AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174000 MtrunA17_Chr1g0194261 100.000 181 0 0 1 181 1 181 1.94e-135 375
Msa0174000 MtrunA17_Chr5g0413451 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0174000 MtrunA17_Chr5g0413441 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0174000 MtrunA17_Chr7g0270301 98.895 181 2 0 1 181 1 181 1.72e-134 373
Msa0174000 MtrunA17_Chr6g0450081 98.895 181 2 0 1 181 1 181 2.15e-134 373
Msa0174000 MtrunA17_Chr5g0401761 86.667 180 24 0 1 180 1 180 3.16e-120 337
Msa0174000 MtrunA17_Chr4g0072861 63.277 177 65 0 1 177 1 177 4.55e-84 246
Msa0174000 MtrunA17_Chr5g0395631 61.582 177 68 0 1 177 1 177 5.74e-83 243
Msa0174000 MtrunA17_Chr4g0039591 60.452 177 70 0 1 177 1 177 1.18e-80 238
Msa0174000 MtrunA17_Chr5g0395641 55.495 182 79 1 1 180 1 182 1.10e-75 224
Msa0174000 MtrunA17_Chr1g0188111 51.934 181 87 0 1 181 1 181 1.16e-67 204
Msa0174000 MtrunA17_Chr8g0373271 48.485 165 82 3 18 180 17 180 7.80e-50 159
Msa0174000 MtrunA17_Chr2g0287721 34.831 178 105 2 5 173 5 180 3.73e-37 127
Msa0174000 MtrunA17_Chr5g0434561 34.659 176 112 2 1 173 1 176 3.10e-31 111
Msa0174000 MtrunA17_Chr5g0395651 63.291 79 27 1 1 77 1 79 7.78e-31 107
Msa0174000 MtrunA17_Chr5g0401071 32.065 184 122 2 1 181 1 184 3.01e-30 108
Msa0174000 MtrunA17_Chr4g0012371 31.847 157 106 1 18 173 1 157 4.38e-26 97.8
Msa0174000 MtrunA17_Chr2g0294701 31.638 177 105 2 15 177 18 192 8.39e-25 95.5
Msa0174000 MtrunA17_Chr7g0271761 31.073 177 106 2 15 177 18 192 2.12e-24 94.4
Msa0174000 MtrunA17_Chr4g0068171 31.638 177 105 2 15 177 18 192 7.00e-23 90.5
Msa0174000 MtrunA17_Chr5g0395671 51.020 49 24 0 132 180 44 92 9.27e-13 61.2
Msa0174000 MtrunA17_Chr1g0180291 34.118 85 52 1 18 98 15 99 1.89e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174000 AT1G10630.1 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0174000 AT1G10630.2 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0174000 AT5G14670.2 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0174000 AT5G14670.3 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0174000 AT3G62290.3 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0174000 AT3G62290.1 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0174000 AT3G62290.2 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0174000 AT1G23490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.2 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.7 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.4 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.3 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.6 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT1G70490.5 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0174000 AT2G47170.2 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0174000 AT2G47170.1 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0174000 AT2G47170.3 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0174000 AT5G14670.1 98.343 181 3 0 1 181 1 181 6.10e-133 370
Msa0174000 AT2G15310.1 67.403 181 59 0 1 181 1 181 3.14e-91 265
Msa0174000 AT2G24765.1 62.147 177 67 0 1 177 1 177 2.10e-84 247
Msa0174000 AT5G17060.2 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0174000 AT5G17060.1 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0174000 AT3G03120.1 59.887 177 71 0 1 177 1 177 1.26e-80 238
Msa0174000 AT3G22950.1 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0174000 AT3G22950.2 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0174000 AT2G24765.2 64.844 128 45 0 1 128 1 128 1.76e-60 184
Msa0174000 AT3G03120.2 62.308 130 49 0 1 130 1 130 1.35e-59 182
Msa0174000 AT1G02430.1 48.936 188 82 5 1 176 1 186 6.81e-57 177
Msa0174000 AT1G02440.1 45.699 186 91 4 1 176 1 186 2.57e-55 173
Msa0174000 AT2G18390.1 48.485 165 82 3 18 180 17 180 3.76e-49 157
Msa0174000 AT1G02430.2 47.205 161 75 4 1 153 1 159 3.52e-45 147
Msa0174000 AT5G52210.1 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0174000 AT5G52210.2 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0174000 AT3G49870.1 34.091 176 113 2 1 173 1 176 2.28e-32 115
Msa0174000 AT5G67560.1 33.742 163 107 1 12 173 14 176 2.66e-31 112
Msa0174000 AT5G37680.1 33.523 176 114 2 1 173 1 176 2.09e-30 109
Msa0174000 AT3G49870.2 33.121 157 104 1 18 173 1 157 5.30e-29 105
Msa0174000 AT3G49860.1 32.530 166 111 1 16 180 10 175 2.17e-28 104
Msa0174000 AT1G02440.2 33.117 154 67 3 1 153 1 119 3.86e-26 97.1
Msa0174000 AT1G09180.1 32.961 179 104 2 13 177 16 192 2.98e-25 97.1
Msa0174000 AT3G62560.1 31.638 177 105 2 15 177 18 192 1.40e-24 95.1
Msa0174000 AT5G37680.2 32.812 128 86 0 46 173 2 129 4.49e-24 92.4
Msa0174000 AT1G56330.1 31.638 177 105 2 15 177 18 192 5.33e-24 93.6
Msa0174000 AT4G02080.1 31.073 177 106 2 15 177 18 192 5.86e-24 93.6

Find 65 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1_4:-59508838 None:intergenic
CATAGAGATTTATTAGTTAA+AGG 0.217116 1_4:+59509525 Msa0174000:exon
GATAAACACGTTACTCAATT+TGG 0.219430 1_4:+59507338 Msa0174000:five_prime_UTR
TTGTATTCCCATTGGGAATC+AGG 0.280658 1_4:-59507307 None:intergenic
AAGTATACGCATCTCTTTCT+TGG 0.288003 1_4:-59507917 None:intergenic
GGATTCAGAAAAGTTGAAAA+TGG 0.318550 1_4:+59507858 Msa0174000:intron
AATCATTTCTCTCTTCTTCA+AGG 0.351699 1_4:+59507466 Msa0174000:five_prime_UTR
TCAGCAGCATTCATAGCATT+TGG 0.364943 1_4:-59509186 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1_4:+59508137 Msa0174000:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1_4:+59507921 Msa0174000:CDS
GAATCGTAATGTGATTTGAT+TGG 0.395299 1_4:-59509852 None:intergenic
CAATTATGATCTCCAGCATC+TGG 0.404087 1_4:+59509571 Msa0174000:three_prime_UTR
GATTCAGAAAAGTTGAAAAT+GGG 0.407021 1_4:+59507859 Msa0174000:intron
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1_4:+59507973 Msa0174000:CDS
AATTGAGTAACGTGTTTATC+CGG 0.433601 1_4:-59507335 None:intergenic
CAATTAACTTCACAATCAAA+AGG 0.441411 1_4:-59509731 None:intergenic
GGTGTCTTTGTATTCCCATT+GGG 0.443811 1_4:-59507314 None:intergenic
CATTGGGAATCAGGTGTAAC+CGG 0.447072 1_4:-59507298 None:intergenic
CAGAGCACATGTGCCACATC+TGG 0.447819 1_4:+59509355 Msa0174000:CDS
CGGTGTCTTTGTATTCCCAT+TGG 0.447956 1_4:-59507315 None:intergenic
TTGGAGTTTCTCTCAACGTC+AGG 0.452967 1_4:-59507397 None:intergenic
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1_4:+59508153 Msa0174000:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1_4:+59509232 Msa0174000:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1_4:+59507887 Msa0174000:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1_4:+59508145 Msa0174000:CDS
CAGATGTGGCACATGTGCTC+TGG 0.476593 1_4:-59509354 None:intergenic
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1_4:-59507971 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1_4:-59508015 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1_4:+59509408 Msa0174000:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1_4:+59508897 Msa0174000:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1_4:-59507906 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1_4:+59508861 Msa0174000:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1_4:+59508138 Msa0174000:CDS
AATTAACTTCACAATCAAAA+GGG 0.535794 1_4:-59509730 None:intergenic
CAGGCAGGAAAACCAGATGC+TGG 0.540615 1_4:-59509583 None:intergenic
AGAACTGCAGTCTATTATTG+AGG 0.554874 1_4:+59509648 Msa0174000:three_prime_UTR
CGGTTACACCTGATTCCCAA+TGG 0.561798 1_4:+59507299 None:intergenic
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1_4:+59507940 Msa0174000:CDS
GGTTACACCTGATTCCCAAT+GGG 0.563432 1_4:+59507300 Msa0174000:five_prime_UTR
GACTTTATGAAGGACTTGAC+TGG 0.563819 1_4:+59509383 Msa0174000:CDS
ATAAAGTCCTTCACCAGATG+TGG 0.566017 1_4:-59509368 None:intergenic
CGAGCAATGAAAATCTATGC+AGG 0.568538 1_4:-59509602 None:intergenic
CAATGAAAATCTATGCAGGC+AGG 0.573708 1_4:-59509598 None:intergenic
TCTGGTGAAGGACTTTATGA+AGG 0.585343 1_4:+59509373 Msa0174000:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1_4:-59508814 None:intergenic
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1_4:+59508804 Msa0174000:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1_4:+59508003 Msa0174000:CDS
ATACATACCGATAGTAGGAA+TGG 0.605406 1_4:-59508010 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1_4:-59507968 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1_4:+59509204 Msa0174000:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1_4:+59508148 Msa0174000:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1_4:+59507925 Msa0174000:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1_4:-59509239 None:intergenic
ACATGTGCCACATCTGGTGA+AGG 0.638525 1_4:+59509361 Msa0174000:CDS
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1_4:+59508159 Msa0174000:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1_4:+59508830 Msa0174000:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1_4:+59508862 Msa0174000:CDS
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1_4:+59508108 Msa0174000:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1_4:-59508886 None:intergenic
CAATGGGAATACAAAGACAC+CGG 0.666066 1_4:+59507316 Msa0174000:five_prime_UTR
GTTGTTCTATAAATACGCGT+AGG 0.682859 1_4:+59507374 Msa0174000:five_prime_UTR
TGTATATGTAGGGTTCAATG+TGG 0.687704 1_4:+59508099 Msa0174000:intron
CTAATAGACAGACAAAGACG+AGG 0.693007 1_4:-59509765 None:intergenic
GCTGCACAGGATGTTGAATG+AGG 0.712176 1_4:+59508910 Msa0174000:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1_4:-59508818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAACTATCTTAAAA+AGG - chr1_4:59509880-59509899 None:intergenic 10.0%
!! AATGAAAGTTTGATTATTTA+TGG + chr1_4:59508960-59508979 Msa0174000:intron 15.0%
!!! CATGATTTTGATTTCAATTT+TGG + chr1_4:59507674-59507693 Msa0174000:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1_4:59508327-59508346 None:intergenic 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1_4:59508443-59508462 Msa0174000:intron 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1_4:59508444-59508463 Msa0174000:intron 20.0%
!! AAAAAAAAAATACTGCACAT+TGG - chr1_4:59508481-59508500 None:intergenic 20.0%
!! TATGATGTACTATAATCTTT+CGG + chr1_4:59508682-59508701 Msa0174000:intron 20.0%
!! TCACTTATTCAACATATATT+TGG - chr1_4:59508997-59509016 None:intergenic 20.0%
!! CATAGAGATTTATTAGTTAA+AGG + chr1_4:59509525-59509544 Msa0174000:exon 20.0%
!! AATTAACTTCACAATCAAAA+GGG - chr1_4:59509733-59509752 None:intergenic 20.0%
! TAACAAAGAGAAAAAGAAGT+TGG - chr1_4:59507419-59507438 None:intergenic 25.0%
!! TTCTTTTTCTCTTTGTTACA+AGG + chr1_4:59507421-59507440 Msa0174000:five_prime_UTR 25.0%
! TATCATATGCATGTTATTAC+TGG + chr1_4:59507626-59507645 Msa0174000:intron 25.0%
! AATAACGTAATATATGCAGA+TGG - chr1_4:59507752-59507771 None:intergenic 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + chr1_4:59507799-59507818 Msa0174000:intron 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + chr1_4:59507859-59507878 Msa0174000:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1_4:59508029-59508048 Msa0174000:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1_4:59508071-59508090 Msa0174000:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1_4:59508088-59508107 Msa0174000:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1_4:59508089-59508108 Msa0174000:intron 25.0%
! ATTTCATTGATGCTATATCA+TGG + chr1_4:59508248-59508267 Msa0174000:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1_4:59508394-59508413 Msa0174000:intron 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1_4:59508677-59508696 None:intergenic 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1_4:59508683-59508702 Msa0174000:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1_4:59508712-59508731 Msa0174000:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1_4:59508759-59508778 Msa0174000:intron 25.0%
! GTTGAATAAGTGAAAATGAA+AGG + chr1_4:59509004-59509023 Msa0174000:intron 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1_4:59509008-59509027 Msa0174000:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1_4:59509018-59509037 Msa0174000:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1_4:59509055-59509074 None:intergenic 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1_4:59509109-59509128 Msa0174000:intron 25.0%
!!! AACTAATGCCTTTCTTTTTT+GGG + chr1_4:59509485-59509504 Msa0174000:intron 25.0%
! CAATTAACTTCACAATCAAA+AGG - chr1_4:59509734-59509753 None:intergenic 25.0%
AATTGAGTAACGTGTTTATC+CGG - chr1_4:59507338-59507357 None:intergenic 30.0%
GATAAACACGTTACTCAATT+TGG + chr1_4:59507338-59507357 Msa0174000:five_prime_UTR 30.0%
AATCATTTCTCTCTTCTTCA+AGG + chr1_4:59507466-59507485 Msa0174000:five_prime_UTR 30.0%
TGATGATAGTATTGTTTGTG+TGG + chr1_4:59507837-59507856 Msa0174000:intron 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + chr1_4:59507858-59507877 Msa0174000:intron 30.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1_4:59507974-59507993 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1_4:59507973-59507992 Msa0174000:CDS 30.0%
CATAATCATGATCACAGAAA+TGG - chr1_4:59508057-59508076 None:intergenic 30.0%
CATTTCTGTGATCATGATTA+TGG + chr1_4:59508055-59508074 Msa0174000:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1_4:59508186-59508205 Msa0174000:intron 30.0%
TGATGCTATATCATGGTAAT+TGG + chr1_4:59508255-59508274 Msa0174000:intron 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1_4:59508551-59508570 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1_4:59508830-59508849 Msa0174000:CDS 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1_4:59508841-59508860 None:intergenic 30.0%
GTTGAATGAGTGAAAATGAA+AGG + chr1_4:59509062-59509081 Msa0174000:intron 30.0%
AATGAGTGAAAATGAAAGGT+TGG + chr1_4:59509066-59509085 Msa0174000:intron 30.0%
! TGAAAGGTTGGTTATTTATG+TGG + chr1_4:59509020-59509039 Msa0174000:intron 30.0%
! GAAAGGTTGGTTATTTATGT+GGG + chr1_4:59509079-59509098 Msa0174000:intron 30.0%
! GAATAACTTTTCTGCTAACT+TGG + chr1_4:59509439-59509458 Msa0174000:intron 30.0%
!! CAAAAAAGAAAGGCATTAGT+TGG - chr1_4:59509486-59509505 None:intergenic 30.0%
!!! CAACTAATGCCTTTCTTTTT+TGG + chr1_4:59509484-59509503 Msa0174000:intron 30.0%
GAATCGTAATGTGATTTGAT+TGG - chr1_4:59509855-59509874 None:intergenic 30.0%
GTTGTTCTATAAATACGCGT+AGG + chr1_4:59507374-59507393 Msa0174000:five_prime_UTR 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - chr1_4:59507571-59507590 None:intergenic 35.0%
TCGTAACATGATCTACGAAT+CGG - chr1_4:59507722-59507741 None:intergenic 35.0%
AAGTATACGCATCTCTTTCT+TGG - chr1_4:59507920-59507939 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1_4:59507921-59507940 Msa0174000:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1_4:59507971-59507990 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1_4:59508003-59508022 Msa0174000:CDS 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1_4:59508013-59508032 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1_4:59508018-59508037 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1_4:59508099-59508118 Msa0174000:intron 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1_4:59508290-59508309 None:intergenic 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1_4:59508291-59508310 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1_4:59508414-59508433 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1_4:59508597-59508616 Msa0174000:intron 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1_4:59508605-59508624 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1_4:59508656-59508675 None:intergenic 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1_4:59508657-59508676 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1_4:59508669-59508688 None:intergenic 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1_4:59508844-59508863 Msa0174000:CDS 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1_4:59509091-59509110 Msa0174000:intron 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1_4:59509113-59509132 Msa0174000:intron 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1_4:59509408-59509427 Msa0174000:CDS 35.0%
!!! TAATGCCTTTCTTTTTTGGG+CGG + chr1_4:59509488-59509507 Msa0174000:intron 35.0%
AGAACTGCAGTCTATTATTG+AGG + chr1_4:59509648-59509667 Msa0174000:three_prime_UTR 35.0%
TTGTATTCCCATTGGGAATC+AGG - chr1_4:59507310-59507329 None:intergenic 40.0%
GGTGTCTTTGTATTCCCATT+GGG - chr1_4:59507317-59507336 None:intergenic 40.0%
CAATGGGAATACAAAGACAC+CGG + chr1_4:59507316-59507335 Msa0174000:five_prime_UTR 40.0%
GATCTGGAAGAAAAGAGAAG+AGG - chr1_4:59507495-59507514 None:intergenic 40.0%
CCAGAAGAGATATACAGATC+TGG - chr1_4:59507511-59507530 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + chr1_4:59507508-59507527 Msa0174000:intron 40.0%
CGTAACATGATCTACGAATC+GGG - chr1_4:59507721-59507740 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1_4:59507909-59507928 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1_4:59507925-59507944 Msa0174000:CDS 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1_4:59508593-59508612 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1_4:59508647-59508666 None:intergenic 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1_4:59508648-59508667 None:intergenic 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1_4:59508649-59508668 None:intergenic 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1_4:59508861-59508880 Msa0174000:CDS 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1_4:59508862-59508881 Msa0174000:CDS 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1_4:59508889-59508908 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1_4:59509189-59509208 None:intergenic 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1_4:59509204-59509223 Msa0174000:CDS 40.0%
! GTAATGGAAGCAGGAAGATA+AGG - chr1_4:59509296-59509315 None:intergenic 40.0%
! TGAGAATGAGTAATGGAAGC+AGG - chr1_4:59509305-59509324 None:intergenic 40.0%
ATGACGGTGAGAATGAGTAA+TGG - chr1_4:59509312-59509331 None:intergenic 40.0%
ATTACTCATTCTCACCGTCA+TGG + chr1_4:59509311-59509330 Msa0174000:intron 40.0%
ATAAAGTCCTTCACCAGATG+TGG - chr1_4:59509371-59509390 None:intergenic 40.0%
TCTGGTGAAGGACTTTATGA+AGG + chr1_4:59509373-59509392 Msa0174000:CDS 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1_4:59509383-59509402 Msa0174000:CDS 40.0%
AATCACCGCCCAAAAAAGAA+AGG - chr1_4:59509496-59509515 None:intergenic 40.0%
CAATTATGATCTCCAGCATC+TGG + chr1_4:59509571-59509590 Msa0174000:three_prime_UTR 40.0%
CAATGAAAATCTATGCAGGC+AGG - chr1_4:59509601-59509620 None:intergenic 40.0%
CGAGCAATGAAAATCTATGC+AGG - chr1_4:59509605-59509624 None:intergenic 40.0%
CTAATAGACAGACAAAGACG+AGG - chr1_4:59509768-59509787 None:intergenic 40.0%
GGTTACACCTGATTCCCAAT+GGG + chr1_4:59507300-59507319 Msa0174000:five_prime_UTR 45.0%
CGGTGTCTTTGTATTCCCAT+TGG - chr1_4:59507318-59507337 None:intergenic 45.0%
TTGGAGTTTCTCTCAACGTC+AGG - chr1_4:59507400-59507419 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - chr1_4:59507654-59507673 None:intergenic 45.0%
AACATGATCTACGAATCGGG+TGG - chr1_4:59507718-59507737 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1_4:59507887-59507906 Msa0174000:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1_4:59508108-59508127 Msa0174000:intron 45.0%
AGAACATCAGCTTCACTGTC+TGG + chr1_4:59508137-59508156 Msa0174000:CDS 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1_4:59508138-59508157 Msa0174000:CDS 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1_4:59508817-59508836 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1_4:59508821-59508840 None:intergenic 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1_4:59509242-59509261 None:intergenic 45.0%
TGGAAGCAGGAAGATAAGGA+AGG - chr1_4:59509292-59509311 None:intergenic 45.0%
CTGCATGTACAGATCCATGA+CGG - chr1_4:59509328-59509347 None:intergenic 45.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1_4:59508145-59508164 Msa0174000:CDS 50.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1_4:59508897-59508916 Msa0174000:CDS 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1_4:59508910-59508929 Msa0174000:CDS 50.0%
CGTCATGGATCTGTACATGC+AGG + chr1_4:59509326-59509345 Msa0174000:intron 50.0%
ACATGTGCCACATCTGGTGA+AGG + chr1_4:59509361-59509380 Msa0174000:CDS 50.0%
!! TTTGGGCGGTGATTTGCTTC+AGG + chr1_4:59509502-59509521 Msa0174000:intron 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1_4:59507940-59507959 Msa0174000:CDS 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1_4:59508148-59508167 Msa0174000:CDS 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1_4:59508807-59508826 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1_4:59508808-59508827 None:intergenic 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1_4:59509357-59509376 None:intergenic 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1_4:59509355-59509374 Msa0174000:CDS 55.0%
CAGGCAGGAAAACCAGATGC+TGG - chr1_4:59509586-59509605 None:intergenic 55.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1_4:59508153-59508172 Msa0174000:CDS 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1_4:59508159-59508178 Msa0174000:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1_4:59508804-59508823 Msa0174000:intron 60.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1_4:59509232-59509251 Msa0174000:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59507300 59509921 59507300 ID=Msa0174000;Name=Msa0174000
chr1_4 mRNA 59507300 59509921 59507300 ID=Msa0174000-mRNA-1;Parent=Msa0174000;Name=Msa0174000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=199|1|1|1|0.66|0.42|7|392|181
chr1_4 exon 59507300 59507487 59507300 ID=Msa0174000-mRNA-1:exon:18656;Parent=Msa0174000-mRNA-1
chr1_4 exon 59507866 59508024 59507866 ID=Msa0174000-mRNA-1:exon:18657;Parent=Msa0174000-mRNA-1
chr1_4 exon 59508110 59508180 59508110 ID=Msa0174000-mRNA-1:exon:18658;Parent=Msa0174000-mRNA-1
chr1_4 exon 59508812 59508931 59508812 ID=Msa0174000-mRNA-1:exon:18659;Parent=Msa0174000-mRNA-1
chr1_4 exon 59509135 59509253 59509135 ID=Msa0174000-mRNA-1:exon:18660;Parent=Msa0174000-mRNA-1
chr1_4 exon 59509348 59509429 59509348 ID=Msa0174000-mRNA-1:exon:18661;Parent=Msa0174000-mRNA-1
chr1_4 exon 59509524 59509921 59509524 ID=Msa0174000-mRNA-1:exon:18662;Parent=Msa0174000-mRNA-1
chr1_4 five_prime_UTR 59507300 59507487 59507300 ID=Msa0174000-mRNA-1:five_prime_utr;Parent=Msa0174000-mRNA-1
chr1_4 five_prime_UTR 59507866 59507876 59507866 ID=Msa0174000-mRNA-1:five_prime_utr;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59507877 59508024 59507877 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59508110 59508180 59508110 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59508812 59508931 59508812 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59509135 59509253 59509135 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59509348 59509429 59509348 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 CDS 59509524 59509529 59509524 ID=Msa0174000-mRNA-1:cds;Parent=Msa0174000-mRNA-1
chr1_4 three_prime_UTR 59509530 59509921 59509530 ID=Msa0174000-mRNA-1:three_prime_utr;Parent=Msa0174000-mRNA-1
Gene Sequence

>Msa0174000

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG

Protein sequence

>Msa0174000

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*