Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645300 | XP_003589014.1 | 91.304 | 322 | 27 | 1 | 1 | 322 | 1 | 321 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645300 | sp|Q9FFJ8|LIMYB_ARATH | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.12e-22 | 101 |
| Msa0645300 | sp|Q9FFJ8|LIMYB_ARATH | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.17e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0645300 | 0.809867 | 1.530596e-50 | -8.615850e-47 |
| Msa0021210 | Msa0645300 | 0.805177 | 1.513755e-49 | -8.615850e-47 |
| Msa0031520 | Msa0645300 | 0.895399 | 9.949270e-76 | -8.615850e-47 |
| Msa0042920 | Msa0645300 | 0.820409 | 6.966004e-53 | -8.615850e-47 |
| Msa0044330 | Msa0645300 | 0.822220 | 2.660951e-53 | -8.615850e-47 |
| Msa0089820 | Msa0645300 | 0.808541 | 2.943731e-50 | -8.615850e-47 |
| Msa0114430 | Msa0645300 | 0.815088 | 1.105613e-51 | -8.615850e-47 |
| Msa0602980 | Msa0645300 | 0.924830 | 4.169100e-90 | -8.615850e-47 |
| Msa0608160 | Msa0645300 | 0.808352 | 3.230174e-50 | -8.615850e-47 |
| Msa0615010 | Msa0645300 | 0.817981 | 2.486809e-52 | -8.615850e-47 |
| Msa0632740 | Msa0645300 | 0.805831 | 1.104129e-49 | -8.615850e-47 |
| Msa0645300 | Msa0648080 | 0.810885 | 9.227497e-51 | -8.615850e-47 |
| Msa0645300 | Msa0650630 | 0.824672 | 7.110866e-54 | -8.615850e-47 |
| Msa0645300 | Msa0652940 | 0.800005 | 1.765733e-48 | -8.615850e-47 |
| Msa0645300 | Msa0672690 | 0.808360 | 3.218125e-50 | -8.615850e-47 |
| Msa0645300 | Msa0701010 | 0.832750 | 7.911835e-56 | -8.615850e-47 |
| Msa0645300 | Msa0703780 | 0.820756 | 5.797186e-53 | -8.615850e-47 |
| Msa0645300 | Msa0731940 | 0.822442 | 2.363803e-53 | -8.615850e-47 |
| Msa0645300 | Msa0745260 | -0.804461 | 2.136887e-49 | -8.615850e-47 |
| Msa0645300 | Msa0748970 | 0.809053 | 2.288538e-50 | -8.615850e-47 |
| Msa0645300 | Msa0755180 | 0.844588 | 6.889864e-59 | -8.615850e-47 |
| Msa0645300 | Msa0766630 | 0.808253 | 3.392218e-50 | -8.615850e-47 |
| Msa0645300 | Msa0767760 | 0.816628 | 5.014169e-52 | -8.615850e-47 |
| Msa0645300 | Msa0768290 | 0.815498 | 8.965472e-52 | -8.615850e-47 |
| Msa0645300 | Msa0768310 | 0.819040 | 1.430814e-52 | -8.615850e-47 |
| Msa0645300 | Msa0768370 | 0.833897 | 4.096596e-56 | -8.615850e-47 |
| Msa0645300 | Msa0773180 | 0.858774 | 6.539152e-63 | -8.615850e-47 |
| Msa0645300 | Msa0784290 | 0.827199 | 1.785184e-54 | -8.615850e-47 |
| Msa0645300 | Msa0784300 | 0.802702 | 4.949044e-49 | -8.615850e-47 |
| Msa0645300 | Msa0804810 | 0.841308 | 5.142093e-58 | -8.615850e-47 |
| Msa0645300 | Msa0810220 | 0.804853 | 1.769721e-49 | -8.615850e-47 |
| Msa0645300 | Msa0817460 | 0.804973 | 1.670558e-49 | -8.615850e-47 |
| Msa0645300 | Msa0820730 | 0.803544 | 3.313687e-49 | -8.615850e-47 |
| Msa0645300 | Msa0820850 | 0.827183 | 1.801266e-54 | -8.615850e-47 |
| Msa0645300 | Msa0824590 | 0.818005 | 2.455764e-52 | -8.615850e-47 |
| Msa0645300 | Msa0831850 | 0.822414 | 2.399165e-53 | -8.615850e-47 |
| Msa0645300 | Msa0832340 | 0.825052 | 5.782952e-54 | -8.615850e-47 |
| Msa0645300 | Msa0844420 | 0.816936 | 4.277067e-52 | -8.615850e-47 |
| Msa0645300 | Msa0844450 | 0.805523 | 1.281461e-49 | -8.615850e-47 |
| Msa0645300 | Msa0844490 | 0.862588 | 4.556681e-64 | -8.615850e-47 |
| Msa0645300 | Msa0848990 | 0.825910 | 3.623120e-54 | -8.615850e-47 |
| Msa0645300 | Msa0849030 | 0.822725 | 2.031849e-53 | -8.615850e-47 |
| Msa0645300 | Msa0853520 | 0.809564 | 1.778314e-50 | -8.615850e-47 |
| Msa0645300 | Msa0857640 | 0.820242 | 7.607117e-53 | -8.615850e-47 |
| Msa0645300 | Msa0861130 | 0.823625 | 1.252718e-53 | -8.615850e-47 |
| Msa0645300 | Msa0864070 | 0.821963 | 3.052534e-53 | -8.615850e-47 |
| Msa0645300 | Msa0877250 | 0.838971 | 2.094039e-57 | -8.615850e-47 |
| Msa0645300 | Msa0894710 | 0.808014 | 3.813735e-50 | -8.615850e-47 |
| Msa0645300 | Msa0896840 | 0.806883 | 6.624158e-50 | -8.615850e-47 |
| Msa0645300 | Msa0897330 | 0.838366 | 3.000856e-57 | -8.615850e-47 |
| Msa0645300 | Msa0899430 | 0.863601 | 2.215634e-64 | -8.615850e-47 |
| Msa0645300 | Msa0899450 | 0.863198 | 2.954722e-64 | -8.615850e-47 |
| Msa0645300 | Msa0901070 | 0.807366 | 5.236417e-50 | -8.615850e-47 |
| Msa0645300 | Msa0907950 | 0.801308 | 9.574345e-49 | -8.615850e-47 |
| Msa0645300 | Msa0914270 | 0.845087 | 5.052449e-59 | -8.615850e-47 |
| Msa0645300 | Msa0914760 | 0.820569 | 6.398723e-53 | -8.615850e-47 |
| Msa0645300 | Msa0927380 | 0.861098 | 1.302210e-63 | -8.615850e-47 |
| Msa0645300 | Msa0931520 | 0.809325 | 2.001178e-50 | -8.615850e-47 |
| Msa0645300 | Msa0935910 | 0.809504 | 1.831781e-50 | -8.615850e-47 |
| Msa0645300 | Msa0936300 | 0.823538 | 1.312294e-53 | -8.615850e-47 |
| Msa0645300 | Msa0948320 | 0.925855 | 1.041049e-90 | -8.615850e-47 |
| Msa0645300 | Msa0952720 | 0.811608 | 6.431066e-51 | -8.615850e-47 |
| Msa0645300 | Msa0953120 | 0.805680 | 1.187811e-49 | -8.615850e-47 |
| Msa0645300 | Msa0958550 | 0.861873 | 7.555777e-64 | -8.615850e-47 |
| Msa0645300 | Msa0960390 | 0.801343 | 9.416777e-49 | -8.615850e-47 |
| Msa0645300 | Msa0964900 | 0.846178 | 2.556991e-59 | -8.615850e-47 |
| Msa0645300 | Msa0966750 | 0.819739 | 9.912524e-53 | -8.615850e-47 |
| Msa0645300 | Msa0967280 | 0.802352 | 5.843310e-49 | -8.615850e-47 |
| Msa0645300 | Msa0969520 | 0.806595 | 7.621562e-50 | -8.615850e-47 |
| Msa0645300 | Msa0969810 | 0.802175 | 6.354694e-49 | -8.615850e-47 |
| Msa0645300 | Msa0973100 | 0.832436 | 9.465147e-56 | -8.615850e-47 |
| Msa0645300 | Msa0974070 | 0.813752 | 2.183610e-51 | -8.615850e-47 |
| Msa0645300 | Msa0974080 | 0.865363 | 6.236090e-65 | -8.615850e-47 |
| Msa0645300 | Msa0976670 | 0.833982 | 3.900747e-56 | -8.615850e-47 |
| Msa0645300 | Msa1000880 | 0.800664 | 1.296262e-48 | -8.615850e-47 |
| Msa0645300 | Msa1000890 | 0.839374 | 1.646817e-57 | -8.615850e-47 |
| Msa0645300 | Msa1000900 | 0.830032 | 3.690579e-55 | -8.615850e-47 |
| Msa0645300 | Msa1001390 | 0.818235 | 2.178487e-52 | -8.615850e-47 |
| Msa0645300 | Msa1002850 | 0.818670 | 1.736652e-52 | -8.615850e-47 |
| Msa0645300 | Msa1014540 | 0.809586 | 1.758381e-50 | -8.615850e-47 |
| Msa0645300 | Msa1023950 | 0.829062 | 6.352208e-55 | -8.615850e-47 |
| Msa0645300 | Msa1036610 | 0.807210 | 5.648469e-50 | -8.615850e-47 |
| Msa0645300 | Msa1054990 | 0.805115 | 1.559912e-49 | -8.615850e-47 |
| Msa0645300 | Msa1065570 | 0.800365 | 1.491331e-48 | -8.615850e-47 |
| Msa0645300 | Msa1075220 | -0.806941 | 6.439844e-50 | -8.615850e-47 |
| Msa0645300 | Msa1075540 | 0.810622 | 1.052064e-50 | -8.615850e-47 |
| Msa0645300 | Msa1075650 | 0.802645 | 5.084960e-49 | -8.615850e-47 |
| Msa0645300 | Msa1076960 | 0.800463 | 1.424077e-48 | -8.615850e-47 |
| Msa0645300 | Msa1082580 | 0.807354 | 5.265316e-50 | -8.615850e-47 |
| Msa0645300 | Msa1098250 | 0.805494 | 1.298962e-49 | -8.615850e-47 |
| Msa0645300 | Msa1103980 | 0.804323 | 2.283060e-49 | -8.615850e-47 |
| Msa0645300 | Msa1111870 | 0.828197 | 1.028017e-54 | -8.615850e-47 |
| Msa0645300 | Msa1113170 | 0.836172 | 1.093686e-56 | -8.615850e-47 |
| Msa0645300 | Msa1115870 | 0.813945 | 1.979057e-51 | -8.615850e-47 |
| Msa0645300 | Msa1117150 | 0.800149 | 1.650045e-48 | -8.615850e-47 |
| Msa0645300 | Msa1120610 | 0.807558 | 4.765982e-50 | -8.615850e-47 |
| Msa0645300 | Msa1120740 | 0.802999 | 4.298126e-49 | -8.615850e-47 |
| Msa0645300 | Msa1121480 | 0.851290 | 9.772757e-61 | -8.615850e-47 |
| Msa0645300 | Msa1121490 | 0.849815 | 2.537837e-60 | -8.615850e-47 |
| Msa0645300 | Msa1122860 | 0.801528 | 8.631162e-49 | -8.615850e-47 |
| Msa0645300 | Msa1137570 | 0.838730 | 2.417900e-57 | -8.615850e-47 |
| Msa0645300 | Msa1142670 | 0.813179 | 2.917384e-51 | -8.615850e-47 |
| Msa0645300 | Msa1144450 | 0.802911 | 4.480400e-49 | -8.615850e-47 |
| Msa0645300 | Msa1162550 | -0.810467 | 1.136272e-50 | -8.615850e-47 |
| Msa0645300 | Msa1174040 | 0.808002 | 3.835351e-50 | -8.615850e-47 |
| Msa0645300 | Msa1177560 | 0.813635 | 2.316779e-51 | -8.615850e-47 |
| Msa0645300 | Msa1184420 | 0.805408 | 1.354577e-49 | -8.615850e-47 |
| Msa0645300 | Msa1185110 | 0.821674 | 3.562042e-53 | -8.615850e-47 |
| Msa0645300 | Msa1195180 | 0.803560 | 3.288425e-49 | -8.615850e-47 |
| Msa0645300 | Msa1195190 | 0.804228 | 2.388876e-49 | -8.615850e-47 |
| Msa0645300 | Msa1209530 | 0.801437 | 9.007310e-49 | -8.615850e-47 |
| Msa0645300 | Msa1225130 | 0.803843 | 2.873086e-49 | -8.615850e-47 |
| Msa0645300 | Msa1227730 | 0.817464 | 3.253009e-52 | -8.615850e-47 |
| Msa0645300 | Msa1228590 | 0.803457 | 3.455002e-49 | -8.615850e-47 |
| Msa0645300 | Msa1232740 | 0.818166 | 2.258758e-52 | -8.615850e-47 |
| Msa0645300 | Msa1246360 | 0.804971 | 1.671632e-49 | -8.615850e-47 |
| Msa0645300 | Msa1248310 | 0.814248 | 1.697331e-51 | -8.615850e-47 |
| Msa0645300 | Msa1248370 | 0.820432 | 6.880081e-53 | -8.615850e-47 |
| Msa0645300 | Msa1276600 | 0.808578 | 2.890673e-50 | -8.615850e-47 |
| Msa0645300 | Msa1276890 | 0.807276 | 5.470578e-50 | -8.615850e-47 |
| Msa0645300 | Msa1277660 | 0.809605 | 1.741943e-50 | -8.615850e-47 |
| Msa0645300 | Msa1284680 | 0.839172 | 1.858021e-57 | -8.615850e-47 |
| Msa0645300 | Msa1286800 | 0.840589 | 7.939551e-58 | -8.615850e-47 |
| Msa0645300 | Msa1287190 | 0.834385 | 3.090444e-56 | -8.615850e-47 |
| Msa0645300 | Msa1287220 | 0.804693 | 1.911012e-49 | -8.615850e-47 |
| Msa0645300 | Msa1288560 | 0.804954 | 1.685281e-49 | -8.615850e-47 |
| Msa0645300 | Msa1313320 | 0.824974 | 6.034015e-54 | -8.615850e-47 |
| Msa0645300 | Msa1353470 | 0.805535 | 1.273785e-49 | -8.615850e-47 |
| Msa0645300 | Msa1366810 | 0.852576 | 4.215995e-61 | -8.615850e-47 |
| Msa0645300 | Msa1366970 | 0.817137 | 3.853374e-52 | -8.615850e-47 |
| Msa0645300 | Msa1373030 | 0.806457 | 8.150616e-50 | -8.615850e-47 |
| Msa0645300 | Msa1378940 | 0.803736 | 3.023543e-49 | -8.615850e-47 |
| Msa0645300 | Msa1394310 | 0.833821 | 4.278595e-56 | -8.615850e-47 |
| Msa0645300 | Msa1403480 | 0.802459 | 5.553413e-49 | -8.615850e-47 |
| Msa0645300 | Msa1410680 | 0.801663 | 8.096038e-49 | -8.615850e-47 |
| Msa0645300 | Msa1412530 | 0.805539 | 1.271122e-49 | -8.615850e-47 |
| Msa0645300 | Msa1420820 | 0.840407 | 8.859730e-58 | -8.615850e-47 |
| Msa0645300 | Msa1423780 | 0.804008 | 2.655039e-49 | -8.615850e-47 |
| Msa0645300 | Msa1443060 | 0.808139 | 3.586501e-50 | -8.615850e-47 |
| Msa0645300 | Msa1444440 | 0.815260 | 1.012925e-51 | -8.615850e-47 |
| Msa0645300 | Msa1448640 | 0.803375 | 3.591828e-49 | -8.615850e-47 |
| Msa0645300 | Msa1451620 | -0.808237 | 3.418910e-50 | -8.615850e-47 |
| Msa0645300 | Msa1458750 | 0.810695 | 1.014341e-50 | -8.615850e-47 |
| Msa0645300 | Msa1466540 | 0.800834 | 1.196475e-48 | -8.615850e-47 |
| Msa0131770 | Msa0645300 | 0.800345 | 1.505196e-48 | -8.615850e-47 |
| Msa0135660 | Msa0645300 | 0.945060 | 6.173938e-104 | -8.615850e-47 |
| Msa0180500 | Msa0645300 | 0.823264 | 1.521108e-53 | -8.615850e-47 |
| Msa0195100 | Msa0645300 | 0.813813 | 2.116938e-51 | -8.615850e-47 |
| Msa0198900 | Msa0645300 | 0.822267 | 2.595310e-53 | -8.615850e-47 |
| Msa0198910 | Msa0645300 | 0.912646 | 1.534069e-83 | -8.615850e-47 |
| Msa0233080 | Msa0645300 | 0.894744 | 1.847932e-75 | -8.615850e-47 |
| Msa0236510 | Msa0645300 | -0.813013 | 3.173579e-51 | -8.615850e-47 |
| Msa0381610 | Msa0645300 | -0.820165 | 7.921849e-53 | -8.615850e-47 |
| Msa0384890 | Msa0645300 | 0.800209 | 1.604315e-48 | -8.615850e-47 |
| Msa0385840 | Msa0645300 | 0.817802 | 2.729424e-52 | -8.615850e-47 |
| Msa0387280 | Msa0645300 | 0.812518 | 4.072051e-51 | -8.615850e-47 |
| Msa0394470 | Msa0645300 | 0.800241 | 1.580630e-48 | -8.615850e-47 |
| Msa0409690 | Msa0645300 | 0.801536 | 8.598917e-49 | -8.615850e-47 |
| Msa0413410 | Msa0645300 | 0.822648 | 2.116772e-53 | -8.615850e-47 |
| Msa0416650 | Msa0645300 | 0.814389 | 1.579638e-51 | -8.615850e-47 |
| Msa0424320 | Msa0645300 | 0.803435 | 3.490723e-49 | -8.615850e-47 |
| Msa0444750 | Msa0645300 | -0.803523 | 3.347402e-49 | -8.615850e-47 |
| Msa0479340 | Msa0645300 | 0.820802 | 5.657379e-53 | -8.615850e-47 |
| Msa0245900 | Msa0645300 | 0.802109 | 6.558029e-49 | -8.615850e-47 |
| Msa0251320 | Msa0645300 | 0.815368 | 9.583783e-52 | -8.615850e-47 |
| Msa0251640 | Msa0645300 | 0.951483 | 1.858495e-109 | -8.615850e-47 |
| Msa0278190 | Msa0645300 | 0.850331 | 1.820102e-60 | -8.615850e-47 |
| Msa0290870 | Msa0645300 | 0.807788 | 4.259432e-50 | -8.615850e-47 |
| Msa0307540 | Msa0645300 | 0.808527 | 2.965085e-50 | -8.615850e-47 |
| Msa0308630 | Msa0645300 | 0.807686 | 4.477426e-50 | -8.615850e-47 |
| Msa0321310 | Msa0645300 | 0.819812 | 9.539712e-53 | -8.615850e-47 |
| Msa0322360 | Msa0645300 | 0.801216 | 9.996294e-49 | -8.615850e-47 |
| Msa0336320 | Msa0645300 | 0.808731 | 2.681253e-50 | -8.615850e-47 |
| Msa0342750 | Msa0645300 | 0.821708 | 3.497197e-53 | -8.615850e-47 |
| Msa0343850 | Msa0645300 | 0.808494 | 3.012654e-50 | -8.615850e-47 |
| Msa0490140 | Msa0645300 | 0.935011 | 1.655057e-96 | -8.615850e-47 |
| Msa0490150 | Msa0645300 | 0.804457 | 2.140993e-49 | -8.615850e-47 |
| Msa0514320 | Msa0645300 | 0.936549 | 1.453055e-97 | -8.615850e-47 |
| Msa0521740 | Msa0645300 | 0.808353 | 3.228848e-50 | -8.615850e-47 |
| Msa0523940 | Msa0645300 | 0.828013 | 1.138085e-54 | -8.615850e-47 |
| Msa0529040 | Msa0645300 | 0.813230 | 2.843176e-51 | -8.615850e-47 |
| Msa0532990 | Msa0645300 | 0.806990 | 6.288657e-50 | -8.615850e-47 |
| Msa0545700 | Msa0645300 | 0.838096 | 3.522986e-57 | -8.615850e-47 |
| Msa0548920 | Msa0645300 | 0.803260 | 3.794164e-49 | -8.615850e-47 |
| Msa0585230 | Msa0645300 | 0.824357 | 8.433060e-54 | -8.615850e-47 |
| Msa0594560 | Msa0645300 | 0.801641 | 8.180076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645300 | MtrunA17_Chr2g0285481 | 62.963 | 324 | 114 | 4 | 2 | 321 | 1 | 322 | 1.46e-144 | 410 |
| Msa0645300 | MtrunA17_Chr1g0172741 | 62.346 | 324 | 116 | 4 | 2 | 321 | 1 | 322 | 4.15e-143 | 407 |
| Msa0645300 | MtrunA17_Chr8g0334551 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 4.48e-130 | 374 |
| Msa0645300 | MtrunA17_Chr2g0321391 | 67.213 | 244 | 77 | 2 | 79 | 321 | 3 | 244 | 4.12e-117 | 338 |
| Msa0645300 | MtrunA17_Chr5g0422701 | 65.174 | 201 | 67 | 2 | 122 | 321 | 14 | 212 | 2.85e-88 | 263 |
| Msa0645300 | MtrunA17_Chr2g0295811 | 41.629 | 221 | 111 | 6 | 119 | 321 | 10 | 230 | 2.92e-44 | 151 |
| Msa0645300 | MtrunA17_Chr5g0422691 | 63.043 | 92 | 33 | 1 | 13 | 103 | 14 | 105 | 1.35e-35 | 124 |
| Msa0645300 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 35 | 1 | 100 | 194 | 1 | 96 | 3.34e-33 | 118 |
| Msa0645300 | MtrunA17_Chr8g0362511 | 29.773 | 309 | 182 | 10 | 21 | 310 | 67 | 359 | 2.57e-27 | 110 |
| Msa0645300 | MtrunA17_Chr5g0402821 | 29.114 | 316 | 194 | 9 | 22 | 315 | 16 | 323 | 4.32e-27 | 108 |
| Msa0645300 | MtrunA17_Chr3g0113081 | 38.158 | 152 | 85 | 2 | 22 | 173 | 185 | 327 | 2.16e-25 | 106 |
| Msa0645300 | MtrunA17_Chr3g0113081 | 30.097 | 309 | 154 | 9 | 12 | 311 | 373 | 628 | 2.56e-25 | 106 |
| Msa0645300 | MtrunA17_Chr3g0113081 | 36.567 | 134 | 78 | 2 | 11 | 144 | 3 | 129 | 2.96e-18 | 85.5 |
| Msa0645300 | MtrunA17_Chr5g0405761 | 28.428 | 299 | 184 | 7 | 19 | 312 | 47 | 320 | 3.68e-24 | 100 |
| Msa0645300 | MtrunA17_Chr6g0469501 | 63.793 | 58 | 21 | 0 | 264 | 321 | 1 | 58 | 2.74e-22 | 88.6 |
| Msa0645300 | MtrunA17_Chr1g0176881 | 30.147 | 136 | 94 | 1 | 21 | 156 | 21 | 155 | 4.46e-16 | 79.0 |
| Msa0645300 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 2.13e-15 | 77.0 |
| Msa0645300 | MtrunA17_Chr8g0360271 | 24.653 | 288 | 191 | 9 | 33 | 310 | 21 | 292 | 1.42e-14 | 73.2 |
| Msa0645300 | MtrunA17_Chr1g0156481 | 22.772 | 303 | 204 | 8 | 19 | 311 | 12 | 294 | 3.66e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645300 | AT5G05800.1 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.13e-23 | 101 |
| Msa0645300 | AT5G05800.1 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.20e-16 | 80.1 |
| Msa0645300 | AT5G05800.5 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.13e-23 | 101 |
| Msa0645300 | AT5G05800.5 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.20e-16 | 80.1 |
| Msa0645300 | AT5G05800.3 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.13e-23 | 101 |
| Msa0645300 | AT5G05800.3 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.20e-16 | 80.1 |
| Msa0645300 | AT5G05800.2 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.13e-23 | 101 |
| Msa0645300 | AT5G05800.2 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.20e-16 | 80.1 |
| Msa0645300 | AT5G05800.4 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.13e-23 | 101 |
| Msa0645300 | AT5G05800.4 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 2.20e-16 | 80.1 |
| Msa0645300 | AT3G11290.2 | 25.566 | 309 | 189 | 7 | 20 | 310 | 163 | 448 | 5.93e-19 | 87.8 |
| Msa0645300 | AT3G11290.1 | 25.566 | 309 | 189 | 7 | 20 | 310 | 163 | 448 | 5.93e-19 | 87.8 |
| Msa0645300 | AT2G24960.1 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 1.97e-15 | 77.8 |
| Msa0645300 | AT2G24960.1 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 9.65e-11 | 63.2 |
| Msa0645300 | AT2G24960.2 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 2.34e-15 | 77.4 |
| Msa0645300 | AT2G24960.2 | 27.972 | 143 | 102 | 1 | 12 | 154 | 314 | 455 | 5.25e-12 | 67.4 |
| Msa0645300 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 4.97e-13 | 70.1 |
| Msa0645300 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 8.04e-11 | 63.2 |
| Msa0645300 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 8.04e-11 | 63.2 |
| Msa0645300 | AT2G19220.1 | 26.019 | 319 | 198 | 12 | 9 | 317 | 149 | 439 | 9.47e-11 | 62.8 |
Find 74 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 4_3:-50141351 | Msa0645300:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 4_3:-50140948 | Msa0645300:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 4_3:-50140957 | Msa0645300:CDS |
| GGCAGAAAACAAAAGCTAAT+TGG | 0.275009 | 4_3:-50141560 | Msa0645300:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 4_3:-50141339 | Msa0645300:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 4_3:-50141332 | Msa0645300:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 4_3:-50141333 | Msa0645300:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 4_3:+50140657 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 4_3:-50141520 | Msa0645300:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 4_3:+50141430 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 4_3:+50141260 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 4_3:-50140947 | Msa0645300:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 4_3:-50141350 | Msa0645300:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 4_3:-50141098 | Msa0645300:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 4_3:-50140623 | Msa0645300:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 4_3:-50141432 | Msa0645300:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 4_3:+50141279 | None:intergenic |
| GCAGAAAACAAAAGCTAATT+GGG | 0.414370 | 4_3:-50141559 | Msa0645300:CDS |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 4_3:-50141584 | Msa0645300:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 4_3:+50141118 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 4_3:-50141454 | Msa0645300:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 4_3:-50141585 | Msa0645300:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 4_3:-50141583 | Msa0645300:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 4_3:-50141398 | Msa0645300:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 4_3:-50141582 | Msa0645300:CDS |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 4_3:-50140768 | Msa0645300:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 4_3:-50141005 | Msa0645300:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 4_3:+50141413 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 4_3:+50141488 | None:intergenic |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 4_3:-50140671 | Msa0645300:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 4_3:-50141085 | Msa0645300:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 4_3:-50140999 | Msa0645300:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 4_3:-50141374 | Msa0645300:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 4_3:+50140635 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 4_3:-50141271 | Msa0645300:intron |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 4_3:+50140579 | None:intergenic |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 4_3:-50141379 | Msa0645300:CDS |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 4_3:-50140640 | Msa0645300:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 4_3:-50141329 | Msa0645300:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 4_3:+50140722 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 4_3:-50140899 | Msa0645300:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 4_3:-50140568 | None:intergenic |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 4_3:-50140632 | Msa0645300:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 4_3:-50140783 | Msa0645300:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 4_3:-50141505 | Msa0645300:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 4_3:-50141071 | Msa0645300:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 4_3:-50140784 | Msa0645300:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 4_3:-50140757 | Msa0645300:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 4_3:-50140670 | Msa0645300:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 4_3:+50140634 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 4_3:-50140975 | Msa0645300:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 4_3:+50141059 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 4_3:-50141581 | Msa0645300:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 4_3:-50141365 | Msa0645300:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 4_3:+50141303 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 4_3:+50141125 | None:intergenic |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 4_3:-50140988 | Msa0645300:CDS |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 4_3:-50141415 | Msa0645300:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 4_3:-50141070 | Msa0645300:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 4_3:+50141106 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 4_3:+50140580 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 4_3:-50140909 | Msa0645300:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 4_3:-50141287 | Msa0645300:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 4_3:+50140573 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 4_3:+50140559 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 4_3:-50141328 | Msa0645300:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 4_3:-50141492 | Msa0645300:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 4_3:-50141069 | Msa0645300:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 4_3:-50141504 | Msa0645300:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 4_3:-50141286 | Msa0645300:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 4_3:-50140739 | Msa0645300:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 4_3:-50141084 | Msa0645300:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 4_3:-50141290 | Msa0645300:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 4_3:-50140648 | Msa0645300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAAATTTTTCATAAAGA+GGG | + | chr4_3:50141025-50141044 | None:intergenic | 15.0% |
| !!! | TTTCTAAATTTTTCATAAAG+AGG | + | chr4_3:50141026-50141045 | None:intergenic | 15.0% |
| !! | TTATGAAAAATTTAGAAACA+AGG | - | chr4_3:50141028-50141047 | Msa0645300:CDS | 15.0% |
| !! | TATGAAAAATTTAGAAACAA+GGG | - | chr4_3:50141029-50141048 | Msa0645300:CDS | 15.0% |
| !!! | TTCTAAATTTTTCATAAAGA+GGG | + | chr4_3:50141025-50141044 | None:intergenic | 15.0% |
| !!! | TTTCTAAATTTTTCATAAAG+AGG | + | chr4_3:50141026-50141045 | None:intergenic | 15.0% |
| !! | TTATGAAAAATTTAGAAACA+AGG | - | chr4_3:50141028-50141047 | Msa0645300:CDS | 15.0% |
| !! | TATGAAAAATTTAGAAACAA+GGG | - | chr4_3:50141029-50141048 | Msa0645300:CDS | 15.0% |
| !! | ATGAAAAATTTAGAAACAAG+GGG | - | chr4_3:50141030-50141049 | Msa0645300:CDS | 20.0% |
| !! | ATGAAAAATTTAGAAACAAG+GGG | - | chr4_3:50141030-50141049 | Msa0645300:CDS | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr4_3:50140575-50140594 | Msa0645300:CDS | 25.0% |
| ! | GATGTGAGTTATGAAAATAT+AGG | - | chr4_3:50140995-50141014 | Msa0645300:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | - | chr4_3:50141233-50141252 | Msa0645300:intron | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | - | chr4_3:50141234-50141253 | Msa0645300:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr4_3:50141260-50141279 | Msa0645300:intron | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr4_3:50140575-50140594 | Msa0645300:CDS | 25.0% |
| ! | GATGTGAGTTATGAAAATAT+AGG | - | chr4_3:50140995-50141014 | Msa0645300:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | - | chr4_3:50141233-50141252 | Msa0645300:intron | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | - | chr4_3:50141234-50141253 | Msa0645300:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr4_3:50141260-50141279 | Msa0645300:intron | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr4_3:50140574-50140593 | Msa0645300:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | - | chr4_3:50140622-50140641 | Msa0645300:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr4_3:50140661-50140680 | Msa0645300:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr4_3:50140711-50140730 | Msa0645300:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr4_3:50140726-50140745 | Msa0645300:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr4_3:50140727-50140746 | Msa0645300:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | - | chr4_3:50140749-50140768 | Msa0645300:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | + | chr4_3:50140754-50140773 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr4_3:50140830-50140849 | Msa0645300:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr4_3:50140831-50140850 | Msa0645300:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr4_3:50140924-50140943 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr4_3:50140967-50140986 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr4_3:50141143-50141162 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr4_3:50141160-50141179 | Msa0645300:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr4_3:50140574-50140593 | Msa0645300:CDS | 30.0% | |
| GCAGAAAACAAAAGCTAATT+GGG | - | chr4_3:50140622-50140641 | Msa0645300:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr4_3:50140661-50140680 | Msa0645300:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr4_3:50140711-50140730 | Msa0645300:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr4_3:50140726-50140745 | Msa0645300:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr4_3:50140727-50140746 | Msa0645300:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | - | chr4_3:50140749-50140768 | Msa0645300:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | + | chr4_3:50140754-50140773 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr4_3:50140830-50140849 | Msa0645300:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr4_3:50140831-50140850 | Msa0645300:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr4_3:50140924-50140943 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr4_3:50140967-50140986 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr4_3:50141143-50141162 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr4_3:50141160-50141179 | Msa0645300:CDS | 30.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | - | chr4_3:50140621-50140640 | Msa0645300:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr4_3:50140710-50140729 | Msa0645300:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr4_3:50140783-50140802 | Msa0645300:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr4_3:50140842-50140861 | Msa0645300:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr4_3:50141066-50141085 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr4_3:50141067-50141086 | Msa0645300:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr4_3:50141272-50141291 | Msa0645300:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr4_3:50141332-50141351 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr4_3:50141462-50141481 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTAAT+TGG | - | chr4_3:50140621-50140640 | Msa0645300:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr4_3:50140710-50140729 | Msa0645300:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr4_3:50140783-50140802 | Msa0645300:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr4_3:50140842-50140861 | Msa0645300:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr4_3:50141066-50141085 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr4_3:50141067-50141086 | Msa0645300:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr4_3:50141272-50141291 | Msa0645300:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr4_3:50141332-50141351 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr4_3:50141462-50141481 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr4_3:50140582-50140601 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr4_3:50140714-50140733 | Msa0645300:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | - | chr4_3:50140802-50140821 | Msa0645300:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | - | chr4_3:50140807-50140826 | Msa0645300:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr4_3:50140848-50140867 | Msa0645300:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr4_3:50140849-50140868 | Msa0645300:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr4_3:50141078-50141097 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr4_3:50141076-50141095 | Msa0645300:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr4_3:50141083-50141102 | Msa0645300:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr4_3:50141224-50141243 | Msa0645300:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr4_3:50141424-50141443 | Msa0645300:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | + | chr4_3:50141527-50141546 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | - | chr4_3:50141533-50141552 | Msa0645300:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr4_3:50141611-50141630 | None:intergenic | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr4_3:50140582-50140601 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr4_3:50140714-50140733 | Msa0645300:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | - | chr4_3:50140802-50140821 | Msa0645300:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | - | chr4_3:50140807-50140826 | Msa0645300:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr4_3:50140848-50140867 | Msa0645300:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr4_3:50140849-50140868 | Msa0645300:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr4_3:50141078-50141097 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr4_3:50141076-50141095 | Msa0645300:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr4_3:50141083-50141102 | Msa0645300:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr4_3:50141224-50141243 | Msa0645300:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr4_3:50141424-50141443 | Msa0645300:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | + | chr4_3:50141527-50141546 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | - | chr4_3:50141533-50141552 | Msa0645300:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr4_3:50141611-50141630 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr4_3:50140676-50140695 | Msa0645300:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr4_3:50140677-50140696 | Msa0645300:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr4_3:50140766-50140785 | Msa0645300:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr4_3:50140771-50140790 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr4_3:50140816-50140835 | Msa0645300:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr4_3:50140853-50140872 | Msa0645300:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | + | chr4_3:50140881-50140900 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | + | chr4_3:50141059-50141078 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr4_3:50141096-50141115 | Msa0645300:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr4_3:50141097-50141116 | Msa0645300:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr4_3:50141166-50141185 | Msa0645300:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr4_3:50141282-50141301 | Msa0645300:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr4_3:50141510-50141529 | Msa0645300:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr4_3:50141511-50141530 | Msa0645300:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr4_3:50141541-50141560 | Msa0645300:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr4_3:50141558-50141577 | Msa0645300:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr4_3:50140676-50140695 | Msa0645300:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr4_3:50140677-50140696 | Msa0645300:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr4_3:50140766-50140785 | Msa0645300:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr4_3:50140771-50140790 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr4_3:50140816-50140835 | Msa0645300:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr4_3:50140853-50140872 | Msa0645300:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | + | chr4_3:50140881-50140900 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | + | chr4_3:50141059-50141078 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr4_3:50141096-50141115 | Msa0645300:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr4_3:50141097-50141116 | Msa0645300:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr4_3:50141166-50141185 | Msa0645300:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr4_3:50141282-50141301 | Msa0645300:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr4_3:50141510-50141529 | Msa0645300:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr4_3:50141511-50141530 | Msa0645300:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr4_3:50141541-50141560 | Msa0645300:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr4_3:50141558-50141577 | Msa0645300:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr4_3:50140597-50140616 | Msa0645300:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr4_3:50140598-50140617 | Msa0645300:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr4_3:50140852-50140871 | Msa0645300:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr4_3:50140891-50140910 | Msa0645300:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr4_3:50140894-50140913 | Msa0645300:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr4_3:50140895-50140914 | Msa0645300:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr4_3:50141110-50141129 | Msa0645300:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr4_3:50141111-50141130 | Msa0645300:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr4_3:50141125-50141144 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr4_3:50141206-50141225 | Msa0645300:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr4_3:50141397-50141416 | Msa0645300:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr4_3:50141413-50141432 | Msa0645300:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr4_3:50141549-50141568 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr4_3:50141550-50141569 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr4_3:50141549-50141568 | Msa0645300:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr4_3:50141604-50141623 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr4_3:50141605-50141624 | None:intergenic | 50.0% |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr4_3:50140597-50140616 | Msa0645300:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr4_3:50140598-50140617 | Msa0645300:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr4_3:50140852-50140871 | Msa0645300:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr4_3:50140891-50140910 | Msa0645300:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr4_3:50140894-50140913 | Msa0645300:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr4_3:50140895-50140914 | Msa0645300:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr4_3:50141110-50141129 | Msa0645300:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr4_3:50141111-50141130 | Msa0645300:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr4_3:50141125-50141144 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr4_3:50141206-50141225 | Msa0645300:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr4_3:50141397-50141416 | Msa0645300:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr4_3:50141413-50141432 | Msa0645300:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr4_3:50141549-50141568 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr4_3:50141550-50141569 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr4_3:50141549-50141568 | Msa0645300:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr4_3:50141604-50141623 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr4_3:50141605-50141624 | None:intergenic | 50.0% |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr4_3:50140596-50140615 | Msa0645300:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr4_3:50140599-50140618 | Msa0645300:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr4_3:50140611-50140630 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr4_3:50140689-50140708 | Msa0645300:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr4_3:50140696-50140715 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr4_3:50140905-50140924 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr4_3:50140910-50140929 | Msa0645300:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr4_3:50141112-50141131 | Msa0645300:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr4_3:50141176-50141195 | Msa0645300:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | - | chr4_3:50141182-50141201 | Msa0645300:intron | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | - | chr4_3:50141193-50141212 | Msa0645300:intron | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr4_3:50141398-50141417 | Msa0645300:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr4_3:50141442-50141461 | Msa0645300:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr4_3:50140596-50140615 | Msa0645300:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr4_3:50140599-50140618 | Msa0645300:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr4_3:50140611-50140630 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr4_3:50140689-50140708 | Msa0645300:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr4_3:50140696-50140715 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr4_3:50140905-50140924 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr4_3:50140910-50140929 | Msa0645300:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr4_3:50141112-50141131 | Msa0645300:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr4_3:50141176-50141195 | Msa0645300:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | - | chr4_3:50141182-50141201 | Msa0645300:intron | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | - | chr4_3:50141193-50141212 | Msa0645300:intron | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr4_3:50141398-50141417 | Msa0645300:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr4_3:50141442-50141461 | Msa0645300:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr4_3:50140600-50140619 | Msa0645300:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr4_3:50140600-50140619 | Msa0645300:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr4_3:50140603-50140622 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr4_3:50140606-50140625 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr4_3:50140603-50140622 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr4_3:50140606-50140625 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 50140569 | 50141634 | 50140569 | ID=Msa0645300;Name=Msa0645300 |
| chr4_3 | mRNA | 50140569 | 50141634 | 50140569 | ID=Msa0645300-mRNA-1;Parent=Msa0645300;Name=Msa0645300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326 |
| chr4_3 | exon | 50141272 | 50141634 | 50141272 | ID=Msa0645300-mRNA-1:exon:11963;Parent=Msa0645300-mRNA-1 |
| chr4_3 | exon | 50140569 | 50141186 | 50140569 | ID=Msa0645300-mRNA-1:exon:11962;Parent=Msa0645300-mRNA-1 |
| chr4_3 | CDS | 50141272 | 50141634 | 50141272 | ID=Msa0645300-mRNA-1:cds;Parent=Msa0645300-mRNA-1 |
| chr4_3 | CDS | 50140569 | 50141186 | 50140569 | ID=Msa0645300-mRNA-1:cds;Parent=Msa0645300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
