AlfalfaGEDB | Msa1098890

M. sativa cultivar zhongmu-4 / Msa1098890

KEGG: -
GO: -
PFAM: PF00169.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098890	XP_003617385.1	100.000	203	0	0	1	203	1	203	9.83e-148	429

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098890	G7K3B9	100.000	203	0	0	1	203	1	203	4.70e-148	429

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa1098890	0.806437	8.228165e-50	-8.615850e-47
Msa0002560	Msa1098890	0.886664	2.807821e-72	-8.615850e-47
Msa0002680	Msa1098890	0.824306	8.671089e-54	-8.615850e-47
Msa0002710	Msa1098890	0.806864	6.687773e-50	-8.615850e-47
Msa0003220	Msa1098890	0.885769	6.110342e-72	-8.615850e-47
Msa0003270	Msa1098890	0.839391	1.629772e-57	-8.615850e-47
Msa0005270	Msa1098890	0.801885	7.288718e-49	-8.615850e-47
Msa0005620	Msa1098890	0.838990	2.070060e-57	-8.615850e-47
Msa0006110	Msa1098890	0.803403	3.544498e-49	-8.615850e-47
Msa0008220	Msa1098890	0.875686	2.533593e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098890	MtrunA17_Chr5g0442811	100.000	203	0	0	1	203	1	203	9.05e-152	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098890	AT2G30880.2	85.644	202	29	0	2	203	6	207	4.56e-131	373
Msa1098890	AT2G30880.1	85.644	202	29	0	2	203	6	207	5.66e-129	372

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Find 51 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTCAAACCCAACAAA+AGG	0.446581	7_3:-26897775	None:intergenic
AACTTCCTCATTTAGATATC+GGG	0.385027	7_3:+26899650	Msa1098890:intron
AAGAAATGAGCCAACTGTCA+AGG	0.539148	7_3:+26899310	Msa1098890:CDS
AAGCTGTGAATTCCTTAAGT+GGG	0.598255	7_3:+26900685	Msa1098890:CDS
AATTTCTTTAGAACATTCCG+AGG	0.603804	7_3:-26900766	None:intergenic
ACATTCCGAGGCTGTTGAGT+TGG	0.543936	7_3:-26900754	None:intergenic
ACCCATGCTCGAGCTGCACC+AGG	0.524783	7_3:-26899712	None:intergenic
AGAAATGAGCCAACTGTCAA+GGG	0.571886	7_3:+26899311	Msa1098890:CDS
AGAATACCGGAGAAGCCATA+AGG	0.527526	7_3:-26897828	None:intergenic
AGAATTGTTCCCTTGACAGT+TGG	0.531526	7_3:-26899320	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTCAAACCCAACAAA+AGG	-	chr7_3:26897778-26897797	None:intergenic	30.0%
TGAAAACACAGAGAATAGTT+TGG	+	chr7_3:26897936-26897955	Msa1098890:CDS	30.0%
GGAAAAGTTAATTACAGTCT+CGG	-	chr7_3:26898031-26898050	None:intergenic	30.0%
TTTGTAATTCAAATGTGCTG+TGG	+	chr7_3:26898171-26898190	Msa1098890:intron	30.0%
TTGTAATTCAAATGTGCTGT+GGG	+	chr7_3:26898172-26898191	Msa1098890:intron	30.0%
AAATTAACACTTACGTGATC+TGG	+	chr7_3:26898308-26898327	Msa1098890:intron	30.0%
GTTACTTAATTCACGTGAAT+TGG	-	chr7_3:26898562-26898581	None:intergenic	30.0%
TGCAACACATTCAAAACTTA+GGG	-	chr7_3:26898616-26898635	None:intergenic	30.0%
TTGTAATTCAAATGCGTTGT+GGG	+	chr7_3:26898873-26898892	Msa1098890:intron	30.0%
ATGAATCATATTAGAACCCA+AGG	-	chr7_3:26899437-26899456	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	26897700	26900881	26897700	ID=Msa1098890;Name=Msa1098890
chr7_3	mRNA	26897700	26900881	26897700	ID=Msa1098890-mRNA-1;Parent=Msa1098890;Name=Msa1098890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132\|1\|0.85\|1\|1\|1\|7\|0\|203
chr7_3	exon	26897700	26897843	26897700	ID=Msa1098890-mRNA-1:exon:5703;Parent=Msa1098890-mRNA-1
chr7_3	exon	26897928	26898035	26897928	ID=Msa1098890-mRNA-1:exon:5704;Parent=Msa1098890-mRNA-1
chr7_3	exon	26899135	26899196	26899135	ID=Msa1098890-mRNA-1:exon:5705;Parent=Msa1098890-mRNA-1
chr7_3	exon	26899304	26899387	26899304	ID=Msa1098890-mRNA-1:exon:5706;Parent=Msa1098890-mRNA-1
chr7_3	exon	26899518	26899549	26899518	ID=Msa1098890-mRNA-1:exon:5707;Parent=Msa1098890-mRNA-1
chr7_3	exon	26899665	26899746	26899665	ID=Msa1098890-mRNA-1:exon:5708;Parent=Msa1098890-mRNA-1
chr7_3	exon	26900653	26900881	26900653	ID=Msa1098890-mRNA-1:exon:5709;Parent=Msa1098890-mRNA-1
chr7_3	five_prime_UTR	26897700	26897831	26897700	ID=Msa1098890-mRNA-1:five_prime_utr;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26897832	26897843	26897832	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26897928	26898035	26897928	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26899135	26899196	26899135	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26899304	26899387	26899304	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26899518	26899549	26899518	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26899665	26899746	26899665	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1
chr7_3	CDS	26900653	26900881	26900653	ID=Msa1098890-mRNA-1:cds;Parent=Msa1098890-mRNA-1

Gene Sequence

>Msa1098890

ATGGCTTCTCCGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAATGGGCTACCGAAGTATGATGGATGCTGCATTTATATCGGGACACCACAGAAGAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCATGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTTGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAG

Protein sequence

>Msa1098890

MASPRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMK