AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1098890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098890 MtrunA17_Chr5g0442811 100.000 203 0 0 1 203 1 203 9.05e-152 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1098890 AT2G30880.2 85.644 202 29 0 2 203 6 207 4.56e-131 373
Msa1098890 AT2G30880.1 85.644 202 29 0 2 203 6 207 5.66e-129 372

Find 51 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATGGTTCTACAAAATT+AGG 0.266451 7_3:+26900705 Msa1098890:CDS
GGACCCAACAACTGGGAAAA+TGG 0.267982 7_3:+26899167 Msa1098890:CDS
CGTCAGCTAGCTTCTGCTTC+TGG 0.300599 7_3:+26897970 Msa1098890:CDS
AGTTGTTGATCTACGCCTTA+TGG 0.312222 7_3:+26897813 Msa1098890:exon
GGACCATCAGTAGTCCTATT+TGG 0.315687 7_3:-26900834 None:intergenic
TTCTGGTAGAAATCTGTTGC+AGG 0.325130 7_3:+26897987 Msa1098890:CDS
CTCTTGGAATGATGCCAAAT+AGG 0.350376 7_3:+26900820 Msa1098890:CDS
TGTAGAACCATTCCCACTTA+AGG 0.357415 7_3:-26900697 None:intergenic
GTGATCTTGGACCCAACAAC+TGG 0.369582 7_3:+26899159 Msa1098890:CDS
TTTGGTGACAGCTGAGGAAA+TGG 0.377415 7_3:+26899124 Msa1098890:intron
AACTTCCTCATTTAGATATC+GGG 0.385027 7_3:+26899650 Msa1098890:intron
TGAAAACACAGAGAATAGTT+TGG 0.385837 7_3:+26897936 Msa1098890:CDS
ATTTCTTTGCGAAATGCTCT+TGG 0.394738 7_3:+26900804 Msa1098890:CDS
GAACGAACGTTGGGTGATCT+TGG 0.411577 7_3:+26899146 Msa1098890:CDS
CTCCTGGTGCAGCTCGAGCA+TGG 0.438189 7_3:+26899710 Msa1098890:CDS
TCCTGGTGCAGCTCGAGCAT+GGG 0.444038 7_3:+26899711 Msa1098890:CDS
AAAGTTTCAAACCCAACAAA+AGG 0.446581 7_3:-26897775 None:intergenic
TTCCTATGCGCGGAGACTCC+TGG 0.453816 7_3:+26899694 Msa1098890:CDS
CGTAGATCAACAACTCTTGT+CGG 0.491289 7_3:-26897805 None:intergenic
GAGGAAATGGAACGAACGTT+GGG 0.494683 7_3:+26899137 Msa1098890:CDS
GGAAAAGTTAATTACAGTCT+CGG 0.501614 7_3:-26898028 None:intergenic
TAGGACTACTGATGGTCCTA+TGG 0.502862 7_3:+26900839 Msa1098890:CDS
CATGCTTACTTGAAATTCAC+AGG 0.510486 7_3:-26899374 None:intergenic
TCTACGCCTTATGGCTTCTC+CGG 0.514201 7_3:+26897822 Msa1098890:exon
ACCCATGCTCGAGCTGCACC+AGG 0.524783 7_3:-26899712 None:intergenic
AGAATACCGGAGAAGCCATA+AGG 0.527526 7_3:-26897828 None:intergenic
GTGAATTCCTTAAGTGGGAA+TGG 0.529448 7_3:+26900690 Msa1098890:CDS
AGAATTGTTCCCTTGACAGT+TGG 0.531526 7_3:-26899320 None:intergenic
GAAGCTGTGAATTCCTTAAG+TGG 0.533425 7_3:+26900684 Msa1098890:CDS
TATCGGGACACCACAGAAGA+AGG 0.538158 7_3:+26899666 Msa1098890:CDS
AAGAAATGAGCCAACTGTCA+AGG 0.539148 7_3:+26899310 Msa1098890:CDS
ACATTCCGAGGCTGTTGAGT+TGG 0.543936 7_3:-26900754 None:intergenic
ATGATTGTTAAATCATCCAT+AGG 0.546789 7_3:-26900855 None:intergenic
AGTGGGCTACCGAAGTATGA+TGG 0.552759 7_3:+26899516 Msa1098890:intron
GTCTCGGATCTCTTAAGAAG+TGG 0.556862 7_3:-26898012 None:intergenic
TGCAGCCAACTCAACAGCCT+CGG 0.564100 7_3:+26900749 Msa1098890:CDS
AGAAATGAGCCAACTGTCAA+GGG 0.571886 7_3:+26899311 Msa1098890:CDS
CACCAGGAGTCTCCGCGCAT+AGG 0.573977 7_3:-26899696 None:intergenic
GGATGATTTAACAATCATGA+AGG 0.585369 7_3:+26900860 Msa1098890:CDS
TGAGGAAATGGAACGAACGT+TGG 0.588772 7_3:+26899136 Msa1098890:CDS
TCTGGTAGAAATCTGTTGCA+GGG 0.589058 7_3:+26897988 Msa1098890:CDS
ATGCCAAATAGGACTACTGA+TGG 0.592713 7_3:+26900831 Msa1098890:CDS
AAGCTGTGAATTCCTTAAGT+GGG 0.598255 7_3:+26900685 Msa1098890:CDS
AGGAAATAATCCTTCTTCTG+TGG 0.603393 7_3:-26899676 None:intergenic
AATTTCTTTAGAACATTCCG+AGG 0.603804 7_3:-26900766 None:intergenic
TCACACCAGTGCCACTCAGT+TGG 0.610667 7_3:+26900644 Msa1098890:intron
TGATCTTGGACCCAACAACT+GGG 0.611893 7_3:+26899160 Msa1098890:CDS
GAAGGATTATTTCCTATGCG+CGG 0.615384 7_3:+26899684 Msa1098890:CDS
ATGCAGCATCCATCATACTT+CGG 0.643638 7_3:-26899525 None:intergenic
ATTCACAGGAGATACAGTAA+TGG 0.674475 7_3:-26899360 None:intergenic
ATGTTCTAAAGAAATTGAAG+CGG 0.687851 7_3:+26900773 Msa1098890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTATAATTTT+CGG + chr7_3:26899568-26899587 Msa1098890:intron 0.0%
!!! ATAAAATACTAATCAATTTT+GGG - chr7_3:26898257-26898276 None:intergenic 10.0%
!! TAATTGTTGAAAATTTAAAA+AGG + chr7_3:26898767-26898786 Msa1098890:intron 10.0%
!!! TGAAAAATTTGTTATTTTTT+TGG + chr7_3:26899106-26899125 Msa1098890:intron 10.0%
!!! TATACTAATTTGATTTATTT+CGG + chr7_3:26899485-26899504 Msa1098890:intron 10.0%
!! AATATAAAAATGACAAAAAA+AGG - chr7_3:26899557-26899576 None:intergenic 10.0%
!!! CAATATATTTTGAAATTAAA+TGG + chr7_3:26899803-26899822 Msa1098890:intron 10.0%
!!! AATTTATAAGATATTTTTAG+CGG + chr7_3:26899853-26899872 Msa1098890:intron 10.0%
!!! TTTTGTTATATTTTAGTTTT+TGG - chr7_3:26900036-26900055 None:intergenic 10.0%
!!! TTCAATTTTTATTGTGTTAA+TGG + chr7_3:26898136-26898155 Msa1098890:intron 15.0%
!!! GATAAAATACTAATCAATTT+TGG - chr7_3:26898258-26898277 None:intergenic 15.0%
!! AAAATTTAAAAAGGATTGAA+GGG + chr7_3:26898776-26898795 Msa1098890:intron 15.0%
!!! TCATGTTTTCAAATTATTAT+CGG + chr7_3:26898947-26898966 Msa1098890:intron 15.0%
!!! ATATATTATTTTTGTGTGAA+GGG + chr7_3:26899222-26899241 Msa1098890:intron 15.0%
!!! GTTATTTTTCTTTGATTTTT+AGG + chr7_3:26899282-26899301 Msa1098890:intron 15.0%
!!! ATTTATAAGATATTTTTAGC+GGG + chr7_3:26899854-26899873 Msa1098890:intron 15.0%
!! AAAAAAACAAACTGAAAAAT+TGG - chr7_3:26900228-26900247 None:intergenic 15.0%
!! ATAGAATAAATAACAATAAG+AGG - chr7_3:26900501-26900520 None:intergenic 15.0%
!!! ATAAACAAAAACCTTTTGTT+GGG + chr7_3:26897764-26897783 Msa1098890:five_prime_UTR 20.0%
!! TCAGTTAATCAAATAAAAAG+AGG - chr7_3:26898052-26898071 None:intergenic 20.0%
!! TTGAAGATTAATATGAAAAG+GGG - chr7_3:26898114-26898133 None:intergenic 20.0%
!! CTTGAAGATTAATATGAAAA+GGG - chr7_3:26898115-26898134 None:intergenic 20.0%
!! ACTTGAAGATTAATATGAAA+AGG - chr7_3:26898116-26898135 None:intergenic 20.0%
!!! TAAACTTTTACAATTCATCT+TGG - chr7_3:26898678-26898697 None:intergenic 20.0%
!! GAAAATTTAAAAAGGATTGA+AGG + chr7_3:26898775-26898794 Msa1098890:intron 20.0%
!!! CATATATTATTTTTGTGTGA+AGG + chr7_3:26899221-26899240 Msa1098890:intron 20.0%
!! CCAATATGAAATTAAAAACA+AGG - chr7_3:26899779-26899798 None:intergenic 20.0%
!!! CCTTGTTTTTAATTTCATAT+TGG + chr7_3:26899776-26899795 Msa1098890:intron 20.0%
!!! GTTATATTTTAGTTTTTGGA+AGG - chr7_3:26900032-26900051 None:intergenic 20.0%
!!! ACATTCCATAATTTTAAACA+GGG - chr7_3:26900354-26900373 None:intergenic 20.0%
!!! AACATTCCATAATTTTAAAC+AGG - chr7_3:26900355-26900374 None:intergenic 20.0%
!!! TTCCTTCAATAATTTTCTAA+GGG + chr7_3:26900390-26900409 Msa1098890:intron 20.0%
!!! TTTTTTATACTCACGTTAAT+AGG + chr7_3:26900427-26900446 Msa1098890:intron 20.0%
!!! TACAAATTGATCCATTTTAA+TGG - chr7_3:26900548-26900567 None:intergenic 20.0%
!!! CAACAAAAGGTTTTTGTTTA+TGG - chr7_3:26897765-26897784 None:intergenic 25.0%
!! CATAAACAAAAACCTTTTGT+TGG + chr7_3:26897763-26897782 Msa1098890:five_prime_UTR 25.0%
! GTTAATTTATGTGTGACAAA+GGG - chr7_3:26898296-26898315 None:intergenic 25.0%
! TGTTAATTTATGTGTGACAA+AGG - chr7_3:26898297-26898316 None:intergenic 25.0%
! ATTTCAATAACCTTGAATTC+AGG + chr7_3:26898434-26898453 Msa1098890:intron 25.0%
!!! ATCTTGGTTTTACCTAAATT+TGG - chr7_3:26898662-26898681 None:intergenic 25.0%
!! TTTTCAAATTATTATCGGTG+TGG + chr7_3:26898952-26898971 Msa1098890:intron 25.0%
! AAACAAGATTGGATATTCAA+AGG - chr7_3:26899023-26899042 None:intergenic 25.0%
! TAAGAAAGTCAAAACAAGAT+TGG - chr7_3:26899034-26899053 None:intergenic 25.0%
!! ACAAATTTTTCACATAAGCT+AGG - chr7_3:26899098-26899117 None:intergenic 25.0%
!! TAACATAACCCTATTTTACT+TGG + chr7_3:26899409-26899428 Msa1098890:intron 25.0%
! TAACTTCCTCATTTAGATAT+CGG + chr7_3:26899649-26899668 Msa1098890:intron 25.0%
!! TTTCTACTCTTTTTCCTTTT+AGG - chr7_3:26899917-26899936 None:intergenic 25.0%
! AAACAAACTGAAAAATTGGA+CGG - chr7_3:26900224-26900243 None:intergenic 25.0%
! CAAGAATTTAGTGAAAGTAA+TGG - chr7_3:26900299-26900318 None:intergenic 25.0%
! AATTCTTGCTAAAACTTGTA+AGG + chr7_3:26900311-26900330 Msa1098890:intron 25.0%
!! CTTCCTTCAATAATTTTCTA+AGG + chr7_3:26900389-26900408 Msa1098890:intron 25.0%
! AACCCTTAGAAAATTATTGA+AGG - chr7_3:26900395-26900414 None:intergenic 25.0%
! AGAAGATTAAGCTAAACTAT+GGG - chr7_3:26900473-26900492 None:intergenic 25.0%
! TAGAAGATTAAGCTAAACTA+TGG - chr7_3:26900474-26900493 None:intergenic 25.0%
! GAGTAAAAATAAATCAGACA+AGG - chr7_3:26900624-26900643 None:intergenic 25.0%
!!! ATGTTCTAAAGAAATTGAAG+CGG + chr7_3:26900773-26900792 Msa1098890:CDS 25.0%
! ATGATTGTTAAATCATCCAT+AGG - chr7_3:26900858-26900877 None:intergenic 25.0%
AAAGTTTCAAACCCAACAAA+AGG - chr7_3:26897778-26897797 None:intergenic 30.0%
TGAAAACACAGAGAATAGTT+TGG + chr7_3:26897936-26897955 Msa1098890:CDS 30.0%
GGAAAAGTTAATTACAGTCT+CGG - chr7_3:26898031-26898050 None:intergenic 30.0%
TTTGTAATTCAAATGTGCTG+TGG + chr7_3:26898171-26898190 Msa1098890:intron 30.0%
TTGTAATTCAAATGTGCTGT+GGG + chr7_3:26898172-26898191 Msa1098890:intron 30.0%
AAATTAACACTTACGTGATC+TGG + chr7_3:26898308-26898327 Msa1098890:intron 30.0%
GTTACTTAATTCACGTGAAT+TGG - chr7_3:26898562-26898581 None:intergenic 30.0%
TGCAACACATTCAAAACTTA+GGG - chr7_3:26898616-26898635 None:intergenic 30.0%
!!! AAGGGTATTTTTGTCAAATC+TGG + chr7_3:26898794-26898813 Msa1098890:intron 30.0%
!! AGGGTATTTTTGTCAAATCT+GGG + chr7_3:26898795-26898814 Msa1098890:intron 30.0%
TTGTAATTCAAATGCGTTGT+GGG + chr7_3:26898873-26898892 Msa1098890:intron 30.0%
ATGAATCATATTAGAACCCA+AGG - chr7_3:26899437-26899456 None:intergenic 30.0%
TTTATTTCGGTGAATTACAG+TGG + chr7_3:26899498-26899517 Msa1098890:intron 30.0%
TTATTTCGGTGAATTACAGT+GGG + chr7_3:26899499-26899518 Msa1098890:intron 30.0%
GGGTCATACAAATCATATAT+TGG + chr7_3:26899589-26899608 Msa1098890:intron 30.0%
AACTTCCTCATTTAGATATC+GGG + chr7_3:26899650-26899669 Msa1098890:intron 30.0%
ATGAAATTAAAAACAAGGCG+AGG - chr7_3:26899774-26899793 None:intergenic 30.0%
!! TTTTCCTTTTAGGAACCTAA+CGG - chr7_3:26899907-26899926 None:intergenic 30.0%
CAAAATATATCTCTCTCAGA+AGG - chr7_3:26900111-26900130 None:intergenic 30.0%
! TGAGAGAGATATATTTTGTG+AGG + chr7_3:26900113-26900132 Msa1098890:intron 30.0%
! GAGAGAGATATATTTTGTGA+GGG + chr7_3:26900114-26900133 Msa1098890:intron 30.0%
! TCATGCCCTGTTTAAAATTA+TGG + chr7_3:26900346-26900365 Msa1098890:intron 30.0%
TAATAGGTTTCTTCTTGGAA+AGG + chr7_3:26900443-26900462 Msa1098890:intron 30.0%
AATAGGTTTCTTCTTGGAAA+GGG + chr7_3:26900444-26900463 Msa1098890:intron 30.0%
GTTCTTGCTTTCCATTAAAA+TGG + chr7_3:26900534-26900553 Msa1098890:intron 30.0%
!! AATTTCTTTAGAACATTCCG+AGG - chr7_3:26900769-26900788 None:intergenic 30.0%
!! GGTGTAACTAGATGTTTTTG+GGG - chr7_3:26898236-26898255 None:intergenic 35.0%
! GGGTGTAACTAGATGTTTTT+GGG - chr7_3:26898237-26898256 None:intergenic 35.0%
! TGGGTGTAACTAGATGTTTT+TGG - chr7_3:26898238-26898257 None:intergenic 35.0%
AACGTGAACTCAATTTACGT+TGG + chr7_3:26898358-26898377 Msa1098890:intron 35.0%
TCATAGCATACCTGAATTCA+AGG - chr7_3:26898447-26898466 None:intergenic 35.0%
AATGGATCAGTACGAAATCT+AGG - chr7_3:26898498-26898517 None:intergenic 35.0%
!!! GTTATTTTTCTTCTGCACCT+TGG - chr7_3:26898531-26898550 None:intergenic 35.0%
CTGCAACACATTCAAAACTT+AGG - chr7_3:26898617-26898636 None:intergenic 35.0%
TGGGTGTAACTGAAATTTCA+TGG + chr7_3:26898814-26898833 Msa1098890:intron 35.0%
GGGTGTAACTGAAATTTCAT+GGG + chr7_3:26898815-26898834 Msa1098890:intron 35.0%
GGTGTAACTGAAATTTCATG+GGG + chr7_3:26898816-26898835 Msa1098890:intron 35.0%
CACAACGCATTTGAATTACA+AGG - chr7_3:26898874-26898893 None:intergenic 35.0%
CTTGTAATTCAAATGCGTTG+TGG + chr7_3:26898872-26898891 Msa1098890:intron 35.0%
ATAAGCTAGGTAACATTCGA+GGG - chr7_3:26899085-26899104 None:intergenic 35.0%
!!! TATTTTTTTGGTGACAGCTG+AGG + chr7_3:26899118-26899137 Msa1098890:intron 35.0%
! ATTCCATTTTCCCAGTTGTT+GGG - chr7_3:26899173-26899192 None:intergenic 35.0%
! TATTCCATTTTCCCAGTTGT+TGG - chr7_3:26899174-26899193 None:intergenic 35.0%
TGGGAAAATGGAATACAAGT+AGG + chr7_3:26899179-26899198 Msa1098890:intron 35.0%
AGGGAAAAGTAGTAACACTT+TGG + chr7_3:26899241-26899260 Msa1098890:intron 35.0%
ATTCACAGGAGATACAGTAA+TGG - chr7_3:26899363-26899382 None:intergenic 35.0%
CATGCTTACTTGAAATTCAC+AGG - chr7_3:26899377-26899396 None:intergenic 35.0%
! CTGTGAATTTCAAGTAAGCA+TGG + chr7_3:26899375-26899394 Msa1098890:intron 35.0%
AGGAAATAATCCTTCTTCTG+TGG - chr7_3:26899679-26899698 None:intergenic 35.0%
AAGATGACTGCTTAGTTGTT+TGG + chr7_3:26899939-26899958 Msa1098890:intron 35.0%
AATATATCTCTCTCAGAAGG+AGG - chr7_3:26900108-26900127 None:intergenic 35.0%
CTGAAAAATTGGACGGAAAA+AGG - chr7_3:26900217-26900236 None:intergenic 35.0%
CACGTTAATAGGTTTCTTCT+TGG + chr7_3:26900438-26900457 Msa1098890:intron 35.0%
AAGCTGTGAATTCCTTAAGT+GGG + chr7_3:26900685-26900704 Msa1098890:CDS 35.0%
! GGGAATGGTTCTACAAAATT+AGG + chr7_3:26900705-26900724 Msa1098890:CDS 35.0%
ATTTCTTTGCGAAATGCTCT+TGG + chr7_3:26900804-26900823 Msa1098890:CDS 35.0%
CGTAGATCAACAACTCTTGT+CGG - chr7_3:26897808-26897827 None:intergenic 40.0%
AGTTGTTGATCTACGCCTTA+TGG + chr7_3:26897813-26897832 Msa1098890:exon 40.0%
TTCTGGTAGAAATCTGTTGC+AGG + chr7_3:26897987-26898006 Msa1098890:CDS 40.0%
TCTGGTAGAAATCTGTTGCA+GGG + chr7_3:26897988-26898007 Msa1098890:CDS 40.0%
ATCCATTCTAAGTGCAACCA+AGG + chr7_3:26898511-26898530 Msa1098890:intron 40.0%
GAATGCAGAAGAAGATGAAG+AGG + chr7_3:26898739-26898758 Msa1098890:intron 40.0%
CATAAGCTAGGTAACATTCG+AGG - chr7_3:26899086-26899105 None:intergenic 40.0%
AAGAAATGAGCCAACTGTCA+AGG + chr7_3:26899310-26899329 Msa1098890:CDS 40.0%
AGAAATGAGCCAACTGTCAA+GGG + chr7_3:26899311-26899330 Msa1098890:CDS 40.0%
AGAATTGTTCCCTTGACAGT+TGG - chr7_3:26899323-26899342 None:intergenic 40.0%
! CCAAGGCACCAAGTAAAATA+GGG - chr7_3:26899420-26899439 None:intergenic 40.0%
!!! CCTATTTTACTTGGTGCCTT+GGG + chr7_3:26899418-26899437 Msa1098890:intron 40.0%
ATGCAGCATCCATCATACTT+CGG - chr7_3:26899528-26899547 None:intergenic 40.0%
GAAGGATTATTTCCTATGCG+CGG + chr7_3:26899684-26899703 Msa1098890:CDS 40.0%
AAAAACAAGGCGAGGAAAGT+CGG - chr7_3:26899766-26899785 None:intergenic 40.0%
! TAGGAACCTAACGGAGTTTT+TGG - chr7_3:26899898-26899917 None:intergenic 40.0%
AACTCCGTTAGGTTCCTAAA+AGG + chr7_3:26899900-26899919 Msa1098890:intron 40.0%
TGACTGCTTAGTTGTTTGGT+AGG + chr7_3:26899943-26899962 Msa1098890:intron 40.0%
TTGGTAGGAGAGGAAACATA+TGG + chr7_3:26899958-26899977 Msa1098890:intron 40.0%
GAGGAAGGAAAAATGCTTTG+TGG - chr7_3:26900140-26900159 None:intergenic 40.0%
!!! AGCTTTTAGAACCAACTGAG+TGG - chr7_3:26900658-26900677 None:intergenic 40.0%
GAAGCTGTGAATTCCTTAAG+TGG + chr7_3:26900684-26900703 Msa1098890:CDS 40.0%
GTGAATTCCTTAAGTGGGAA+TGG + chr7_3:26900690-26900709 Msa1098890:CDS 40.0%
TGTAGAACCATTCCCACTTA+AGG - chr7_3:26900700-26900719 None:intergenic 40.0%
CTCTTGGAATGATGCCAAAT+AGG + chr7_3:26900820-26900839 Msa1098890:CDS 40.0%
ATGCCAAATAGGACTACTGA+TGG + chr7_3:26900831-26900850 Msa1098890:CDS 40.0%
AGAATACCGGAGAAGCCATA+AGG - chr7_3:26897831-26897850 None:intergenic 45.0%
GAGAGAGAGAGAGAGAATAC+CGG - chr7_3:26897844-26897863 None:intergenic 45.0%
GTCTCGGATCTCTTAAGAAG+TGG - chr7_3:26898015-26898034 None:intergenic 45.0%
TGTGTGACAAAGGGCAACTT+TGG - chr7_3:26898287-26898306 None:intergenic 45.0%
CACCTTGGTTGCACTTAGAA+TGG - chr7_3:26898516-26898535 None:intergenic 45.0%
TCACGTACGCTGCCAAATTT+AGG + chr7_3:26898647-26898666 Msa1098890:intron 45.0%
TGCAGAAGAAGATGAAGAGG+AGG + chr7_3:26898742-26898761 Msa1098890:intron 45.0%
!! ATGAAGCACCGACACAAACA+GGG - chr7_3:26898990-26899009 None:intergenic 45.0%
!! TATGAAGCACCGACACAAAC+AGG - chr7_3:26898991-26899010 None:intergenic 45.0%
! TTTGGTGACAGCTGAGGAAA+TGG + chr7_3:26899124-26899143 Msa1098890:intron 45.0%
TGAGGAAATGGAACGAACGT+TGG + chr7_3:26899136-26899155 Msa1098890:CDS 45.0%
GAGGAAATGGAACGAACGTT+GGG + chr7_3:26899137-26899156 Msa1098890:CDS 45.0%
TGATCTTGGACCCAACAACT+GGG + chr7_3:26899160-26899179 Msa1098890:CDS 45.0%
!!! CCCTATTTTACTTGGTGCCT+TGG + chr7_3:26899417-26899436 Msa1098890:intron 45.0%
! CCCAAGGCACCAAGTAAAAT+AGG - chr7_3:26899421-26899440 None:intergenic 45.0%
GGTGTCCCGATATCTAAATG+AGG - chr7_3:26899658-26899677 None:intergenic 45.0%
AAAACAAGGCGAGGAAAGTC+GGG - chr7_3:26899765-26899784 None:intergenic 45.0%
CTTGAGCCAAAAACTCCGTT+AGG + chr7_3:26899889-26899908 Msa1098890:intron 45.0%
GCTTAGTTGTTTGGTAGGAG+AGG + chr7_3:26899948-26899967 Msa1098890:intron 45.0%
TGTTACGGAACGCCAAATGA+CGG + chr7_3:26900166-26900185 Msa1098890:intron 45.0%
CGAAAAACTCCTCCGTCATT+TGG - chr7_3:26900181-26900200 None:intergenic 45.0%
GGACCATCAGTAGTCCTATT+TGG - chr7_3:26900837-26900856 None:intergenic 45.0%
TAGGACTACTGATGGTCCTA+TGG + chr7_3:26900839-26900858 Msa1098890:CDS 45.0%
!!! TTTATATTTTTATAATTTTC+GGG + chr7_3:26899569-26899588 Msa1098890:intron 5.0%
TCTACGCCTTATGGCTTCTC+CGG + chr7_3:26897822-26897841 Msa1098890:exon 50.0%
GAACGAACGTTGGGTGATCT+TGG + chr7_3:26899146-26899165 Msa1098890:CDS 50.0%
GTGATCTTGGACCCAACAAC+TGG + chr7_3:26899159-26899178 Msa1098890:CDS 50.0%
GGACCCAACAACTGGGAAAA+TGG + chr7_3:26899167-26899186 Msa1098890:CDS 50.0%
!! AGTGGGCTACCGAAGTATGA+TGG + chr7_3:26899516-26899535 Msa1098890:intron 50.0%
TATCGGGACACCACAGAAGA+AGG + chr7_3:26899666-26899685 Msa1098890:CDS 50.0%
AAACAAGGCGAGGAAAGTCG+GGG - chr7_3:26899764-26899783 None:intergenic 50.0%
TCCTTCCTCGCTCACTGTTA+CGG + chr7_3:26900151-26900170 Msa1098890:intron 50.0%
TAGAACCAACTGAGTGGCAC+TGG - chr7_3:26900652-26900671 None:intergenic 50.0%
ACATTCCGAGGCTGTTGAGT+TGG - chr7_3:26900757-26900776 None:intergenic 50.0%
! CGTCAGCTAGCTTCTGCTTC+TGG + chr7_3:26897970-26897989 Msa1098890:CDS 55.0%
GTCAGCGTCCCTGTTTGTGT+CGG + chr7_3:26898979-26898998 Msa1098890:intron 55.0%
TCCGTAACAGTGAGCGAGGA+AGG - chr7_3:26900155-26900174 None:intergenic 55.0%
TACGGAACGCCAAATGACGG+AGG + chr7_3:26900169-26900188 Msa1098890:intron 55.0%
! TCACACCAGTGCCACTCAGT+TGG + chr7_3:26900644-26900663 Msa1098890:intron 55.0%
TGCAGCCAACTCAACAGCCT+CGG + chr7_3:26900749-26900768 Msa1098890:CDS 55.0%
TTCCTATGCGCGGAGACTCC+TGG + chr7_3:26899694-26899713 Msa1098890:CDS 60.0%
TCCTGGTGCAGCTCGAGCAT+GGG + chr7_3:26899711-26899730 Msa1098890:CDS 60.0%
GCGTTCCGTAACAGTGAGCG+AGG - chr7_3:26900159-26900178 None:intergenic 60.0%
CACCAGGAGTCTCCGCGCAT+AGG - chr7_3:26899699-26899718 None:intergenic 65.0%
CTCCTGGTGCAGCTCGAGCA+TGG + chr7_3:26899710-26899729 Msa1098890:CDS 65.0%
ACCCATGCTCGAGCTGCACC+AGG - chr7_3:26899715-26899734 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 26897700 26900881 26897700 ID=Msa1098890;Name=Msa1098890
chr7_3 mRNA 26897700 26900881 26897700 ID=Msa1098890-mRNA-1;Parent=Msa1098890;Name=Msa1098890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|0.85|1|1|1|7|0|203
chr7_3 exon 26897700 26897843 26897700 ID=Msa1098890-mRNA-1:exon:5703;Parent=Msa1098890-mRNA-1
chr7_3 exon 26897928 26898035 26897928 ID=Msa1098890-mRNA-1:exon:5704;Parent=Msa1098890-mRNA-1
chr7_3 exon 26899135 26899196 26899135 ID=Msa1098890-mRNA-1:exon:5705;Parent=Msa1098890-mRNA-1
chr7_3 exon 26899304 26899387 26899304 ID=Msa1098890-mRNA-1:exon:5706;Parent=Msa1098890-mRNA-1
chr7_3 exon 26899518 26899549 26899518 ID=Msa1098890-mRNA-1:exon:5707;Parent=Msa1098890-mRNA-1
chr7_3 exon 26899665 26899746 26899665 ID=Msa1098890-mRNA-1:exon:5708;Parent=Msa1098890-mRNA-1
chr7_3 exon 26900653 26900881 26900653 ID=Msa1098890-mRNA-1:exon:5709;Parent=Msa1098890-mRNA-1
chr7_3 five_prime_UTR 26897700 26897831 26897700 ID=Msa1098890-mRNA-1:five_prime_utr;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26897832 26897843 26897832 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26897928 26898035 26897928 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26899135 26899196 26899135 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26899304 26899387 26899304 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26899518 26899549 26899518 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26899665 26899746 26899665 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3 CDS 26900653 26900881 26900653 ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
Gene Sequence

>Msa1098890

ATGGCTTCTCCGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAATGGGCTACCGAAGTATGATGGATGCTGCATTTATATCGGGACACCACAGAAGAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCATGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTTGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAG

Protein sequence

>Msa1098890

MASPRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMK