AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251640 MtrunA17_Chr2g0285481 62.654 324 115 4 2 321 1 322 1.68e-142 405
Msa0251640 MtrunA17_Chr1g0172741 62.037 324 117 4 2 321 1 322 3.75e-141 402
Msa0251640 MtrunA17_Chr8g0334551 56.707 328 135 2 1 321 1 328 5.71e-129 371
Msa0251640 MtrunA17_Chr2g0321391 66.803 244 78 2 79 321 3 244 3.60e-115 333
Msa0251640 MtrunA17_Chr5g0422701 64.677 201 68 2 122 321 14 212 3.11e-86 258
Msa0251640 MtrunA17_Chr2g0295811 41.176 221 112 6 119 321 10 230 2.29e-43 149
Msa0251640 MtrunA17_Chr5g0422691 63.043 92 33 1 13 103 14 105 1.12e-35 125
Msa0251640 MtrunA17_Chr2g0295611 61.458 96 36 1 100 194 1 96 7.02e-32 114
Msa0251640 MtrunA17_Chr8g0362511 28.479 309 186 9 21 310 67 359 2.00e-25 104
Msa0251640 MtrunA17_Chr5g0402821 28.165 316 197 9 22 315 16 323 2.10e-25 103
Msa0251640 MtrunA17_Chr3g0113081 28.479 309 159 8 12 311 373 628 9.59e-25 104
Msa0251640 MtrunA17_Chr3g0113081 37.500 152 86 2 22 173 185 327 3.14e-24 103
Msa0251640 MtrunA17_Chr3g0113081 35.821 134 79 2 11 144 3 129 3.90e-17 82.0
Msa0251640 MtrunA17_Chr5g0405761 28.428 299 184 7 19 312 47 320 7.27e-24 99.8
Msa0251640 MtrunA17_Chr6g0469501 63.793 58 21 0 264 321 1 58 1.12e-21 86.7
Msa0251640 MtrunA17_Chr1g0176881 30.147 136 94 1 21 156 21 155 2.48e-16 79.7
Msa0251640 MtrunA17_Chr1g0176881 28.966 145 100 2 2 146 175 316 2.90e-14 73.6
Msa0251640 MtrunA17_Chr8g0360271 25.256 293 183 11 33 310 21 292 7.65e-15 73.9
Msa0251640 MtrunA17_Chr1g0156481 22.772 303 204 8 19 311 12 294 7.35e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251640 AT5G05800.1 25.237 317 212 6 6 322 156 447 6.98e-24 101
Msa0251640 AT5G05800.1 34.400 125 81 1 20 144 2 125 1.06e-16 80.9
Msa0251640 AT5G05800.5 25.237 317 212 6 6 322 156 447 6.98e-24 101
Msa0251640 AT5G05800.5 34.400 125 81 1 20 144 2 125 1.06e-16 80.9
Msa0251640 AT5G05800.3 25.237 317 212 6 6 322 156 447 6.98e-24 101
Msa0251640 AT5G05800.3 34.400 125 81 1 20 144 2 125 1.06e-16 80.9
Msa0251640 AT5G05800.2 25.237 317 212 6 6 322 156 447 6.98e-24 101
Msa0251640 AT5G05800.2 34.400 125 81 1 20 144 2 125 1.06e-16 80.9
Msa0251640 AT5G05800.4 25.237 317 212 6 6 322 156 447 6.98e-24 101
Msa0251640 AT5G05800.4 34.400 125 81 1 20 144 2 125 1.06e-16 80.9
Msa0251640 AT3G11290.2 25.566 309 189 8 20 310 163 448 8.97e-19 87.0
Msa0251640 AT3G11290.1 25.566 309 189 8 20 310 163 448 8.97e-19 87.0
Msa0251640 AT2G24960.1 29.927 137 95 1 8 144 155 290 2.71e-16 80.1
Msa0251640 AT2G24960.1 26.667 135 98 1 20 154 10 143 3.07e-11 64.7
Msa0251640 AT2G24960.1 32.432 111 74 1 33 143 542 651 5.77e-11 63.9
Msa0251640 AT2G24960.2 29.927 137 95 1 8 144 155 290 3.08e-16 80.1
Msa0251640 AT2G24960.2 27.972 143 102 1 12 154 314 455 6.94e-13 69.7
Msa0251640 AT2G24960.2 26.667 135 98 1 20 154 10 143 3.64e-11 64.7
Msa0251640 AT2G24960.2 32.432 111 74 1 33 143 519 628 6.43e-11 63.9
Msa0251640 AT3G11310.1 33.566 143 89 2 20 157 171 312 5.16e-13 70.1
Msa0251640 AT2G19220.1 26.019 319 198 12 9 317 149 439 2.96e-11 64.3
Msa0251640 AT4G02210.1 27.673 159 113 2 13 170 2 159 4.30e-11 63.9
Msa0251640 AT4G02210.2 27.673 159 113 2 13 170 2 159 4.30e-11 63.9

Find 76 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGCATGGTATAACTTATT+TGG 0.134716 2_2:-41570186 Msa0251640:CDS
ACAACTGAATTTGGAAATAT+TGG 0.148866 2_2:-41569783 Msa0251640:CDS
GTTGGAGCAACAACTGAATT+TGG 0.213211 2_2:-41569792 Msa0251640:CDS
GGCAGAAAACAAAAGCTAAT+TGG 0.275009 2_2:-41570395 Msa0251640:CDS
AACTTATTTGGGAGAGAAAC+TGG 0.287945 2_2:-41570174 Msa0251640:CDS
TTGGGAGAGAAACTGGATTA+GGG 0.298488 2_2:-41570167 Msa0251640:CDS
TTTGGGAGAGAAACTGGATT+AGG 0.315464 2_2:-41570168 Msa0251640:CDS
GAAATAAACATCTCCCTTGC+AGG 0.323302 2_2:+41569492 None:intergenic
AAACTTTGTGAAAGCATGTT+TGG 0.334075 2_2:-41570355 Msa0251640:CDS
GTCCGGTTAAATTATGAAAT+CGG 0.352053 2_2:+41570265 None:intergenic
TGTATTACATACCAGTTGTT+TGG 0.352266 2_2:+41570095 None:intergenic
CAACTGAATTTGGAAATATT+GGG 0.356640 2_2:-41569782 Msa0251640:CDS
GAGCATGGTATAACTTATTT+GGG 0.363157 2_2:-41570185 Msa0251640:CDS
TTCAAGGATGTAGTGGCTAA+TGG 0.366838 2_2:-41569933 Msa0251640:CDS
CAGAGGAGAAGAGGTTGAAT+TGG 0.373243 2_2:-41569458 Msa0251640:CDS
GTCCGATTTCATAATTTAAC+CGG 0.374307 2_2:-41570267 Msa0251640:CDS
TTGGTCTCCCACCACTCATC+AGG 0.410369 2_2:+41570114 None:intergenic
GCAGAAAACAAAAGCTAATT+GGG 0.414370 2_2:-41570394 Msa0251640:CDS
GTTCCTCCTCACCTAGTGAT+GGG 0.415978 2_2:-41570419 Msa0251640:CDS
GAAAAGTGTGGTTAACTCAT+TGG 0.420206 2_2:+41569953 None:intergenic
AAAAGGGTGGACAAATATTA+GGG 0.422862 2_2:-41570289 Msa0251640:CDS
ATGATCTTTATTTGCATGCT+CGG 0.426517 2_2:-41569539 Msa0251640:CDS
GGTTCCTCCTCACCTAGTGA+TGG 0.438340 2_2:-41570420 Msa0251640:CDS
TTCCTCCTCACCTAGTGATG+GGG 0.476214 2_2:-41570418 Msa0251640:CDS
AGAAGGCTCAACTAAAGAAT+AGG 0.479515 2_2:-41570233 Msa0251640:CDS
TCCTCCTCACCTAGTGATGG+GGG 0.484199 2_2:-41570417 Msa0251640:CDS
GCTGCGGGTAATGCATCTAT+TGG 0.495551 2_2:-41569603 Msa0251640:CDS
GATGAGGCAGTGGCTGTAGA+AGG 0.502147 2_2:-41569840 Msa0251640:CDS
AGCCTTCTCATACTTCAGTC+CGG 0.504703 2_2:+41570248 None:intergenic
CGTACCAACACGTTCTCCCT+TGG 0.505137 2_2:+41570323 None:intergenic
TGCTGATGTTTAAGCCTGCA+AGG 0.517021 2_2:-41569506 Msa0251640:CDS
TGGCTAATGGAGAGTACACT+TGG 0.522261 2_2:-41569920 Msa0251640:CDS
GCAGTGGCTGTAGAAGGATC+TGG 0.527670 2_2:-41569834 Msa0251640:CDS
ATGACAGTCTGAGAAAGGAT+TGG 0.531322 2_2:-41570209 Msa0251640:CDS
CTTCTCCTCTGAACCTCGTA+GGG 0.535159 2_2:+41569470 None:intergenic
GTGGTGGGAGACCAAACAAC+TGG 0.536532 2_2:-41570106 Msa0251640:intron
TAGGTATGACAGTCTGAGAA+AGG 0.543958 2_2:-41570214 Msa0251640:CDS
AGGTTAGTCATGAATGGCAG+TGG 0.548613 2_2:+41569414 None:intergenic
TCACACAGGTTAGTCATGAA+TGG 0.548759 2_2:+41569408 None:intergenic
TATTTCCCTACGAGGTTCAG+AGG 0.555424 2_2:-41569475 Msa0251640:CDS
GGAGAGAAACTGGATTAGGG+TGG 0.557144 2_2:-41570164 Msa0251640:CDS
ATCATTTGAGACTTCATCCA+TGG 0.558263 2_2:+41569557 None:intergenic
GTCAAAAGAGTGGTGAGAAG+AGG 0.562252 2_2:-41569734 Msa0251640:CDS
CATGACTAACCTGTGTGACT+AGG 0.563491 2_2:-41569403 None:intergenic
TACGAGGTTCAGAGGAGAAG+AGG 0.567800 2_2:-41569467 Msa0251640:CDS
CGTTCTCGCAATGATGCTGC+GGG 0.569360 2_2:-41569618 Msa0251640:CDS
ATGTTTGGAGCAAGTCTCCA+AGG 0.570714 2_2:-41570340 Msa0251640:CDS
TACACTTGGGCACCATCATG+TGG 0.573130 2_2:-41569906 Msa0251640:CDS
TCGTTCTCGCAATGATGCTG+CGG 0.583184 2_2:-41569619 Msa0251640:CDS
TGCATCTATTGGTGAAGTGA+TGG 0.591393 2_2:-41569592 Msa0251640:CDS
GCTGATGTTTAAGCCTGCAA+GGG 0.594722 2_2:-41569505 Msa0251640:CDS
TCTTCTCCTCTGAACCTCGT+AGG 0.595412 2_2:+41569469 None:intergenic
GATAGCGAGGATGCAAGTGT+TGG 0.599986 2_2:-41569810 Msa0251640:CDS
GATGGCAATACCCCACATGA+TGG 0.601622 2_2:+41569894 None:intergenic
CCTCCTCACCTAGTGATGGG+GGG 0.608278 2_2:-41570416 Msa0251640:CDS
TGAGAAAGGATTGGAGAGCA+TGG 0.612846 2_2:-41570200 Msa0251640:CDS
GCTACAACAGTGTTGTTCAC+AGG 0.614063 2_2:+41570138 None:intergenic
GTGGTTAACTCATTGGCGGA+TGG 0.619499 2_2:+41569960 None:intergenic
AGAAGGATCTGGCGATAGCG+AGG 0.624952 2_2:-41569823 Msa0251640:CDS
AACCGGACTGAAGTATGAGA+AGG 0.626830 2_2:-41570250 Msa0251640:CDS
ACACTTGGGCACCATCATGT+GGG 0.626839 2_2:-41569905 Msa0251640:CDS
CACTACATCCTTGAAAAGTG+TGG 0.627204 2_2:+41569941 None:intergenic
AAAACTGATGGTCAAAAGAG+TGG 0.632803 2_2:-41569744 Msa0251640:CDS
TTGTAGCACCTGATGAGTGG+TGG 0.632872 2_2:-41570122 Msa0251640:CDS
GGTTAGTCATGAATGGCAGT+GGG 0.638001 2_2:+41569415 None:intergenic
CCCATACATCCTAGTCACAC+AGG 0.638813 2_2:+41569394 None:intergenic
GAGAGAAACTGGATTAGGGT+GGG 0.643865 2_2:-41570163 Msa0251640:CDS
GTCTCCAAGGGAGAACGTGT+TGG 0.644338 2_2:-41570327 Msa0251640:CDS
CACTTGGGCACCATCATGTG+GGG 0.646121 2_2:-41569904 Msa0251640:CDS
TGTTTGGAGCAAGTCTCCAA+GGG 0.647436 2_2:-41570339 Msa0251640:CDS
TGTAGCACCTGATGAGTGGT+GGG 0.651018 2_2:-41570121 Msa0251640:CDS
AAGTGTGGTTAACTCATTGG+CGG 0.655757 2_2:+41569956 None:intergenic
GATGGCTGAGCTTCACACCA+TGG 0.663371 2_2:-41569574 Msa0251640:CDS
GGCTAATGGAGAGTACACTT+GGG 0.684848 2_2:-41569919 Msa0251640:CDS
CTGTTGTAGCACCTGATGAG+TGG 0.705267 2_2:-41570125 Msa0251640:CDS
GAGATGTTTATTTCCCTACG+AGG 0.736446 2_2:-41569483 Msa0251640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTAAATTTTTCATAAAGA+GGG + chr2_2:41569860-41569879 None:intergenic 20.0%
!!! TTCCTAAATTTTTCATAAAG+AGG + chr2_2:41569861-41569880 None:intergenic 20.0%
!! TTATGAAAAATTTAGGAACA+AGG - chr2_2:41569863-41569882 Msa0251640:CDS 20.0%
!! TATGAAAAATTTAGGAACAA+GGG - chr2_2:41569864-41569883 Msa0251640:CDS 20.0%
!!! TCCTAAATTTTTCATAAAGA+GGG + chr2_2:41569860-41569879 None:intergenic 20.0%
!!! TTCCTAAATTTTTCATAAAG+AGG + chr2_2:41569861-41569880 None:intergenic 20.0%
!! TTATGAAAAATTTAGGAACA+AGG - chr2_2:41569863-41569882 Msa0251640:CDS 20.0%
!! TATGAAAAATTTAGGAACAA+GGG - chr2_2:41569864-41569883 Msa0251640:CDS 20.0%
! AATACCAAGAAAAATGTTGT+GGG - chr2_2:41569410-41569429 Msa0251640:CDS 25.0%
! ACCCTCTTTATGAAAAATTT+AGG - chr2_2:41569856-41569875 Msa0251640:CDS 25.0%
! ATGAAAAATTTAGGAACAAG+GGG - chr2_2:41569865-41569884 Msa0251640:CDS 25.0%
! ACAACTGAATTTGGAAATAT+TGG - chr2_2:41570068-41570087 Msa0251640:intron 25.0%
! CAACTGAATTTGGAAATATT+GGG - chr2_2:41570069-41570088 Msa0251640:intron 25.0%
! AATTCTTCACAAAAAACTGA+TGG - chr2_2:41570095-41570114 Msa0251640:intron 25.0%
! AATACCAAGAAAAATGTTGT+GGG - chr2_2:41569410-41569429 Msa0251640:CDS 25.0%
! ACCCTCTTTATGAAAAATTT+AGG - chr2_2:41569856-41569875 Msa0251640:CDS 25.0%
! ATGAAAAATTTAGGAACAAG+GGG - chr2_2:41569865-41569884 Msa0251640:CDS 25.0%
! ACAACTGAATTTGGAAATAT+TGG - chr2_2:41570068-41570087 Msa0251640:intron 25.0%
! CAACTGAATTTGGAAATATT+GGG - chr2_2:41570069-41570088 Msa0251640:intron 25.0%
! AATTCTTCACAAAAAACTGA+TGG - chr2_2:41570095-41570114 Msa0251640:intron 25.0%
GAATACCAAGAAAAATGTTG+TGG - chr2_2:41569409-41569428 Msa0251640:CDS 30.0%
GCAGAAAACAAAAGCTAATT+GGG - chr2_2:41569457-41569476 Msa0251640:CDS 30.0%
! AAACTTTGTGAAAGCATGTT+TGG - chr2_2:41569496-41569515 Msa0251640:CDS 30.0%
! GTACGAGCTTTTCAAAAAAA+GGG - chr2_2:41569546-41569565 Msa0251640:CDS 30.0%
AAAAAGGGTGGACAAATATT+AGG - chr2_2:41569561-41569580 Msa0251640:CDS 30.0%
AAAAGGGTGGACAAATATTA+GGG - chr2_2:41569562-41569581 Msa0251640:CDS 30.0%
GTCCGATTTCATAATTTAAC+CGG - chr2_2:41569584-41569603 Msa0251640:CDS 30.0%
GTCCGGTTAAATTATGAAAT+CGG + chr2_2:41569589-41569608 None:intergenic 30.0%
AGAGCATGGTATAACTTATT+TGG - chr2_2:41569665-41569684 Msa0251640:CDS 30.0%
GAGCATGGTATAACTTATTT+GGG - chr2_2:41569666-41569685 Msa0251640:CDS 30.0%
TGTATTACATACCAGTTGTT+TGG + chr2_2:41569759-41569778 None:intergenic 30.0%
AACACGAGTATACATATCTA+AGG + chr2_2:41569802-41569821 None:intergenic 30.0%
! TCATCATTTTCAAACACAGA+TGG + chr2_2:41569978-41569997 None:intergenic 30.0%
! TGATAATGATGATGATGATG+AGG - chr2_2:41569995-41570014 Msa0251640:CDS 30.0%
! ATGATCTTTATTTGCATGCT+CGG - chr2_2:41570312-41570331 Msa0251640:CDS 30.0%
GAATACCAAGAAAAATGTTG+TGG - chr2_2:41569409-41569428 Msa0251640:CDS 30.0%
GCAGAAAACAAAAGCTAATT+GGG - chr2_2:41569457-41569476 Msa0251640:CDS 30.0%
! AAACTTTGTGAAAGCATGTT+TGG - chr2_2:41569496-41569515 Msa0251640:CDS 30.0%
! GTACGAGCTTTTCAAAAAAA+GGG - chr2_2:41569546-41569565 Msa0251640:CDS 30.0%
AAAAAGGGTGGACAAATATT+AGG - chr2_2:41569561-41569580 Msa0251640:CDS 30.0%
AAAAGGGTGGACAAATATTA+GGG - chr2_2:41569562-41569581 Msa0251640:CDS 30.0%
GTCCGATTTCATAATTTAAC+CGG - chr2_2:41569584-41569603 Msa0251640:CDS 30.0%
GTCCGGTTAAATTATGAAAT+CGG + chr2_2:41569589-41569608 None:intergenic 30.0%
AGAGCATGGTATAACTTATT+TGG - chr2_2:41569665-41569684 Msa0251640:CDS 30.0%
GAGCATGGTATAACTTATTT+GGG - chr2_2:41569666-41569685 Msa0251640:CDS 30.0%
TGTATTACATACCAGTTGTT+TGG + chr2_2:41569759-41569778 None:intergenic 30.0%
AACACGAGTATACATATCTA+AGG + chr2_2:41569802-41569821 None:intergenic 30.0%
! TCATCATTTTCAAACACAGA+TGG + chr2_2:41569978-41569997 None:intergenic 30.0%
! TGATAATGATGATGATGATG+AGG - chr2_2:41569995-41570014 Msa0251640:CDS 30.0%
! ATGATCTTTATTTGCATGCT+CGG - chr2_2:41570312-41570331 Msa0251640:CDS 30.0%
GGCAGAAAACAAAAGCTAAT+TGG - chr2_2:41569456-41569475 Msa0251640:CDS 35.0%
! GGTACGAGCTTTTCAAAAAA+AGG - chr2_2:41569545-41569564 Msa0251640:CDS 35.0%
AGAAGGCTCAACTAAAGAAT+AGG - chr2_2:41569618-41569637 Msa0251640:CDS 35.0%
AACTTATTTGGGAGAGAAAC+TGG - chr2_2:41569677-41569696 Msa0251640:CDS 35.0%
GATGTGAGTTATGAAAATGC+AGG - chr2_2:41569830-41569849 Msa0251640:CDS 35.0%
! GAAAAGTGTGGTTAACTCAT+TGG + chr2_2:41569901-41569920 None:intergenic 35.0%
! TGAGTTAACCACACTTTTCA+AGG - chr2_2:41569902-41569921 Msa0251640:CDS 35.0%
AAAACTGATGGTCAAAAGAG+TGG - chr2_2:41570107-41570126 Msa0251640:CDS 35.0%
!!! GCACTTGCTTTTTTCTTACT+TGG + chr2_2:41570167-41570186 None:intergenic 35.0%
! ATCATTTGAGACTTCATCCA+TGG + chr2_2:41570297-41570316 None:intergenic 35.0%
GGCAGAAAACAAAAGCTAAT+TGG - chr2_2:41569456-41569475 Msa0251640:CDS 35.0%
! GGTACGAGCTTTTCAAAAAA+AGG - chr2_2:41569545-41569564 Msa0251640:CDS 35.0%
AGAAGGCTCAACTAAAGAAT+AGG - chr2_2:41569618-41569637 Msa0251640:CDS 35.0%
AACTTATTTGGGAGAGAAAC+TGG - chr2_2:41569677-41569696 Msa0251640:CDS 35.0%
GATGTGAGTTATGAAAATGC+AGG - chr2_2:41569830-41569849 Msa0251640:CDS 35.0%
! GAAAAGTGTGGTTAACTCAT+TGG + chr2_2:41569901-41569920 None:intergenic 35.0%
! TGAGTTAACCACACTTTTCA+AGG - chr2_2:41569902-41569921 Msa0251640:CDS 35.0%
AAAACTGATGGTCAAAAGAG+TGG - chr2_2:41570107-41570126 Msa0251640:CDS 35.0%
!!! GCACTTGCTTTTTTCTTACT+TGG + chr2_2:41570167-41570186 None:intergenic 35.0%
! ATCATTTGAGACTTCATCCA+TGG + chr2_2:41570297-41570316 None:intergenic 35.0%
! GGAACCCACAACATTTTTCT+TGG + chr2_2:41569417-41569436 None:intergenic 40.0%
! CGAGCTTTTCAAAAAAAGGG+TGG - chr2_2:41569549-41569568 Msa0251640:CDS 40.0%
TAGGTATGACAGTCTGAGAA+AGG - chr2_2:41569637-41569656 Msa0251640:CDS 40.0%
ATGACAGTCTGAGAAAGGAT+TGG - chr2_2:41569642-41569661 Msa0251640:CDS 40.0%
TTTGGGAGAGAAACTGGATT+AGG - chr2_2:41569683-41569702 Msa0251640:CDS 40.0%
TTGGGAGAGAAACTGGATTA+GGG - chr2_2:41569684-41569703 Msa0251640:CDS 40.0%
AAGTGTGGTTAACTCATTGG+CGG + chr2_2:41569898-41569917 None:intergenic 40.0%
CACTACATCCTTGAAAAGTG+TGG + chr2_2:41569913-41569932 None:intergenic 40.0%
!! CACACTTTTCAAGGATGTAG+TGG - chr2_2:41569911-41569930 Msa0251640:CDS 40.0%
TTCAAGGATGTAGTGGCTAA+TGG - chr2_2:41569918-41569937 Msa0251640:CDS 40.0%
GTTGGAGCAACAACTGAATT+TGG - chr2_2:41570059-41570078 Msa0251640:intron 40.0%
TGCATCTATTGGTGAAGTGA+TGG - chr2_2:41570259-41570278 Msa0251640:CDS 40.0%
GAAATAAACATCTCCCTTGC+AGG + chr2_2:41570362-41570381 None:intergenic 40.0%
GAGATGTTTATTTCCCTACG+AGG - chr2_2:41570368-41570387 Msa0251640:CDS 40.0%
! TCACACAGGTTAGTCATGAA+TGG + chr2_2:41570446-41570465 None:intergenic 40.0%
! GGAACCCACAACATTTTTCT+TGG + chr2_2:41569417-41569436 None:intergenic 40.0%
! CGAGCTTTTCAAAAAAAGGG+TGG - chr2_2:41569549-41569568 Msa0251640:CDS 40.0%
TAGGTATGACAGTCTGAGAA+AGG - chr2_2:41569637-41569656 Msa0251640:CDS 40.0%
ATGACAGTCTGAGAAAGGAT+TGG - chr2_2:41569642-41569661 Msa0251640:CDS 40.0%
TTTGGGAGAGAAACTGGATT+AGG - chr2_2:41569683-41569702 Msa0251640:CDS 40.0%
TTGGGAGAGAAACTGGATTA+GGG - chr2_2:41569684-41569703 Msa0251640:CDS 40.0%
AAGTGTGGTTAACTCATTGG+CGG + chr2_2:41569898-41569917 None:intergenic 40.0%
CACTACATCCTTGAAAAGTG+TGG + chr2_2:41569913-41569932 None:intergenic 40.0%
!! CACACTTTTCAAGGATGTAG+TGG - chr2_2:41569911-41569930 Msa0251640:CDS 40.0%
TTCAAGGATGTAGTGGCTAA+TGG - chr2_2:41569918-41569937 Msa0251640:CDS 40.0%
GTTGGAGCAACAACTGAATT+TGG - chr2_2:41570059-41570078 Msa0251640:intron 40.0%
TGCATCTATTGGTGAAGTGA+TGG - chr2_2:41570259-41570278 Msa0251640:CDS 40.0%
GAAATAAACATCTCCCTTGC+AGG + chr2_2:41570362-41570381 None:intergenic 40.0%
GAGATGTTTATTTCCCTACG+AGG - chr2_2:41570368-41570387 Msa0251640:CDS 40.0%
! TCACACAGGTTAGTCATGAA+TGG + chr2_2:41570446-41570465 None:intergenic 40.0%
! ATGTTTGGAGCAAGTCTCCA+AGG - chr2_2:41569511-41569530 Msa0251640:CDS 45.0%
! TGTTTGGAGCAAGTCTCCAA+GGG - chr2_2:41569512-41569531 Msa0251640:CDS 45.0%
AACCGGACTGAAGTATGAGA+AGG - chr2_2:41569601-41569620 Msa0251640:CDS 45.0%
AGCCTTCTCATACTTCAGTC+CGG + chr2_2:41569606-41569625 None:intergenic 45.0%
TGAGAAAGGATTGGAGAGCA+TGG - chr2_2:41569651-41569670 Msa0251640:CDS 45.0%
! GAGAGAAACTGGATTAGGGT+GGG - chr2_2:41569688-41569707 Msa0251640:CDS 45.0%
! GCTACAACAGTGTTGTTCAC+AGG + chr2_2:41569716-41569735 None:intergenic 45.0%
! TGGCTAATGGAGAGTACACT+TGG - chr2_2:41569931-41569950 Msa0251640:CDS 45.0%
! GGCTAATGGAGAGTACACTT+GGG - chr2_2:41569932-41569951 Msa0251640:CDS 45.0%
! TGATGATGATGATGAGGCAG+TGG - chr2_2:41570001-41570020 Msa0251640:CDS 45.0%
GTCAAAAGAGTGGTGAGAAG+AGG - chr2_2:41570117-41570136 Msa0251640:CDS 45.0%
TGCTGATGTTTAAGCCTGCA+AGG - chr2_2:41570345-41570364 Msa0251640:CDS 45.0%
GCTGATGTTTAAGCCTGCAA+GGG - chr2_2:41570346-41570365 Msa0251640:CDS 45.0%
TATTTCCCTACGAGGTTCAG+AGG - chr2_2:41570376-41570395 Msa0251640:CDS 45.0%
CAGAGGAGAAGAGGTTGAAT+TGG - chr2_2:41570393-41570412 Msa0251640:CDS 45.0%
! GGTTAGTCATGAATGGCAGT+GGG + chr2_2:41570439-41570458 None:intergenic 45.0%
! AGGTTAGTCATGAATGGCAG+TGG + chr2_2:41570440-41570459 None:intergenic 45.0%
! ATGTTTGGAGCAAGTCTCCA+AGG - chr2_2:41569511-41569530 Msa0251640:CDS 45.0%
! TGTTTGGAGCAAGTCTCCAA+GGG - chr2_2:41569512-41569531 Msa0251640:CDS 45.0%
AACCGGACTGAAGTATGAGA+AGG - chr2_2:41569601-41569620 Msa0251640:CDS 45.0%
AGCCTTCTCATACTTCAGTC+CGG + chr2_2:41569606-41569625 None:intergenic 45.0%
TGAGAAAGGATTGGAGAGCA+TGG - chr2_2:41569651-41569670 Msa0251640:CDS 45.0%
! GAGAGAAACTGGATTAGGGT+GGG - chr2_2:41569688-41569707 Msa0251640:CDS 45.0%
! GCTACAACAGTGTTGTTCAC+AGG + chr2_2:41569716-41569735 None:intergenic 45.0%
! TGGCTAATGGAGAGTACACT+TGG - chr2_2:41569931-41569950 Msa0251640:CDS 45.0%
! GGCTAATGGAGAGTACACTT+GGG - chr2_2:41569932-41569951 Msa0251640:CDS 45.0%
! TGATGATGATGATGAGGCAG+TGG - chr2_2:41570001-41570020 Msa0251640:CDS 45.0%
GTCAAAAGAGTGGTGAGAAG+AGG - chr2_2:41570117-41570136 Msa0251640:CDS 45.0%
TGCTGATGTTTAAGCCTGCA+AGG - chr2_2:41570345-41570364 Msa0251640:CDS 45.0%
GCTGATGTTTAAGCCTGCAA+GGG - chr2_2:41570346-41570365 Msa0251640:CDS 45.0%
TATTTCCCTACGAGGTTCAG+AGG - chr2_2:41570376-41570395 Msa0251640:CDS 45.0%
CAGAGGAGAAGAGGTTGAAT+TGG - chr2_2:41570393-41570412 Msa0251640:CDS 45.0%
! GGTTAGTCATGAATGGCAGT+GGG + chr2_2:41570439-41570458 None:intergenic 45.0%
! AGGTTAGTCATGAATGGCAG+TGG + chr2_2:41570440-41570459 None:intergenic 45.0%
GTTCCTCCTCACCTAGTGAT+GGG - chr2_2:41569432-41569451 Msa0251640:CDS 50.0%
TTCCTCCTCACCTAGTGATG+GGG - chr2_2:41569433-41569452 Msa0251640:CDS 50.0%
! GGAGAGAAACTGGATTAGGG+TGG - chr2_2:41569687-41569706 Msa0251640:CDS 50.0%
CTGTTGTAGCACCTGATGAG+TGG - chr2_2:41569726-41569745 Msa0251640:CDS 50.0%
TTGTAGCACCTGATGAGTGG+TGG - chr2_2:41569729-41569748 Msa0251640:CDS 50.0%
TGTAGCACCTGATGAGTGGT+GGG - chr2_2:41569730-41569749 Msa0251640:CDS 50.0%
GTGGTTAACTCATTGGCGGA+TGG + chr2_2:41569894-41569913 None:intergenic 50.0%
TACACTTGGGCACCATCATG+TGG - chr2_2:41569945-41569964 Msa0251640:CDS 50.0%
ACACTTGGGCACCATCATGT+GGG - chr2_2:41569946-41569965 Msa0251640:CDS 50.0%
GATGGCAATACCCCACATGA+TGG + chr2_2:41569960-41569979 None:intergenic 50.0%
GATAGCGAGGATGCAAGTGT+TGG - chr2_2:41570041-41570060 Msa0251640:intron 50.0%
TCGTTCTCGCAATGATGCTG+CGG - chr2_2:41570232-41570251 Msa0251640:CDS 50.0%
GCTGCGGGTAATGCATCTAT+TGG - chr2_2:41570248-41570267 Msa0251640:CDS 50.0%
CTTCTCCTCTGAACCTCGTA+GGG + chr2_2:41570384-41570403 None:intergenic 50.0%
TCTTCTCCTCTGAACCTCGT+AGG + chr2_2:41570385-41570404 None:intergenic 50.0%
TACGAGGTTCAGAGGAGAAG+AGG - chr2_2:41570384-41570403 Msa0251640:CDS 50.0%
GTTCCTCCTCACCTAGTGAT+GGG - chr2_2:41569432-41569451 Msa0251640:CDS 50.0%
TTCCTCCTCACCTAGTGATG+GGG - chr2_2:41569433-41569452 Msa0251640:CDS 50.0%
! GGAGAGAAACTGGATTAGGG+TGG - chr2_2:41569687-41569706 Msa0251640:CDS 50.0%
CTGTTGTAGCACCTGATGAG+TGG - chr2_2:41569726-41569745 Msa0251640:CDS 50.0%
TTGTAGCACCTGATGAGTGG+TGG - chr2_2:41569729-41569748 Msa0251640:CDS 50.0%
TGTAGCACCTGATGAGTGGT+GGG - chr2_2:41569730-41569749 Msa0251640:CDS 50.0%
GTGGTTAACTCATTGGCGGA+TGG + chr2_2:41569894-41569913 None:intergenic 50.0%
TACACTTGGGCACCATCATG+TGG - chr2_2:41569945-41569964 Msa0251640:CDS 50.0%
ACACTTGGGCACCATCATGT+GGG - chr2_2:41569946-41569965 Msa0251640:CDS 50.0%
GATGGCAATACCCCACATGA+TGG + chr2_2:41569960-41569979 None:intergenic 50.0%
GATAGCGAGGATGCAAGTGT+TGG - chr2_2:41570041-41570060 Msa0251640:intron 50.0%
TCGTTCTCGCAATGATGCTG+CGG - chr2_2:41570232-41570251 Msa0251640:CDS 50.0%
GCTGCGGGTAATGCATCTAT+TGG - chr2_2:41570248-41570267 Msa0251640:CDS 50.0%
CTTCTCCTCTGAACCTCGTA+GGG + chr2_2:41570384-41570403 None:intergenic 50.0%
TCTTCTCCTCTGAACCTCGT+AGG + chr2_2:41570385-41570404 None:intergenic 50.0%
TACGAGGTTCAGAGGAGAAG+AGG - chr2_2:41570384-41570403 Msa0251640:CDS 50.0%
GGTTCCTCCTCACCTAGTGA+TGG - chr2_2:41569431-41569450 Msa0251640:CDS 55.0%
TCCTCCTCACCTAGTGATGG+GGG - chr2_2:41569434-41569453 Msa0251640:CDS 55.0%
! GTTTTCTGCCCCCCATCACT+AGG + chr2_2:41569446-41569465 None:intergenic 55.0%
GTCTCCAAGGGAGAACGTGT+TGG - chr2_2:41569524-41569543 Msa0251640:CDS 55.0%
CGTACCAACACGTTCTCCCT+TGG + chr2_2:41569531-41569550 None:intergenic 55.0%
TTGGTCTCCCACCACTCATC+AGG + chr2_2:41569740-41569759 None:intergenic 55.0%
! GTGGTGGGAGACCAAACAAC+TGG - chr2_2:41569745-41569764 Msa0251640:CDS 55.0%
CACTTGGGCACCATCATGTG+GGG - chr2_2:41569947-41569966 Msa0251640:CDS 55.0%
GATGAGGCAGTGGCTGTAGA+AGG - chr2_2:41570011-41570030 Msa0251640:intron 55.0%
GCAGTGGCTGTAGAAGGATC+TGG - chr2_2:41570017-41570036 Msa0251640:intron 55.0%
AGAAGGATCTGGCGATAGCG+AGG - chr2_2:41570028-41570047 Msa0251640:intron 55.0%
CGTTCTCGCAATGATGCTGC+GGG - chr2_2:41570233-41570252 Msa0251640:CDS 55.0%
GATGGCTGAGCTTCACACCA+TGG - chr2_2:41570277-41570296 Msa0251640:CDS 55.0%
GGTTCCTCCTCACCTAGTGA+TGG - chr2_2:41569431-41569450 Msa0251640:CDS 55.0%
TCCTCCTCACCTAGTGATGG+GGG - chr2_2:41569434-41569453 Msa0251640:CDS 55.0%
! GTTTTCTGCCCCCCATCACT+AGG + chr2_2:41569446-41569465 None:intergenic 55.0%
GTCTCCAAGGGAGAACGTGT+TGG - chr2_2:41569524-41569543 Msa0251640:CDS 55.0%
CGTACCAACACGTTCTCCCT+TGG + chr2_2:41569531-41569550 None:intergenic 55.0%
TTGGTCTCCCACCACTCATC+AGG + chr2_2:41569740-41569759 None:intergenic 55.0%
! GTGGTGGGAGACCAAACAAC+TGG - chr2_2:41569745-41569764 Msa0251640:CDS 55.0%
CACTTGGGCACCATCATGTG+GGG - chr2_2:41569947-41569966 Msa0251640:CDS 55.0%
GATGAGGCAGTGGCTGTAGA+AGG - chr2_2:41570011-41570030 Msa0251640:intron 55.0%
GCAGTGGCTGTAGAAGGATC+TGG - chr2_2:41570017-41570036 Msa0251640:intron 55.0%
AGAAGGATCTGGCGATAGCG+AGG - chr2_2:41570028-41570047 Msa0251640:intron 55.0%
CGTTCTCGCAATGATGCTGC+GGG - chr2_2:41570233-41570252 Msa0251640:CDS 55.0%
GATGGCTGAGCTTCACACCA+TGG - chr2_2:41570277-41570296 Msa0251640:CDS 55.0%
! CCTCCTCACCTAGTGATGGG+GGG - chr2_2:41569435-41569454 Msa0251640:CDS 60.0%
! CCTCCTCACCTAGTGATGGG+GGG - chr2_2:41569435-41569454 Msa0251640:CDS 60.0%
CCCCCCATCACTAGGTGAGG+AGG + chr2_2:41569438-41569457 None:intergenic 65.0%
CTGCCCCCCATCACTAGGTG+AGG + chr2_2:41569441-41569460 None:intergenic 65.0%
CCCCCCATCACTAGGTGAGG+AGG + chr2_2:41569438-41569457 None:intergenic 65.0%
CTGCCCCCCATCACTAGGTG+AGG + chr2_2:41569441-41569460 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 41569404 41570469 41569404 ID=Msa0251640;Name=Msa0251640
chr2_2 mRNA 41569404 41570469 41569404 ID=Msa0251640-mRNA-1;Parent=Msa0251640;Name=Msa0251640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326
chr2_2 exon 41570107 41570469 41570107 ID=Msa0251640-mRNA-1:exon:13053;Parent=Msa0251640-mRNA-1
chr2_2 exon 41569404 41570021 41569404 ID=Msa0251640-mRNA-1:exon:13052;Parent=Msa0251640-mRNA-1
chr2_2 CDS 41570107 41570469 41570107 ID=Msa0251640-mRNA-1:cds;Parent=Msa0251640-mRNA-1
chr2_2 CDS 41569404 41570021 41569404 ID=Msa0251640-mRNA-1:cds;Parent=Msa0251640-mRNA-1
Gene Sequence

>Msa0251640

ATGGTGAATACCAAGAAAAATGTTGTGGGTTCCTCCTCACCTAGTGATGGGGGGCAGAAAACAAAAGCTAATTGGGATTATAAGTCAACTGAAAACTTTGTGAAAGCATGTTTGGAGCAAGTCTCCAAGGGAGAACGTGTTGGTACGAGCTTTTCAAAAAAAGGGTGGACAAATATTAGGGTCCGATTTCATAATTTAACCGGACTGAAGTATGAGAAGGCTCAACTAAAGAATAGGTATGACAGTCTGAGAAAGGATTGGAGAGCATGGTATAACTTATTTGGGAGAGAAACTGGATTAGGGTGGGATCCTGTGAACAACACTGTTGTAGCACCTGATGAGTGGTGGGAGACCAAACAACTGGAAAACCCTCTTTATGAAAAATTTAGGAACAAGGGGCTTCCATCCGCCAATGAGTTAACCACACTTTTCAAGGATGTAGTGGCTAATGGAGAGTACACTTGGGCACCATCATGTGGGGTATTGCCATCTGTGTTTGAAAATGATGATAATGATGATGATGATGAGGCAGTGGCTGTAGAAGGATCTGGCGATAGCGAGGATGCAAGTGTTGGAGCAACAACTGAATTTGGAAATATTGGGTTGAATTCTTCACAAAAAACTGATGGTCAAAAGAGTGGTGAGAAGAGGAAAAGAGCTGTTAGAGCAGACAAGCCAAGTAAGAAAAAAGCAAGTGCATCATCAAAGATAGCTGAAGCTGTTAGTTTAATTGCAGAGACATGTCGTTCTCGCAATGATGCTGCGGGTAATGCATCTATTGGTGAAGTGATGGCTGAGCTTCACACCATGGATGAAGTCTCAAATGATCTTTATTTGCATGCTCGGTGTTGCAACTTGCTGATGTTTAAGCCTGCAAGGGAGATGTTTATTTCCCTACGAGGTTCAGAGGAGAAGAGGTTGAATTGGCTTAAGCATACAATTGATAACCCACTGCCATTCATGACTAACCTGTGTGACTAG

Protein sequence

>Msa0251640

MVNTKKNVVGSSSPSDGGQKTKANWDYKSTENFVKACLEQVSKGERVGTSFSKKGWTNIRVRFHNLTGLKYEKAQLKNRYDSLRKDWRAWYNLFGRETGLGWDPVNNTVVAPDEWWETKQLENPLYEKFRNKGLPSANELTTLFKDVVANGEYTWAPSCGVLPSVFENDDNDDDDEAVAVEGSGDSEDASVGATTEFGNIGLNSSQKTDGQKSGEKRKRAVRADKPSKKKASASSKIAEAVSLIAETCRSRNDAAGNASIGEVMAELHTMDEVSNDLYLHARCCNLLMFKPAREMFISLRGSEEKRLNWLKHTIDNPLPFMTNLCD*