Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490140 | XP_003589014.1 | 91.925 | 322 | 25 | 1 | 1 | 322 | 1 | 321 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490140 | sp|Q9FFJ8|LIMYB_ARATH | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.89e-23 | 102 |
| Msa0490140 | sp|Q9FFJ8|LIMYB_ARATH | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.01e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490140 | G7IB81 | 91.925 | 322 | 25 | 1 | 1 | 322 | 1 | 321 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0490140 | 0.805100 | 1.571254e-49 | -8.615850e-47 |
| Msa0018940 | Msa0490140 | 0.808507 | 2.994391e-50 | -8.615850e-47 |
| Msa0021210 | Msa0490140 | 0.815765 | 7.817998e-52 | -8.615850e-47 |
| Msa0031520 | Msa0490140 | 0.921050 | 5.877063e-88 | -8.615850e-47 |
| Msa0031710 | Msa0490140 | 0.803229 | 3.851779e-49 | -8.615850e-47 |
| Msa0037880 | Msa0490140 | 0.809294 | 2.031298e-50 | -8.615850e-47 |
| Msa0042920 | Msa0490140 | 0.841389 | 4.896188e-58 | -8.615850e-47 |
| Msa0044260 | Msa0490140 | 0.803046 | 4.201454e-49 | -8.615850e-47 |
| Msa0044330 | Msa0490140 | 0.823193 | 1.580524e-53 | -8.615850e-47 |
| Msa0050200 | Msa0490140 | 0.808237 | 3.419107e-50 | -8.615850e-47 |
| Msa0050380 | Msa0490140 | 0.817911 | 2.579307e-52 | -8.615850e-47 |
| Msa0063880 | Msa0490140 | 0.802943 | 4.412678e-49 | -8.615850e-47 |
| Msa0084380 | Msa0490140 | 0.800202 | 1.610122e-48 | -8.615850e-47 |
| Msa0089820 | Msa0490140 | 0.826106 | 3.254624e-54 | -8.615850e-47 |
| Msa0104240 | Msa0490140 | 0.802608 | 5.174474e-49 | -8.615850e-47 |
| Msa0112690 | Msa0490140 | 0.812377 | 4.372140e-51 | -8.615850e-47 |
| Msa0114430 | Msa0490140 | 0.822748 | 2.006087e-53 | -8.615850e-47 |
| Msa0131770 | Msa0490140 | 0.808835 | 2.547522e-50 | -8.615850e-47 |
| Msa0135660 | Msa0490140 | 0.903437 | 3.470976e-79 | -8.615850e-47 |
| Msa0137100 | Msa0490140 | 0.803029 | 4.235847e-49 | -8.615850e-47 |
| Msa0150230 | Msa0490140 | 0.804164 | 2.464092e-49 | -8.615850e-47 |
| Msa0170220 | Msa0490140 | 0.820479 | 6.711168e-53 | -8.615850e-47 |
| Msa0171760 | Msa0490140 | 0.822553 | 2.227552e-53 | -8.615850e-47 |
| Msa0180500 | Msa0490140 | 0.820897 | 5.381594e-53 | -8.615850e-47 |
| Msa0198900 | Msa0490140 | 0.844110 | 9.260286e-59 | -8.615850e-47 |
| Msa0198910 | Msa0490140 | 0.961104 | 2.568363e-119 | -8.615850e-47 |
| Msa0230640 | Msa0490140 | -0.800464 | 1.423468e-48 | -8.615850e-47 |
| Msa0233080 | Msa0490140 | 0.860362 | 2.178011e-63 | -8.615850e-47 |
| Msa0236510 | Msa0490140 | -0.825918 | 3.607092e-54 | -8.615850e-47 |
| Msa0381610 | Msa0490140 | -0.803627 | 3.185781e-49 | -8.615850e-47 |
| Msa0385840 | Msa0490140 | 0.836159 | 1.101519e-56 | -8.615850e-47 |
| Msa0387280 | Msa0490140 | 0.811146 | 8.101715e-51 | -8.615850e-47 |
| Msa0393620 | Msa0490140 | 0.805116 | 1.558866e-49 | -8.615850e-47 |
| Msa0409690 | Msa0490140 | 0.801494 | 8.767951e-49 | -8.615850e-47 |
| Msa0413410 | Msa0490140 | 0.823762 | 1.162983e-53 | -8.615850e-47 |
| Msa0416650 | Msa0490140 | 0.817076 | 3.976984e-52 | -8.615850e-47 |
| Msa0424320 | Msa0490140 | 0.815442 | 9.226068e-52 | -8.615850e-47 |
| Msa0444750 | Msa0490140 | -0.821305 | 4.332549e-53 | -8.615850e-47 |
| Msa0461160 | Msa0490140 | 0.803732 | 3.029918e-49 | -8.615850e-47 |
| Msa0469940 | Msa0490140 | -0.809528 | 1.809397e-50 | -8.615850e-47 |
| Msa0479340 | Msa0490140 | 0.808405 | 3.148255e-50 | -8.615850e-47 |
| Msa0251320 | Msa0490140 | 0.803384 | 3.577683e-49 | -8.615850e-47 |
| Msa0251640 | Msa0490140 | 0.964738 | 1.048152e-123 | -8.615850e-47 |
| Msa0278190 | Msa0490140 | 0.849283 | 3.571410e-60 | -8.615850e-47 |
| Msa0288100 | Msa0490140 | 0.808567 | 2.907307e-50 | -8.615850e-47 |
| Msa0290870 | Msa0490140 | 0.806317 | 8.723714e-50 | -8.615850e-47 |
| Msa0305190 | Msa0490140 | 0.807092 | 5.985375e-50 | -8.615850e-47 |
| Msa0319170 | Msa0490140 | 0.805678 | 1.188934e-49 | -8.615850e-47 |
| Msa0321310 | Msa0490140 | 0.811037 | 8.552804e-51 | -8.615850e-47 |
| Msa0336320 | Msa0490140 | 0.819352 | 1.214766e-52 | -8.615850e-47 |
| Msa0342750 | Msa0490140 | 0.816436 | 5.536932e-52 | -8.615850e-47 |
| Msa0344690 | Msa0490140 | -0.816614 | 5.050477e-52 | -8.615850e-47 |
| Msa0350320 | Msa0490140 | -0.829049 | 6.396651e-55 | -8.615850e-47 |
| Msa0490140 | Msa0490150 | 0.844462 | 7.448071e-59 | -8.615850e-47 |
| Msa0490140 | Msa0514320 | 0.942261 | 9.819706e-102 | -8.615850e-47 |
| Msa0490140 | Msa0519520 | 0.805382 | 1.371184e-49 | -8.615850e-47 |
| Msa0490140 | Msa0519640 | 0.815598 | 8.515300e-52 | -8.615850e-47 |
| Msa0490140 | Msa0521740 | 0.808299 | 3.315935e-50 | -8.615850e-47 |
| Msa0490140 | Msa0523940 | 0.831513 | 1.599396e-55 | -8.615850e-47 |
| Msa0490140 | Msa0529040 | 0.801660 | 8.109686e-49 | -8.615850e-47 |
| Msa0490140 | Msa0545700 | 0.818370 | 2.030698e-52 | -8.615850e-47 |
| Msa0490140 | Msa0585230 | 0.839246 | 1.777030e-57 | -8.615850e-47 |
| Msa0490140 | Msa0602980 | 0.944913 | 8.121698e-104 | -8.615850e-47 |
| Msa0490140 | Msa0608160 | 0.815645 | 8.312084e-52 | -8.615850e-47 |
| Msa0490140 | Msa0615010 | 0.815569 | 8.643073e-52 | -8.615850e-47 |
| Msa0490140 | Msa0645300 | 0.935011 | 1.655057e-96 | -8.615850e-47 |
| Msa0490140 | Msa0648080 | 0.816630 | 5.008808e-52 | -8.615850e-47 |
| Msa0490140 | Msa0650630 | 0.825683 | 4.100095e-54 | -8.615850e-47 |
| Msa0490140 | Msa0672690 | 0.832844 | 7.495222e-56 | -8.615850e-47 |
| Msa0490140 | Msa0698930 | 0.817968 | 2.504583e-52 | -8.615850e-47 |
| Msa0490140 | Msa0701010 | 0.838510 | 2.754795e-57 | -8.615850e-47 |
| Msa0490140 | Msa0703780 | 0.824571 | 7.510508e-54 | -8.615850e-47 |
| Msa0490140 | Msa0731940 | 0.813335 | 2.697130e-51 | -8.615850e-47 |
| Msa0490140 | Msa0745260 | -0.802095 | 6.599087e-49 | -8.615850e-47 |
| Msa0490140 | Msa0748970 | 0.802629 | 5.124510e-49 | -8.615850e-47 |
| Msa0490140 | Msa0755180 | 0.838543 | 2.702242e-57 | -8.615850e-47 |
| Msa0490140 | Msa0766630 | 0.820576 | 6.377625e-53 | -8.615850e-47 |
| Msa0490140 | Msa0767730 | 0.835763 | 1.388414e-56 | -8.615850e-47 |
| Msa0490140 | Msa0768290 | 0.819545 | 1.098130e-52 | -8.615850e-47 |
| Msa0490140 | Msa0768310 | 0.822846 | 1.903943e-53 | -8.615850e-47 |
| Msa0490140 | Msa0768370 | 0.836276 | 1.028860e-56 | -8.615850e-47 |
| Msa0490140 | Msa0773180 | 0.843872 | 1.072791e-58 | -8.615850e-47 |
| Msa0490140 | Msa0773850 | 0.808290 | 3.330475e-50 | -8.615850e-47 |
| Msa0490140 | Msa0804800 | 0.809510 | 1.826355e-50 | -8.615850e-47 |
| Msa0490140 | Msa0804810 | 0.842550 | 2.415261e-58 | -8.615850e-47 |
| Msa0490140 | Msa0817460 | 0.805421 | 1.346022e-49 | -8.615850e-47 |
| Msa0490140 | Msa0820730 | 0.837267 | 5.750657e-57 | -8.615850e-47 |
| Msa0490140 | Msa0820850 | 0.820996 | 5.106274e-53 | -8.615850e-47 |
| Msa0490140 | Msa0824590 | 0.812300 | 4.545110e-51 | -8.615850e-47 |
| Msa0490140 | Msa0831850 | 0.808264 | 3.373108e-50 | -8.615850e-47 |
| Msa0490140 | Msa0844420 | 0.801136 | 1.037894e-48 | -8.615850e-47 |
| Msa0490140 | Msa0844450 | 0.806769 | 7.004028e-50 | -8.615850e-47 |
| Msa0490140 | Msa0844490 | 0.850928 | 1.236293e-60 | -8.615850e-47 |
| Msa0490140 | Msa0849030 | 0.818279 | 2.129950e-52 | -8.615850e-47 |
| Msa0490140 | Msa0853520 | 0.806106 | 9.664892e-50 | -8.615850e-47 |
| Msa0490140 | Msa0857640 | 0.810051 | 1.396532e-50 | -8.615850e-47 |
| Msa0490140 | Msa0861130 | 0.818407 | 1.992311e-52 | -8.615850e-47 |
| Msa0490140 | Msa0864070 | 0.803497 | 3.389932e-49 | -8.615850e-47 |
| Msa0490140 | Msa0877250 | 0.851112 | 1.097137e-60 | -8.615850e-47 |
| Msa0490140 | Msa0896840 | 0.822054 | 2.907581e-53 | -8.615850e-47 |
| Msa0490140 | Msa0897330 | 0.834373 | 3.111582e-56 | -8.615850e-47 |
| Msa0490140 | Msa0899430 | 0.838506 | 2.762385e-57 | -8.615850e-47 |
| Msa0490140 | Msa0899450 | 0.829934 | 3.898667e-55 | -8.615850e-47 |
| Msa0490140 | Msa0901070 | 0.811820 | 5.781319e-51 | -8.615850e-47 |
| Msa0490140 | Msa0907950 | 0.803899 | 2.796353e-49 | -8.615850e-47 |
| Msa0490140 | Msa0914270 | 0.843962 | 1.014936e-58 | -8.615850e-47 |
| Msa0490140 | Msa0927380 | 0.841064 | 5.960181e-58 | -8.615850e-47 |
| Msa0490140 | Msa0931520 | 0.831739 | 1.407314e-55 | -8.615850e-47 |
| Msa0490140 | Msa0935540 | 0.804068 | 2.579596e-49 | -8.615850e-47 |
| Msa0490140 | Msa0936300 | 0.837140 | 6.194857e-57 | -8.615850e-47 |
| Msa0490140 | Msa0948320 | 0.936668 | 1.202002e-97 | -8.615850e-47 |
| Msa0490140 | Msa0953120 | 0.800454 | 1.430380e-48 | -8.615850e-47 |
| Msa0490140 | Msa0958550 | 0.831663 | 1.469567e-55 | -8.615850e-47 |
| Msa0490140 | Msa0964900 | 0.810678 | 1.023015e-50 | -8.615850e-47 |
| Msa0490140 | Msa0966750 | 0.813061 | 3.097661e-51 | -8.615850e-47 |
| Msa0490140 | Msa0967180 | 0.800902 | 1.159174e-48 | -8.615850e-47 |
| Msa0490140 | Msa0969520 | 0.811143 | 8.111014e-51 | -8.615850e-47 |
| Msa0490140 | Msa0969810 | 0.800947 | 1.134713e-48 | -8.615850e-47 |
| Msa0490140 | Msa0973100 | 0.850698 | 1.434728e-60 | -8.615850e-47 |
| Msa0490140 | Msa0974070 | 0.815521 | 8.858796e-52 | -8.615850e-47 |
| Msa0490140 | Msa0974080 | 0.855964 | 4.430592e-62 | -8.615850e-47 |
| Msa0490140 | Msa0976670 | 0.815349 | 9.677363e-52 | -8.615850e-47 |
| Msa0490140 | Msa1000890 | 0.848935 | 4.461794e-60 | -8.615850e-47 |
| Msa0490140 | Msa1000900 | 0.844406 | 7.712975e-59 | -8.615850e-47 |
| Msa0490140 | Msa1001390 | 0.817983 | 2.485004e-52 | -8.615850e-47 |
| Msa0490140 | Msa1002850 | 0.810699 | 1.012157e-50 | -8.615850e-47 |
| Msa0490140 | Msa1009070 | 0.812051 | 5.149092e-51 | -8.615850e-47 |
| Msa0490140 | Msa1014540 | 0.800807 | 1.211919e-48 | -8.615850e-47 |
| Msa0490140 | Msa1023950 | 0.813040 | 3.130643e-51 | -8.615850e-47 |
| Msa0490140 | Msa1036610 | 0.800055 | 1.724282e-48 | -8.615850e-47 |
| Msa0490140 | Msa1054990 | 0.808452 | 3.075734e-50 | -8.615850e-47 |
| Msa0490140 | Msa1075220 | -0.811602 | 6.447929e-51 | -8.615850e-47 |
| Msa0490140 | Msa1075540 | 0.807497 | 4.911430e-50 | -8.615850e-47 |
| Msa0490140 | Msa1082580 | 0.818067 | 2.378164e-52 | -8.615850e-47 |
| Msa0490140 | Msa1098250 | 0.814512 | 1.483722e-51 | -8.615850e-47 |
| Msa0490140 | Msa1111870 | 0.834497 | 2.896140e-56 | -8.615850e-47 |
| Msa0490140 | Msa1113170 | 0.821180 | 4.629895e-53 | -8.615850e-47 |
| Msa0490140 | Msa1115870 | 0.834559 | 2.794318e-56 | -8.615850e-47 |
| Msa0490140 | Msa1117150 | 0.800362 | 1.493648e-48 | -8.615850e-47 |
| Msa0490140 | Msa1120740 | 0.803808 | 2.920968e-49 | -8.615850e-47 |
| Msa0490140 | Msa1121480 | 0.846146 | 2.608038e-59 | -8.615850e-47 |
| Msa0490140 | Msa1121490 | 0.843595 | 1.271815e-58 | -8.615850e-47 |
| Msa0490140 | Msa1137570 | 0.837105 | 6.325720e-57 | -8.615850e-47 |
| Msa0490140 | Msa1144720 | -0.809348 | 1.977785e-50 | -8.615850e-47 |
| Msa0490140 | Msa1156020 | 0.805017 | 1.635614e-49 | -8.615850e-47 |
| Msa0490140 | Msa1162550 | -0.817008 | 4.121162e-52 | -8.615850e-47 |
| Msa0490140 | Msa1174040 | 0.811430 | 7.030312e-51 | -8.615850e-47 |
| Msa0490140 | Msa1195180 | 0.804430 | 2.168220e-49 | -8.615850e-47 |
| Msa0490140 | Msa1195190 | 0.812053 | 5.145627e-51 | -8.615850e-47 |
| Msa0490140 | Msa1209530 | 0.803304 | 3.715348e-49 | -8.615850e-47 |
| Msa0490140 | Msa1227730 | 0.814029 | 1.896560e-51 | -8.615850e-47 |
| Msa0490140 | Msa1232740 | 0.813778 | 2.154512e-51 | -8.615850e-47 |
| Msa0490140 | Msa1237020 | 0.805816 | 1.111774e-49 | -8.615850e-47 |
| Msa0490140 | Msa1246360 | 0.802277 | 6.053828e-49 | -8.615850e-47 |
| Msa0490140 | Msa1246510 | 0.800743 | 1.249042e-48 | -8.615850e-47 |
| Msa0490140 | Msa1248310 | 0.803312 | 3.701092e-49 | -8.615850e-47 |
| Msa0490140 | Msa1248370 | 0.811537 | 6.663321e-51 | -8.615850e-47 |
| Msa0490140 | Msa1249280 | 0.813105 | 3.029685e-51 | -8.615850e-47 |
| Msa0490140 | Msa1276600 | 0.805371 | 1.378612e-49 | -8.615850e-47 |
| Msa0490140 | Msa1276890 | 0.813557 | 2.409786e-51 | -8.615850e-47 |
| Msa0490140 | Msa1277660 | 0.804795 | 1.819595e-49 | -8.615850e-47 |
| Msa0490140 | Msa1278110 | 0.803410 | 3.532146e-49 | -8.615850e-47 |
| Msa0490140 | Msa1282580 | -0.803418 | 3.518913e-49 | -8.615850e-47 |
| Msa0490140 | Msa1284680 | 0.840388 | 8.958732e-58 | -8.615850e-47 |
| Msa0490140 | Msa1286800 | 0.834886 | 2.312785e-56 | -8.615850e-47 |
| Msa0490140 | Msa1287190 | 0.832802 | 7.678341e-56 | -8.615850e-47 |
| Msa0490140 | Msa1287220 | 0.806723 | 7.163526e-50 | -8.615850e-47 |
| Msa0490140 | Msa1313320 | 0.824888 | 6.324585e-54 | -8.615850e-47 |
| Msa0490140 | Msa1348760 | 0.800936 | 1.140589e-48 | -8.615850e-47 |
| Msa0490140 | Msa1353470 | 0.802075 | 6.662063e-49 | -8.615850e-47 |
| Msa0490140 | Msa1366810 | 0.845150 | 4.858107e-59 | -8.615850e-47 |
| Msa0490140 | Msa1366970 | 0.833364 | 5.565945e-56 | -8.615850e-47 |
| Msa0490140 | Msa1378940 | 0.810626 | 1.049952e-50 | -8.615850e-47 |
| Msa0490140 | Msa1390700 | 0.806284 | 8.864963e-50 | -8.615850e-47 |
| Msa0490140 | Msa1394310 | 0.836584 | 8.587999e-57 | -8.615850e-47 |
| Msa0490140 | Msa1403340 | 0.803801 | 2.930437e-49 | -8.615850e-47 |
| Msa0490140 | Msa1412530 | 0.804968 | 1.674057e-49 | -8.615850e-47 |
| Msa0490140 | Msa1420820 | 0.842852 | 2.007704e-58 | -8.615850e-47 |
| Msa0490140 | Msa1427230 | 0.813833 | 2.094797e-51 | -8.615850e-47 |
| Msa0490140 | Msa1444440 | 0.803521 | 3.349986e-49 | -8.615850e-47 |
| Msa0490140 | Msa1451620 | -0.832688 | 8.193279e-56 | -8.615850e-47 |
| Msa0490140 | Msa1454620 | 0.804238 | 2.377185e-49 | -8.615850e-47 |
| Msa0490140 | Msa1455710 | 0.810667 | 1.028640e-50 | -8.615850e-47 |
| Msa0490140 | Msa1455720 | 0.805101 | 1.570625e-49 | -8.615850e-47 |
| Msa0490140 | Msa1458750 | 0.813467 | 2.522531e-51 | -8.615850e-47 |
| Msa0490140 | Msa1460830 | 0.809184 | 2.144901e-50 | -8.615850e-47 |
| Msa0490140 | Msa1466540 | 0.802579 | 5.247743e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490140 | MtrunA17_Chr2g0285481 | 62.963 | 324 | 114 | 4 | 2 | 321 | 1 | 322 | 3.95e-144 | 409 |
| Msa0490140 | MtrunA17_Chr1g0172741 | 62.346 | 324 | 116 | 4 | 2 | 321 | 1 | 322 | 9.53e-143 | 406 |
| Msa0490140 | MtrunA17_Chr8g0334551 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 3.60e-130 | 374 |
| Msa0490140 | MtrunA17_Chr2g0321391 | 67.213 | 244 | 77 | 2 | 79 | 321 | 3 | 244 | 1.86e-116 | 336 |
| Msa0490140 | MtrunA17_Chr5g0422701 | 65.174 | 201 | 67 | 2 | 122 | 321 | 14 | 212 | 1.52e-87 | 261 |
| Msa0490140 | MtrunA17_Chr2g0295811 | 41.629 | 221 | 111 | 6 | 119 | 321 | 10 | 230 | 1.26e-44 | 152 |
| Msa0490140 | MtrunA17_Chr5g0422691 | 57.143 | 105 | 42 | 2 | 2 | 103 | 1 | 105 | 6.39e-36 | 125 |
| Msa0490140 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 35 | 1 | 100 | 194 | 1 | 96 | 3.04e-33 | 118 |
| Msa0490140 | MtrunA17_Chr8g0362511 | 28.803 | 309 | 185 | 9 | 21 | 310 | 67 | 359 | 8.51e-27 | 108 |
| Msa0490140 | MtrunA17_Chr5g0402821 | 28.481 | 316 | 196 | 9 | 22 | 315 | 16 | 323 | 9.65e-27 | 107 |
| Msa0490140 | MtrunA17_Chr3g0113081 | 36.970 | 165 | 90 | 3 | 9 | 173 | 177 | 327 | 1.57e-25 | 107 |
| Msa0490140 | MtrunA17_Chr3g0113081 | 28.479 | 309 | 159 | 8 | 12 | 311 | 373 | 628 | 3.74e-25 | 105 |
| Msa0490140 | MtrunA17_Chr3g0113081 | 36.029 | 136 | 80 | 2 | 9 | 144 | 1 | 129 | 2.22e-18 | 85.9 |
| Msa0490140 | MtrunA17_Chr5g0405761 | 29.000 | 300 | 181 | 8 | 19 | 312 | 47 | 320 | 3.26e-24 | 100 |
| Msa0490140 | MtrunA17_Chr6g0469501 | 63.793 | 58 | 21 | 0 | 264 | 321 | 1 | 58 | 1.12e-21 | 86.7 |
| Msa0490140 | MtrunA17_Chr1g0176881 | 30.147 | 136 | 94 | 1 | 21 | 156 | 21 | 155 | 4.26e-16 | 79.0 |
| Msa0490140 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 2.33e-15 | 76.6 |
| Msa0490140 | MtrunA17_Chr8g0360271 | 25.256 | 293 | 183 | 11 | 33 | 310 | 21 | 292 | 6.62e-15 | 73.9 |
| Msa0490140 | MtrunA17_Chr1g0156481 | 22.772 | 303 | 204 | 8 | 19 | 311 | 12 | 294 | 3.13e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490140 | AT5G05800.1 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.97e-24 | 102 |
| Msa0490140 | AT5G05800.1 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.05e-16 | 80.1 |
| Msa0490140 | AT5G05800.5 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.97e-24 | 102 |
| Msa0490140 | AT5G05800.5 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.05e-16 | 80.1 |
| Msa0490140 | AT5G05800.3 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.97e-24 | 102 |
| Msa0490140 | AT5G05800.3 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.05e-16 | 80.1 |
| Msa0490140 | AT5G05800.2 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.97e-24 | 102 |
| Msa0490140 | AT5G05800.2 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.05e-16 | 80.1 |
| Msa0490140 | AT5G05800.4 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 4.97e-24 | 102 |
| Msa0490140 | AT5G05800.4 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.05e-16 | 80.1 |
| Msa0490140 | AT3G11290.2 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.95e-19 | 87.0 |
| Msa0490140 | AT3G11290.1 | 25.566 | 309 | 189 | 8 | 20 | 310 | 163 | 448 | 9.95e-19 | 87.0 |
| Msa0490140 | AT2G24960.1 | 29.688 | 128 | 89 | 1 | 17 | 144 | 164 | 290 | 6.15e-15 | 76.3 |
| Msa0490140 | AT2G24960.1 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 9.56e-11 | 63.5 |
| Msa0490140 | AT2G24960.2 | 29.688 | 128 | 89 | 1 | 17 | 144 | 164 | 290 | 7.11e-15 | 75.9 |
| Msa0490140 | AT2G24960.2 | 27.273 | 143 | 103 | 1 | 12 | 154 | 314 | 455 | 5.50e-12 | 67.0 |
| Msa0490140 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 5.55e-13 | 70.1 |
| Msa0490140 | AT2G19220.1 | 26.019 | 319 | 198 | 12 | 9 | 317 | 149 | 439 | 2.49e-11 | 64.7 |
| Msa0490140 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 8.11e-11 | 63.2 |
| Msa0490140 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 8.11e-11 | 63.2 |
Find 75 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 3_4:+11517076 | Msa0490140:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 3_4:+11517479 | Msa0490140:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 3_4:+11517470 | Msa0490140:CDS |
| GGCAGAAAACAAAAGCTAAT+TGG | 0.275009 | 3_4:+11516867 | Msa0490140:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 3_4:+11517088 | Msa0490140:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 3_4:+11517095 | Msa0490140:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 3_4:+11517094 | Msa0490140:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 3_4:-11517770 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 3_4:+11516907 | Msa0490140:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 3_4:-11516997 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 3_4:-11517167 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 3_4:+11517480 | Msa0490140:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 3_4:+11517077 | Msa0490140:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 3_4:+11517329 | Msa0490140:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 3_4:+11517804 | Msa0490140:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 3_4:+11516995 | Msa0490140:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 3_4:-11517148 | None:intergenic |
| CTTCCTCCTCACCTAGTGAT+GGG | 0.413468 | 3_4:+11516843 | Msa0490140:CDS |
| GCAGAAAACAAAAGCTAATT+GGG | 0.414370 | 3_4:+11516868 | Msa0490140:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 3_4:-11517309 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 3_4:+11516973 | Msa0490140:CDS |
| ATGATCTTTATTTGCATGCT+CGG | 0.426517 | 3_4:+11517723 | Msa0490140:CDS |
| GCTTCCTCCTCACCTAGTGA+TGG | 0.450197 | 3_4:+11516842 | Msa0490140:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 3_4:+11517029 | Msa0490140:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.486429 | 3_4:+11516844 | Msa0490140:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.494678 | 3_4:+11516845 | Msa0490140:CDS |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 3_4:+11517659 | Msa0490140:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 3_4:+11517422 | Msa0490140:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 3_4:-11517014 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 3_4:-11516939 | None:intergenic |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 3_4:+11517756 | Msa0490140:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 3_4:+11517342 | Msa0490140:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 3_4:+11517428 | Msa0490140:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 3_4:+11517053 | Msa0490140:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 3_4:-11517792 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 3_4:+11517156 | Msa0490140:CDS |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 3_4:+11517048 | Msa0490140:CDS |
| AGGTTAGTCATGAATGGCAG+TGG | 0.548613 | 3_4:-11517848 | None:intergenic |
| TCACACAGGTTAGTCATGAA+TGG | 0.548759 | 3_4:-11517854 | None:intergenic |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 3_4:+11517787 | Msa0490140:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 3_4:+11517098 | Msa0490140:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 3_4:-11517705 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 3_4:+11517528 | Msa0490140:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.563491 | 3_4:+11517859 | Msa0490140:CDS |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 3_4:+11517795 | Msa0490140:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 3_4:+11517644 | Msa0490140:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 3_4:+11516922 | Msa0490140:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 3_4:+11517356 | Msa0490140:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 3_4:+11517643 | Msa0490140:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 3_4:+11517670 | Msa0490140:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 3_4:+11517757 | Msa0490140:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 3_4:-11517793 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 3_4:+11517452 | Msa0490140:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 3_4:-11517368 | None:intergenic |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 3_4:+11517062 | Msa0490140:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 3_4:-11517124 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 3_4:-11517302 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.620135 | 3_4:+11516846 | Msa0490140:CDS |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 3_4:+11517439 | Msa0490140:CDS |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 3_4:+11517012 | Msa0490140:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 3_4:+11517357 | Msa0490140:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 3_4:-11517321 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 3_4:+11517518 | Msa0490140:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 3_4:+11517140 | Msa0490140:CDS |
| GGTTAGTCATGAATGGCAGT+GGG | 0.638001 | 3_4:-11517847 | None:intergenic |
| CCCATACATCCTAGTCACAC+AGG | 0.638813 | 3_4:-11517868 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 3_4:+11517099 | Msa0490140:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 3_4:+11516935 | Msa0490140:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 3_4:+11517358 | Msa0490140:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 3_4:+11516923 | Msa0490140:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 3_4:+11517141 | Msa0490140:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 3_4:+11517688 | Msa0490140:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 3_4:+11517343 | Msa0490140:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 3_4:+11517137 | Msa0490140:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 3_4:+11517779 | Msa0490140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr3_4:11517271-11517290 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr3_4:11517272-11517291 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr3_4:11517274-11517293 | Msa0490140:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr3_4:11517275-11517294 | Msa0490140:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr3_4:11517271-11517290 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr3_4:11517272-11517291 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr3_4:11517274-11517293 | Msa0490140:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr3_4:11517275-11517294 | Msa0490140:CDS | 20.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr3_4:11517267-11517286 | Msa0490140:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr3_4:11517276-11517295 | Msa0490140:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr3_4:11517479-11517498 | Msa0490140:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr3_4:11517480-11517499 | Msa0490140:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr3_4:11517506-11517525 | Msa0490140:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr3_4:11517267-11517286 | Msa0490140:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr3_4:11517276-11517295 | Msa0490140:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr3_4:11517479-11517498 | Msa0490140:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr3_4:11517480-11517499 | Msa0490140:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr3_4:11517506-11517525 | Msa0490140:CDS | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr3_4:11516820-11516839 | Msa0490140:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | + | chr3_4:11516868-11516887 | Msa0490140:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr3_4:11516907-11516926 | Msa0490140:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr3_4:11516957-11516976 | Msa0490140:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr3_4:11516972-11516991 | Msa0490140:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr3_4:11516973-11516992 | Msa0490140:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr3_4:11516995-11517014 | Msa0490140:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr3_4:11517000-11517019 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr3_4:11517076-11517095 | Msa0490140:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr3_4:11517077-11517096 | Msa0490140:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr3_4:11517170-11517189 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr3_4:11517213-11517232 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr3_4:11517389-11517408 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr3_4:11517406-11517425 | Msa0490140:CDS | 30.0% |
| ! | ATGATCTTTATTTGCATGCT+CGG | + | chr3_4:11517723-11517742 | Msa0490140:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr3_4:11516820-11516839 | Msa0490140:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | + | chr3_4:11516868-11516887 | Msa0490140:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr3_4:11516907-11516926 | Msa0490140:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr3_4:11516957-11516976 | Msa0490140:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr3_4:11516972-11516991 | Msa0490140:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr3_4:11516973-11516992 | Msa0490140:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr3_4:11516995-11517014 | Msa0490140:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr3_4:11517000-11517019 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr3_4:11517076-11517095 | Msa0490140:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr3_4:11517077-11517096 | Msa0490140:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr3_4:11517170-11517189 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr3_4:11517213-11517232 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr3_4:11517389-11517408 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | + | chr3_4:11517406-11517425 | Msa0490140:CDS | 30.0% |
| ! | ATGATCTTTATTTGCATGCT+CGG | + | chr3_4:11517723-11517742 | Msa0490140:CDS | 30.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | + | chr3_4:11516867-11516886 | Msa0490140:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr3_4:11516956-11516975 | Msa0490140:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr3_4:11517029-11517048 | Msa0490140:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr3_4:11517088-11517107 | Msa0490140:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr3_4:11517241-11517260 | Msa0490140:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr3_4:11517312-11517331 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr3_4:11517313-11517332 | Msa0490140:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr3_4:11517518-11517537 | Msa0490140:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr3_4:11517578-11517597 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr3_4:11517708-11517727 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | + | chr3_4:11516867-11516886 | Msa0490140:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr3_4:11516956-11516975 | Msa0490140:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr3_4:11517029-11517048 | Msa0490140:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr3_4:11517088-11517107 | Msa0490140:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr3_4:11517241-11517260 | Msa0490140:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr3_4:11517312-11517331 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr3_4:11517313-11517332 | Msa0490140:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr3_4:11517518-11517537 | Msa0490140:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr3_4:11517578-11517597 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr3_4:11517708-11517727 | None:intergenic | 35.0% |
| ! | GGAAGCCACAACATTTTTCT+TGG | - | chr3_4:11516828-11516847 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr3_4:11516960-11516979 | Msa0490140:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr3_4:11517048-11517067 | Msa0490140:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr3_4:11517053-11517072 | Msa0490140:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr3_4:11517094-11517113 | Msa0490140:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr3_4:11517095-11517114 | Msa0490140:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr3_4:11517324-11517343 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr3_4:11517322-11517341 | Msa0490140:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr3_4:11517329-11517348 | Msa0490140:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | + | chr3_4:11517470-11517489 | Msa0490140:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr3_4:11517670-11517689 | Msa0490140:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr3_4:11517773-11517792 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr3_4:11517779-11517798 | Msa0490140:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+TGG | - | chr3_4:11517857-11517876 | None:intergenic | 40.0% |
| ! | GGAAGCCACAACATTTTTCT+TGG | - | chr3_4:11516828-11516847 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr3_4:11516960-11516979 | Msa0490140:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr3_4:11517048-11517067 | Msa0490140:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr3_4:11517053-11517072 | Msa0490140:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr3_4:11517094-11517113 | Msa0490140:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr3_4:11517095-11517114 | Msa0490140:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr3_4:11517324-11517343 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr3_4:11517322-11517341 | Msa0490140:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr3_4:11517329-11517348 | Msa0490140:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | + | chr3_4:11517470-11517489 | Msa0490140:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr3_4:11517670-11517689 | Msa0490140:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr3_4:11517773-11517792 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr3_4:11517779-11517798 | Msa0490140:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+TGG | - | chr3_4:11517857-11517876 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr3_4:11516922-11516941 | Msa0490140:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr3_4:11516923-11516942 | Msa0490140:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr3_4:11517012-11517031 | Msa0490140:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr3_4:11517017-11517036 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr3_4:11517062-11517081 | Msa0490140:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr3_4:11517099-11517118 | Msa0490140:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr3_4:11517127-11517146 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr3_4:11517305-11517324 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr3_4:11517342-11517361 | Msa0490140:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr3_4:11517343-11517362 | Msa0490140:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr3_4:11517412-11517431 | Msa0490140:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr3_4:11517528-11517547 | Msa0490140:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | + | chr3_4:11517756-11517775 | Msa0490140:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | + | chr3_4:11517757-11517776 | Msa0490140:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr3_4:11517787-11517806 | Msa0490140:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr3_4:11517804-11517823 | Msa0490140:CDS | 45.0% | |
| ! | GGTTAGTCATGAATGGCAGT+GGG | - | chr3_4:11517850-11517869 | None:intergenic | 45.0% |
| ! | AGGTTAGTCATGAATGGCAG+TGG | - | chr3_4:11517851-11517870 | None:intergenic | 45.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr3_4:11516922-11516941 | Msa0490140:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr3_4:11516923-11516942 | Msa0490140:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr3_4:11517012-11517031 | Msa0490140:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr3_4:11517017-11517036 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr3_4:11517062-11517081 | Msa0490140:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr3_4:11517099-11517118 | Msa0490140:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr3_4:11517127-11517146 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr3_4:11517305-11517324 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr3_4:11517342-11517361 | Msa0490140:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr3_4:11517343-11517362 | Msa0490140:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | + | chr3_4:11517412-11517431 | Msa0490140:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr3_4:11517528-11517547 | Msa0490140:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | + | chr3_4:11517756-11517775 | Msa0490140:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | + | chr3_4:11517757-11517776 | Msa0490140:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr3_4:11517787-11517806 | Msa0490140:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr3_4:11517804-11517823 | Msa0490140:CDS | 45.0% | |
| ! | GGTTAGTCATGAATGGCAGT+GGG | - | chr3_4:11517850-11517869 | None:intergenic | 45.0% |
| ! | AGGTTAGTCATGAATGGCAG+TGG | - | chr3_4:11517851-11517870 | None:intergenic | 45.0% |
| CTTCCTCCTCACCTAGTGAT+GGG | + | chr3_4:11516843-11516862 | Msa0490140:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr3_4:11516844-11516863 | Msa0490140:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr3_4:11517098-11517117 | Msa0490140:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr3_4:11517137-11517156 | Msa0490140:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr3_4:11517140-11517159 | Msa0490140:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr3_4:11517141-11517160 | Msa0490140:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr3_4:11517356-11517375 | Msa0490140:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr3_4:11517357-11517376 | Msa0490140:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr3_4:11517371-11517390 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr3_4:11517452-11517471 | Msa0490140:CDS | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | + | chr3_4:11517643-11517662 | Msa0490140:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | + | chr3_4:11517659-11517678 | Msa0490140:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr3_4:11517795-11517814 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr3_4:11517796-11517815 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr3_4:11517795-11517814 | Msa0490140:CDS | 50.0% | |
| CTTCCTCCTCACCTAGTGAT+GGG | + | chr3_4:11516843-11516862 | Msa0490140:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr3_4:11516844-11516863 | Msa0490140:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr3_4:11517098-11517117 | Msa0490140:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr3_4:11517137-11517156 | Msa0490140:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr3_4:11517140-11517159 | Msa0490140:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr3_4:11517141-11517160 | Msa0490140:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr3_4:11517356-11517375 | Msa0490140:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr3_4:11517357-11517376 | Msa0490140:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr3_4:11517371-11517390 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr3_4:11517452-11517471 | Msa0490140:CDS | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | + | chr3_4:11517643-11517662 | Msa0490140:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | + | chr3_4:11517659-11517678 | Msa0490140:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr3_4:11517795-11517814 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr3_4:11517796-11517815 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr3_4:11517795-11517814 | Msa0490140:CDS | 50.0% | |
| GCTTCCTCCTCACCTAGTGA+TGG | + | chr3_4:11516842-11516861 | Msa0490140:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr3_4:11516845-11516864 | Msa0490140:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr3_4:11516857-11516876 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr3_4:11516935-11516954 | Msa0490140:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr3_4:11516942-11516961 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr3_4:11517151-11517170 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr3_4:11517156-11517175 | Msa0490140:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr3_4:11517358-11517377 | Msa0490140:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr3_4:11517422-11517441 | Msa0490140:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr3_4:11517428-11517447 | Msa0490140:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr3_4:11517439-11517458 | Msa0490140:CDS | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | + | chr3_4:11517644-11517663 | Msa0490140:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr3_4:11517688-11517707 | Msa0490140:CDS | 55.0% | |
| GCTTCCTCCTCACCTAGTGA+TGG | + | chr3_4:11516842-11516861 | Msa0490140:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr3_4:11516845-11516864 | Msa0490140:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr3_4:11516857-11516876 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr3_4:11516935-11516954 | Msa0490140:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr3_4:11516942-11516961 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr3_4:11517151-11517170 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr3_4:11517156-11517175 | Msa0490140:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr3_4:11517358-11517377 | Msa0490140:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | + | chr3_4:11517422-11517441 | Msa0490140:CDS | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | + | chr3_4:11517428-11517447 | Msa0490140:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr3_4:11517439-11517458 | Msa0490140:CDS | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | + | chr3_4:11517644-11517663 | Msa0490140:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr3_4:11517688-11517707 | Msa0490140:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr3_4:11516846-11516865 | Msa0490140:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr3_4:11516846-11516865 | Msa0490140:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr3_4:11516849-11516868 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr3_4:11516852-11516871 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr3_4:11516849-11516868 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr3_4:11516852-11516871 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11516815 | 11517880 | 11516815 | ID=Msa0490140;Name=Msa0490140 |
| chr3_4 | mRNA | 11516815 | 11517880 | 11516815 | ID=Msa0490140-mRNA-1;Parent=Msa0490140;Name=Msa0490140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326 |
| chr3_4 | exon | 11516815 | 11517177 | 11516815 | ID=Msa0490140-mRNA-1:exon:3558;Parent=Msa0490140-mRNA-1 |
| chr3_4 | exon | 11517263 | 11517880 | 11517263 | ID=Msa0490140-mRNA-1:exon:3559;Parent=Msa0490140-mRNA-1 |
| chr3_4 | CDS | 11516815 | 11517177 | 11516815 | ID=Msa0490140-mRNA-1:cds;Parent=Msa0490140-mRNA-1 |
| chr3_4 | CDS | 11517263 | 11517880 | 11517263 | ID=Msa0490140-mRNA-1:cds;Parent=Msa0490140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
