AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033880 MtrunA17_Chr1g0194261 100.000 181 0 0 1 181 1 181 1.94e-135 375
Msa0033880 MtrunA17_Chr5g0413451 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0033880 MtrunA17_Chr5g0413441 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0033880 MtrunA17_Chr7g0270301 98.895 181 2 0 1 181 1 181 1.72e-134 373
Msa0033880 MtrunA17_Chr6g0450081 98.895 181 2 0 1 181 1 181 2.15e-134 373
Msa0033880 MtrunA17_Chr5g0401761 86.667 180 24 0 1 180 1 180 3.16e-120 337
Msa0033880 MtrunA17_Chr4g0072861 63.277 177 65 0 1 177 1 177 4.55e-84 246
Msa0033880 MtrunA17_Chr5g0395631 61.582 177 68 0 1 177 1 177 5.74e-83 243
Msa0033880 MtrunA17_Chr4g0039591 60.452 177 70 0 1 177 1 177 1.18e-80 238
Msa0033880 MtrunA17_Chr5g0395641 55.495 182 79 1 1 180 1 182 1.10e-75 224
Msa0033880 MtrunA17_Chr1g0188111 51.934 181 87 0 1 181 1 181 1.16e-67 204
Msa0033880 MtrunA17_Chr8g0373271 48.485 165 82 3 18 180 17 180 7.80e-50 159
Msa0033880 MtrunA17_Chr2g0287721 34.831 178 105 2 5 173 5 180 3.73e-37 127
Msa0033880 MtrunA17_Chr5g0434561 34.659 176 112 2 1 173 1 176 3.10e-31 111
Msa0033880 MtrunA17_Chr5g0395651 63.291 79 27 1 1 77 1 79 7.78e-31 107
Msa0033880 MtrunA17_Chr5g0401071 32.065 184 122 2 1 181 1 184 3.01e-30 108
Msa0033880 MtrunA17_Chr4g0012371 31.847 157 106 1 18 173 1 157 4.38e-26 97.8
Msa0033880 MtrunA17_Chr2g0294701 31.638 177 105 2 15 177 18 192 8.39e-25 95.5
Msa0033880 MtrunA17_Chr7g0271761 31.073 177 106 2 15 177 18 192 2.12e-24 94.4
Msa0033880 MtrunA17_Chr4g0068171 31.638 177 105 2 15 177 18 192 7.00e-23 90.5
Msa0033880 MtrunA17_Chr5g0395671 51.020 49 24 0 132 180 44 92 9.27e-13 61.2
Msa0033880 MtrunA17_Chr1g0180291 34.118 85 52 1 18 98 15 99 1.89e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033880 AT1G10630.1 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0033880 AT1G10630.2 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0033880 AT5G14670.2 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0033880 AT5G14670.3 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0033880 AT3G62290.3 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0033880 AT3G62290.1 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0033880 AT3G62290.2 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0033880 AT1G23490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.2 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.7 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.4 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.3 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.6 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT1G70490.5 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0033880 AT2G47170.2 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0033880 AT2G47170.1 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0033880 AT2G47170.3 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0033880 AT5G14670.1 98.343 181 3 0 1 181 1 181 6.10e-133 370
Msa0033880 AT2G15310.1 67.403 181 59 0 1 181 1 181 3.14e-91 265
Msa0033880 AT2G24765.1 62.147 177 67 0 1 177 1 177 2.10e-84 247
Msa0033880 AT5G17060.2 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0033880 AT5G17060.1 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0033880 AT3G03120.1 59.887 177 71 0 1 177 1 177 1.26e-80 238
Msa0033880 AT3G22950.1 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0033880 AT3G22950.2 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0033880 AT2G24765.2 64.844 128 45 0 1 128 1 128 1.76e-60 184
Msa0033880 AT3G03120.2 62.308 130 49 0 1 130 1 130 1.35e-59 182
Msa0033880 AT1G02430.1 48.936 188 82 5 1 176 1 186 6.81e-57 177
Msa0033880 AT1G02440.1 45.699 186 91 4 1 176 1 186 2.57e-55 173
Msa0033880 AT2G18390.1 48.485 165 82 3 18 180 17 180 3.76e-49 157
Msa0033880 AT1G02430.2 47.205 161 75 4 1 153 1 159 3.52e-45 147
Msa0033880 AT5G52210.1 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0033880 AT5G52210.2 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0033880 AT3G49870.1 34.091 176 113 2 1 173 1 176 2.28e-32 115
Msa0033880 AT5G67560.1 33.742 163 107 1 12 173 14 176 2.66e-31 112
Msa0033880 AT5G37680.1 33.523 176 114 2 1 173 1 176 2.09e-30 109
Msa0033880 AT3G49870.2 33.121 157 104 1 18 173 1 157 5.30e-29 105
Msa0033880 AT3G49860.1 32.530 166 111 1 16 180 10 175 2.17e-28 104
Msa0033880 AT1G02440.2 33.117 154 67 3 1 153 1 119 3.86e-26 97.1
Msa0033880 AT1G09180.1 32.961 179 104 2 13 177 16 192 2.98e-25 97.1
Msa0033880 AT3G62560.1 31.638 177 105 2 15 177 18 192 1.40e-24 95.1
Msa0033880 AT5G37680.2 32.812 128 86 0 46 173 2 129 4.49e-24 92.4
Msa0033880 AT1G56330.1 31.638 177 105 2 15 177 18 192 5.33e-24 93.6
Msa0033880 AT4G02080.1 31.073 177 106 2 15 177 18 192 5.86e-24 93.6

Find 65 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1_1:-61770677 None:intergenic
CATAGAGATTTATTAGTTAA+AGG 0.217116 1_1:+61771364 Msa0033880:exon
GATAAACACGTTACTCAATT+TGG 0.219430 1_1:+61769203 Msa0033880:five_prime_UTR
TTGTATTCCCATTGGGAATC+AGG 0.280658 1_1:-61769172 None:intergenic
AAGTATACGCATCTCTTTCT+TGG 0.288003 1_1:-61769779 None:intergenic
GGATTCAGAAAAGTTGAAAA+TGG 0.318550 1_1:+61769720 Msa0033880:intron
AATCATTTCTCTCTTCTTCA+AGG 0.351699 1_1:+61769331 Msa0033880:five_prime_UTR
TCAGCAGCATTCATAGCATT+TGG 0.364943 1_1:-61771025 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1_1:+61769999 Msa0033880:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1_1:+61769783 Msa0033880:CDS
GAATCGTAATGTGATTTGAT+TGG 0.395299 1_1:-61771690 None:intergenic
CAATTATGATCTCCAGCATC+TGG 0.404087 1_1:+61771411 Msa0033880:three_prime_UTR
GATTCAGAAAAGTTGAAAAT+GGG 0.407021 1_1:+61769721 Msa0033880:intron
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1_1:+61769835 Msa0033880:CDS
AATTGAGTAACGTGTTTATC+CGG 0.433601 1_1:-61769200 None:intergenic
CAATTAACTTCACAATCAAA+AGG 0.441411 1_1:-61771569 None:intergenic
GGTGTCTTTGTATTCCCATT+GGG 0.443811 1_1:-61769179 None:intergenic
CAGAGCACATGTGCCACATC+TGG 0.447819 1_1:+61771194 Msa0033880:CDS
CGGTGTCTTTGTATTCCCAT+TGG 0.447956 1_1:-61769180 None:intergenic
TTGGAGTTTCTCTCAACGTC+AGG 0.452967 1_1:-61769262 None:intergenic
CATTGGGAATCAGGTGTAAC+CGG 0.453162 1_1:-61769163 None:intergenic
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1_1:+61770015 Msa0033880:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1_1:+61771071 Msa0033880:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1_1:+61769749 Msa0033880:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1_1:+61770007 Msa0033880:CDS
CAGATGTGGCACATGTGCTC+TGG 0.476593 1_1:-61771193 None:intergenic
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1_1:-61769833 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1_1:-61769877 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1_1:+61771247 Msa0033880:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1_1:+61770736 Msa0033880:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1_1:-61769768 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1_1:+61770700 Msa0033880:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1_1:+61770000 Msa0033880:CDS
AATTAACTTCACAATCAAAA+GGG 0.535794 1_1:-61771568 None:intergenic
CAGGCAGGAAAACCAGATGC+TGG 0.540615 1_1:-61771423 None:intergenic
CGGTTACACCTGATTCCCAA+TGG 0.553465 1_1:+61769164 None:intergenic
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1_1:+61769802 Msa0033880:CDS
GGTTACACCTGATTCCCAAT+GGG 0.563432 1_1:+61769165 Msa0033880:five_prime_UTR
GACTTTATGAAGGACTTGAC+TGG 0.563819 1_1:+61771222 Msa0033880:CDS
ATAAAGTCCTTCACCAGATG+TGG 0.566017 1_1:-61771207 None:intergenic
AGAACTGCAGTCTATTATTG+TGG 0.567785 1_1:+61771488 Msa0033880:three_prime_UTR
CGAGCAATGAAAATCTATGC+AGG 0.568538 1_1:-61771442 None:intergenic
CAATGAAAATCTATGCAGGC+AGG 0.573708 1_1:-61771438 None:intergenic
TCTGGTGAAGGACTTTATGA+AGG 0.585343 1_1:+61771212 Msa0033880:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1_1:-61770653 None:intergenic
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1_1:+61770643 Msa0033880:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1_1:+61769865 Msa0033880:CDS
ATACATACCGATAGTAGGAA+TGG 0.605406 1_1:-61769872 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1_1:-61769830 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1_1:+61771043 Msa0033880:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1_1:+61770010 Msa0033880:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1_1:+61769787 Msa0033880:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1_1:-61771078 None:intergenic
ACATGTGCCACATCTGGTGA+AGG 0.638525 1_1:+61771200 Msa0033880:CDS
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1_1:+61770021 Msa0033880:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1_1:+61770669 Msa0033880:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1_1:+61770701 Msa0033880:CDS
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1_1:+61769970 Msa0033880:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1_1:-61770725 None:intergenic
CAATGGGAATACAAAGACAC+CGG 0.666066 1_1:+61769181 Msa0033880:five_prime_UTR
GTTGTTCTATAAATACGCGT+AGG 0.682859 1_1:+61769239 Msa0033880:five_prime_UTR
TGTATATGTAGGGTTCAATG+TGG 0.687704 1_1:+61769961 Msa0033880:intron
CTAATAGACAGACAAAGACG+AGG 0.693007 1_1:-61771603 None:intergenic
GCTGCACAGGATGTTGAATG+AGG 0.712176 1_1:+61770749 Msa0033880:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1_1:-61770657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAACTATCTTAAAA+AGG - chr1_1:61771718-61771737 None:intergenic 10.0%
!!! CATGATTTTGATTTCAATTT+TGG + chr1_1:61769539-61769558 Msa0033880:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1_1:61770189-61770208 None:intergenic 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1_1:61770288-61770307 Msa0033880:intron 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1_1:61770289-61770308 Msa0033880:intron 20.0%
!! TATGATGTACTATAATCTTT+CGG + chr1_1:61770521-61770540 Msa0033880:intron 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + chr1_1:61770799-61770818 Msa0033880:intron 20.0%
!! TCACTTATTCAACATATATT+TGG - chr1_1:61770836-61770855 None:intergenic 20.0%
!! CATAGAGATTTATTAGTTAA+AGG + chr1_1:61771364-61771383 Msa0033880:exon 20.0%
!! AATTAACTTCACAATCAAAA+GGG - chr1_1:61771571-61771590 None:intergenic 20.0%
! TAACAAAGAGAAAAAGAAGT+TGG - chr1_1:61769284-61769303 None:intergenic 25.0%
!! TTCTTTTTCTCTTTGTTACA+AGG + chr1_1:61769286-61769305 Msa0033880:five_prime_UTR 25.0%
! TATCATATGCATGTTATTAC+TGG + chr1_1:61769491-61769510 Msa0033880:intron 25.0%
! AATAACGTAATATATGCAGA+TGG - chr1_1:61769617-61769636 None:intergenic 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + chr1_1:61769661-61769680 Msa0033880:intron 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + chr1_1:61769721-61769740 Msa0033880:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1_1:61769891-61769910 Msa0033880:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1_1:61769933-61769952 Msa0033880:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1_1:61769950-61769969 Msa0033880:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1_1:61769951-61769970 Msa0033880:intron 25.0%
! ATTTCATTGATGCTATAACA+TGG + chr1_1:61770110-61770129 Msa0033880:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1_1:61770239-61770258 Msa0033880:intron 25.0%
! AAAAAAAAATCACTGCACAT+TGG - chr1_1:61770326-61770345 None:intergenic 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1_1:61770516-61770535 None:intergenic 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1_1:61770522-61770541 Msa0033880:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1_1:61770551-61770570 Msa0033880:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1_1:61770598-61770617 Msa0033880:intron 25.0%
! GTTGAATAAGTGAAAATGAA+AGG + chr1_1:61770843-61770862 Msa0033880:intron 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1_1:61770847-61770866 Msa0033880:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1_1:61770857-61770876 Msa0033880:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1_1:61770894-61770913 None:intergenic 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1_1:61770948-61770967 Msa0033880:intron 25.0%
! CAATTAACTTCACAATCAAA+AGG - chr1_1:61771572-61771591 None:intergenic 25.0%
AATTGAGTAACGTGTTTATC+CGG - chr1_1:61769203-61769222 None:intergenic 30.0%
GATAAACACGTTACTCAATT+TGG + chr1_1:61769203-61769222 Msa0033880:five_prime_UTR 30.0%
AATCATTTCTCTCTTCTTCA+AGG + chr1_1:61769331-61769350 Msa0033880:five_prime_UTR 30.0%
TGATGATAGTATTGTTTGTG+TGG + chr1_1:61769699-61769718 Msa0033880:intron 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + chr1_1:61769720-61769739 Msa0033880:intron 30.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1_1:61769836-61769855 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1_1:61769835-61769854 Msa0033880:CDS 30.0%
GATTTCTGTGATCATGATTA+TGG + chr1_1:61769917-61769936 Msa0033880:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1_1:61770048-61770067 Msa0033880:intron 30.0%
TGATGCTATAACATGGTAAT+TGG + chr1_1:61770117-61770136 Msa0033880:intron 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1_1:61770390-61770409 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1_1:61770669-61770688 Msa0033880:CDS 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1_1:61770680-61770699 None:intergenic 30.0%
GTTGAATGAGTGAAAATGAA+AGG + chr1_1:61770901-61770920 Msa0033880:intron 30.0%
AATGAGTGAAAATGAAAGGT+TGG + chr1_1:61770789-61770808 Msa0033880:intron 30.0%
! TGAAAGGTTGGTTATTTATG+TGG + chr1_1:61770859-61770878 Msa0033880:intron 30.0%
! GAAAGGTTGGTTATTTATGT+GGG + chr1_1:61770918-61770937 Msa0033880:intron 30.0%
! CAACTAATGCCTTTCTTTTT+GGG + chr1_1:61771324-61771343 Msa0033880:intron 30.0%
GAATCGTAATGTGATTTGAT+TGG - chr1_1:61771693-61771712 None:intergenic 30.0%
GTTGTTCTATAAATACGCGT+AGG + chr1_1:61769239-61769258 Msa0033880:five_prime_UTR 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - chr1_1:61769436-61769455 None:intergenic 35.0%
ATTCAATCATGCAATTCCAC+CGG + chr1_1:61769564-61769583 Msa0033880:intron 35.0%
AAGTATACGCATCTCTTTCT+TGG - chr1_1:61769782-61769801 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1_1:61769783-61769802 Msa0033880:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1_1:61769833-61769852 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1_1:61769865-61769884 Msa0033880:CDS 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1_1:61769875-61769894 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1_1:61769880-61769899 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1_1:61769961-61769980 Msa0033880:intron 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1_1:61770152-61770171 None:intergenic 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1_1:61770153-61770172 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1_1:61770259-61770278 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1_1:61770436-61770455 Msa0033880:intron 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1_1:61770444-61770463 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1_1:61770495-61770514 None:intergenic 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1_1:61770496-61770515 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1_1:61770508-61770527 None:intergenic 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1_1:61770683-61770702 Msa0033880:CDS 35.0%
GCTGAATGAGTGAAAATGAA+AGG + chr1_1:61770785-61770804 Msa0033880:intron 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1_1:61770930-61770949 Msa0033880:intron 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1_1:61770952-61770971 Msa0033880:intron 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1_1:61771247-61771266 Msa0033880:CDS 35.0%
!! CCAAAAAGAAAGGCATTAGT+TGG - chr1_1:61771326-61771345 None:intergenic 35.0%
! CCAACTAATGCCTTTCTTTT+TGG + chr1_1:61771323-61771342 Msa0033880:intron 35.0%
AGAACTGCAGTCTATTATTG+TGG + chr1_1:61771488-61771507 Msa0033880:three_prime_UTR 35.0%
TTGTATTCCCATTGGGAATC+AGG - chr1_1:61769175-61769194 None:intergenic 40.0%
GGTGTCTTTGTATTCCCATT+GGG - chr1_1:61769182-61769201 None:intergenic 40.0%
CAATGGGAATACAAAGACAC+CGG + chr1_1:61769181-61769200 Msa0033880:five_prime_UTR 40.0%
GATCTGGAAGAAAAGAGAAG+AGG - chr1_1:61769360-61769379 None:intergenic 40.0%
CCAGAAGAGATATACAGATC+TGG - chr1_1:61769376-61769395 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + chr1_1:61769373-61769392 Msa0033880:intron 40.0%
CGTAACATGATCTACGAATC+CGG - chr1_1:61769586-61769605 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1_1:61769771-61769790 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1_1:61769787-61769806 Msa0033880:CDS 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1_1:61770432-61770451 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1_1:61770486-61770505 None:intergenic 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1_1:61770487-61770506 None:intergenic 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1_1:61770488-61770507 None:intergenic 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1_1:61770700-61770719 Msa0033880:CDS 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1_1:61770701-61770720 Msa0033880:CDS 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1_1:61770728-61770747 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1_1:61771028-61771047 None:intergenic 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1_1:61771043-61771062 Msa0033880:CDS 40.0%
! GTAATGGAAGCAGGAAGATA+AGG - chr1_1:61771135-61771154 None:intergenic 40.0%
! TGAGAATGAGTAATGGAAGC+AGG - chr1_1:61771144-61771163 None:intergenic 40.0%
ATGACGGTGAGAATGAGTAA+TGG - chr1_1:61771151-61771170 None:intergenic 40.0%
ATTACTCATTCTCACCGTCA+TGG + chr1_1:61771150-61771169 Msa0033880:intron 40.0%
ATAAAGTCCTTCACCAGATG+TGG - chr1_1:61771210-61771229 None:intergenic 40.0%
TCTGGTGAAGGACTTTATGA+AGG + chr1_1:61771212-61771231 Msa0033880:CDS 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1_1:61771222-61771241 Msa0033880:CDS 40.0%
!! CTAATGCCTTTCTTTTTGGG+CGG + chr1_1:61771327-61771346 Msa0033880:intron 40.0%
AAATCACCGCCCAAAAAGAA+AGG - chr1_1:61771336-61771355 None:intergenic 40.0%
CAATTATGATCTCCAGCATC+TGG + chr1_1:61771411-61771430 Msa0033880:three_prime_UTR 40.0%
CAATGAAAATCTATGCAGGC+AGG - chr1_1:61771441-61771460 None:intergenic 40.0%
CGAGCAATGAAAATCTATGC+AGG - chr1_1:61771445-61771464 None:intergenic 40.0%
CTAATAGACAGACAAAGACG+AGG - chr1_1:61771606-61771625 None:intergenic 40.0%
GGTTACACCTGATTCCCAAT+GGG + chr1_1:61769165-61769184 Msa0033880:five_prime_UTR 45.0%
CGGTGTCTTTGTATTCCCAT+TGG - chr1_1:61769183-61769202 None:intergenic 45.0%
TTGGAGTTTCTCTCAACGTC+AGG - chr1_1:61769265-61769284 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - chr1_1:61769519-61769538 None:intergenic 45.0%
AACATGATCTACGAATCCGG+TGG - chr1_1:61769583-61769602 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1_1:61769749-61769768 Msa0033880:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1_1:61769970-61769989 Msa0033880:intron 45.0%
AGAACATCAGCTTCACTGTC+TGG + chr1_1:61769999-61770018 Msa0033880:CDS 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1_1:61770000-61770019 Msa0033880:CDS 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1_1:61770656-61770675 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1_1:61770660-61770679 None:intergenic 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1_1:61771081-61771100 None:intergenic 45.0%
TGGAAGCAGGAAGATAAGGA+AGG - chr1_1:61771131-61771150 None:intergenic 45.0%
CTGCATGTACAGATCCATGA+CGG - chr1_1:61771167-61771186 None:intergenic 45.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1_1:61770007-61770026 Msa0033880:CDS 50.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1_1:61770736-61770755 Msa0033880:CDS 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1_1:61770749-61770768 Msa0033880:CDS 50.0%
CGTCATGGATCTGTACATGC+AGG + chr1_1:61771165-61771184 Msa0033880:intron 50.0%
ACATGTGCCACATCTGGTGA+AGG + chr1_1:61771200-61771219 Msa0033880:CDS 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1_1:61769802-61769821 Msa0033880:CDS 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1_1:61770010-61770029 Msa0033880:CDS 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1_1:61770646-61770665 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1_1:61770647-61770666 None:intergenic 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1_1:61771196-61771215 None:intergenic 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1_1:61771194-61771213 Msa0033880:CDS 55.0%
!! TTTGGGCGGTGATTTGCTGC+AGG + chr1_1:61771341-61771360 Msa0033880:intron 55.0%
CAGGCAGGAAAACCAGATGC+TGG - chr1_1:61771426-61771445 None:intergenic 55.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1_1:61770015-61770034 Msa0033880:CDS 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1_1:61770021-61770040 Msa0033880:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1_1:61770643-61770662 Msa0033880:intron 60.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1_1:61771071-61771090 Msa0033880:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61769165 61771759 61769165 ID=Msa0033880;Name=Msa0033880
chr1_1 mRNA 61769165 61771759 61769165 ID=Msa0033880-mRNA-1;Parent=Msa0033880;Name=Msa0033880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=199|1|1|1|1|1|7|391|181
chr1_1 exon 61769165 61769352 61769165 ID=Msa0033880-mRNA-1:exon:19336;Parent=Msa0033880-mRNA-1
chr1_1 exon 61769728 61769886 61769728 ID=Msa0033880-mRNA-1:exon:19337;Parent=Msa0033880-mRNA-1
chr1_1 exon 61769972 61770042 61769972 ID=Msa0033880-mRNA-1:exon:19338;Parent=Msa0033880-mRNA-1
chr1_1 exon 61770651 61770770 61770651 ID=Msa0033880-mRNA-1:exon:19339;Parent=Msa0033880-mRNA-1
chr1_1 exon 61770974 61771092 61770974 ID=Msa0033880-mRNA-1:exon:19340;Parent=Msa0033880-mRNA-1
chr1_1 exon 61771187 61771268 61771187 ID=Msa0033880-mRNA-1:exon:19341;Parent=Msa0033880-mRNA-1
chr1_1 exon 61771363 61771759 61771363 ID=Msa0033880-mRNA-1:exon:19342;Parent=Msa0033880-mRNA-1
chr1_1 five_prime_UTR 61769165 61769352 61769165 ID=Msa0033880-mRNA-1:five_prime_utr;Parent=Msa0033880-mRNA-1
chr1_1 five_prime_UTR 61769728 61769738 61769728 ID=Msa0033880-mRNA-1:five_prime_utr;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61769739 61769886 61769739 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61769972 61770042 61769972 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61770651 61770770 61770651 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61770974 61771092 61770974 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61771187 61771268 61771187 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 CDS 61771363 61771368 61771363 ID=Msa0033880-mRNA-1:cds;Parent=Msa0033880-mRNA-1
chr1_1 three_prime_UTR 61771369 61771759 61771369 ID=Msa0033880-mRNA-1:three_prime_utr;Parent=Msa0033880-mRNA-1
Gene Sequence

>Msa0033880

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG

Protein sequence

>Msa0033880

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*