AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896840 MtrunA17_Chr6g0482261 94.239 243 14 0 19 261 1 243 1.24e-171 473
Msa0896840 MtrunA17_Chr6g0482111 50.204 245 112 2 24 259 1231 1474 1.34e-64 218
Msa0896840 MtrunA17_Chr6g0482091 37.190 242 135 5 26 254 172 409 9.73e-37 134
Msa0896840 MtrunA17_Chr3g0081531 34.167 240 147 2 26 255 1155 1393 1.35e-31 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTCTCTTCCTTTC+TGG 0.044232 6_1:-87767310 None:intergenic
AAAATCTAGCATACTGTTAT+AGG 0.215925 6_1:-87767604 None:intergenic
AATGTGTTTGTCAAATAAAT+TGG 0.275884 6_1:+87767172 Msa0896840:CDS
TGGCTGTTAACATGCTTAAA+TGG 0.280274 6_1:+87767688 Msa0896840:three_prime_UTR
AAATAAATTGGTTTGCTTGC+AGG 0.329157 6_1:+87767184 Msa0896840:CDS
AGCATATTGGACGGTGGAAT+TGG 0.344116 6_1:+87767632 Msa0896840:three_prime_UTR
CTGTTATAGGATAAAACATT+TGG 0.352769 6_1:-87767591 None:intergenic
GAGAGTTTCTTTCATCTGTA+TGG 0.353718 6_1:-87766934 None:intergenic
GCTGAAAACTGAGCAGGATT+TGG 0.362148 6_1:+87767367 Msa0896840:CDS
TTGTGGTTAATAATTGAGTA+TGG 0.368489 6_1:+87767668 Msa0896840:three_prime_UTR
CTCAATTTGCCACAAAATGA+AGG 0.370145 6_1:+87766966 Msa0896840:CDS
ACACTTTAATATCAGCATCT+AGG 0.389508 6_1:-87767241 None:intergenic
ATAAAACATTTGGATTAATA+CGG 0.394911 6_1:-87767581 None:intergenic
AATCTTTAGAGAATAAATCT+TGG 0.394963 6_1:-87766884 None:intergenic
CACTTTAATATCAGCATCTA+GGG 0.397286 6_1:-87767240 None:intergenic
AATGAATTGTTCTCGAAGCT+TGG 0.428695 6_1:-87767426 None:intergenic
ATTAACCACAAATTAATTTG+AGG 0.436736 6_1:-87767656 None:intergenic
GAACAATTCATTCGAAGTAC+TGG 0.454128 6_1:+87767437 Msa0896840:CDS
TACAACTTAGGATAAAACTT+AGG 0.459126 6_1:-87767541 None:intergenic
ATTCATTCACCAATTTAAAA+CGG 0.461600 6_1:-87767732 None:intergenic
TATTTACCGGCACAGGTGCG+GGG 0.470289 6_1:+87766684 Msa0896840:intron
ACAACTTAGGATAAAACTTA+GGG 0.481163 6_1:-87767540 None:intergenic
TAACAACAAAATCAGAAATA+CGG 0.490640 6_1:+87766997 Msa0896840:CDS
AAGTACTTTCCCCTACGATT+CGG 0.493417 6_1:-87767511 None:intergenic
TTGTTGATTCTCCGAATCGT+AGG 0.496891 6_1:+87767500 Msa0896840:three_prime_UTR
CATGTTTCATAAGAGAAAGA+TGG 0.509460 6_1:+87767280 Msa0896840:CDS
TAAATCTTGGAGAATATGAA+TGG 0.512242 6_1:-87766871 None:intergenic
TGTTGATTCTCCGAATCGTA+GGG 0.513497 6_1:+87767501 Msa0896840:three_prime_UTR
TTGGTCCTCAAATTAATTTG+TGG 0.514438 6_1:+87767651 Msa0896840:three_prime_UTR
GAAAACTGAGCAGGATTTGG+CGG 0.533480 6_1:+87767370 Msa0896840:CDS
TTCATCTGTATGGAACGTCC+TGG 0.540930 6_1:-87766924 None:intergenic
ATTTACCGGCACAGGTGCGG+GGG 0.552133 6_1:+87766685 Msa0896840:intron
TCCAAGGCTGAAAACTGAGC+AGG 0.553538 6_1:+87767361 Msa0896840:CDS
GACTATTCAAGAGCTAAAGA+TGG 0.553841 6_1:+87766728 Msa0896840:CDS
TTCAAAGATACTGCATGTGA+TGG 0.554419 6_1:-87766825 None:intergenic
AAAACTGAGCAGGATTTGGC+GGG 0.559552 6_1:+87767371 Msa0896840:CDS
AAGATGGAATTGTACCAGAA+AGG 0.561211 6_1:+87767296 Msa0896840:CDS
AACACGTGATAATATTGAAG+CGG 0.591614 6_1:+87767397 Msa0896840:CDS
AGAGTTTCATAATATCGAGA+AGG 0.593089 6_1:+87767145 Msa0896840:CDS
ATTTGATGATCAATGTTCCA+AGG 0.609761 6_1:+87767345 Msa0896840:CDS
TTTACCGGCACAGGTGCGGG+GGG 0.627096 6_1:+87766686 Msa0896840:intron
GATGGAGAAGTTGTGTCTGA+TGG 0.633487 6_1:-87766807 None:intergenic
TAATTTAGCATATTGGACGG+TGG 0.662631 6_1:+87767626 Msa0896840:three_prime_UTR
GTTGATTCTCCGAATCGTAG+GGG 0.666921 6_1:+87767502 Msa0896840:three_prime_UTR
GTGATAATATTGAAGCGGAG+TGG 0.721680 6_1:+87767402 Msa0896840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATGATAATAATTATTA+GGG - chr6_1:87766208-87766227 None:intergenic 10.0%
!! TAACAATGATAATAATTATT+AGG - chr6_1:87766209-87766228 None:intergenic 10.0%
!! AACAATGATAATAATTATTA+GGG - chr6_1:87766208-87766227 None:intergenic 10.0%
!! TAACAATGATAATAATTATT+AGG - chr6_1:87766209-87766228 None:intergenic 10.0%
!!! ATTTTTTTTAGTCTTTCTTT+AGG + chr6_1:87766022-87766041 Msa0896840:intron 15.0%
!! AATGACAAAAAAATTAGTAT+CGG - chr6_1:87766307-87766326 None:intergenic 15.0%
!!! ATTTTTCTTAGTAAACATTA+GGG - chr6_1:87766401-87766420 None:intergenic 15.0%
!!! TATTTTTCTTAGTAAACATT+AGG - chr6_1:87766402-87766421 None:intergenic 15.0%
!!! TGGATTTTTTTTTTTAAACT+TGG + chr6_1:87766478-87766497 Msa0896840:intron 15.0%
!! ATCAACAAAAAAAAAATGAA+TGG - chr6_1:87767488-87767507 None:intergenic 15.0%
!! ATAAAACATTTGGATTAATA+CGG - chr6_1:87767584-87767603 None:intergenic 15.0%
!!! TAGATTTTAATTTAGCATAT+TGG + chr6_1:87767619-87767638 Msa0896840:three_prime_UTR 15.0%
!!! ATTTTTTTTAGTCTTTCTTT+AGG + chr6_1:87766022-87766041 Msa0896840:intron 15.0%
!! AATGACAAAAAAATTAGTAT+CGG - chr6_1:87766307-87766326 None:intergenic 15.0%
!!! ATTTTTCTTAGTAAACATTA+GGG - chr6_1:87766401-87766420 None:intergenic 15.0%
!!! TATTTTTCTTAGTAAACATT+AGG - chr6_1:87766402-87766421 None:intergenic 15.0%
!!! TGGATTTTTTTTTTTAAACT+TGG + chr6_1:87766478-87766497 Msa0896840:intron 15.0%
!! ATCAACAAAAAAAAAATGAA+TGG - chr6_1:87767488-87767507 None:intergenic 15.0%
!! ATAAAACATTTGGATTAATA+CGG - chr6_1:87767584-87767603 None:intergenic 15.0%
!!! TAGATTTTAATTTAGCATAT+TGG + chr6_1:87767619-87767638 Msa0896840:three_prime_UTR 15.0%
!! AAACAACACTTTCATAAAAA+TGG - chr6_1:87766061-87766080 None:intergenic 20.0%
!!! AATCTTTAGAGAATAAATCT+TGG - chr6_1:87766887-87766906 None:intergenic 20.0%
!! TAACAACAAAATCAGAAATA+CGG + chr6_1:87766997-87767016 Msa0896840:CDS 20.0%
!! AATGTGTTTGTCAAATAAAT+TGG + chr6_1:87767172-87767191 Msa0896840:CDS 20.0%
!! GTATAAAAATGATACAACTT+AGG - chr6_1:87767556-87767575 None:intergenic 20.0%
!!! TTTTAATTTAGCATATTGGA+CGG + chr6_1:87767623-87767642 Msa0896840:three_prime_UTR 20.0%
!!! ATTAACCACAAATTAATTTG+AGG - chr6_1:87767659-87767678 None:intergenic 20.0%
!! ATTCATTCACCAATTTAAAA+CGG - chr6_1:87767735-87767754 None:intergenic 20.0%
!! AAACAACACTTTCATAAAAA+TGG - chr6_1:87766061-87766080 None:intergenic 20.0%
!!! AATCTTTAGAGAATAAATCT+TGG - chr6_1:87766887-87766906 None:intergenic 20.0%
!! TAACAACAAAATCAGAAATA+CGG + chr6_1:87766997-87767016 Msa0896840:CDS 20.0%
!! AATGTGTTTGTCAAATAAAT+TGG + chr6_1:87767172-87767191 Msa0896840:CDS 20.0%
!! GTATAAAAATGATACAACTT+AGG - chr6_1:87767556-87767575 None:intergenic 20.0%
!!! TTTTAATTTAGCATATTGGA+CGG + chr6_1:87767623-87767642 Msa0896840:three_prime_UTR 20.0%
!!! ATTAACCACAAATTAATTTG+AGG - chr6_1:87767659-87767678 None:intergenic 20.0%
!! ATTCATTCACCAATTTAAAA+CGG - chr6_1:87767735-87767754 None:intergenic 20.0%
! ATTCTTCCTAGTAAACATTA+GGG - chr6_1:87766120-87766139 None:intergenic 25.0%
! TATTCTTCCTAGTAAACATT+AGG - chr6_1:87766121-87766140 None:intergenic 25.0%
!! ATCATTGTTATTGTTGATAG+AGG + chr6_1:87766219-87766238 Msa0896840:intron 25.0%
!!! TTTTGTCATTGTTATTTGCT+CGG + chr6_1:87766317-87766336 Msa0896840:intron 25.0%
! TAAATCTTGGAGAATATGAA+TGG - chr6_1:87766874-87766893 None:intergenic 25.0%
!! AAACAAAATCCTTCATTTTG+TGG - chr6_1:87766978-87766997 None:intergenic 25.0%
! ACAACTTAGGATAAAACTTA+GGG - chr6_1:87767543-87767562 None:intergenic 25.0%
! TACAACTTAGGATAAAACTT+AGG - chr6_1:87767544-87767563 None:intergenic 25.0%
! CTGTTATAGGATAAAACATT+TGG - chr6_1:87767594-87767613 None:intergenic 25.0%
! AAAATCTAGCATACTGTTAT+AGG - chr6_1:87767607-87767626 None:intergenic 25.0%
! TTGTGGTTAATAATTGAGTA+TGG + chr6_1:87767668-87767687 Msa0896840:three_prime_UTR 25.0%
!!! CAAAGTATTCCGTTTTAAAT+TGG + chr6_1:87767723-87767742 Msa0896840:three_prime_UTR 25.0%
! ATTCTTCCTAGTAAACATTA+GGG - chr6_1:87766120-87766139 None:intergenic 25.0%
! TATTCTTCCTAGTAAACATT+AGG - chr6_1:87766121-87766140 None:intergenic 25.0%
!! ATCATTGTTATTGTTGATAG+AGG + chr6_1:87766219-87766238 Msa0896840:intron 25.0%
!!! TTTTGTCATTGTTATTTGCT+CGG + chr6_1:87766317-87766336 Msa0896840:intron 25.0%
! TAAATCTTGGAGAATATGAA+TGG - chr6_1:87766874-87766893 None:intergenic 25.0%
!! AAACAAAATCCTTCATTTTG+TGG - chr6_1:87766978-87766997 None:intergenic 25.0%
! ACAACTTAGGATAAAACTTA+GGG - chr6_1:87767543-87767562 None:intergenic 25.0%
! TACAACTTAGGATAAAACTT+AGG - chr6_1:87767544-87767563 None:intergenic 25.0%
! CTGTTATAGGATAAAACATT+TGG - chr6_1:87767594-87767613 None:intergenic 25.0%
! AAAATCTAGCATACTGTTAT+AGG - chr6_1:87767607-87767626 None:intergenic 25.0%
! TTGTGGTTAATAATTGAGTA+TGG + chr6_1:87767668-87767687 Msa0896840:three_prime_UTR 25.0%
!!! CAAAGTATTCCGTTTTAAAT+TGG + chr6_1:87767723-87767742 Msa0896840:three_prime_UTR 25.0%
!! GGTCACATAGAATTTTAAAG+CGG - chr6_1:87766286-87766305 None:intergenic 30.0%
TAAATGCATATTCTATGAGC+AGG + chr6_1:87766365-87766384 Msa0896840:intron 30.0%
ACAATAAAAATCACGTGACT+TGG - chr6_1:87766512-87766531 None:intergenic 30.0%
!! TTTGTGATTGTTATTTGCTC+TGG + chr6_1:87766588-87766607 Msa0896840:intron 30.0%
!! ATTGTTATTTGCTCTGGAAT+TGG + chr6_1:87766594-87766613 Msa0896840:intron 30.0%
TTGTTATATCGATCTTGAGT+TGG + chr6_1:87766646-87766665 Msa0896840:intron 30.0%
!!! GAGAATATGAATGGCTTTTT+TGG - chr6_1:87766865-87766884 None:intergenic 30.0%
AGAGTTTCATAATATCGAGA+AGG + chr6_1:87767145-87767164 Msa0896840:CDS 30.0%
!! AAATAAATTGGTTTGCTTGC+AGG + chr6_1:87767184-87767203 Msa0896840:CDS 30.0%
CACTTTAATATCAGCATCTA+GGG - chr6_1:87767243-87767262 None:intergenic 30.0%
ACACTTTAATATCAGCATCT+AGG - chr6_1:87767244-87767263 None:intergenic 30.0%
CATGTTTCATAAGAGAAAGA+TGG + chr6_1:87767280-87767299 Msa0896840:CDS 30.0%
! ATTTGATGATCAATGTTCCA+AGG + chr6_1:87767345-87767364 Msa0896840:CDS 30.0%
AACACGTGATAATATTGAAG+CGG + chr6_1:87767397-87767416 Msa0896840:CDS 30.0%
! TTGGTCCTCAAATTAATTTG+TGG + chr6_1:87767651-87767670 Msa0896840:three_prime_UTR 30.0%
!! GGTCACATAGAATTTTAAAG+CGG - chr6_1:87766286-87766305 None:intergenic 30.0%
TAAATGCATATTCTATGAGC+AGG + chr6_1:87766365-87766384 Msa0896840:intron 30.0%
ACAATAAAAATCACGTGACT+TGG - chr6_1:87766512-87766531 None:intergenic 30.0%
!! TTTGTGATTGTTATTTGCTC+TGG + chr6_1:87766588-87766607 Msa0896840:intron 30.0%
!! ATTGTTATTTGCTCTGGAAT+TGG + chr6_1:87766594-87766613 Msa0896840:intron 30.0%
TTGTTATATCGATCTTGAGT+TGG + chr6_1:87766646-87766665 Msa0896840:intron 30.0%
!!! GAGAATATGAATGGCTTTTT+TGG - chr6_1:87766865-87766884 None:intergenic 30.0%
AGAGTTTCATAATATCGAGA+AGG + chr6_1:87767145-87767164 Msa0896840:CDS 30.0%
!! AAATAAATTGGTTTGCTTGC+AGG + chr6_1:87767184-87767203 Msa0896840:CDS 30.0%
CACTTTAATATCAGCATCTA+GGG - chr6_1:87767243-87767262 None:intergenic 30.0%
ACACTTTAATATCAGCATCT+AGG - chr6_1:87767244-87767263 None:intergenic 30.0%
CATGTTTCATAAGAGAAAGA+TGG + chr6_1:87767280-87767299 Msa0896840:CDS 30.0%
! ATTTGATGATCAATGTTCCA+AGG + chr6_1:87767345-87767364 Msa0896840:CDS 30.0%
AACACGTGATAATATTGAAG+CGG + chr6_1:87767397-87767416 Msa0896840:CDS 30.0%
! TTGGTCCTCAAATTAATTTG+TGG + chr6_1:87767651-87767670 Msa0896840:three_prime_UTR 30.0%
GAAACAAACATCATCAAAGG+TGG - chr6_1:87766096-87766115 None:intergenic 35.0%
GGAGAAACAAACATCATCAA+AGG - chr6_1:87766099-87766118 None:intergenic 35.0%
GTTTCTCCCTAATGTTTACT+AGG + chr6_1:87766111-87766130 Msa0896840:intron 35.0%
! AAAAATCACGTGACTTGGAT+CGG - chr6_1:87766507-87766526 None:intergenic 35.0%
TCACACACAGAATGTTAAAG+TGG - chr6_1:87766555-87766574 None:intergenic 35.0%
GACTATTCAAGAGCTAAAGA+TGG + chr6_1:87766728-87766747 Msa0896840:CDS 35.0%
TTCAAAGATACTGCATGTGA+TGG - chr6_1:87766828-87766847 None:intergenic 35.0%
!! TTCTCTCTTTTGATTCATCC+AGG + chr6_1:87766906-87766925 Msa0896840:CDS 35.0%
GAGAGTTTCTTTCATCTGTA+TGG - chr6_1:87766937-87766956 None:intergenic 35.0%
! CATTTTGTGGCAAATTGAGA+AGG - chr6_1:87766965-87766984 None:intergenic 35.0%
CTCAATTTGCCACAAAATGA+AGG + chr6_1:87766966-87766985 Msa0896840:CDS 35.0%
!! TGTTGCAATGTTTTGAACAG+TGG + chr6_1:87767024-87767043 Msa0896840:CDS 35.0%
!! ATGTTTTGAACAGTGGAGTT+TGG + chr6_1:87767031-87767050 Msa0896840:CDS 35.0%
AAGATGGAATTGTACCAGAA+AGG + chr6_1:87767296-87767315 Msa0896840:CDS 35.0%
AATGAATTGTTCTCGAAGCT+TGG - chr6_1:87767429-87767448 None:intergenic 35.0%
GAACAATTCATTCGAAGTAC+TGG + chr6_1:87767437-87767456 Msa0896840:CDS 35.0%
TAATTTAGCATATTGGACGG+TGG + chr6_1:87767626-87767645 Msa0896840:three_prime_UTR 35.0%
TGGCTGTTAACATGCTTAAA+TGG + chr6_1:87767688-87767707 Msa0896840:three_prime_UTR 35.0%
GAAACAAACATCATCAAAGG+TGG - chr6_1:87766096-87766115 None:intergenic 35.0%
GGAGAAACAAACATCATCAA+AGG - chr6_1:87766099-87766118 None:intergenic 35.0%
GTTTCTCCCTAATGTTTACT+AGG + chr6_1:87766111-87766130 Msa0896840:intron 35.0%
! AAAAATCACGTGACTTGGAT+CGG - chr6_1:87766507-87766526 None:intergenic 35.0%
TCACACACAGAATGTTAAAG+TGG - chr6_1:87766555-87766574 None:intergenic 35.0%
GACTATTCAAGAGCTAAAGA+TGG + chr6_1:87766728-87766747 Msa0896840:CDS 35.0%
TTCAAAGATACTGCATGTGA+TGG - chr6_1:87766828-87766847 None:intergenic 35.0%
!! TTCTCTCTTTTGATTCATCC+AGG + chr6_1:87766906-87766925 Msa0896840:CDS 35.0%
GAGAGTTTCTTTCATCTGTA+TGG - chr6_1:87766937-87766956 None:intergenic 35.0%
! CATTTTGTGGCAAATTGAGA+AGG - chr6_1:87766965-87766984 None:intergenic 35.0%
CTCAATTTGCCACAAAATGA+AGG + chr6_1:87766966-87766985 Msa0896840:CDS 35.0%
!! TGTTGCAATGTTTTGAACAG+TGG + chr6_1:87767024-87767043 Msa0896840:CDS 35.0%
!! ATGTTTTGAACAGTGGAGTT+TGG + chr6_1:87767031-87767050 Msa0896840:CDS 35.0%
AAGATGGAATTGTACCAGAA+AGG + chr6_1:87767296-87767315 Msa0896840:CDS 35.0%
AATGAATTGTTCTCGAAGCT+TGG - chr6_1:87767429-87767448 None:intergenic 35.0%
GAACAATTCATTCGAAGTAC+TGG + chr6_1:87767437-87767456 Msa0896840:CDS 35.0%
TAATTTAGCATATTGGACGG+TGG + chr6_1:87767626-87767645 Msa0896840:three_prime_UTR 35.0%
TGGCTGTTAACATGCTTAAA+TGG + chr6_1:87767688-87767707 Msa0896840:three_prime_UTR 35.0%
GTGATTCTTATTCTCTCACG+TGG + chr6_1:87766249-87766268 Msa0896840:intron 40.0%
!! TGCTATTGTTGATAGTGACG+TGG + chr6_1:87766458-87766477 Msa0896840:intron 40.0%
! GTGATTTTTATTGTCGCACG+TGG + chr6_1:87766518-87766537 Msa0896840:intron 40.0%
! CTGACTGGTTGTCTATTTAC+CGG + chr6_1:87766671-87766690 Msa0896840:intron 40.0%
CTTTCACTTCTCTTCCTTTC+TGG - chr6_1:87767313-87767332 None:intergenic 40.0%
GTGATAATATTGAAGCGGAG+TGG + chr6_1:87767402-87767421 Msa0896840:CDS 40.0%
!! TTGTTGATTCTCCGAATCGT+AGG + chr6_1:87767500-87767519 Msa0896840:three_prime_UTR 40.0%
!! TGTTGATTCTCCGAATCGTA+GGG + chr6_1:87767501-87767520 Msa0896840:three_prime_UTR 40.0%
AAGTACTTTCCCCTACGATT+CGG - chr6_1:87767514-87767533 None:intergenic 40.0%
GAACATTTGTTTCACACCCA+TGG - chr6_1:87765956-87765975 None:intergenic 40.0%
GTGATTCTTATTCTCTCACG+TGG + chr6_1:87766249-87766268 Msa0896840:intron 40.0%
!! TGCTATTGTTGATAGTGACG+TGG + chr6_1:87766458-87766477 Msa0896840:intron 40.0%
! GTGATTTTTATTGTCGCACG+TGG + chr6_1:87766518-87766537 Msa0896840:intron 40.0%
! CTGACTGGTTGTCTATTTAC+CGG + chr6_1:87766671-87766690 Msa0896840:intron 40.0%
CTTTCACTTCTCTTCCTTTC+TGG - chr6_1:87767313-87767332 None:intergenic 40.0%
GTGATAATATTGAAGCGGAG+TGG + chr6_1:87767402-87767421 Msa0896840:CDS 40.0%
!! TTGTTGATTCTCCGAATCGT+AGG + chr6_1:87767500-87767519 Msa0896840:three_prime_UTR 40.0%
!! TGTTGATTCTCCGAATCGTA+GGG + chr6_1:87767501-87767520 Msa0896840:three_prime_UTR 40.0%
AAGTACTTTCCCCTACGATT+CGG - chr6_1:87767514-87767533 None:intergenic 40.0%
!! GATCTTGAGTTGGTTCTGAC+TGG + chr6_1:87766656-87766675 Msa0896840:intron 45.0%
GATGGAGAAGTTGTGTCTGA+TGG - chr6_1:87766810-87766829 None:intergenic 45.0%
TTCATCTGTATGGAACGTCC+TGG - chr6_1:87766927-87766946 None:intergenic 45.0%
GCTGAAAACTGAGCAGGATT+TGG + chr6_1:87767367-87767386 Msa0896840:CDS 45.0%
GAAAACTGAGCAGGATTTGG+CGG + chr6_1:87767370-87767389 Msa0896840:CDS 45.0%
AAAACTGAGCAGGATTTGGC+GGG + chr6_1:87767371-87767390 Msa0896840:CDS 45.0%
! GTTGATTCTCCGAATCGTAG+GGG + chr6_1:87767502-87767521 Msa0896840:three_prime_UTR 45.0%
AGCATATTGGACGGTGGAAT+TGG + chr6_1:87767632-87767651 Msa0896840:three_prime_UTR 45.0%
!! GATCTTGAGTTGGTTCTGAC+TGG + chr6_1:87766656-87766675 Msa0896840:intron 45.0%
GATGGAGAAGTTGTGTCTGA+TGG - chr6_1:87766810-87766829 None:intergenic 45.0%
TTCATCTGTATGGAACGTCC+TGG - chr6_1:87766927-87766946 None:intergenic 45.0%
GCTGAAAACTGAGCAGGATT+TGG + chr6_1:87767367-87767386 Msa0896840:CDS 45.0%
GAAAACTGAGCAGGATTTGG+CGG + chr6_1:87767370-87767389 Msa0896840:CDS 45.0%
AAAACTGAGCAGGATTTGGC+GGG + chr6_1:87767371-87767390 Msa0896840:CDS 45.0%
! GTTGATTCTCCGAATCGTAG+GGG + chr6_1:87767502-87767521 Msa0896840:three_prime_UTR 45.0%
AGCATATTGGACGGTGGAAT+TGG + chr6_1:87767632-87767651 Msa0896840:three_prime_UTR 45.0%
!! ATATACTTATTATAATAATT+AGG + chr6_1:87766143-87766162 Msa0896840:intron 5.0%
!! TATACTTATTATAATAATTA+GGG + chr6_1:87766144-87766163 Msa0896840:intron 5.0%
!! ATATACTTATTATAATAATT+AGG + chr6_1:87766143-87766162 Msa0896840:intron 5.0%
!! TATACTTATTATAATAATTA+GGG + chr6_1:87766144-87766163 Msa0896840:intron 5.0%
!! GCTCTGGAATTGGTTCTGAC+TGG + chr6_1:87766604-87766623 Msa0896840:intron 50.0%
GGTTGTCTATTTACCGGCAC+AGG + chr6_1:87766677-87766696 Msa0896840:intron 50.0%
TCTATTTACCGGCACAGGTG+CGG + chr6_1:87766682-87766701 Msa0896840:intron 50.0%
TCCAAGGCTGAAAACTGAGC+AGG + chr6_1:87767361-87767380 Msa0896840:CDS 50.0%
! TCCTGCTCAGTTTTCAGCCT+TGG - chr6_1:87767365-87767384 None:intergenic 50.0%
!! GCTCTGGAATTGGTTCTGAC+TGG + chr6_1:87766604-87766623 Msa0896840:intron 50.0%
GGTTGTCTATTTACCGGCAC+AGG + chr6_1:87766677-87766696 Msa0896840:intron 50.0%
TCTATTTACCGGCACAGGTG+CGG + chr6_1:87766682-87766701 Msa0896840:intron 50.0%
TCCAAGGCTGAAAACTGAGC+AGG + chr6_1:87767361-87767380 Msa0896840:CDS 50.0%
! TCCTGCTCAGTTTTCAGCCT+TGG - chr6_1:87767365-87767384 None:intergenic 50.0%
CTATTTACCGGCACAGGTGC+GGG + chr6_1:87766683-87766702 Msa0896840:intron 55.0%
TATTTACCGGCACAGGTGCG+GGG + chr6_1:87766684-87766703 Msa0896840:intron 55.0%
CTATTTACCGGCACAGGTGC+GGG + chr6_1:87766683-87766702 Msa0896840:intron 55.0%
TATTTACCGGCACAGGTGCG+GGG + chr6_1:87766684-87766703 Msa0896840:intron 55.0%
ATTTACCGGCACAGGTGCGG+GGG + chr6_1:87766685-87766704 Msa0896840:intron 60.0%
ATTTACCGGCACAGGTGCGG+GGG + chr6_1:87766685-87766704 Msa0896840:intron 60.0%
TTTACCGGCACAGGTGCGGG+GGG + chr6_1:87766686-87766705 Msa0896840:intron 65.0%
ATTTCCCCCCGCACCTGTGC+CGG - chr6_1:87766693-87766712 None:intergenic 65.0%
TTTACCGGCACAGGTGCGGG+GGG + chr6_1:87766686-87766705 Msa0896840:intron 65.0%
ATTTCCCCCCGCACCTGTGC+CGG - chr6_1:87766693-87766712 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 87765955 87767767 87765955 ID=Msa0896840;Name=Msa0896840
chr6_1 mRNA 87765955 87767767 87765955 ID=Msa0896840-mRNA-1;Parent=Msa0896840;Name=Msa0896840-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0.5|1|0|0.5|2|289|261
chr6_1 exon 87765955 87765960 87765955 ID=Msa0896840-mRNA-1:exon:14813;Parent=Msa0896840-mRNA-1
chr6_1 exon 87766699 87767767 87766699 ID=Msa0896840-mRNA-1:exon:14814;Parent=Msa0896840-mRNA-1
chr6_1 CDS 87765955 87765960 87765955 ID=Msa0896840-mRNA-1:cds;Parent=Msa0896840-mRNA-1
chr6_1 CDS 87766699 87767478 87766699 ID=Msa0896840-mRNA-1:cds;Parent=Msa0896840-mRNA-1
chr6_1 three_prime_UTR 87767479 87767767 87767479 ID=Msa0896840-mRNA-1:three_prime_utr;Parent=Msa0896840-mRNA-1
Gene Sequence

>Msa0896840

ATGGGTGTGCGGGGGGAAATATTTCGCATTCAAGAGACTATTCAAGAGCTAAAGATGGTAAATCACGACACGCAAAATGAAACTGATATGAGAGCATTTTATGCATCTCTAAAACCATCAGACACAACTTCTCCATCACATGCAGTATCTTTGAAAAGTAGTGAAAACACCAAAAAAGCCATTCATATTCTCCAAGATTTATTCTCTAAAGATTTCTCTCTTTTGATTCATCCAGGACGTTCCATACAGATGAAAGAAACTCTCAGATACCTTCTCAATTTGCCACAAAATGAAGGATTTTGTTTAACAACAAAATCAGAAATACGGAAACTGTTGCAATGTTTTGAACAGTGGAGTTTGGATTATCACAATGCATCAAGTCTTTCAGCAGCTGCAGAAACTGAATTATCAAAAGCAAGTGAAGTGATGAATGATCTCGACGCTAATGTTCAAGAGTTTCATAATATCGAGAAGGAAGAAATGTGTTTGTCAAATAAATTGGTTTGCTTGCAGGAAGAGAAGAGAATGCTTGAAGAGAAAATTAAAACCCTAGATGCTGATATTAAAGTGTCTACAAAAAGAAGAGACATGTTTCATAAGAGAAAGATGGAATTGTACCAGAAAGGAAGAGAAGTGAAAGCAAAAAGAGATGATTTGATGATCAATGTTCCAAGGCTGAAAACTGAGCAGGATTTGGCGGGTAAAACACGTGATAATATTGAAGCGGAGTGGTCCAAGCTTCGAGAACAATTCATTCGAAGTACTGGTATTAAAGAATTGATCTAA
Protein sequence

>Msa0896840

MGVRGEIFRIQETIQELKMVNHDTQNETDMRAFYASLKPSDTTSPSHAVSLKSSENTKKAIHILQDLFSKDFSLLIHPGRSIQMKETLRYLLNLPQNEGFCLTTKSEIRKLLQCFEQWSLDYHNASSLSAAAETELSKASEVMNDLDANVQEFHNIEKEEMCLSNKLVCLQEEKRMLEEKIKTLDADIKVSTKRRDMFHKRKMELYQKGREVKAKRDDLMINVPRLKTEQDLAGKTRDNIEAEWSKLREQFIRSTGIKELI*