCT+TGG | 0.314383 | 5_3:-58257986 | None:intergenic |
| TGGATATTTGGCCTTCCATT+TGG | 0.317326 | 5_3:-58257048 | None:intergenic |
| TCTCGATATCTTTCACATCT+TGG | 0.324400 | 5_3:-58258352 | None:intergenic |
| TATTTGAAGAAAAGTAATTA+TGG | 0.325126 | 5_3:+58256196 | None:intergenic |
| CACCGGAGGCTGAACATGTT+TGG | 0.362724 | 5_3:-58256992 | None:intergenic |
| ACATTCTCAACATGATTCAT+AGG | 0.366509 | 5_3:-58256335 | None:intergenic |
| GATGTTCCTGTGTTGGTTGT+TGG | 0.372353 | 5_3:+58256269 | Msa0820730:CDS |
| AAACAGAAATCAAACGGTTC+TGG | 0.380690 | 5_3:+58256778 | Msa0820730:intron |
| TTTCTGTTGCGCTTGGGGCC+TGG | 0.382290 | 5_3:-58256847 | None:intergenic |
| GCTCATTTAAATCAACTTGA+TGG | 0.390024 | 5_3:-58257781 | None:intergenic |
| AGCTATGCTCAGAGGGATCT+TGG | 0.398076 | 5_3:-58257814 | None:intergenic |
| AACCTTGTCCTGCTGCTGCC+GGG | 0.402092 | 5_3:-58256942 | None:intergenic |
| TTCTGTGCCTAGTGTTGGTC+AGG | 0.402578 | 5_3:+58256358 | Msa0820730:CDS |
| TTTGTGTTTCTGTTGCGCTT+GGG | 0.412088 | 5_3:-58256853 | None:intergenic |
| CTGAACATGTTTGGCATCAA+TGG | 0.415429 | 5_3:-58256983 | None:intergenic |
| GAACAACAACAGGAGAAAAC+TGG | 0.423114 | 5_3:+58257839 | Msa0820730:CDS |
| AAATATTTCAAAAGAATTTG+TGG | 0.425853 | 5_3:+58258277 | Msa0820730:CDS |
| ATTTGTGTTTCTGTTGCGCT+TGG | 0.430827 | 5_3:-58256854 | None:intergenic |
| GGATTCTCGCCATTAGGATA+AGG | 0.435944 | 5_3:-58256907 | None:intergenic |
| TATGCTGTTAATTATCCAAA+TGG | 0.436533 | 5_3:+58257033 | Msa0820730:CDS |
| GGCTTAGGATTCTCGCCATT+AGG | 0.439906 | 5_3:-58256913 | None:intergenic |
| GGTGATGGCATCTTATTCTT+CGG | 0.445274 | 5_3:-58256811 | None:intergenic |
| AAACCTTGTCCTGCTGCTGC+CGG | 0.447814 | 5_3:-58256943 | None:intergenic |
| CGATATCTTTCACATCTTGG+TGG | 0.460935 | 5_3:-58258349 | None:intergenic |
| ATGTTTGCCCTGGCAGGAAA+AGG | 0.462283 | 5_3:-58257114 | None:intergenic |
| GCGACGATGCCTTATCCTAA+TGG | 0.462440 | 5_3:+58256898 | Msa0820730:CDS |
| GCATAGCTTGGAACAACAAC+AGG | 0.463123 | 5_3:+58257829 | Msa0820730:CDS |
| CCTGTATCCCCGGCAGCAGC+AGG | 0.464792 | 5_3:+58256934 | Msa0820730:CDS |
| GGCTTTCGATAGCGCGGTGA+TGG | 0.464836 | 5_3:-58256826 | None:intergenic |
| TTGTGTTTCTGTTGCGCTTG+GGG | 0.482706 | 5_3:-58256852 | None:intergenic |
| TCACCGCGCTATCGAAAGCC+AGG | 0.491564 | 5_3:+58256829 | Msa0820730:CDS |
| AGAAAGAGCCGGCGAAGACT+TGG | 0.492169 | 5_3:-58256294 | None:intergenic |
| AGCTGAACAGAAGGAGCTAT+AGG | 0.492258 | 5_3:-58256386 | None:intergenic |
| GCTGCCGGGGATACAGGCTT+AGG | 0.492601 | 5_3:-58256928 | None:intergenic |
| AAAGTCATGCCCCAAGGAAA+GGG | 0.493395 | 5_3:+58257975 | Msa0820730:CDS |
| ATAGGCATGTTTGCCCTGGC+AGG | 0.493753 | 5_3:-58257120 | None:intergenic |
| GGCATCGATATCATTGAGTC+AGG | 0.499711 | 5_3:+58257860 | Msa0820730:CDS |
| GAATCCTAAGCCTGTATCCC+CGG | 0.504373 | 5_3:+58256924 | Msa0820730:CDS |
| AGATCCCTCTGAGCATAGCT+TGG | 0.509851 | 5_3:+58257817 | Msa0820730:CDS |
| TGCCAAACATGTTCAGCCTC+CGG | 0.511829 | 5_3:+58256990 | Msa0820730:CDS |
| TCAAGTTGATTTAAATGAGC+CGG | 0.513363 | 5_3:+58257784 | Msa0820730:CDS |
| TAATTAACAGCATAAGCATT+CGG | 0.516489 | 5_3:-58257024 | None:intergenic |
| ATGCCCCAAGGAAAGGGCAT+TGG | 0.524782 | 5_3:+58257981 | Msa0820730:CDS |
| GAAAGTCATGCCCCAAGGAA+AGG | 0.527463 | 5_3:+58257974 | Msa0820730:CDS |
| GTGATTAAACAGAAATCAAA+CGG | 0.527832 | 5_3:+58256772 | Msa0820730:intron |
| GTAATTATGGTGAGGATCAG+AGG | 0.529504 | 5_3:+58256209 | Msa0820730:CDS |
| TTGCATAGGCATGTTTGCCC+TGG | 0.530471 | 5_3:-58257124 | None:intergenic |
| CAAGGTGACCATGTGAATCA+TGG | 0.533701 | 5_3:+58257075 | Msa0820730:CDS |
| TGTTGGAACCAAGTCTTCGC+CGG | 0.542383 | 5_3:+58256286 | Msa0820730:CDS |
| TGTCCAATGCCCTTTCCTTG+GGG | 0.549581 | 5_3:-58257984 | None:intergenic |
| AATGTTTCTGTGCCTAGTGT+TGG | 0.550067 | 5_3:+58256353 | Msa0820730:CDS |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5_3:-58258494 | None:intergenic |
| AATATACAACCTCATTGTCC+TGG | 0.552591 | 5_3:-58258548 | None:intergenic |
| CAACCTCATTGTCCTGGCAT+AGG | 0.553497 | 5_3:-58258542 | None:intergenic |
| GCATGGCTAGCAATTTGAGC+TGG | 0.553651 | 5_3:-58258311 | None:intergenic |
| GGATAAGGCATCGTCGCCAC+AGG | 0.553867 | 5_3:-58256892 | None:intergenic |
| TTCGGATCTCCTTGCACCGG+AGG | 0.558249 | 5_3:-58257006 | None:intergenic |
| TGTTCCAAGCTATGCTCAGA+GGG | 0.559700 | 5_3:-58257821 | None:intergenic |
| CATGTTCAGCCTCCGGTGCA+AGG | 0.562364 | 5_3:+58256997 | Msa0820730:CDS |
| CATTTAAATCAACTTGATGG+AGG | 0.562928 | 5_3:-58257778 | None:intergenic |
| ACCTTGTCCTGCTGCTGCCG+GGG | 0.566255 | 5_3:-58256941 | None:intergenic |
| GAGGGATCTTGGACTGAAGC+CGG | 0.570243 | 5_3:-58257803 | None:intergenic |
| AACAATCGAAGCTGAACAGA+AGG | 0.570539 | 5_3:-58256395 | None:intergenic |
| TCCCCGGCAGCAGCAGGACA+AGG | 0.572616 | 5_3:+58256940 | Msa0820730:CDS |
| AATGAGATTTCTCCTATGCC+AGG | 0.574078 | 5_3:+58258530 | Msa0820730:CDS |
| ATTTAAATCAACTTGATGGA+GGG | 0.576152 | 5_3:-58257777 | None:intergenic |
| TTTGGTATAGAAAGCATGGA+AGG | 0.576489 | 5_3:+58257734 | Msa0820730:intron |
| AAGTGTTGATGTTCCTGTGT+TGG | 0.580284 | 5_3:+58256262 | Msa0820730:CDS |
| GAAGAAAAGTAATTATGGTG+AGG | 0.586984 | 5_3:+58256201 | None:intergenic |
| ACACTTTGTAGCTCAACTGA+AGG | 0.589388 | 5_3:-58258467 | None:intergenic |
| GTTTGAGCATCAGAAAGAGC+CGG | 0.593248 | 5_3:-58256305 | None:intergenic |
| CTGTTAATTATCCAAATGGA+AGG | 0.601168 | 5_3:+58257037 | Msa0820730:CDS |
| GCATCAATGGCATGAGCAGG+TGG | 0.609092 | 5_3:-58256970 | None:intergenic |
| GGAGCAACCTGACCAACACT+AGG | 0.611273 | 5_3:-58256365 | None:intergenic |
| GCATTCGGATCTCCTTGCAC+CGG | 0.618195 | 5_3:-58257009 | None:intergenic |
| CAAAGTGTGATTCCTCCTCA+AGG | 0.618896 | 5_3:+58258482 | Msa0820730:CDS |
| ATCGTCGCCACAGGAAAGTG+AGG | 0.619216 | 5_3:-58256883 | None:intergenic |
| CTTAAACAAGAATGACACAT+TGG | 0.620075 | 5_3:+58258412 | Msa0820730:CDS |
| TTGGCATCAATGGCATGAGC+AGG | 0.623729 | 5_3:-58256973 | None:intergenic |
| CAGAAGAAAGTCATGCCCCA+AGG | 0.636413 | 5_3:+58257969 | Msa0820730:CDS |
| TCTCCTATGCCAGGACAATG+AGG | 0.638878 | 5_3:+58258539 | Msa0820730:CDS |
| TTGTTCCAAGCTATGCTCAG+AGG | 0.642227 | 5_3:-58257822 | None:intergenic |
| GTGACCATGTGAATCATGGT+CGG | 0.644274 | 5_3:+58257079 | Msa0820730:CDS |
| AGGCCAAATATCCAAGAACA+AGG | 0.648452 | 5_3:+58257057 | Msa0820730:CDS |
| GGGCCTGGCTTTCGATAGCG+CGG | 0.653594 | 5_3:-58256832 | None:intergenic |
| ATTATGGTGAGGATCAGAGG+AGG | 0.653905 | 5_3:+58256212 | Msa0820730:CDS |
| GGATCAGAGGAGGAAAGCAG+AGG | 0.659593 | 5_3:+58256222 | Msa0820730:CDS |
| TTGGTTCCAACAACCAACAC+AGG | 0.665985 | 5_3:-58256275 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5_3:-58258497 | None:intergenic |
| TGACACGCCTCACTTTCCTG+TGG | 0.696402 | 5_3:+58256876 | Msa0820730:CDS |
| GATGCCGACCATGATTCACA+TGG | 0.766610 | 5_3:-58257083 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_3:58257539-58257558 | Msa0820730:intron | 15.0% |
| !!! | TTTTCTTATAGTTGTATTTT+TGG | + | chr5_3:58257716-58257735 | Msa0820730:intron | 15.0% |
| !! | AAATATTTCAAAAGAATTTG+TGG | + | chr5_3:58258277-58258296 | Msa0820730:CDS | 15.0% |
| !!! | ATTTTGTTAACTTACATAAT+TGG | + | chr5_3:58257539-58257558 | Msa0820730:intron | 15.0% |
| !!! | TTTTCTTATAGTTGTATTTT+TGG | + | chr5_3:58257716-58257735 | Msa0820730:intron | 15.0% |
| !! | AAATATTTCAAAAGAATTTG+TGG | + | chr5_3:58258277-58258296 | Msa0820730:CDS | 15.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_3:58257535-58257554 | None:intergenic | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_3:58257681-58257700 | None:intergenic | 20.0% |
| !! | AAAAAATAACTTTCAAACGT+AGG | - | chr5_3:58258046-58258065 | None:intergenic | 20.0% |
| !!! | TATATATAGGTTGTTTTTGA+AGG | + | chr5_3:58258223-58258242 | Msa0820730:intron | 20.0% |
| !!! | ATATATAGGTTGTTTTTGAA+GGG | + | chr5_3:58258224-58258243 | Msa0820730:intron | 20.0% |
| !! | TGTAAGTTAACAAAATTACT+TGG | - | chr5_3:58257535-58257554 | None:intergenic | 20.0% |
| !!! | CATGCATAATATTTTTTGAA+TGG | - | chr5_3:58257681-58257700 | None:intergenic | 20.0% |
| !! | AAAAAATAACTTTCAAACGT+AGG | - | chr5_3:58258046-58258065 | None:intergenic | 20.0% |
| !!! | TATATATAGGTTGTTTTTGA+AGG | + | chr5_3:58258223-58258242 | Msa0820730:intron | 20.0% |
| !!! | ATATATAGGTTGTTTTTGAA+GGG | + | chr5_3:58258224-58258243 | Msa0820730:intron | 20.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_3:58256554-58256573 | None:intergenic | 25.0% |
| ! | TAAACAACGAGTGAAAAATA+TGG | + | chr5_3:58256617-58256636 | Msa0820730:intron | 25.0% |
| !!! | TTCTAGAATATTCTTAACTC+TGG | + | chr5_3:58256703-58256722 | Msa0820730:intron | 25.0% |
| !! | TCTAGAATATTCTTAACTCT+GGG | + | chr5_3:58256704-58256723 | Msa0820730:intron | 25.0% |
| ! | GTGATTAAACAGAAATCAAA+CGG | + | chr5_3:58256772-58256791 | Msa0820730:intron | 25.0% |
| ! | TAATTAACAGCATAAGCATT+CGG | - | chr5_3:58257027-58257046 | None:intergenic | 25.0% |
| ! | TATGCTGTTAATTATCCAAA+TGG | + | chr5_3:58257033-58257052 | Msa0820730:CDS | 25.0% |
| ! | TGTTAAGCTAAATGAATAAG+TGG | - | chr5_3:58257203-58257222 | None:intergenic | 25.0% |
| ! | ATTATGATATCTTCTCGTTA+TGG | + | chr5_3:58257484-58257503 | Msa0820730:intron | 25.0% |
| ! | AAGAATTAAGATGATTTAGC+TGG | + | chr5_3:58257638-58257657 | Msa0820730:intron | 25.0% |
| !!! | TATTTTTGGTATAGAAAGCA+TGG | + | chr5_3:58257730-58257749 | Msa0820730:intron | 25.0% |
| ! | ATTTAAATCAACTTGATGGA+GGG | - | chr5_3:58257780-58257799 | None:intergenic | 25.0% |
| ! | CACATTCATTCTCTATATAT+AGG | + | chr5_3:58258210-58258229 | Msa0820730:intron | 25.0% |
| !!! | TATATAGGTTGTTTTTGAAG+GGG | + | chr5_3:58258225-58258244 | Msa0820730:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_3:58258336-58258355 | None:intergenic | 25.0% |
| ! | TTCTTATGCTTGCAATAATA+TGG | - | chr5_3:58256554-58256573 | None:intergenic | 25.0% |
| ! | TAAACAACGAGTGAAAAATA+TGG | + | chr5_3:58256617-58256636 | Msa0820730:intron | 25.0% |
| !!! | TTCTAGAATATTCTTAACTC+TGG | + | chr5_3:58256703-58256722 | Msa0820730:intron | 25.0% |
| !! | TCTAGAATATTCTTAACTCT+GGG | + | chr5_3:58256704-58256723 | Msa0820730:intron | 25.0% |
| ! | GTGATTAAACAGAAATCAAA+CGG | + | chr5_3:58256772-58256791 | Msa0820730:intron | 25.0% |
| ! | TAATTAACAGCATAAGCATT+CGG | - | chr5_3:58257027-58257046 | None:intergenic | 25.0% |
| ! | TATGCTGTTAATTATCCAAA+TGG | + | chr5_3:58257033-58257052 | Msa0820730:CDS | 25.0% |
| ! | TGTTAAGCTAAATGAATAAG+TGG | - | chr5_3:58257203-58257222 | None:intergenic | 25.0% |
| ! | ATTATGATATCTTCTCGTTA+TGG | + | chr5_3:58257484-58257503 | Msa0820730:intron | 25.0% |
| ! | AAGAATTAAGATGATTTAGC+TGG | + | chr5_3:58257638-58257657 | Msa0820730:intron | 25.0% |
| !!! | TATTTTTGGTATAGAAAGCA+TGG | + | chr5_3:58257730-58257749 | Msa0820730:intron | 25.0% |
| ! | ATTTAAATCAACTTGATGGA+GGG | - | chr5_3:58257780-58257799 | None:intergenic | 25.0% |
| ! | CACATTCATTCTCTATATAT+AGG | + | chr5_3:58258210-58258229 | Msa0820730:intron | 25.0% |
| !!! | TATATAGGTTGTTTTTGAAG+GGG | + | chr5_3:58258225-58258244 | Msa0820730:intron | 25.0% |
| !!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5_3:58258336-58258355 | None:intergenic | 25.0% |
| ! | TCAACATGATTCATAGGTTT+TGG | - | chr5_3:58256332-58256351 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCAT+AGG | - | chr5_3:58256338-58256357 | None:intergenic | 30.0% | |
| AAGATCATGTTAGTGTAATG+TGG | + | chr5_3:58256463-58256482 | Msa0820730:intron | 30.0% | |
| !!! | TTAGTGTAATGTGGTTTTGA+TGG | + | chr5_3:58256472-58256491 | Msa0820730:intron | 30.0% |
| !!! | ATTGTTTTTTTTCCCTTCGA+TGG | + | chr5_3:58256666-58256685 | Msa0820730:intron | 30.0% |
| TTTAATCACAGATCCATACA+CGG | - | chr5_3:58256761-58256780 | None:intergenic | 30.0% | |
| CTGTTAATTATCCAAATGGA+AGG | + | chr5_3:58257037-58257056 | Msa0820730:CDS | 30.0% | |
| ! | GAAATTTTACTGTGTTGCAT+AGG | - | chr5_3:58257141-58257160 | None:intergenic | 30.0% |
| AATTGCATGAAGTGCATATA+TGG | - | chr5_3:58257178-58257197 | None:intergenic | 30.0% | |
| ACTCAATGAAGTTCATTCAA+AGG | - | chr5_3:58257243-58257262 | None:intergenic | 30.0% | |
| TTACTTTGATACCATTGAAG+TGG | + | chr5_3:58257415-58257434 | Msa0820730:intron | 30.0% | |
| CATTTAAATCAACTTGATGG+AGG | - | chr5_3:58257781-58257800 | None:intergenic | 30.0% | |
| GCTCATTTAAATCAACTTGA+TGG | - | chr5_3:58257784-58257803 | None:intergenic | 30.0% | |
| !! | TCAAGTTGATTTAAATGAGC+CGG | + | chr5_3:58257784-58257803 | Msa0820730:CDS | 30.0% |
| !! | CTTGGTGGATAAAGTATTTT+TGG | - | chr5_3:58258337-58258356 | None:intergenic | 30.0% |
| ! | CAATGTGTCATTCTTGTTTA+AGG | - | chr5_3:58258414-58258433 | None:intergenic | 30.0% |
| CTTAAACAAGAATGACACAT+TGG | + | chr5_3:58258412-58258431 | Msa0820730:CDS | 30.0% | |
| ! | TCAACATGATTCATAGGTTT+TGG | - | chr5_3:58256332-58256351 | None:intergenic | 30.0% |
| ACATTCTCAACATGATTCAT+AGG | - | chr5_3:58256338-58256357 | None:intergenic | 30.0% | |
| AAGATCATGTTAGTGTAATG+TGG | + | chr5_3:58256463-58256482 | Msa0820730:intron | 30.0% | |
| !!! | TTAGTGTAATGTGGTTTTGA+TGG | + | chr5_3:58256472-58256491 | Msa0820730:intron | 30.0% |
| !!! | ATTGTTTTTTTTCCCTTCGA+TGG | + | chr5_3:58256666-58256685 | Msa0820730:intron | 30.0% |
| TTTAATCACAGATCCATACA+CGG | - | chr5_3:58256761-58256780 | None:intergenic | 30.0% | |
| CTGTTAATTATCCAAATGGA+AGG | + | chr5_3:58257037-58257056 | Msa0820730:CDS | 30.0% | |
| ! | GAAATTTTACTGTGTTGCAT+AGG | - | chr5_3:58257141-58257160 | None:intergenic | 30.0% |
| AATTGCATGAAGTGCATATA+TGG | - | chr5_3:58257178-58257197 | None:intergenic | 30.0% | |
| ACTCAATGAAGTTCATTCAA+AGG | - | chr5_3:58257243-58257262 | None:intergenic | 30.0% | |
| TTACTTTGATACCATTGAAG+TGG | + | chr5_3:58257415-58257434 | Msa0820730:intron | 30.0% | |
| CATTTAAATCAACTTGATGG+AGG | - | chr5_3:58257781-58257800 | None:intergenic | 30.0% | |
| GCTCATTTAAATCAACTTGA+TGG | - | chr5_3:58257784-58257803 | None:intergenic | 30.0% | |
| !! | TCAAGTTGATTTAAATGAGC+CGG | + | chr5_3:58257784-58257803 | Msa0820730:CDS | 30.0% |
| !! | CTTGGTGGATAAAGTATTTT+TGG | - | chr5_3:58258337-58258356 | None:intergenic | 30.0% |
| ! | CAATGTGTCATTCTTGTTTA+AGG | - | chr5_3:58258414-58258433 | None:intergenic | 30.0% |
| CTTAAACAAGAATGACACAT+TGG | + | chr5_3:58258412-58258431 | Msa0820730:CDS | 30.0% | |
| !! | CAGCTTTTATTTCCATCGAA+GGG | - | chr5_3:58256681-58256700 | None:intergenic | 35.0% |
| !! | ACAGCTTTTATTTCCATCGA+AGG | - | chr5_3:58256682-58256701 | None:intergenic | 35.0% |
| AAACAGAAATCAAACGGTTC+TGG | + | chr5_3:58256778-58256797 | Msa0820730:intron | 35.0% | |
| TCACCTTGTTCTTGGATATT+TGG | - | chr5_3:58257063-58257082 | None:intergenic | 35.0% | |
| ! | TCTCGTTATGGTTCTGTAAT+TGG | + | chr5_3:58257496-58257515 | Msa0820730:intron | 35.0% |
| !! | CTGTAATTGGTTTGAGTAAC+TGG | + | chr5_3:58257509-58257528 | Msa0820730:intron | 35.0% |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_3:58257558-58257577 | Msa0820730:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+AGG | + | chr5_3:58257601-58257620 | Msa0820730:intron | 35.0% |
| !!! | TTTTTTGAGTAAACCAGGTG+AGG | + | chr5_3:58257606-58257625 | Msa0820730:intron | 35.0% |
| ! | TTTGGTATAGAAAGCATGGA+AGG | + | chr5_3:58257734-58257753 | Msa0820730:intron | 35.0% |
| TTGAAGGGGATGAAAAAACA+TGG | + | chr5_3:58258239-58258258 | Msa0820730:CDS | 35.0% | |
| GGGATGAAAAAACATGGAAA+GGG | + | chr5_3:58258245-58258264 | Msa0820730:CDS | 35.0% | |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_3:58258331-58258350 | None:intergenic | 35.0% |
| TCTCGATATCTTTCACATCT+TGG | - | chr5_3:58258355-58258374 | None:intergenic | 35.0% | |
| !! | CAGCTTTTATTTCCATCGAA+GGG | - | chr5_3:58256681-58256700 | None:intergenic | 35.0% |
| !! | ACAGCTTTTATTTCCATCGA+AGG | - | chr5_3:58256682-58256701 | None:intergenic | 35.0% |
| AAACAGAAATCAAACGGTTC+TGG | + | chr5_3:58256778-58256797 | Msa0820730:intron | 35.0% | |
| TCACCTTGTTCTTGGATATT+TGG | - | chr5_3:58257063-58257082 | None:intergenic | 35.0% | |
| ! | TCTCGTTATGGTTCTGTAAT+TGG | + | chr5_3:58257496-58257515 | Msa0820730:intron | 35.0% |
| !! | CTGTAATTGGTTTGAGTAAC+TGG | + | chr5_3:58257509-58257528 | Msa0820730:intron | 35.0% |
| ! | TTGGCTAGTTCATCTGATTA+AGG | + | chr5_3:58257558-58257577 | Msa0820730:intron | 35.0% |
| !!! | CATCGTTTTTTGAGTAAACC+AGG | + | chr5_3:58257601-58257620 | Msa0820730:intron | 35.0% |
| !!! | TTTTTTGAGTAAACCAGGTG+AGG | + | chr5_3:58257606-58257625 | Msa0820730:intron | 35.0% |
| ! | TTTGGTATAGAAAGCATGGA+AGG | + | chr5_3:58257734-58257753 | Msa0820730:intron | 35.0% |
| TTGAAGGGGATGAAAAAACA+TGG | + | chr5_3:58258239-58258258 | Msa0820730:CDS | 35.0% | |
| GGGATGAAAAAACATGGAAA+GGG | + | chr5_3:58258245-58258264 | Msa0820730:CDS | 35.0% | |
| !!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5_3:58258331-58258350 | None:intergenic | 35.0% |
| TCTCGATATCTTTCACATCT+TGG | - | chr5_3:58258355-58258374 | None:intergenic | 35.0% | |
| GTAATTATGGTGAGGATCAG+AGG | + | chr5_3:58256209-58256228 | Msa0820730:CDS | 40.0% | |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_3:58256262-58256281 | Msa0820730:CDS | 40.0% |
| ! | AATGTTTCTGTGCCTAGTGT+TGG | + | chr5_3:58256353-58256372 | Msa0820730:CDS | 40.0% |
| AACAATCGAAGCTGAACAGA+AGG | - | chr5_3:58256398-58256417 | None:intergenic | 40.0% | |
| ! | TTTGCCTGATTTTCCGTGTA+TGG | + | chr5_3:58256745-58256764 | Msa0820730:intron | 40.0% |
| AGATCCATACACGGAAAATC+AGG | - | chr5_3:58256752-58256771 | None:intergenic | 40.0% | |
| ! | GGTGATGGCATCTTATTCTT+CGG | - | chr5_3:58256814-58256833 | None:intergenic | 40.0% |
| ! | TTTGTGTTTCTGTTGCGCTT+GGG | - | chr5_3:58256856-58256875 | None:intergenic | 40.0% |
| ! | ATTTGTGTTTCTGTTGCGCT+TGG | - | chr5_3:58256857-58256876 | None:intergenic | 40.0% |
| CTGAACATGTTTGGCATCAA+TGG | - | chr5_3:58256986-58257005 | None:intergenic | 40.0% | |
| ! | TGGATATTTGGCCTTCCATT+TGG | - | chr5_3:58257051-58257070 | None:intergenic | 40.0% |
| AGGCCAAATATCCAAGAACA+AGG | + | chr5_3:58257057-58257076 | Msa0820730:CDS | 40.0% | |
| TGCATGAAGTGCATATATGG+AGG | - | chr5_3:58257175-58257194 | None:intergenic | 40.0% | |
| !! | AAGATTCTAGCTTAACCCTC+TGG | + | chr5_3:58257333-58257352 | Msa0820730:intron | 40.0% |
| !!! | TTAACCCTCTGGTGCTTTTT+TGG | + | chr5_3:58257344-58257363 | Msa0820730:intron | 40.0% |
| !!! | TAACCCTCTGGTGCTTTTTT+GGG | + | chr5_3:58257345-58257364 | Msa0820730:intron | 40.0% |
| !! | ATACCCAAAAAAGCACCAGA+GGG | - | chr5_3:58257351-58257370 | None:intergenic | 40.0% |
| !! | AATACCCAAAAAAGCACCAG+AGG | - | chr5_3:58257352-58257371 | None:intergenic | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_3:58257429-58257448 | None:intergenic | 40.0% | |
| GAACAACAACAGGAGAAAAC+TGG | + | chr5_3:58257839-58257858 | Msa0820730:CDS | 40.0% | |
| GGGGATGAAAAAACATGGAA+AGG | + | chr5_3:58258244-58258263 | Msa0820730:CDS | 40.0% | |
| CGATATCTTTCACATCTTGG+TGG | - | chr5_3:58258352-58258371 | None:intergenic | 40.0% | |
| ACACTTTGTAGCTCAACTGA+AGG | - | chr5_3:58258470-58258489 | None:intergenic | 40.0% | |
| AATGAGATTTCTCCTATGCC+AGG | + | chr5_3:58258530-58258549 | Msa0820730:CDS | 40.0% | |
| GTAATTATGGTGAGGATCAG+AGG | + | chr5_3:58256209-58256228 | Msa0820730:CDS | 40.0% | |
| !! | AAGTGTTGATGTTCCTGTGT+TGG | + | chr5_3:58256262-58256281 | Msa0820730:CDS | 40.0% |
| ! | AATGTTTCTGTGCCTAGTGT+TGG | + | chr5_3:58256353-58256372 | Msa0820730:CDS | 40.0% |
| AACAATCGAAGCTGAACAGA+AGG | - | chr5_3:58256398-58256417 | None:intergenic | 40.0% | |
| ! | TTTGCCTGATTTTCCGTGTA+TGG | + | chr5_3:58256745-58256764 | Msa0820730:intron | 40.0% |
| AGATCCATACACGGAAAATC+AGG | - | chr5_3:58256752-58256771 | None:intergenic | 40.0% | |
| ! | GGTGATGGCATCTTATTCTT+CGG | - | chr5_3:58256814-58256833 | None:intergenic | 40.0% |
| ! | TTTGTGTTTCTGTTGCGCTT+GGG | - | chr5_3:58256856-58256875 | None:intergenic | 40.0% |
| ! | ATTTGTGTTTCTGTTGCGCT+TGG | - | chr5_3:58256857-58256876 | None:intergenic | 40.0% |
| CTGAACATGTTTGGCATCAA+TGG | - | chr5_3:58256986-58257005 | None:intergenic | 40.0% | |
| ! | TGGATATTTGGCCTTCCATT+TGG | - | chr5_3:58257051-58257070 | None:intergenic | 40.0% |
| AGGCCAAATATCCAAGAACA+AGG | + | chr5_3:58257057-58257076 | Msa0820730:CDS | 40.0% | |
| TGCATGAAGTGCATATATGG+AGG | - | chr5_3:58257175-58257194 | None:intergenic | 40.0% | |
| !! | AAGATTCTAGCTTAACCCTC+TGG | + | chr5_3:58257333-58257352 | Msa0820730:intron | 40.0% |
| !!! | TTAACCCTCTGGTGCTTTTT+TGG | + | chr5_3:58257344-58257363 | Msa0820730:intron | 40.0% |
| !!! | TAACCCTCTGGTGCTTTTTT+GGG | + | chr5_3:58257345-58257364 | Msa0820730:intron | 40.0% |
| !! | ATACCCAAAAAAGCACCAGA+GGG | - | chr5_3:58257351-58257370 | None:intergenic | 40.0% |
| !! | AATACCCAAAAAAGCACCAG+AGG | - | chr5_3:58257352-58257371 | None:intergenic | 40.0% |
| GCAACTAAAAGCCACTTCAA+TGG | - | chr5_3:58257429-58257448 | None:intergenic | 40.0% | |
| GAACAACAACAGGAGAAAAC+TGG | + | chr5_3:58257839-58257858 | Msa0820730:CDS | 40.0% | |
| GGGGATGAAAAAACATGGAA+AGG | + | chr5_3:58258244-58258263 | Msa0820730:CDS | 40.0% | |
| CGATATCTTTCACATCTTGG+TGG | - | chr5_3:58258352-58258371 | None:intergenic | 40.0% | |
| ACACTTTGTAGCTCAACTGA+AGG | - | chr5_3:58258470-58258489 | None:intergenic | 40.0% | |
| AATGAGATTTCTCCTATGCC+AGG | + | chr5_3:58258530-58258549 | Msa0820730:CDS | 40.0% | |
| ATTATGGTGAGGATCAGAGG+AGG | + | chr5_3:58256212-58256231 | Msa0820730:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_3:58256269-58256288 | Msa0820730:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_3:58256278-58256297 | None:intergenic | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+CGG | - | chr5_3:58256308-58256327 | None:intergenic | 45.0% | |
| AGCTGAACAGAAGGAGCTAT+AGG | - | chr5_3:58256389-58256408 | None:intergenic | 45.0% | |
| GCGAGTCGACAAATCTGTTT+AGG | + | chr5_3:58256639-58256658 | Msa0820730:intron | 45.0% | |
| ! | TTGTGTTTCTGTTGCGCTTG+GGG | - | chr5_3:58256855-58256874 | None:intergenic | 45.0% |
| GGATTCTCGCCATTAGGATA+AGG | - | chr5_3:58256910-58256929 | None:intergenic | 45.0% | |
| TCACATGGTCACCTTGTTCT+TGG | - | chr5_3:58257071-58257090 | None:intergenic | 45.0% | |
| CAAGGTGACCATGTGAATCA+TGG | + | chr5_3:58257075-58257094 | Msa0820730:CDS | 45.0% | |
| GTGACCATGTGAATCATGGT+CGG | + | chr5_3:58257079-58257098 | Msa0820730:CDS | 45.0% | |
| ! | ATCAAAGACCTTTTCCTGCC+AGG | + | chr5_3:58257106-58257125 | Msa0820730:CDS | 45.0% |
| ! | TCAAAGACCTTTTCCTGCCA+GGG | + | chr5_3:58257107-58257126 | Msa0820730:CDS | 45.0% |
| TGTTCCAAGCTATGCTCAGA+GGG | - | chr5_3:58257824-58257843 | None:intergenic | 45.0% | |
| TTGTTCCAAGCTATGCTCAG+AGG | - | chr5_3:58257825-58257844 | None:intergenic | 45.0% | |
| GCATAGCTTGGAACAACAAC+AGG | + | chr5_3:58257829-58257848 | Msa0820730:CDS | 45.0% | |
| !! | GGCATCGATATCATTGAGTC+AGG | + | chr5_3:58257860-58257879 | Msa0820730:CDS | 45.0% |
| AAAGTCATGCCCCAAGGAAA+GGG | + | chr5_3:58257975-58257994 | Msa0820730:CDS | 45.0% | |
| AAAAACATGGAAAGGGACGC+TGG | + | chr5_3:58258252-58258271 | Msa0820730:CDS | 45.0% | |
| CAAAGTGTGATTCCTCCTCA+AGG | + | chr5_3:58258482-58258501 | Msa0820730:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_3:58258500-58258519 | None:intergenic | 45.0% | |
| ATTATGGTGAGGATCAGAGG+AGG | + | chr5_3:58256212-58256231 | Msa0820730:CDS | 45.0% | |
| !! | GATGTTCCTGTGTTGGTTGT+TGG | + | chr5_3:58256269-58256288 | Msa0820730:CDS | 45.0% |
| TTGGTTCCAACAACCAACAC+AGG | - | chr5_3:58256278-58256297 | None:intergenic | 45.0% | |
| GTTTGAGCATCAGAAAGAGC+CGG | - | chr5_3:58256308-58256327 | None:intergenic | 45.0% | |
| AGCTGAACAGAAGGAGCTAT+AGG | - | chr5_3:58256389-58256408 | None:intergenic | 45.0% | |
| GCGAGTCGACAAATCTGTTT+AGG | + | chr5_3:58256639-58256658 | Msa0820730:intron | 45.0% | |
| ! | TTGTGTTTCTGTTGCGCTTG+GGG | - | chr5_3:58256855-58256874 | None:intergenic | 45.0% |
| GGATTCTCGCCATTAGGATA+AGG | - | chr5_3:58256910-58256929 | None:intergenic | 45.0% | |
| TCACATGGTCACCTTGTTCT+TGG | - | chr5_3:58257071-58257090 | None:intergenic | 45.0% | |
| CAAGGTGACCATGTGAATCA+TGG | + | chr5_3:58257075-58257094 | Msa0820730:CDS | 45.0% | |
| GTGACCATGTGAATCATGGT+CGG | + | chr5_3:58257079-58257098 | Msa0820730:CDS | 45.0% | |
| ! | ATCAAAGACCTTTTCCTGCC+AGG | + | chr5_3:58257106-58257125 | Msa0820730:CDS | 45.0% |
| ! | TCAAAGACCTTTTCCTGCCA+GGG | + | chr5_3:58257107-58257126 | Msa0820730:CDS | 45.0% |
| TGTTCCAAGCTATGCTCAGA+GGG | - | chr5_3:58257824-58257843 | None:intergenic | 45.0% | |
| TTGTTCCAAGCTATGCTCAG+AGG | - | chr5_3:58257825-58257844 | None:intergenic | 45.0% | |
| GCATAGCTTGGAACAACAAC+AGG | + | chr5_3:58257829-58257848 | Msa0820730:CDS | 45.0% | |
| !! | GGCATCGATATCATTGAGTC+AGG | + | chr5_3:58257860-58257879 | Msa0820730:CDS | 45.0% |
| AAAGTCATGCCCCAAGGAAA+GGG | + | chr5_3:58257975-58257994 | Msa0820730:CDS | 45.0% | |
| AAAAACATGGAAAGGGACGC+TGG | + | chr5_3:58258252-58258271 | Msa0820730:CDS | 45.0% | |
| CAAAGTGTGATTCCTCCTCA+AGG | + | chr5_3:58258482-58258501 | Msa0820730:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_3:58258500-58258519 | None:intergenic | 45.0% | |
| TGTTGGAACCAAGTCTTCGC+CGG | + | chr5_3:58256286-58256305 | Msa0820730:CDS | 50.0% | |
| !! | TTCTGTGCCTAGTGTTGGTC+AGG | + | chr5_3:58256358-58256377 | Msa0820730:CDS | 50.0% |
| GCGACGATGCCTTATCCTAA+TGG | + | chr5_3:58256898-58256917 | Msa0820730:CDS | 50.0% | |
| GGCTTAGGATTCTCGCCATT+AGG | - | chr5_3:58256916-58256935 | None:intergenic | 50.0% | |
| GAATCCTAAGCCTGTATCCC+CGG | + | chr5_3:58256924-58256943 | Msa0820730:CDS | 50.0% | |
| TTGGCATCAATGGCATGAGC+AGG | - | chr5_3:58256976-58256995 | None:intergenic | 50.0% | |
| TGCCAAACATGTTCAGCCTC+CGG | + | chr5_3:58256990-58257009 | Msa0820730:CDS | 50.0% | |
| GATGCCGACCATGATTCACA+TGG | - | chr5_3:58257086-58257105 | None:intergenic | 50.0% | |
| ATGTTTGCCCTGGCAGGAAA+AGG | - | chr5_3:58257117-58257136 | None:intergenic | 50.0% | |
| TTGCATAGGCATGTTTGCCC+TGG | - | chr5_3:58257127-58257146 | None:intergenic | 50.0% | |
| TTGAGTAAACCAGGTGAGGC+TGG | + | chr5_3:58257610-58257629 | Msa0820730:intron | 50.0% | |
| TGAGTAAACCAGGTGAGGCT+GGG | + | chr5_3:58257611-58257630 | Msa0820730:intron | 50.0% | |
| AGCTATGCTCAGAGGGATCT+TGG | - | chr5_3:58257817-58257836 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCT+TGG | + | chr5_3:58257817-58257836 | Msa0820730:CDS | 50.0% | |
| CTTGGGGCATGACTTTCTTC+TGG | - | chr5_3:58257971-58257990 | None:intergenic | 50.0% | |
| CAGAAGAAAGTCATGCCCCA+AGG | + | chr5_3:58257969-58257988 | Msa0820730:CDS | 50.0% | |
| GAAAGTCATGCCCCAAGGAA+AGG | + | chr5_3:58257974-58257993 | Msa0820730:CDS | 50.0% | |
| TGTCCAATGCCCTTTCCTTG+GGG | - | chr5_3:58257987-58258006 | None:intergenic | 50.0% | |
| CTGTCCAATGCCCTTTCCTT+GGG | - | chr5_3:58257988-58258007 | None:intergenic | 50.0% | |
| TCTGTCCAATGCCCTTTCCT+TGG | - | chr5_3:58257989-58258008 | None:intergenic | 50.0% | |
| GCATGGCTAGCAATTTGAGC+TGG | - | chr5_3:58258314-58258333 | None:intergenic | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_3:58258497-58258516 | None:intergenic | 50.0% | |
| TGTTGGAACCAAGTCTTCGC+CGG | + | chr5_3:58256286-58256305 | Msa0820730:CDS | 50.0% | |
| !! | TTCTGTGCCTAGTGTTGGTC+AGG | + | chr5_3:58256358-58256377 | Msa0820730:CDS | 50.0% |
| GCGACGATGCCTTATCCTAA+TGG | + | chr5_3:58256898-58256917 | Msa0820730:CDS | 50.0% | |
| GGCTTAGGATTCTCGCCATT+AGG | - | chr5_3:58256916-58256935 | None:intergenic | 50.0% | |
| GAATCCTAAGCCTGTATCCC+CGG | + | chr5_3:58256924-58256943 | Msa0820730:CDS | 50.0% | |
| TTGGCATCAATGGCATGAGC+AGG | - | chr5_3:58256976-58256995 | None:intergenic | 50.0% | |
| TGCCAAACATGTTCAGCCTC+CGG | + | chr5_3:58256990-58257009 | Msa0820730:CDS | 50.0% | |
| GATGCCGACCATGATTCACA+TGG | - | chr5_3:58257086-58257105 | None:intergenic | 50.0% | |
| ATGTTTGCCCTGGCAGGAAA+AGG | - | chr5_3:58257117-58257136 | None:intergenic | 50.0% | |
| TTGCATAGGCATGTTTGCCC+TGG | - | chr5_3:58257127-58257146 | None:intergenic | 50.0% | |
| TTGAGTAAACCAGGTGAGGC+TGG | + | chr5_3:58257610-58257629 | Msa0820730:intron | 50.0% | |
| TGAGTAAACCAGGTGAGGCT+GGG | + | chr5_3:58257611-58257630 | Msa0820730:intron | 50.0% | |
| AGCTATGCTCAGAGGGATCT+TGG | - | chr5_3:58257817-58257836 | None:intergenic | 50.0% | |
| AGATCCCTCTGAGCATAGCT+TGG | + | chr5_3:58257817-58257836 | Msa0820730:CDS | 50.0% | |
| CTTGGGGCATGACTTTCTTC+TGG | - | chr5_3:58257971-58257990 | None:intergenic | 50.0% | |
| CAGAAGAAAGTCATGCCCCA+AGG | + | chr5_3:58257969-58257988 | Msa0820730:CDS | 50.0% | |
| GAAAGTCATGCCCCAAGGAA+AGG | + | chr5_3:58257974-58257993 | Msa0820730:CDS | 50.0% | |
| TGTCCAATGCCCTTTCCTTG+GGG | - | chr5_3:58257987-58258006 | None:intergenic | 50.0% | |
| CTGTCCAATGCCCTTTCCTT+GGG | - | chr5_3:58257988-58258007 | None:intergenic | 50.0% | |
| TCTGTCCAATGCCCTTTCCT+TGG | - | chr5_3:58257989-58258008 | None:intergenic | 50.0% | |
| GCATGGCTAGCAATTTGAGC+TGG | - | chr5_3:58258314-58258333 | None:intergenic | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_3:58258497-58258516 | None:intergenic | 50.0% | |
| GGATCAGAGGAGGAAAGCAG+AGG | + | chr5_3:58256222-58256241 | Msa0820730:CDS | 55.0% | |
| AGAAAGAGCCGGCGAAGACT+TGG | - | chr5_3:58256297-58256316 | None:intergenic | 55.0% | |
| GGAGCAACCTGACCAACACT+AGG | - | chr5_3:58256368-58256387 | None:intergenic | 55.0% | |
| TGACACGCCTCACTTTCCTG+TGG | + | chr5_3:58256876-58256895 | Msa0820730:CDS | 55.0% | |
| ATCGTCGCCACAGGAAAGTG+AGG | - | chr5_3:58256886-58256905 | None:intergenic | 55.0% | |
| AAACCTTGTCCTGCTGCTGC+CGG | - | chr5_3:58256946-58256965 | None:intergenic | 55.0% | |
| GCATCAATGGCATGAGCAGG+TGG | - | chr5_3:58256973-58256992 | None:intergenic | 55.0% | |
| CACCGGAGGCTGAACATGTT+TGG | - | chr5_3:58256995-58257014 | None:intergenic | 55.0% | |
| GCATTCGGATCTCCTTGCAC+CGG | - | chr5_3:58257012-58257031 | None:intergenic | 55.0% | |
| ATAGGCATGTTTGCCCTGGC+AGG | - | chr5_3:58257123-58257142 | None:intergenic | 55.0% | |
| GAGTAAACCAGGTGAGGCTG+GGG | + | chr5_3:58257612-58257631 | Msa0820730:intron | 55.0% | |
| GAGGGATCTTGGACTGAAGC+CGG | - | chr5_3:58257806-58257825 | None:intergenic | 55.0% | |
| ! | ATGCCCCAAGGAAAGGGCAT+TGG | + | chr5_3:58257981-58258000 | Msa0820730:CDS | 55.0% |
| GGATCAGAGGAGGAAAGCAG+AGG | + | chr5_3:58256222-58256241 | Msa0820730:CDS | 55.0% | |
| AGAAAGAGCCGGCGAAGACT+TGG | - | chr5_3:58256297-58256316 | None:intergenic | 55.0% | |
| GGAGCAACCTGACCAACACT+AGG | - | chr5_3:58256368-58256387 | None:intergenic | 55.0% | |
| TGACACGCCTCACTTTCCTG+TGG | + | chr5_3:58256876-58256895 | Msa0820730:CDS | 55.0% | |
| ATCGTCGCCACAGGAAAGTG+AGG | - | chr5_3:58256886-58256905 | None:intergenic | 55.0% | |
| AAACCTTGTCCTGCTGCTGC+CGG | - | chr5_3:58256946-58256965 | None:intergenic | 55.0% | |
| GCATCAATGGCATGAGCAGG+TGG | - | chr5_3:58256973-58256992 | None:intergenic | 55.0% | |
| CACCGGAGGCTGAACATGTT+TGG | - | chr5_3:58256995-58257014 | None:intergenic | 55.0% | |
| GCATTCGGATCTCCTTGCAC+CGG | - | chr5_3:58257012-58257031 | None:intergenic | 55.0% | |
| ATAGGCATGTTTGCCCTGGC+AGG | - | chr5_3:58257123-58257142 | None:intergenic | 55.0% | |
| GAGTAAACCAGGTGAGGCTG+GGG | + | chr5_3:58257612-58257631 | Msa0820730:intron | 55.0% | |
| GAGGGATCTTGGACTGAAGC+CGG | - | chr5_3:58257806-58257825 | None:intergenic | 55.0% | |
| ! | ATGCCCCAAGGAAAGGGCAT+TGG | + | chr5_3:58257981-58258000 | Msa0820730:CDS | 55.0% |
| GGCTTTCGATAGCGCGGTGA+TGG | - | chr5_3:58256829-58256848 | None:intergenic | 60.0% | |
| TCACCGCGCTATCGAAAGCC+AGG | + | chr5_3:58256829-58256848 | Msa0820730:CDS | 60.0% | |
| TTTCTGTTGCGCTTGGGGCC+TGG | - | chr5_3:58256850-58256869 | None:intergenic | 60.0% | |
| !! | GGATAAGGCATCGTCGCCAC+AGG | - | chr5_3:58256895-58256914 | None:intergenic | 60.0% |
| AACCTTGTCCTGCTGCTGCC+GGG | - | chr5_3:58256945-58256964 | None:intergenic | 60.0% | |
| CATGTTCAGCCTCCGGTGCA+AGG | + | chr5_3:58256997-58257016 | Msa0820730:CDS | 60.0% | |
| TTCGGATCTCCTTGCACCGG+AGG | - | chr5_3:58257009-58257028 | None:intergenic | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+TGG | - | chr5_3:58257622-58257641 | None:intergenic | 60.0% | |
| GGCTTTCGATAGCGCGGTGA+TGG | - | chr5_3:58256829-58256848 | None:intergenic | 60.0% | |
| TCACCGCGCTATCGAAAGCC+AGG | + | chr5_3:58256829-58256848 | Msa0820730:CDS | 60.0% | |
| TTTCTGTTGCGCTTGGGGCC+TGG | - | chr5_3:58256850-58256869 | None:intergenic | 60.0% | |
| !! | GGATAAGGCATCGTCGCCAC+AGG | - | chr5_3:58256895-58256914 | None:intergenic | 60.0% |
| AACCTTGTCCTGCTGCTGCC+GGG | - | chr5_3:58256945-58256964 | None:intergenic | 60.0% | |
| CATGTTCAGCCTCCGGTGCA+AGG | + | chr5_3:58256997-58257016 | Msa0820730:CDS | 60.0% | |
| TTCGGATCTCCTTGCACCGG+AGG | - | chr5_3:58257009-58257028 | None:intergenic | 60.0% | |
| TCTTAGTCCCCAGCCTCACC+TGG | - | chr5_3:58257622-58257641 | None:intergenic | 60.0% | |
| ! | GGGCCTGGCTTTCGATAGCG+CGG | - | chr5_3:58256835-58256854 | None:intergenic | 65.0% |
| GCTGCCGGGGATACAGGCTT+AGG | - | chr5_3:58256931-58256950 | None:intergenic | 65.0% | |
| ACCTTGTCCTGCTGCTGCCG+GGG | - | chr5_3:58256944-58256963 | None:intergenic | 65.0% | |
| ! | GGGCCTGGCTTTCGATAGCG+CGG | - | chr5_3:58256835-58256854 | None:intergenic | 65.0% |
| GCTGCCGGGGATACAGGCTT+AGG | - | chr5_3:58256931-58256950 | None:intergenic | 65.0% | |
| ACCTTGTCCTGCTGCTGCCG+GGG | - | chr5_3:58256944-58256963 | None:intergenic | 65.0% | |
| CCTGCTGCTGCCGGGGATAC+AGG | - | chr5_3:58256937-58256956 | None:intergenic | 70.0% | |
| CCTGTATCCCCGGCAGCAGC+AGG | + | chr5_3:58256934-58256953 | Msa0820730:CDS | 70.0% | |
| TCCCCGGCAGCAGCAGGACA+AGG | + | chr5_3:58256940-58256959 | Msa0820730:CDS | 70.0% | |
| CCTGCTGCTGCCGGGGATAC+AGG | - | chr5_3:58256937-58256956 | None:intergenic | 70.0% | |
| CCTGTATCCCCGGCAGCAGC+AGG | + | chr5_3:58256934-58256953 | Msa0820730:CDS | 70.0% | |
| TCCCCGGCAGCAGCAGGACA+AGG | + | chr5_3:58256940-58256959 | Msa0820730:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 58256206 | 58258559 | 58256206 | ID=Msa0820730;Name=Msa0820730 |
| chr5_3 | mRNA | 58256206 | 58258559 | 58256206 | ID=Msa0820730-mRNA-1;Parent=Msa0820730;Name=Msa0820730-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|396 |
| chr5_3 | exon | 58256206 | 58256424 | 58256206 | ID=Msa0820730-mRNA-1:exon:17692;Parent=Msa0820730-mRNA-1 |
| chr5_3 | exon | 58256784 | 58257150 | 58256784 | ID=Msa0820730-mRNA-1:exon:17693;Parent=Msa0820730-mRNA-1 |
| chr5_3 | exon | 58257744 | 58258020 | 58257744 | ID=Msa0820730-mRNA-1:exon:17694;Parent=Msa0820730-mRNA-1 |
| chr5_3 | exon | 58258232 | 58258559 | 58258232 | ID=Msa0820730-mRNA-1:exon:17695;Parent=Msa0820730-mRNA-1 |
| chr5_3 | CDS | 58256206 | 58256424 | 58256206 | ID=Msa0820730-mRNA-1:cds;Parent=Msa0820730-mRNA-1 |
| chr5_3 | CDS | 58256784 | 58257150 | 58256784 | ID=Msa0820730-mRNA-1:cds;Parent=Msa0820730-mRNA-1 |
| chr5_3 | CDS | 58257744 | 58258020 | 58257744 | ID=Msa0820730-mRNA-1:cds;Parent=Msa0820730-mRNA-1 |
| chr5_3 | CDS | 58258232 | 58258559 | 58258232 | ID=Msa0820730-mRNA-1:cds;Parent=Msa0820730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
