Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823570 | XP_027187359.1 | 88.755 | 249 | 23 | 2 | 1 | 246 | 1 | 247 | 1.15e-159 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823570 | sp|Q946Y7|SYP61_ARATH | 67.130 | 216 | 67 | 3 | 1 | 215 | 1 | 213 | 1.45e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823570 | A0A3Q7X0P4 | 88.755 | 249 | 23 | 2 | 1 | 246 | 1 | 247 | 5.47e-160 | 453 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0823570 | 0.814655 | 1.379018e-51 | -8.615850e-47 |
| Msa0742510 | Msa0823570 | 0.814736 | 1.323787e-51 | -8.615850e-47 |
| Msa0823570 | Msa0862650 | 0.864930 | 8.527750e-65 | -8.615850e-47 |
| Msa0823570 | Msa1098890 | 0.802995 | 4.306271e-49 | -8.615850e-47 |
| Msa0127850 | Msa0823570 | 0.806971 | 6.346115e-50 | -8.615850e-47 |
| Msa0174000 | Msa0823570 | 0.819826 | 9.471138e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823570 | MtrunA17_Chr5g0444231 | 99.052 | 211 | 2 | 0 | 1 | 211 | 1 | 211 | 1.12e-153 | 428 |
| Msa0823570 | MtrunA17_Chr3g0099051 | 77.251 | 211 | 44 | 2 | 1 | 211 | 1 | 207 | 1.84e-116 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823570 | AT1G28490.1 | 67.130 | 216 | 67 | 3 | 1 | 215 | 1 | 213 | 1.47e-100 | 294 |
| Msa0823570 | AT1G28490.3 | 67.081 | 161 | 50 | 2 | 55 | 215 | 11 | 168 | 4.34e-70 | 214 |
| Msa0823570 | AT1G28490.2 | 67.081 | 161 | 50 | 2 | 55 | 215 | 17 | 174 | 8.80e-70 | 214 |
Find 70 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTTGACAACGTAAAA+TGG | 0.199042 | 5_3:+62253704 | None:intergenic |
| TCTTGGTTGTAAATGCAAAA+AGG | 0.254892 | 5_3:-62248816 | Msa0823570:CDS |
| TACCTGGGTGCGAGCATTGC+TGG | 0.310121 | 5_3:+62252070 | None:intergenic |
| TGAAGAATACCAAGATAAAA+AGG | 0.311255 | 5_3:+62248857 | None:intergenic |
| GGAAAAGATTCTAGATGAAC+TGG | 0.327556 | 5_3:-62249131 | Msa0823570:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.340172 | 5_3:-62252174 | Msa0823570:intron |
| CAGAATCTGGAATTGGGAAT+TGG | 0.351772 | 5_3:+62253754 | None:intergenic |
| GACGTACTTTGATGAGAATC+TGG | 0.370989 | 5_3:+62251754 | None:intergenic |
| CATTATCCCCAGAGGCATAT+TGG | 0.373000 | 5_3:+62251722 | None:intergenic |
| TAGCATCTAGAGATCCTTCT+TGG | 0.380240 | 5_3:-62252136 | Msa0823570:CDS |
| TGGGAAAACACTTCTGATAC+TGG | 0.386415 | 5_3:-62253080 | Msa0823570:CDS |
| GGGTTAATTAAGGGTGTGTT+TGG | 0.389644 | 5_3:+62253936 | None:intergenic |
| AACGAACACTAAGCTTTGTT+TGG | 0.402381 | 5_3:+62253817 | None:intergenic |
| GATGATGATATGTGGTTTGC+TGG | 0.410145 | 5_3:-62248893 | Msa0823570:CDS |
| CATTGCTGGTCCACCTCCTC+CGG | 0.425273 | 5_3:+62252084 | None:intergenic |
| CAATACATGAAGAGCTCCTT+GGG | 0.426328 | 5_3:-62249345 | Msa0823570:CDS |
| AAGTCTAACCAATATGCCTC+TGG | 0.429106 | 5_3:-62251730 | Msa0823570:CDS |
| ATGAAGAAGGCCAGTGCAAA+GGG | 0.430950 | 5_3:-62248922 | Msa0823570:CDS |
| CATCATCTGCCCCTTTGCAC+TGG | 0.444110 | 5_3:+62248912 | None:intergenic |
| ACACGAAATTGATGAACAAA+TGG | 0.457215 | 5_3:+62253787 | None:intergenic |
| AGTTTAAGTGTACAGAGAAT+CGG | 0.466460 | 5_3:-62249382 | Msa0823570:CDS |
| GTGAAAAGAAAAGAAAGTAT+TGG | 0.466803 | 5_3:+62253863 | None:intergenic |
| CAGCAAGAACTTCCTTTGAA+AGG | 0.473857 | 5_3:+62253045 | None:intergenic |
| TTGTGGAAGTATTGAGTGGC+AGG | 0.474925 | 5_3:-62253021 | Msa0823570:intron |
| AAGGAAGTTCTTGCTGCTTG+TGG | 0.475725 | 5_3:-62253038 | Msa0823570:CDS |
| CTAGTATAAGTGGGATGCAC+AGG | 0.476219 | 5_3:-62251792 | Msa0823570:CDS |
| ACAATACATGAAGAGCTCCT+TGG | 0.478003 | 5_3:-62249346 | Msa0823570:CDS |
| CTAGTCGTTTCTGAATGTCT+TGG | 0.480262 | 5_3:-62248833 | Msa0823570:CDS |
| ACAACTCATGCTAGTATAAG+TGG | 0.493222 | 5_3:-62251802 | Msa0823570:CDS |
| ATTAAGAGAACAGTGGAAGC+TGG | 0.496755 | 5_3:-62251841 | Msa0823570:CDS |
| TACTGCTATTGATAGGCAGC+AGG | 0.501024 | 5_3:-62249425 | Msa0823570:intron |
| TCATAGAATCAGAATCAGAT+AGG | 0.505091 | 5_3:-62251693 | Msa0823570:CDS |
| ATGAAGTGGAGATTGAAAAC+CGG | 0.508658 | 5_3:-62252103 | Msa0823570:CDS |
| GAGAACAGTGGAAGCTGGAA+AGG | 0.519334 | 5_3:-62251836 | Msa0823570:CDS |
| ACATGAAGAGCTCCTTGGGC+AGG | 0.525155 | 5_3:-62249341 | Msa0823570:intron |
| AGTCTAACCAATATGCCTCT+GGG | 0.528315 | 5_3:-62251729 | Msa0823570:CDS |
| AGATTGAAAACCGGAGGAGG+TGG | 0.529877 | 5_3:-62252094 | Msa0823570:CDS |
| TTGGACAAAATCTAGACGAT+TGG | 0.532143 | 5_3:+62249087 | None:intergenic |
| GTACAGAGAATCGGAGGTGT+TGG | 0.534643 | 5_3:-62249373 | Msa0823570:CDS |
| TCTAGAGATCCTTCTTGGTA+TGG | 0.537717 | 5_3:-62252131 | Msa0823570:CDS |
| AGATGAACTGGGAAATGAGA+TGG | 0.539156 | 5_3:-62249119 | Msa0823570:CDS |
| TATTGATAGGCAGCAGGACG+AGG | 0.542113 | 5_3:-62249419 | Msa0823570:intron |
| TCTGGAATTGGGAATTGGAA+TGG | 0.545373 | 5_3:+62253759 | None:intergenic |
| AGTGGCAATGGTGATGAAGA+AGG | 0.556318 | 5_3:-62248935 | Msa0823570:CDS |
| ATTTCAGAAAAGAGTGGCAA+TGG | 0.560428 | 5_3:-62248947 | Msa0823570:intron |
| AGAACAGTGGAAGCTGGAAA+GGG | 0.568137 | 5_3:-62251835 | Msa0823570:CDS |
| GATGAAGAAGGCCAGTGCAA+AGG | 0.571528 | 5_3:-62248923 | Msa0823570:CDS |
| TGGAGATTGAAAACCGGAGG+AGG | 0.573238 | 5_3:-62252097 | Msa0823570:CDS |
| TTGGTATGGCATTGATGAAG+TGG | 0.577534 | 5_3:-62252117 | Msa0823570:CDS |
| TAAAATGGATCTTGAGCTGA+GGG | 0.587285 | 5_3:+62253719 | None:intergenic |
| CGAAATTGATGAACAAATGG+AGG | 0.592194 | 5_3:+62253790 | None:intergenic |
| CAAGACATTCAGAAACGACT+AGG | 0.594084 | 5_3:+62248834 | None:intergenic |
| ATTGATGAACAAATGGAGGA+AGG | 0.594980 | 5_3:+62253794 | None:intergenic |
| TGAGCATTTGAACCTTTCAA+AGG | 0.596975 | 5_3:-62253057 | Msa0823570:CDS |
| CTGCTTGTGGAAGTATTGAG+TGG | 0.603126 | 5_3:-62253025 | Msa0823570:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.605775 | 5_3:+62252122 | None:intergenic |
| GGATGCACAGGGAATTAATG+AGG | 0.609838 | 5_3:-62251780 | Msa0823570:CDS |
| GACCAGCAATGCTCGCACCC+AGG | 0.617619 | 5_3:-62252072 | Msa0823570:intron |
| CAACTCATGCTAGTATAAGT+GGG | 0.625213 | 5_3:-62251801 | Msa0823570:CDS |
| ATATATCAGCTACCTGCCCA+AGG | 0.637394 | 5_3:+62249329 | None:intergenic |
| TAGTATAAGTGGGATGCACA+GGG | 0.644916 | 5_3:-62251791 | Msa0823570:CDS |
| GTAAAATGGATCTTGAGCTG+AGG | 0.647163 | 5_3:+62253718 | None:intergenic |
| GTCTAACCAATATGCCTCTG+GGG | 0.647453 | 5_3:-62251728 | Msa0823570:CDS |
| AAGTGGAGATTGAAAACCGG+AGG | 0.652309 | 5_3:-62252100 | Msa0823570:CDS |
| GAAAAGATTCTAGATGAACT+GGG | 0.658756 | 5_3:-62249130 | Msa0823570:CDS |
| GGGCAGATGATGATGATATG+TGG | 0.673837 | 5_3:-62248901 | Msa0823570:CDS |
| TTAAGTGTACAGAGAATCGG+AGG | 0.688868 | 5_3:-62249379 | Msa0823570:CDS |
| GCACACAATTAAGAGAACAG+TGG | 0.717353 | 5_3:-62251848 | Msa0823570:CDS |
| TGAAGAAGGCCAGTGCAAAG+GGG | 0.733851 | 5_3:-62248921 | Msa0823570:CDS |
| GAAATCATCATTATCCCCAG+AGG | 0.750638 | 5_3:+62251714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTATCAATTATTATTT+GGG | - | chr5_3:62249571-62249590 | Msa0823570:intron | 10.0% |
| !! | ATATTTGTAAATATCATTAT+TGG | - | chr5_3:62250049-62250068 | Msa0823570:intron | 10.0% |
| !!! | TATAATATTTTCATAGTTTA+GGG | + | chr5_3:62250248-62250267 | None:intergenic | 10.0% |
| !!! | TTATAATATTTTCATAGTTT+AGG | + | chr5_3:62250249-62250268 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr5_3:62251285-62251304 | Msa0823570:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr5_3:62251286-62251305 | Msa0823570:intron | 10.0% |
| !! | TATATAATGAAAAAATAACT+GGG | + | chr5_3:62252841-62252860 | None:intergenic | 10.0% |
| !!! | GTCAATTTTTTTTTTATATT+AGG | - | chr5_3:62253054-62253073 | Msa0823570:CDS | 10.0% |
| !! | TAAAAAAAAGGGTTAATTAA+GGG | + | chr5_3:62248821-62248840 | None:intergenic | 15.0% |
| !! | TTAAAAAAAAGGGTTAATTA+AGG | + | chr5_3:62248822-62248841 | None:intergenic | 15.0% |
| !!! | CAAATAATAATTGATAATGA+AGG | + | chr5_3:62249572-62249591 | None:intergenic | 15.0% |
| !! | CTTCATTATCAATTATTATT+TGG | - | chr5_3:62249570-62249589 | Msa0823570:intron | 15.0% |
| !!! | ATTTTATGGTTTTTTTTATG+TGG | - | chr5_3:62249608-62249627 | Msa0823570:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr5_3:62251287-62251306 | Msa0823570:intron | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | - | chr5_3:62251310-62251329 | Msa0823570:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr5_3:62251350-62251369 | Msa0823570:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr5_3:62251351-62251370 | Msa0823570:intron | 15.0% |
| !! | AGTAACTTTAACATAAATAT+AGG | - | chr5_3:62251754-62251773 | Msa0823570:CDS | 15.0% |
| !!! | TTGGTTTTAAAAGTTAAATT+TGG | - | chr5_3:62251811-62251830 | Msa0823570:CDS | 15.0% |
| !! | CTATATAATGAAAAAATAAC+TGG | + | chr5_3:62252842-62252861 | None:intergenic | 15.0% |
| !! | CATCAATAAAAATAGGAATT+GGG | + | chr5_3:62249236-62249255 | None:intergenic | 20.0% |
| !! | TACATTGCATCAATAAAAAT+AGG | + | chr5_3:62249243-62249262 | None:intergenic | 20.0% |
| !! | CATCAATAAAAATAAGAACT+GGG | + | chr5_3:62249493-62249512 | None:intergenic | 20.0% |
| !!! | TGTGATTGATATTGATTTTA+TGG | - | chr5_3:62249594-62249613 | Msa0823570:intron | 20.0% |
| !! | TTCTTTAGCAAGAAAATTTA+AGG | - | chr5_3:62249989-62250008 | Msa0823570:intron | 20.0% |
| !! | ATGGTTTATTCAAAATAAGA+AGG | - | chr5_3:62250351-62250370 | Msa0823570:intron | 20.0% |
| !! | TGGTTTATTCAAAATAAGAA+GGG | - | chr5_3:62250352-62250371 | Msa0823570:intron | 20.0% |
| !!! | GTGTTAATTTTTTGATAGAA+AGG | - | chr5_3:62250559-62250578 | Msa0823570:intron | 20.0% |
| !!! | TTAATTTTTTGATAGAAAGG+TGG | - | chr5_3:62250562-62250581 | Msa0823570:intron | 20.0% |
| !!! | TTTATTTTCTTGGTTACAAA+AGG | + | chr5_3:62250812-62250831 | None:intergenic | 20.0% |
| !!! | AATGGAAAACTTTATTTTCT+TGG | + | chr5_3:62250822-62250841 | None:intergenic | 20.0% |
| !! | AACAAATGTTGTTCATTAAT+AGG | - | chr5_3:62250873-62250892 | Msa0823570:intron | 20.0% |
| !! | TACTATATAAGATGAAGAAA+GGG | + | chr5_3:62251107-62251126 | None:intergenic | 20.0% |
| !! | ATACTATATAAGATGAAGAA+AGG | + | chr5_3:62251108-62251127 | None:intergenic | 20.0% |
| !! | ATGTACACAAATTCAATTTA+AGG | + | chr5_3:62251148-62251167 | None:intergenic | 20.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | - | chr5_3:62251309-62251328 | Msa0823570:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr5_3:62251420-62251439 | Msa0823570:intron | 20.0% |
| !! | AAACATTATAACTGAAATAG+TGG | - | chr5_3:62251669-62251688 | Msa0823570:intron | 20.0% |
| !! | AATACAATGTTCAAGTATTT+AGG | - | chr5_3:62251782-62251801 | Msa0823570:CDS | 20.0% |
| !! | ATTTGGAAACAAAATATGTT+TGG | - | chr5_3:62251828-62251847 | Msa0823570:CDS | 20.0% |
| !! | TTTGGAAACAAAATATGTTT+GGG | - | chr5_3:62251829-62251848 | Msa0823570:CDS | 20.0% |
| !! | AAATATGTTTGGGTAAAATA+CGG | - | chr5_3:62251839-62251858 | Msa0823570:CDS | 20.0% |
| !!! | CTTAAAACTTTTTCAAGATT+GGG | + | chr5_3:62251881-62251900 | None:intergenic | 20.0% |
| !!! | CAATCTTGAAAAAGTTTTAA+GGG | - | chr5_3:62251880-62251899 | Msa0823570:intron | 20.0% |
| !!! | AAAATGTATTTATGTGGTTT+TGG | + | chr5_3:62251909-62251928 | None:intergenic | 20.0% |
| !! | AATCAGAAAATGTATTTATG+TGG | + | chr5_3:62251915-62251934 | None:intergenic | 20.0% |
| !!! | TTTAGAATTTCAAAAGTTTG+AGG | + | chr5_3:62252573-62252592 | None:intergenic | 20.0% |
| !!! | TTTGATTGATGATAGAAAAT+TGG | - | chr5_3:62252886-62252905 | Msa0823570:intron | 20.0% |
| !!! | TTGATTGATGATAGAAAATT+GGG | - | chr5_3:62252887-62252906 | Msa0823570:intron | 20.0% |
| !!! | TAATTGTTTTACTTTGTTTG+TGG | - | chr5_3:62252912-62252931 | Msa0823570:intron | 20.0% |
| !!! | AATTGTTTTACTTTGTTTGT+GGG | - | chr5_3:62252913-62252932 | Msa0823570:intron | 20.0% |
| !!! | ATTAACTTCACTTCTTTTTT+TGG | + | chr5_3:62253115-62253134 | None:intergenic | 20.0% |
| !!! | TATTGGAGTTTTTTCTTGTT+TGG | + | chr5_3:62248868-62248887 | None:intergenic | 25.0% |
| !! | GTGAAAAGAAAAGAAAGTAT+TGG | + | chr5_3:62248885-62248904 | None:intergenic | 25.0% |
| !! | CAAATTTGCAATTTTTCTCA+TGG | - | chr5_3:62249119-62249138 | Msa0823570:CDS | 25.0% |
| ! | AATTCAATACACAATCAGAT+TGG | + | chr5_3:62249176-62249195 | None:intergenic | 25.0% |
| ! | GCATCAATAAAAATAGGAAT+TGG | + | chr5_3:62249237-62249256 | None:intergenic | 25.0% |
| ! | CATCAATAAAAATAAGAGCT+GGG | + | chr5_3:62249339-62249358 | None:intergenic | 25.0% |
| ! | TCATCAATAAAAATAAGAGC+TGG | + | chr5_3:62249340-62249359 | None:intergenic | 25.0% |
| ! | CATCAACAAAAATAGGAATT+GGG | + | chr5_3:62249391-62249410 | None:intergenic | 25.0% |
| !!! | ATGCAAAGTTTTGATATTTG+AGG | - | chr5_3:62249463-62249482 | Msa0823570:intron | 25.0% |
| ! | GCATCAATAAAAATAAGAAC+TGG | + | chr5_3:62249494-62249513 | None:intergenic | 25.0% |
| !! | TGCAATCTAATTTTCATCAA+TGG | - | chr5_3:62249645-62249664 | Msa0823570:intron | 25.0% |
| !! | GCAATCTAATTTTCATCAAT+GGG | - | chr5_3:62249646-62249665 | Msa0823570:intron | 25.0% |
| ! | AAAATACATTGACCAAATTG+TGG | + | chr5_3:62249781-62249800 | None:intergenic | 25.0% |
| ! | TTTATTTATTCCTCCAACAT+TGG | - | chr5_3:62249815-62249834 | Msa0823570:intron | 25.0% |
| !! | ACTAATTTGTATACCAATGT+TGG | + | chr5_3:62249831-62249850 | None:intergenic | 25.0% |
| ! | GTAAAATAACTTCTGAACAT+GGG | + | chr5_3:62249956-62249975 | None:intergenic | 25.0% |
| ! | AGTAAAATAACTTCTGAACA+TGG | + | chr5_3:62249957-62249976 | None:intergenic | 25.0% |
| ! | GATACAATCAAAGAAAAACA+AGG | + | chr5_3:62250172-62250191 | None:intergenic | 25.0% |
| ! | ACGAAGTTTCAAATACTAAA+GGG | + | chr5_3:62250277-62250296 | None:intergenic | 25.0% |
| !! | TTTAGTATTTGAAACTTCGT+CGG | - | chr5_3:62250277-62250296 | Msa0823570:intron | 25.0% |
| ! | AATATCAGGGACTAAATTAA+TGG | - | chr5_3:62250318-62250337 | Msa0823570:intron | 25.0% |
| ! | AATTAATGGTTTCTGATTGA+TGG | - | chr5_3:62250332-62250351 | Msa0823570:intron | 25.0% |
| ! | TTTATTCAAAATAAGAAGGG+TGG | - | chr5_3:62250355-62250374 | Msa0823570:intron | 25.0% |
| !! | ACACAAATTCAATTTAAGGT+GGG | + | chr5_3:62251144-62251163 | None:intergenic | 25.0% |
| ! | TACACAAATTCAATTTAAGG+TGG | + | chr5_3:62251145-62251164 | None:intergenic | 25.0% |
| !!! | TACAAAAAAGTGTCCATAAT+TGG | + | chr5_3:62251188-62251207 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr5_3:62251397-62251416 | Msa0823570:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr5_3:62251398-62251417 | Msa0823570:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr5_3:62251419-62251438 | Msa0823570:intron | 25.0% |
| ! | ACAATTTATTGCAAGTACAA+AGG | + | chr5_3:62251530-62251549 | None:intergenic | 25.0% |
| ! | CAACATTAAAACAATTAGCA+CGG | + | chr5_3:62251624-62251643 | None:intergenic | 25.0% |
| ! | CCTATAGAAGATAAGAAAAT+CGG | - | chr5_3:62251707-62251726 | Msa0823570:CDS | 25.0% |
| ! | CTATAGAAGATAAGAAAATC+GGG | - | chr5_3:62251708-62251727 | Msa0823570:CDS | 25.0% |
| !!! | CCTTAAAACTTTTTCAAGAT+TGG | + | chr5_3:62251882-62251901 | None:intergenic | 25.0% |
| !! | CCAATCTTGAAAAAGTTTTA+AGG | - | chr5_3:62251879-62251898 | Msa0823570:intron | 25.0% |
| !! | TTTTGTTGAGATATAGCTTT+TGG | - | chr5_3:62252339-62252358 | Msa0823570:intron | 25.0% |
| !! | TTTGTTGAGATATAGCTTTT+GGG | - | chr5_3:62252340-62252359 | Msa0823570:intron | 25.0% |
| ! | CAAAAGATTTAGAAGTTTGA+TGG | + | chr5_3:62252608-62252627 | None:intergenic | 25.0% |
| ! | TGGAAAAGTTTGTAAAAAAG+AGG | + | chr5_3:62252711-62252730 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACTTTGTTTGTG+GGG | - | chr5_3:62252914-62252933 | Msa0823570:intron | 25.0% |
| ! | AAAGCAAAAAGATAGAACAA+AGG | + | chr5_3:62252967-62252986 | None:intergenic | 25.0% |
| ! | ATTATAAAACTGACAACTTG+TGG | + | chr5_3:62253292-62253311 | None:intergenic | 25.0% |
| ! | TGATATTTACTGCTATTGAT+AGG | - | chr5_3:62253313-62253332 | Msa0823570:intron | 25.0% |
| ! | TTTATGATTTCAGAAAAGAG+TGG | - | chr5_3:62253792-62253811 | Msa0823570:five_prime_UTR | 25.0% |
| ! | GATAAAAAGGAAAATGAACA+GGG | + | chr5_3:62253878-62253897 | None:intergenic | 25.0% |
| ! | AGATAAAAAGGAAAATGAAC+AGG | + | chr5_3:62253879-62253898 | None:intergenic | 25.0% |
| !! | GTTCATTTTCCTTTTTATCT+TGG | - | chr5_3:62253879-62253898 | Msa0823570:five_prime_UTR | 25.0% |
| ! | TGAAGAATACCAAGATAAAA+AGG | + | chr5_3:62253891-62253910 | None:intergenic | 25.0% |
| ACACGAAATTGATGAACAAA+TGG | + | chr5_3:62248961-62248980 | None:intergenic | 30.0% | |
| !! | TTTTCTCAGAATCTGGAATT+GGG | + | chr5_3:62249000-62249019 | None:intergenic | 30.0% |
| !! | TTTTTCTCAGAATCTGGAAT+TGG | + | chr5_3:62249001-62249020 | None:intergenic | 30.0% |
| !!! | GCATTTTTTTTCTCAGAATC+TGG | + | chr5_3:62249007-62249026 | None:intergenic | 30.0% |
| TCTTCTTTGACAACGTAAAA+TGG | + | chr5_3:62249044-62249063 | None:intergenic | 30.0% | |
| TTCTAACAATTGCGAAATGA+AGG | + | chr5_3:62249098-62249117 | None:intergenic | 30.0% | |
| TGCATTGCATCAACAAAAAA+GGG | + | chr5_3:62249295-62249314 | None:intergenic | 30.0% | |
| TTGCATTGCATCAACAAAAA+AGG | + | chr5_3:62249296-62249315 | None:intergenic | 30.0% | |
| GCATCAACAAAAATAGGAAT+TGG | + | chr5_3:62249392-62249411 | None:intergenic | 30.0% | |
| TGCAATGCATCAACAAAAAT+AGG | + | chr5_3:62249398-62249417 | None:intergenic | 30.0% | |
| TGCATTGCATCAACAAAAAT+GGG | + | chr5_3:62249448-62249467 | None:intergenic | 30.0% | |
| TTGCATTGCATCAACAAAAA+TGG | + | chr5_3:62249296-62249315 | None:intergenic | 30.0% | |
| ! | TTTTATGTGGCAAGATTGAT+AGG | - | chr5_3:62249621-62249640 | Msa0823570:intron | 30.0% |
| AATTTGTATACCAATGTTGG+AGG | + | chr5_3:62249828-62249847 | None:intergenic | 30.0% | |
| AGTTATTAAACACGCACTTA+AGG | - | chr5_3:62249881-62249900 | Msa0823570:intron | 30.0% | |
| AATCAAAGAAAAACAAGGCT+GGG | + | chr5_3:62250167-62250186 | None:intergenic | 30.0% | |
| GACGAAGTTTCAAATACTAA+AGG | + | chr5_3:62250278-62250297 | None:intergenic | 30.0% | |
| TCCCTAACATCTTAATATCA+GGG | - | chr5_3:62250305-62250324 | Msa0823570:intron | 30.0% | |
| TCCCTGATATTAAGATGTTA+GGG | + | chr5_3:62250309-62250328 | None:intergenic | 30.0% | |
| AATAAGAAGGGTGGTAAAAA+TGG | - | chr5_3:62250364-62250383 | Msa0823570:intron | 30.0% | |
| TTAACATGTGTGATAAAGAG+AGG | + | chr5_3:62250475-62250494 | None:intergenic | 30.0% | |
| !! | TGACATAGGTTATTTTACCT+GGG | + | chr5_3:62250693-62250712 | None:intergenic | 30.0% |
| !! | TTGACATAGGTTATTTTACC+TGG | + | chr5_3:62250694-62250713 | None:intergenic | 30.0% |
| ACCTATGTCAAACTTTAACA+AGG | - | chr5_3:62250703-62250722 | Msa0823570:intron | 30.0% | |
| TAAATGAACAGCTGTAGATT+AGG | + | chr5_3:62250758-62250777 | None:intergenic | 30.0% | |
| GAAAGGAAATCTAATATCTG+TGG | + | chr5_3:62250790-62250809 | None:intergenic | 30.0% | |
| TTTCTTGGTTACAAAAGGAA+AGG | + | chr5_3:62250807-62250826 | None:intergenic | 30.0% | |
| TCATAGAATCAGAATCAGAT+AGG | - | chr5_3:62251052-62251071 | Msa0823570:intron | 30.0% | |
| GTGATATCAAACTCCAATTA+TGG | - | chr5_3:62251172-62251191 | Msa0823570:intron | 30.0% | |
| TGAGATGGAAAATATTCTCT+TGG | - | chr5_3:62251208-62251227 | Msa0823570:intron | 30.0% | |
| ! | CCGATTTTCTTATCTTCTAT+AGG | + | chr5_3:62251710-62251729 | None:intergenic | 30.0% |
| GGAAAGAATAGTATAAACTC+TGG | - | chr5_3:62251729-62251748 | Msa0823570:CDS | 30.0% | |
| ACAATGTTCAAGTATTTAGG+TGG | - | chr5_3:62251785-62251804 | Msa0823570:CDS | 30.0% | |
| ! | TCAAGTATTTAGGTGGTTTT+TGG | - | chr5_3:62251792-62251811 | Msa0823570:CDS | 30.0% |
| AGAAAAAATCAACGCAAACA+GGG | + | chr5_3:62252292-62252311 | None:intergenic | 30.0% | |
| AAGAAAAAATCAACGCAAAC+AGG | + | chr5_3:62252293-62252312 | None:intergenic | 30.0% | |
| !!! | TGCGTTGATTTTTTCTTACT+TGG | - | chr5_3:62252296-62252315 | Msa0823570:intron | 30.0% |
| ! | TTGTTGAGATATAGCTTTTG+GGG | - | chr5_3:62252341-62252360 | Msa0823570:intron | 30.0% |
| ACACAACAAAAATATGCAGA+AGG | + | chr5_3:62252384-62252403 | None:intergenic | 30.0% | |
| !! | TGCATATTTTTGTTGTGTGT+GGG | - | chr5_3:62252386-62252405 | Msa0823570:intron | 30.0% |
| ! | AACTGTTTTGCATTACAACA+AGG | + | chr5_3:62252413-62252432 | None:intergenic | 30.0% |
| ! | CATAATGGAAGCCTTAATTA+GGG | + | chr5_3:62252485-62252504 | None:intergenic | 30.0% |
| ! | TCATAATGGAAGCCTTAATT+AGG | + | chr5_3:62252486-62252505 | None:intergenic | 30.0% |
| CAAAATCATGCAGAGATAAT+TGG | + | chr5_3:62252731-62252750 | None:intergenic | 30.0% | |
| AAGAAGTGAAGTTAATAGAG+TGG | - | chr5_3:62253119-62253138 | Msa0823570:intron | 30.0% | |
| AGTTTAAGTGTACAGAGAAT+CGG | - | chr5_3:62253363-62253382 | Msa0823570:intron | 30.0% | |
| CTTCTGTTGAAAAAACTTGA+AGG | + | chr5_3:62253513-62253532 | None:intergenic | 30.0% | |
| AATCTCTCAGCAATAAAATC+AGG | + | chr5_3:62253558-62253577 | None:intergenic | 30.0% | |
| GAAAAGATTCTAGATGAACT+GGG | - | chr5_3:62253615-62253634 | Msa0823570:intron | 30.0% | |
| !! | CTCTCTGATTTTAATATTGC+TGG | - | chr5_3:62253705-62253724 | Msa0823570:CDS | 30.0% |
| GCTGGTAATAAAGATATGAA+TGG | - | chr5_3:62253723-62253742 | Msa0823570:CDS | 30.0% | |
| TCTTGGTTGTAAATGCAAAA+AGG | - | chr5_3:62253929-62253948 | Msa0823570:five_prime_UTR | 30.0% | |
| CTTGGTTGTAAATGCAAAAA+GGG | - | chr5_3:62253930-62253949 | Msa0823570:five_prime_UTR | 30.0% | |
| ! | ATCTTTTGTCTTCTCAAACT+TGG | + | chr5_3:62253958-62253977 | None:intergenic | 30.0% |
| !! | AACGAACACTAAGCTTTGTT+TGG | + | chr5_3:62248931-62248950 | None:intergenic | 35.0% |
| ATTGATGAACAAATGGAGGA+AGG | + | chr5_3:62248954-62248973 | None:intergenic | 35.0% | |
| CGAAATTGATGAACAAATGG+AGG | + | chr5_3:62248958-62248977 | None:intergenic | 35.0% | |
| TAAAATGGATCTTGAGCTGA+GGG | + | chr5_3:62249029-62249048 | None:intergenic | 35.0% | |
| TGGATCATGCAATAAAGTGA+TGG | + | chr5_3:62249156-62249175 | None:intergenic | 35.0% | |
| CATCAACAAAAAAGGGAACT+GGG | + | chr5_3:62249288-62249307 | None:intergenic | 35.0% | |
| CATCAACAAAAATGGGAACT+GGG | + | chr5_3:62249441-62249460 | None:intergenic | 35.0% | |
| CATAGTTACAGATCAGAACT+GGG | + | chr5_3:62249547-62249566 | None:intergenic | 35.0% | |
| TCATAGTTACAGATCAGAAC+TGG | + | chr5_3:62249548-62249567 | None:intergenic | 35.0% | |
| TGAGCATTTGAACCTTTCAA+AGG | - | chr5_3:62249688-62249707 | Msa0823570:intron | 35.0% | |
| TACATTGACCAAATTGTGGA+AGG | + | chr5_3:62249777-62249796 | None:intergenic | 35.0% | |
| AACTAACAAATCCCAGTTCA+TGG | + | chr5_3:62249865-62249884 | None:intergenic | 35.0% | |
| ACTTAAGGTATGTCTGAGTT+TGG | - | chr5_3:62249896-62249915 | Msa0823570:intron | 35.0% | |
| ATCAAAGAAAAACAAGGCTG+GGG | + | chr5_3:62250166-62250185 | None:intergenic | 35.0% | |
| CAATCAAAGAAAAACAAGGC+TGG | + | chr5_3:62250168-62250187 | None:intergenic | 35.0% | |
| GTCCCTAACATCTTAATATC+AGG | - | chr5_3:62250304-62250323 | Msa0823570:intron | 35.0% | |
| GTCCCTGATATTAAGATGTT+AGG | + | chr5_3:62250310-62250329 | None:intergenic | 35.0% | |
| ATGGAGTCTAGTGAAAATGT+TGG | - | chr5_3:62250383-62250402 | Msa0823570:intron | 35.0% | |
| AGCATTGCTAATATTTGACG+TGG | - | chr5_3:62250494-62250513 | Msa0823570:intron | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | - | chr5_3:62250571-62250590 | Msa0823570:intron | 35.0% | |
| ATGAAGTGGAGATTGAAAAC+CGG | - | chr5_3:62250642-62250661 | Msa0823570:intron | 35.0% | |
| ! | GCCTTGTTAAAGTTTGACAT+AGG | + | chr5_3:62250707-62250726 | None:intergenic | 35.0% |
| GTCAAACTTTAACAAGGCTA+AGG | - | chr5_3:62250709-62250728 | Msa0823570:intron | 35.0% | |
| CAGCAGATAAAGAAAAGGAA+TGG | + | chr5_3:62250840-62250859 | None:intergenic | 35.0% | |
| TCATGCAGCAGATAAAGAAA+AGG | + | chr5_3:62250845-62250864 | None:intergenic | 35.0% | |
| ACAACTCATGCTAGTATAAG+TGG | - | chr5_3:62250943-62250962 | Msa0823570:intron | 35.0% | |
| CAACTCATGCTAGTATAAGT+GGG | - | chr5_3:62250944-62250963 | Msa0823570:intron | 35.0% | |
| !!! | GGACACTTTTTTGTATGAGA+TGG | - | chr5_3:62251193-62251212 | Msa0823570:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr5_3:62251433-62251452 | Msa0823570:intron | 35.0% | |
| TATAATGCACTCTGCTTAAG+AGG | + | chr5_3:62251481-62251500 | None:intergenic | 35.0% | |
| AGTACAAAGGATCTTACATC+TGG | + | chr5_3:62251517-62251536 | None:intergenic | 35.0% | |
| ! | AACAATTAGCACGGATTACA+AGG | + | chr5_3:62251615-62251634 | None:intergenic | 35.0% |
| AGACTGAGAAACTGTATTGA+AGG | + | chr5_3:62252237-62252256 | None:intergenic | 35.0% | |
| TATCTCAACAAAAGAAGCCA+CGG | + | chr5_3:62252332-62252351 | None:intergenic | 35.0% | |
| ! | TGTTGAGATATAGCTTTTGG+GGG | - | chr5_3:62252342-62252361 | Msa0823570:intron | 35.0% |
| !! | CTGCATATTTTTGTTGTGTG+TGG | - | chr5_3:62252385-62252404 | Msa0823570:intron | 35.0% |
| TAATGCAAAACAGTTGCTGT+TGG | - | chr5_3:62252418-62252437 | Msa0823570:intron | 35.0% | |
| ! | AATGCAAAACAGTTGCTGTT+GGG | - | chr5_3:62252419-62252438 | Msa0823570:intron | 35.0% |
| TTAAGGCTTCCATTATGAGT+TGG | - | chr5_3:62252488-62252507 | Msa0823570:intron | 35.0% | |
| ! | TTCAAAAGTTTGAGGTGCAT+GGG | + | chr5_3:62252565-62252584 | None:intergenic | 35.0% |
| ! | TTTCAAAAGTTTGAGGTGCA+TGG | + | chr5_3:62252566-62252585 | None:intergenic | 35.0% |
| CTCTTTACTACACTGTTGAA+TGG | - | chr5_3:62252778-62252797 | Msa0823570:intron | 35.0% | |
| TACTGTTGAAAATCAACTGC+AGG | + | chr5_3:62252814-62252833 | None:intergenic | 35.0% | |
| !! | TTTTACTTTGTTTGTGGGGT+TGG | - | chr5_3:62252918-62252937 | Msa0823570:intron | 35.0% |
| ! | TTTACTTTGTTTGTGGGGTT+GGG | - | chr5_3:62252919-62252938 | Msa0823570:intron | 35.0% |
| AAAGAACATCCATTCCTAGA+AGG | + | chr5_3:62253262-62253281 | None:intergenic | 35.0% | |
| !! | GCTTTGAAAAGTAGTAGACT+AGG | - | chr5_3:62253466-62253485 | Msa0823570:intron | 35.0% |
| TGTCAAAATCTTGATGCTTC+AGG | - | chr5_3:62253593-62253612 | Msa0823570:intron | 35.0% | |
| GGAAAAGATTCTAGATGAAC+TGG | - | chr5_3:62253614-62253633 | Msa0823570:intron | 35.0% | |
| TTGGACAAAATCTAGACGAT+TGG | + | chr5_3:62253661-62253680 | None:intergenic | 35.0% | |
| ATTTCAGAAAAGAGTGGCAA+TGG | - | chr5_3:62253798-62253817 | Msa0823570:five_prime_UTR | 35.0% | |
| ! | GGGTTAATTAAGGGTGTGTT+TGG | + | chr5_3:62248812-62248831 | None:intergenic | 40.0% |
| ! | TCTGGAATTGGGAATTGGAA+TGG | + | chr5_3:62248989-62249008 | None:intergenic | 40.0% |
| ! | CAGAATCTGGAATTGGGAAT+TGG | + | chr5_3:62248994-62249013 | None:intergenic | 40.0% |
| GTAAAATGGATCTTGAGCTG+AGG | + | chr5_3:62249030-62249049 | None:intergenic | 40.0% | |
| GCATCAACAAAAAAGGGAAC+TGG | + | chr5_3:62249289-62249308 | None:intergenic | 40.0% | |
| GCATCAACAAAAATGGGAAC+TGG | + | chr5_3:62249442-62249461 | None:intergenic | 40.0% | |
| TGGGAAAACACTTCTGATAC+TGG | - | chr5_3:62249665-62249684 | Msa0823570:intron | 40.0% | |
| CAGCAAGAACTTCCTTTGAA+AGG | + | chr5_3:62249703-62249722 | None:intergenic | 40.0% | |
| TAGTGAAGCCTTCCACAATT+TGG | - | chr5_3:62249766-62249785 | Msa0823570:intron | 40.0% | |
| TTATCATCGCTTCCATGAAC+TGG | - | chr5_3:62249850-62249869 | Msa0823570:intron | 40.0% | |
| TATCATCGCTTCCATGAACT+GGG | - | chr5_3:62249851-62249870 | Msa0823570:intron | 40.0% | |
| GGAGTTTAATCTAGATCAGC+CGG | - | chr5_3:62249917-62249936 | Msa0823570:intron | 40.0% | |
| ! | TTTTCACCTTTCCTACCACA+GGG | + | chr5_3:62250199-62250218 | None:intergenic | 40.0% |
| ! | TTTTTCACCTTTCCTACCAC+AGG | + | chr5_3:62250200-62250219 | None:intergenic | 40.0% |
| AGTTTGAACAGGTTGTATCG+CGG | + | chr5_3:62250531-62250550 | None:intergenic | 40.0% | |
| CACATTTCAGCAGTTTGAAC+AGG | + | chr5_3:62250542-62250561 | None:intergenic | 40.0% | |
| TAGCATCTAGAGATCCTTCT+TGG | - | chr5_3:62250609-62250628 | Msa0823570:intron | 40.0% | |
| TCTAGAGATCCTTCTTGGTA+TGG | - | chr5_3:62250614-62250633 | Msa0823570:intron | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | + | chr5_3:62250626-62250645 | None:intergenic | 40.0% | |
| !! | TTGGTATGGCATTGATGAAG+TGG | - | chr5_3:62250628-62250647 | Msa0823570:intron | 40.0% |
| GCACACAATTAAGAGAACAG+TGG | - | chr5_3:62250897-62250916 | Msa0823570:intron | 40.0% | |
| ATTAAGAGAACAGTGGAAGC+TGG | - | chr5_3:62250904-62250923 | Msa0823570:intron | 40.0% | |
| TAGTATAAGTGGGATGCACA+GGG | - | chr5_3:62250954-62250973 | Msa0823570:intron | 40.0% | |
| GACGTACTTTGATGAGAATC+TGG | + | chr5_3:62250994-62251013 | None:intergenic | 40.0% | |
| AAGTCTAACCAATATGCCTC+TGG | - | chr5_3:62251015-62251034 | Msa0823570:intron | 40.0% | |
| AGTCTAACCAATATGCCTCT+GGG | - | chr5_3:62251016-62251035 | Msa0823570:intron | 40.0% | |
| GAAATCATCATTATCCCCAG+AGG | + | chr5_3:62251034-62251053 | None:intergenic | 40.0% | |
| GTCAAATAAATTGGGACGGA+GGG | + | chr5_3:62251242-62251261 | None:intergenic | 40.0% | |
| AGGGGTCAAATAAATTGGGA+CGG | + | chr5_3:62251246-62251265 | None:intergenic | 40.0% | |
| TCCCAATTTATTTGACCCCT+TGG | - | chr5_3:62251246-62251265 | Msa0823570:intron | 40.0% | |
| GCCAAGGGGTCAAATAAATT+GGG | + | chr5_3:62251250-62251269 | None:intergenic | 40.0% | |
| AGCCAAGGGGTCAAATAAAT+TGG | + | chr5_3:62251251-62251270 | None:intergenic | 40.0% | |
| ATCTGTGTGAAATGAGCCAA+GGG | + | chr5_3:62251265-62251284 | None:intergenic | 40.0% | |
| AATCTGTGTGAAATGAGCCA+AGG | + | chr5_3:62251266-62251285 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr5_3:62251434-62251453 | Msa0823570:intron | 40.0% | |
| TCAAAAGAGAATACACACGG+TGG | + | chr5_3:62251977-62251996 | None:intergenic | 40.0% | |
| GCGTCAAAAGAGAATACACA+CGG | + | chr5_3:62251980-62251999 | None:intergenic | 40.0% | |
| GTCCACAATTGTTCCAGTTA+CGG | - | chr5_3:62252045-62252064 | Msa0823570:intron | 40.0% | |
| AAAACAATGTCGCACAGGAA+CGG | + | chr5_3:62252081-62252100 | None:intergenic | 40.0% | |
| ATCTCAACAAAAGAAGCCAC+GGG | + | chr5_3:62252331-62252350 | None:intergenic | 40.0% | |
| ! | AAAACAGTTGCTGTTGGGTT+GGG | - | chr5_3:62252424-62252443 | Msa0823570:intron | 40.0% |
| TGCATCTCATGTTTAAGCCA+GGG | - | chr5_3:62252450-62252469 | Msa0823570:intron | 40.0% | |
| ! | TTCCATTATGAGTTGGCAGT+AGG | - | chr5_3:62252495-62252514 | Msa0823570:intron | 40.0% |
| ! | TCCATTATGAGTTGGCAGTA+GGG | - | chr5_3:62252496-62252515 | Msa0823570:intron | 40.0% |
| ATTATGCTCAACAGTGTGAC+TGG | - | chr5_3:62252630-62252649 | Msa0823570:intron | 40.0% | |
| AAAACAGAAAACCACCTACG+AGG | - | chr5_3:62253226-62253245 | Msa0823570:intron | 40.0% | |
| TTAAGTGTACAGAGAATCGG+AGG | - | chr5_3:62253366-62253385 | Msa0823570:intron | 40.0% | |
| ACAATACATGAAGAGCTCCT+TGG | - | chr5_3:62253399-62253418 | Msa0823570:intron | 40.0% | |
| CAATACATGAAGAGCTCCTT+GGG | - | chr5_3:62253400-62253419 | Msa0823570:intron | 40.0% | |
| AGATGAACTGGGAAATGAGA+TGG | - | chr5_3:62253626-62253645 | Msa0823570:intron | 40.0% | |
| CAGAGAGCAAAATCGAAAAG+CGG | + | chr5_3:62253692-62253711 | None:intergenic | 40.0% | |
| ! | GATGATGATATGTGGTTTGC+TGG | - | chr5_3:62253852-62253871 | Msa0823570:five_prime_UTR | 40.0% |
| CAAGACATTCAGAAACGACT+AGG | + | chr5_3:62253914-62253933 | None:intergenic | 40.0% | |
| CTAGTCGTTTCTGAATGTCT+TGG | - | chr5_3:62253912-62253931 | Msa0823570:five_prime_UTR | 40.0% | |
| ! | AAGGAAGTTCTTGCTGCTTG+TGG | - | chr5_3:62249707-62249726 | Msa0823570:intron | 45.0% |
| !! | CTGCTTGTGGAAGTATTGAG+TGG | - | chr5_3:62249720-62249739 | Msa0823570:intron | 45.0% |
| !! | TTGTGGAAGTATTGAGTGGC+AGG | - | chr5_3:62249724-62249743 | Msa0823570:intron | 45.0% |
| GTTTAATCTAGATCAGCCGG+AGG | - | chr5_3:62249920-62249939 | Msa0823570:intron | 45.0% | |
| AAAGAAAAACAAGGCTGGGG+AGG | + | chr5_3:62250163-62250182 | None:intergenic | 45.0% | |
| TTGATTGTATCCCTTCCCTG+TGG | - | chr5_3:62250181-62250200 | Msa0823570:intron | 45.0% | |
| TAAGTGTGTGCTTGTGGAGT+TGG | + | chr5_3:62250426-62250445 | None:intergenic | 45.0% | |
| GTAGACTAAGTGTGTGCTTG+TGG | + | chr5_3:62250432-62250451 | None:intergenic | 45.0% | |
| CATGTGTGATAAAGAGAGGC+TGG | + | chr5_3:62250471-62250490 | None:intergenic | 45.0% | |
| AAGTGGAGATTGAAAACCGG+AGG | - | chr5_3:62250645-62250664 | Msa0823570:intron | 45.0% | |
| AGAACAGTGGAAGCTGGAAA+GGG | - | chr5_3:62250910-62250929 | Msa0823570:intron | 45.0% | |
| CTAGTATAAGTGGGATGCAC+AGG | - | chr5_3:62250953-62250972 | Msa0823570:intron | 45.0% | |
| GGATGCACAGGGAATTAATG+AGG | - | chr5_3:62250965-62250984 | Msa0823570:intron | 45.0% | |
| GTCTAACCAATATGCCTCTG+GGG | - | chr5_3:62251017-62251036 | Msa0823570:intron | 45.0% | |
| ! | CATTATCCCCAGAGGCATAT+TGG | + | chr5_3:62251026-62251045 | None:intergenic | 45.0% |
| GGTCAAATAAATTGGGACGG+AGG | + | chr5_3:62251243-62251262 | None:intergenic | 45.0% | |
| TCTGTGTGAAATGAGCCAAG+GGG | + | chr5_3:62251264-62251283 | None:intergenic | 45.0% | |
| CAATTGTGGACGAACGGAAA+TGG | + | chr5_3:62252036-62252055 | None:intergenic | 45.0% | |
| CTGGAACAATTGTGGACGAA+CGG | + | chr5_3:62252042-62252061 | None:intergenic | 45.0% | |
| TGCCGTAACTGGAACAATTG+TGG | + | chr5_3:62252050-62252069 | None:intergenic | 45.0% | |
| TTGCGCAACATCGTTTCTGT+CGG | - | chr5_3:62252100-62252119 | Msa0823570:CDS | 45.0% | |
| AGGAACGTTACTCACAGGAA+AGG | + | chr5_3:62252131-62252150 | None:intergenic | 45.0% | |
| GGTCGATACAGTGAAGGTTA+CGG | + | chr5_3:62252182-62252201 | None:intergenic | 45.0% | |
| !! | TAAAGCGTCGCACACAATGA+AGG | + | chr5_3:62252211-62252230 | None:intergenic | 45.0% |
| TCAACGCAAACAGGGTAACA+TGG | + | chr5_3:62252284-62252303 | None:intergenic | 45.0% | |
| TACTTGGCATTGTTATCCCG+TGG | - | chr5_3:62252312-62252331 | Msa0823570:intron | 45.0% | |
| !! | TGAGATATAGCTTTTGGGGG+TGG | - | chr5_3:62252345-62252364 | Msa0823570:intron | 45.0% |
| ! | CAAAACAGTTGCTGTTGGGT+TGG | - | chr5_3:62252423-62252442 | Msa0823570:intron | 45.0% |
| ! | AAACAGTTGCTGTTGGGTTG+GGG | - | chr5_3:62252425-62252444 | Msa0823570:intron | 45.0% |
| CTGCATCTCATGTTTAAGCC+AGG | - | chr5_3:62252449-62252468 | Msa0823570:intron | 45.0% | |
| ATCTCATGTTTAAGCCAGGG+AGG | - | chr5_3:62252453-62252472 | Msa0823570:intron | 45.0% | |
| TCTCATGTTTAAGCCAGGGA+GGG | - | chr5_3:62252454-62252473 | Msa0823570:intron | 45.0% | |
| GGAGGGTGATTCCCTAATTA+AGG | - | chr5_3:62252471-62252490 | Msa0823570:intron | 45.0% | |
| TCCCTACTGCCAACTCATAA+TGG | + | chr5_3:62252500-62252519 | None:intergenic | 45.0% | |
| ! | TTATGAGTTGGCAGTAGGGA+AGG | - | chr5_3:62252500-62252519 | Msa0823570:intron | 45.0% |
| ! | TATGAGTTGGCAGTAGGGAA+GGG | - | chr5_3:62252501-62252520 | Msa0823570:intron | 45.0% |
| !! | TTGTGGGGTTGGGTTTGTTT+TGG | - | chr5_3:62252929-62252948 | Msa0823570:intron | 45.0% |
| CATTCCTAGAAGGTTCCCTA+AGG | + | chr5_3:62253252-62253271 | None:intergenic | 45.0% | |
| ! | CTTAGGGAACCTTCTAGGAA+TGG | - | chr5_3:62253250-62253269 | Msa0823570:intron | 45.0% |
| TACTGCTATTGATAGGCAGC+AGG | - | chr5_3:62253320-62253339 | Msa0823570:intron | 45.0% | |
| ATATATCAGCTACCTGCCCA+AGG | + | chr5_3:62253419-62253438 | None:intergenic | 45.0% | |
| TCGAAAAGCGGAAACTCACT+TGG | + | chr5_3:62253680-62253699 | None:intergenic | 45.0% | |
| ! | AGTGGCAATGGTGATGAAGA+AGG | - | chr5_3:62253810-62253829 | Msa0823570:five_prime_UTR | 45.0% |
| ATGAAGAAGGCCAGTGCAAA+GGG | - | chr5_3:62253823-62253842 | Msa0823570:five_prime_UTR | 45.0% | |
| ! | GGGCAGATGATGATGATATG+TGG | - | chr5_3:62253844-62253863 | Msa0823570:five_prime_UTR | 45.0% |
| !!! | TATTTTATCATTAAAAAAAA+GGG | + | chr5_3:62248832-62248851 | None:intergenic | 5.0% |
| !!! | ATATTTTATCATTAAAAAAA+AGG | + | chr5_3:62248833-62248852 | None:intergenic | 5.0% |
| CATGGGAAGATCACTTCCTC+CGG | + | chr5_3:62249939-62249958 | None:intergenic | 50.0% | |
| TTGTATCCCTTCCCTGTGGT+AGG | - | chr5_3:62250185-62250204 | Msa0823570:intron | 50.0% | |
| ACCTTTCCTACCACAGGGAA+GGG | + | chr5_3:62250194-62250213 | None:intergenic | 50.0% | |
| TGTGATAAAGAGAGGCTGGC+AGG | + | chr5_3:62250467-62250486 | None:intergenic | 50.0% | |
| AGGTTGTATCGCGGCAGAAA+AGG | + | chr5_3:62250522-62250541 | None:intergenic | 50.0% | |
| TGGAGATTGAAAACCGGAGG+AGG | - | chr5_3:62250648-62250667 | Msa0823570:intron | 50.0% | |
| AGATTGAAAACCGGAGGAGG+TGG | - | chr5_3:62250651-62250670 | Msa0823570:intron | 50.0% | |
| GAGAACAGTGGAAGCTGGAA+AGG | - | chr5_3:62250909-62250928 | Msa0823570:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr5_3:62251438-62251457 | Msa0823570:intron | 50.0% | |
| GCGCAAAAACAATGTCGCAC+AGG | + | chr5_3:62252086-62252105 | None:intergenic | 50.0% | |
| TCGCACACAATGAAGGCTAG+CGG | + | chr5_3:62252204-62252223 | None:intergenic | 50.0% | |
| !! | AACAGTTGCTGTTGGGTTGG+GGG | - | chr5_3:62252426-62252445 | Msa0823570:intron | 50.0% |
| AATTAGGGAATCACCCTCCC+TGG | + | chr5_3:62252470-62252489 | None:intergenic | 50.0% | |
| AAAACCACCTACGAGGCCTT+AGG | - | chr5_3:62253233-62253252 | Msa0823570:intron | 50.0% | |
| AAACCACCTACGAGGCCTTA+GGG | - | chr5_3:62253234-62253253 | Msa0823570:intron | 50.0% | |
| TATTGATAGGCAGCAGGACG+AGG | - | chr5_3:62253326-62253345 | Msa0823570:intron | 50.0% | |
| ! | GTACAGAGAATCGGAGGTGT+TGG | - | chr5_3:62253372-62253391 | Msa0823570:intron | 50.0% |
| GATGAAGAAGGCCAGTGCAA+AGG | - | chr5_3:62253822-62253841 | Msa0823570:five_prime_UTR | 50.0% | |
| TGAAGAAGGCCAGTGCAAAG+GGG | - | chr5_3:62253824-62253843 | Msa0823570:five_prime_UTR | 50.0% | |
| AAAAACAAGGCTGGGGAGGC+GGG | + | chr5_3:62250159-62250178 | None:intergenic | 55.0% | |
| GAAAAACAAGGCTGGGGAGG+CGG | + | chr5_3:62250160-62250179 | None:intergenic | 55.0% | |
| TCCCTTCCCTGTGGTAGGAA+AGG | - | chr5_3:62250190-62250209 | Msa0823570:intron | 55.0% | |
| CACCTTTCCTACCACAGGGA+AGG | + | chr5_3:62250195-62250214 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr5_3:62251442-62251461 | Msa0823570:intron | 55.0% | |
| AACTAGTACTCCCTCCGTCC+CGG | + | chr5_3:62251455-62251474 | None:intergenic | 55.0% | |
| TGGACGAACGGAAATGGCAG+GGG | + | chr5_3:62252030-62252049 | None:intergenic | 55.0% | |
| GTGGACGAACGGAAATGGCA+GGG | + | chr5_3:62252031-62252050 | None:intergenic | 55.0% | |
| TGTGGACGAACGGAAATGGC+AGG | + | chr5_3:62252032-62252051 | None:intergenic | 55.0% | |
| ACAATGTCGCACAGGAACGG+TGG | + | chr5_3:62252078-62252097 | None:intergenic | 55.0% | |
| CCTGCAGGAACGTTACTCAC+AGG | + | chr5_3:62252136-62252155 | None:intergenic | 55.0% | |
| CCTGTGAGTAACGTTCCTGC+AGG | - | chr5_3:62252133-62252152 | Msa0823570:CDS | 55.0% | |
| AGGTTACGGCATCACGAGCA+GGG | + | chr5_3:62252168-62252187 | None:intergenic | 55.0% | |
| AAGGTTACGGCATCACGAGC+AGG | + | chr5_3:62252169-62252188 | None:intergenic | 55.0% | |
| ! | CTAGCGGGTCGATACAGTGA+AGG | + | chr5_3:62252188-62252207 | None:intergenic | 55.0% |
| CGCACACAATGAAGGCTAGC+GGG | + | chr5_3:62252203-62252222 | None:intergenic | 55.0% | |
| GGTAACATGGAGCGCAGGAA+GGG | + | chr5_3:62252271-62252290 | None:intergenic | 55.0% | |
| AACAGGGTAACATGGAGCGC+AGG | + | chr5_3:62252276-62252295 | None:intergenic | 55.0% | |
| AAGGTTCCCTAAGGCCTCGT+AGG | + | chr5_3:62253243-62253262 | None:intergenic | 55.0% | |
| GAGGCCTTAGGGAACCTTCT+AGG | - | chr5_3:62253245-62253264 | Msa0823570:intron | 55.0% | |
| ACATGAAGAGCTCCTTGGGC+AGG | - | chr5_3:62253404-62253423 | Msa0823570:intron | 55.0% | |
| CATCATCTGCCCCTTTGCAC+TGG | + | chr5_3:62253836-62253855 | None:intergenic | 55.0% | |
| AAAACAAGGCTGGGGAGGCG+GGG | + | chr5_3:62250158-62250177 | None:intergenic | 60.0% | |
| CATTGCTGGTCCACCTCCTC+CGG | + | chr5_3:62250664-62250683 | None:intergenic | 60.0% | |
| ! | TACCTGGGTGCGAGCATTGC+TGG | + | chr5_3:62250678-62250697 | None:intergenic | 60.0% |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr5_3:62251441-62251460 | Msa0823570:intron | 60.0% | |
| GACGAACGGAAATGGCAGGG+GGG | + | chr5_3:62252028-62252047 | None:intergenic | 60.0% | |
| GGACGAACGGAAATGGCAGG+GGG | + | chr5_3:62252029-62252048 | None:intergenic | 60.0% | |
| ATGTCGCACAGGAACGGTGG+CGG | + | chr5_3:62252075-62252094 | None:intergenic | 60.0% | |
| TACGGCATCACGAGCAGGGA+AGG | + | chr5_3:62252164-62252183 | None:intergenic | 60.0% | |
| AGCGCAGGAAGGGAATGGTG+TGG | + | chr5_3:62252261-62252280 | None:intergenic | 60.0% | |
| CATGGAGCGCAGGAAGGGAA+TGG | + | chr5_3:62252266-62252285 | None:intergenic | 60.0% | |
| GGGTAACATGGAGCGCAGGA+AGG | + | chr5_3:62252272-62252291 | None:intergenic | 60.0% | |
| GTTCCCTAAGGCCTCGTAGG+TGG | + | chr5_3:62253240-62253259 | None:intergenic | 60.0% | |
| GACCAGCAATGCTCGCACCC+AGG | - | chr5_3:62250673-62250692 | Msa0823570:intron | 65.0% | |
| AAGGCTGGGGAGGCGGGGAA+AGG | + | chr5_3:62250153-62250172 | None:intergenic | 70.0% | |
| GCAGGGAAGGCTGTGCCTGC+AGG | + | chr5_3:62252151-62252170 | None:intergenic | 70.0% | |
| ! | CGGTGGCGGCGTGCCGTAAC+TGG | + | chr5_3:62252061-62252080 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 62248787 | 62253980 | 62248787 | ID=Msa0823570;Name=Msa0823570 |
| chr5_3 | mRNA | 62248787 | 62253980 | 62248787 | ID=Msa0823570-mRNA-1;Parent=Msa0823570;Name=Msa0823570-mRNA-1;_AED=0.14;_eAED=0.28;_QI=236|0.83|0.85|1|0.83|0.71|7|0|267 |
| chr5_3 | exon | 62248787 | 62248957 | 62248787 | ID=Msa0823570-mRNA-1:exon:19376;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62249087 | 62249152 | 62249087 | ID=Msa0823570-mRNA-1:exon:19375;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62249342 | 62249432 | 62249342 | ID=Msa0823570-mRNA-1:exon:19374;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62251676 | 62251872 | 62251676 | ID=Msa0823570-mRNA-1:exon:19373;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62252073 | 62252186 | 62252073 | ID=Msa0823570-mRNA-1:exon:19372;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62253022 | 62253132 | 62253022 | ID=Msa0823570-mRNA-1:exon:19371;Parent=Msa0823570-mRNA-1 |
| chr5_3 | exon | 62253691 | 62253980 | 62253691 | ID=Msa0823570-mRNA-1:exon:19370;Parent=Msa0823570-mRNA-1 |
| chr5_3 | five_prime_UTR | 62253745 | 62253980 | 62253745 | ID=Msa0823570-mRNA-1:five_prime_utr;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62253691 | 62253744 | 62253691 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62253022 | 62253132 | 62253022 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62252073 | 62252186 | 62252073 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62251676 | 62251872 | 62251676 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62249342 | 62249432 | 62249342 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62249087 | 62249152 | 62249087 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| chr5_3 | CDS | 62248787 | 62248957 | 62248787 | ID=Msa0823570-mRNA-1:cds;Parent=Msa0823570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
