AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127850 MtrunA17_Chr1g0194261 100.000 181 0 0 1 181 1 181 1.94e-135 375
Msa0127850 MtrunA17_Chr5g0413451 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0127850 MtrunA17_Chr5g0413441 99.448 181 1 0 1 181 1 181 5.44e-135 374
Msa0127850 MtrunA17_Chr7g0270301 98.895 181 2 0 1 181 1 181 1.72e-134 373
Msa0127850 MtrunA17_Chr6g0450081 98.895 181 2 0 1 181 1 181 2.15e-134 373
Msa0127850 MtrunA17_Chr5g0401761 86.667 180 24 0 1 180 1 180 3.16e-120 337
Msa0127850 MtrunA17_Chr4g0072861 63.277 177 65 0 1 177 1 177 4.55e-84 246
Msa0127850 MtrunA17_Chr5g0395631 61.582 177 68 0 1 177 1 177 5.74e-83 243
Msa0127850 MtrunA17_Chr4g0039591 60.452 177 70 0 1 177 1 177 1.18e-80 238
Msa0127850 MtrunA17_Chr5g0395641 55.495 182 79 1 1 180 1 182 1.10e-75 224
Msa0127850 MtrunA17_Chr1g0188111 51.934 181 87 0 1 181 1 181 1.16e-67 204
Msa0127850 MtrunA17_Chr8g0373271 48.485 165 82 3 18 180 17 180 7.80e-50 159
Msa0127850 MtrunA17_Chr2g0287721 34.831 178 105 2 5 173 5 180 3.73e-37 127
Msa0127850 MtrunA17_Chr5g0434561 34.659 176 112 2 1 173 1 176 3.10e-31 111
Msa0127850 MtrunA17_Chr5g0395651 63.291 79 27 1 1 77 1 79 7.78e-31 107
Msa0127850 MtrunA17_Chr5g0401071 32.065 184 122 2 1 181 1 184 3.01e-30 108
Msa0127850 MtrunA17_Chr4g0012371 31.847 157 106 1 18 173 1 157 4.38e-26 97.8
Msa0127850 MtrunA17_Chr2g0294701 31.638 177 105 2 15 177 18 192 8.39e-25 95.5
Msa0127850 MtrunA17_Chr7g0271761 31.073 177 106 2 15 177 18 192 2.12e-24 94.4
Msa0127850 MtrunA17_Chr4g0068171 31.638 177 105 2 15 177 18 192 7.00e-23 90.5
Msa0127850 MtrunA17_Chr5g0395671 51.020 49 24 0 132 180 44 92 9.27e-13 61.2
Msa0127850 MtrunA17_Chr1g0180291 34.118 85 52 1 18 98 15 99 1.89e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127850 AT1G10630.1 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0127850 AT1G10630.2 98.895 181 2 0 1 181 1 181 4.80e-134 372
Msa0127850 AT5G14670.2 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0127850 AT5G14670.3 98.895 181 2 0 1 181 1 181 8.40e-134 372
Msa0127850 AT3G62290.3 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0127850 AT3G62290.1 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0127850 AT3G62290.2 98.895 181 2 0 1 181 1 181 9.07e-134 372
Msa0127850 AT1G23490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.2 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.7 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.4 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.3 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.1 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.6 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT1G70490.5 98.895 181 2 0 1 181 1 181 1.17e-133 371
Msa0127850 AT2G47170.2 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0127850 AT2G47170.1 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0127850 AT2G47170.3 98.895 181 2 0 1 181 1 181 1.22e-133 371
Msa0127850 AT5G14670.1 98.343 181 3 0 1 181 1 181 6.10e-133 370
Msa0127850 AT2G15310.1 67.403 181 59 0 1 181 1 181 3.14e-91 265
Msa0127850 AT2G24765.1 62.147 177 67 0 1 177 1 177 2.10e-84 247
Msa0127850 AT5G17060.2 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0127850 AT5G17060.1 58.659 179 74 0 1 179 1 179 2.03e-81 239
Msa0127850 AT3G03120.1 59.887 177 71 0 1 177 1 177 1.26e-80 238
Msa0127850 AT3G22950.1 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0127850 AT3G22950.2 53.039 181 85 0 1 181 1 181 1.17e-70 212
Msa0127850 AT2G24765.2 64.844 128 45 0 1 128 1 128 1.76e-60 184
Msa0127850 AT3G03120.2 62.308 130 49 0 1 130 1 130 1.35e-59 182
Msa0127850 AT1G02430.1 48.936 188 82 5 1 176 1 186 6.81e-57 177
Msa0127850 AT1G02440.1 45.699 186 91 4 1 176 1 186 2.57e-55 173
Msa0127850 AT2G18390.1 48.485 165 82 3 18 180 17 180 3.76e-49 157
Msa0127850 AT1G02430.2 47.205 161 75 4 1 153 1 159 3.52e-45 147
Msa0127850 AT5G52210.1 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0127850 AT5G52210.2 34.091 176 109 1 5 173 5 180 6.52e-36 124
Msa0127850 AT3G49870.1 34.091 176 113 2 1 173 1 176 2.28e-32 115
Msa0127850 AT5G67560.1 33.742 163 107 1 12 173 14 176 2.66e-31 112
Msa0127850 AT5G37680.1 33.523 176 114 2 1 173 1 176 2.09e-30 109
Msa0127850 AT3G49870.2 33.121 157 104 1 18 173 1 157 5.30e-29 105
Msa0127850 AT3G49860.1 32.530 166 111 1 16 180 10 175 2.17e-28 104
Msa0127850 AT1G02440.2 33.117 154 67 3 1 153 1 119 3.86e-26 97.1
Msa0127850 AT1G09180.1 32.961 179 104 2 13 177 16 192 2.98e-25 97.1
Msa0127850 AT3G62560.1 31.638 177 105 2 15 177 18 192 1.40e-24 95.1
Msa0127850 AT5G37680.2 32.812 128 86 0 46 173 2 129 4.49e-24 92.4
Msa0127850 AT1G56330.1 31.638 177 105 2 15 177 18 192 5.33e-24 93.6
Msa0127850 AT4G02080.1 31.073 177 106 2 15 177 18 192 5.86e-24 93.6

Find 64 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1_3:-57460481 None:intergenic
CATAGAGATTTATTAGTTAA+AGG 0.217116 1_3:+57461169 Msa0127850:exon
GATAAACACGTTACTCAATT+TGG 0.219430 1_3:+57459006 Msa0127850:five_prime_UTR
AAGTATACGCATCTCTTTCT+TGG 0.288003 1_3:-57459582 None:intergenic
TTGTATTACCATTGGGAATC+AGG 0.288458 1_3:-57458975 None:intergenic
GGATTCAGAAAAGTTGAAAA+TGG 0.318550 1_3:+57459523 Msa0127850:intron
AATCATTTCTCTCTTCTTCA+AGG 0.351699 1_3:+57459134 Msa0127850:five_prime_UTR
TCAGCAGCATTCATAGCATT+TGG 0.364943 1_3:-57460829 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1_3:+57459802 Msa0127850:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1_3:+57459586 Msa0127850:CDS
GAATCGTAATGTGATTTGAT+TGG 0.395299 1_3:-57461496 None:intergenic
CAATTATGATCTCCAGCATC+TGG 0.404087 1_3:+57461216 Msa0127850:three_prime_UTR
GATTCAGAAAAGTTGAAAAT+GGG 0.407021 1_3:+57459524 Msa0127850:intron
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1_3:+57459638 Msa0127850:CDS
AATTGAGTAACGTGTTTATC+CGG 0.433601 1_3:-57459003 None:intergenic
CAATTAACTTCACAATCAAA+AGG 0.441411 1_3:-57461375 None:intergenic
CATTGGGAATCAGGTGTAAC+CGG 0.443322 1_3:-57458966 None:intergenic
CGGTGTCTTTGTATTACCAT+TGG 0.447147 1_3:-57458983 None:intergenic
GGTGTCTTTGTATTACCATT+GGG 0.447257 1_3:-57458982 None:intergenic
CAGAGCACATGTGCCACATC+TGG 0.447819 1_3:+57460998 Msa0127850:CDS
TTGGAGTTTCTCTCAACGTC+AGG 0.452967 1_3:-57459065 None:intergenic
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1_3:+57459818 Msa0127850:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1_3:+57460875 Msa0127850:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1_3:+57459552 Msa0127850:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1_3:+57459810 Msa0127850:CDS
CAGATGTGGCACATGTGCTC+TGG 0.476593 1_3:-57460997 None:intergenic
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1_3:-57459636 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1_3:-57459680 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1_3:+57461051 Msa0127850:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1_3:+57460540 Msa0127850:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1_3:-57459571 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1_3:+57460504 Msa0127850:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1_3:+57459803 Msa0127850:CDS
AATTAACTTCACAATCAAAA+GGG 0.535794 1_3:-57461374 None:intergenic
CAGGCAGGAAAACCAGATGC+TGG 0.540615 1_3:-57461228 None:intergenic
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1_3:+57459605 Msa0127850:CDS
GACTTTATGAAGGACTTGAC+TGG 0.563819 1_3:+57461026 Msa0127850:CDS
ATAAAGTCCTTCACCAGATG+TGG 0.566017 1_3:-57461011 None:intergenic
AGAACTGCAGTCTATTATTG+TGG 0.567785 1_3:+57461293 Msa0127850:three_prime_UTR
CGAGCAATGAAAATCTATGC+AGG 0.568538 1_3:-57461247 None:intergenic
CAATGAAAATCTATGCAGGC+AGG 0.573708 1_3:-57461243 None:intergenic
TCTGGTGAAGGACTTTATGA+AGG 0.585343 1_3:+57461016 Msa0127850:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1_3:-57460457 None:intergenic
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1_3:+57460447 Msa0127850:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1_3:+57459668 Msa0127850:CDS
ATACATACCGATAGTAGGAA+TGG 0.605406 1_3:-57459675 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1_3:-57459633 None:intergenic
CGGTTACACCTGATTCCCAA+TGG 0.616101 1_3:+57458967 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1_3:+57460847 Msa0127850:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1_3:+57459813 Msa0127850:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1_3:+57459590 Msa0127850:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1_3:-57460882 None:intergenic
ACATGTGCCACATCTGGTGA+AGG 0.638525 1_3:+57461004 Msa0127850:CDS
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1_3:+57459824 Msa0127850:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1_3:+57460473 Msa0127850:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1_3:+57460505 Msa0127850:CDS
CAATGGTAATACAAAGACAC+CGG 0.657660 1_3:+57458984 Msa0127850:five_prime_UTR
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1_3:+57459773 Msa0127850:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1_3:-57460529 None:intergenic
GTTGTTCTATAAATACGCGT+AGG 0.682859 1_3:+57459042 Msa0127850:five_prime_UTR
TGTATATGTAGGGTTCAATG+TGG 0.687704 1_3:+57459764 Msa0127850:intron
CTAATAGACAGACAAAGACG+AGG 0.693007 1_3:-57461409 None:intergenic
GCTGCACAGGATGTTGAATG+AGG 0.712176 1_3:+57460553 Msa0127850:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1_3:-57460461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAACTATCTTAAAA+AGG - chr1_3:57461524-57461543 None:intergenic 10.0%
!!! CATGATTTTGATTTCAATTT+TGG + chr1_3:57459342-57459361 Msa0127850:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1_3:57459992-57460011 None:intergenic 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1_3:57460091-57460110 Msa0127850:intron 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1_3:57460092-57460111 Msa0127850:intron 20.0%
!! TATGATGTACTATAATCTTT+CGG + chr1_3:57460325-57460344 Msa0127850:intron 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + chr1_3:57460603-57460622 Msa0127850:intron 20.0%
!! TCACTTATTCAACATATATT+TGG - chr1_3:57460640-57460659 None:intergenic 20.0%
!! CATAGAGATTTATTAGTTAA+AGG + chr1_3:57461169-57461188 Msa0127850:exon 20.0%
!! AATTAACTTCACAATCAAAA+GGG - chr1_3:57461377-57461396 None:intergenic 20.0%
! TAACAAAGAGAAAAAGAAGT+TGG - chr1_3:57459087-57459106 None:intergenic 25.0%
!! TTCTTTTTCTCTTTGTTACA+AGG + chr1_3:57459089-57459108 Msa0127850:five_prime_UTR 25.0%
! TATCATATGCATGTTATTAC+TGG + chr1_3:57459294-57459313 Msa0127850:intron 25.0%
! AATAACGTAATATATGCAGA+TGG - chr1_3:57459420-57459439 None:intergenic 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + chr1_3:57459464-57459483 Msa0127850:intron 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + chr1_3:57459524-57459543 Msa0127850:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1_3:57459694-57459713 Msa0127850:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1_3:57459736-57459755 Msa0127850:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1_3:57459753-57459772 Msa0127850:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1_3:57459754-57459773 Msa0127850:intron 25.0%
! ATTTCATTGATGCTATAACA+TGG + chr1_3:57459913-57459932 Msa0127850:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1_3:57460042-57460061 Msa0127850:intron 25.0%
! AAAAAAAAATCACTGCACAT+TGG - chr1_3:57460129-57460148 None:intergenic 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1_3:57460320-57460339 None:intergenic 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1_3:57460326-57460345 Msa0127850:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1_3:57460355-57460374 Msa0127850:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1_3:57460402-57460421 Msa0127850:intron 25.0%
! GTTGAATAAGTGAAAATGAA+AGG + chr1_3:57460647-57460666 Msa0127850:intron 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1_3:57460651-57460670 Msa0127850:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1_3:57460661-57460680 Msa0127850:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1_3:57460698-57460717 None:intergenic 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1_3:57460752-57460771 Msa0127850:intron 25.0%
!!! AACTAATGCCTTTCTTTTTT+GGG + chr1_3:57461129-57461148 Msa0127850:intron 25.0%
! CAATTAACTTCACAATCAAA+AGG - chr1_3:57461378-57461397 None:intergenic 25.0%
AATTGAGTAACGTGTTTATC+CGG - chr1_3:57459006-57459025 None:intergenic 30.0%
GATAAACACGTTACTCAATT+TGG + chr1_3:57459006-57459025 Msa0127850:five_prime_UTR 30.0%
AATCATTTCTCTCTTCTTCA+AGG + chr1_3:57459134-57459153 Msa0127850:five_prime_UTR 30.0%
TGATGATAGTATTGTTTGTG+TGG + chr1_3:57459502-57459521 Msa0127850:intron 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + chr1_3:57459523-57459542 Msa0127850:intron 30.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1_3:57459639-57459658 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1_3:57459638-57459657 Msa0127850:CDS 30.0%
GATTTCTGTGATCATGATTA+TGG + chr1_3:57459720-57459739 Msa0127850:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1_3:57459851-57459870 Msa0127850:intron 30.0%
TGATGCTATAACATGGTAAT+TGG + chr1_3:57459920-57459939 Msa0127850:intron 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1_3:57460194-57460213 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1_3:57460473-57460492 Msa0127850:CDS 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1_3:57460484-57460503 None:intergenic 30.0%
GTTGAATGAGTGAAAATGAA+AGG + chr1_3:57460705-57460724 Msa0127850:intron 30.0%
AATGAGTGAAAATGAAAGGT+TGG + chr1_3:57460593-57460612 Msa0127850:intron 30.0%
! TGAAAGGTTGGTTATTTATG+TGG + chr1_3:57460663-57460682 Msa0127850:intron 30.0%
! GAAAGGTTGGTTATTTATGT+GGG + chr1_3:57460722-57460741 Msa0127850:intron 30.0%
!! CAAAAAAGAAAGGCATTAGT+TGG - chr1_3:57461130-57461149 None:intergenic 30.0%
!!! CAACTAATGCCTTTCTTTTT+TGG + chr1_3:57461128-57461147 Msa0127850:intron 30.0%
GAATCGTAATGTGATTTGAT+TGG - chr1_3:57461499-57461518 None:intergenic 30.0%
TTGTATTACCATTGGGAATC+AGG - chr1_3:57458978-57458997 None:intergenic 35.0%
GGTGTCTTTGTATTACCATT+GGG - chr1_3:57458985-57459004 None:intergenic 35.0%
CAATGGTAATACAAAGACAC+CGG + chr1_3:57458984-57459003 Msa0127850:five_prime_UTR 35.0%
GTTGTTCTATAAATACGCGT+AGG + chr1_3:57459042-57459061 Msa0127850:five_prime_UTR 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - chr1_3:57459239-57459258 None:intergenic 35.0%
ATTCAATCATGCAATTCCAC+CGG + chr1_3:57459367-57459386 Msa0127850:intron 35.0%
AAGTATACGCATCTCTTTCT+TGG - chr1_3:57459585-57459604 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1_3:57459586-57459605 Msa0127850:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1_3:57459636-57459655 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1_3:57459668-57459687 Msa0127850:CDS 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1_3:57459678-57459697 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1_3:57459683-57459702 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1_3:57459764-57459783 Msa0127850:intron 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1_3:57459955-57459974 None:intergenic 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1_3:57459956-57459975 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1_3:57460062-57460081 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1_3:57460240-57460259 Msa0127850:intron 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1_3:57460248-57460267 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1_3:57460299-57460318 None:intergenic 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1_3:57460300-57460319 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1_3:57460312-57460331 None:intergenic 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1_3:57460487-57460506 Msa0127850:CDS 35.0%
GCTGAATGAGTGAAAATGAA+AGG + chr1_3:57460589-57460608 Msa0127850:intron 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1_3:57460734-57460753 Msa0127850:intron 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1_3:57460756-57460775 Msa0127850:intron 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1_3:57461051-57461070 Msa0127850:CDS 35.0%
!!! TAATGCCTTTCTTTTTTGGG+CGG + chr1_3:57461132-57461151 Msa0127850:intron 35.0%
AGAACTGCAGTCTATTATTG+TGG + chr1_3:57461293-57461312 Msa0127850:three_prime_UTR 35.0%
CGGTGTCTTTGTATTACCAT+TGG - chr1_3:57458986-57459005 None:intergenic 40.0%
GATCTGGAAGAAAAGAGAAG+AGG - chr1_3:57459163-57459182 None:intergenic 40.0%
CCAGAAGAGATATACAGATC+TGG - chr1_3:57459179-57459198 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + chr1_3:57459176-57459195 Msa0127850:intron 40.0%
CGTAACATGATCTACGAATC+CGG - chr1_3:57459389-57459408 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1_3:57459574-57459593 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1_3:57459590-57459609 Msa0127850:CDS 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1_3:57460236-57460255 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1_3:57460290-57460309 None:intergenic 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1_3:57460291-57460310 None:intergenic 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1_3:57460292-57460311 None:intergenic 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1_3:57460504-57460523 Msa0127850:CDS 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1_3:57460505-57460524 Msa0127850:CDS 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1_3:57460532-57460551 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1_3:57460832-57460851 None:intergenic 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1_3:57460847-57460866 Msa0127850:CDS 40.0%
! GTAATGGAAGCAGGAAGATA+AGG - chr1_3:57460939-57460958 None:intergenic 40.0%
! TGAGAATGAGTAATGGAAGC+AGG - chr1_3:57460948-57460967 None:intergenic 40.0%
ATGACGGTGAGAATGAGTAA+TGG - chr1_3:57460955-57460974 None:intergenic 40.0%
ATTACTCATTCTCACCGTCA+TGG + chr1_3:57460954-57460973 Msa0127850:intron 40.0%
ATAAAGTCCTTCACCAGATG+TGG - chr1_3:57461014-57461033 None:intergenic 40.0%
TCTGGTGAAGGACTTTATGA+AGG + chr1_3:57461016-57461035 Msa0127850:CDS 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1_3:57461026-57461045 Msa0127850:CDS 40.0%
AATCACCGCCCAAAAAAGAA+AGG - chr1_3:57461140-57461159 None:intergenic 40.0%
CAATTATGATCTCCAGCATC+TGG + chr1_3:57461216-57461235 Msa0127850:three_prime_UTR 40.0%
CAATGAAAATCTATGCAGGC+AGG - chr1_3:57461246-57461265 None:intergenic 40.0%
CGAGCAATGAAAATCTATGC+AGG - chr1_3:57461250-57461269 None:intergenic 40.0%
CTAATAGACAGACAAAGACG+AGG - chr1_3:57461412-57461431 None:intergenic 40.0%
TTGGAGTTTCTCTCAACGTC+AGG - chr1_3:57459068-57459087 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - chr1_3:57459322-57459341 None:intergenic 45.0%
AACATGATCTACGAATCCGG+TGG - chr1_3:57459386-57459405 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1_3:57459552-57459571 Msa0127850:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1_3:57459773-57459792 Msa0127850:intron 45.0%
AGAACATCAGCTTCACTGTC+TGG + chr1_3:57459802-57459821 Msa0127850:CDS 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1_3:57459803-57459822 Msa0127850:CDS 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1_3:57460460-57460479 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1_3:57460464-57460483 None:intergenic 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1_3:57460885-57460904 None:intergenic 45.0%
TGGAAGCAGGAAGATAAGGA+AGG - chr1_3:57460935-57460954 None:intergenic 45.0%
CTGCATGTACAGATCCATGA+CGG - chr1_3:57460971-57460990 None:intergenic 45.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1_3:57459810-57459829 Msa0127850:CDS 50.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1_3:57460540-57460559 Msa0127850:CDS 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1_3:57460553-57460572 Msa0127850:CDS 50.0%
CGTCATGGATCTGTACATGC+AGG + chr1_3:57460969-57460988 Msa0127850:intron 50.0%
ACATGTGCCACATCTGGTGA+AGG + chr1_3:57461004-57461023 Msa0127850:CDS 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1_3:57459605-57459624 Msa0127850:CDS 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1_3:57459813-57459832 Msa0127850:CDS 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1_3:57460450-57460469 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1_3:57460451-57460470 None:intergenic 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1_3:57461000-57461019 None:intergenic 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1_3:57460998-57461017 Msa0127850:CDS 55.0%
!! TTTGGGCGGTGATTTGCTGC+AGG + chr1_3:57461146-57461165 Msa0127850:intron 55.0%
CAGGCAGGAAAACCAGATGC+TGG - chr1_3:57461231-57461250 None:intergenic 55.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1_3:57459818-57459837 Msa0127850:CDS 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1_3:57459824-57459843 Msa0127850:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1_3:57460447-57460466 Msa0127850:intron 60.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1_3:57460875-57460894 Msa0127850:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57458968 57461565 57458968 ID=Msa0127850;Name=Msa0127850
chr1_3 mRNA 57458968 57461565 57458968 ID=Msa0127850-mRNA-1;Parent=Msa0127850;Name=Msa0127850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=199|1|1|1|0.83|0.71|7|392|181
chr1_3 exon 57458968 57459155 57458968 ID=Msa0127850-mRNA-1:exon:18207;Parent=Msa0127850-mRNA-1
chr1_3 exon 57459531 57459689 57459531 ID=Msa0127850-mRNA-1:exon:18208;Parent=Msa0127850-mRNA-1
chr1_3 exon 57459775 57459845 57459775 ID=Msa0127850-mRNA-1:exon:18209;Parent=Msa0127850-mRNA-1
chr1_3 exon 57460455 57460574 57460455 ID=Msa0127850-mRNA-1:exon:18210;Parent=Msa0127850-mRNA-1
chr1_3 exon 57460778 57460896 57460778 ID=Msa0127850-mRNA-1:exon:18211;Parent=Msa0127850-mRNA-1
chr1_3 exon 57460991 57461072 57460991 ID=Msa0127850-mRNA-1:exon:18212;Parent=Msa0127850-mRNA-1
chr1_3 exon 57461168 57461565 57461168 ID=Msa0127850-mRNA-1:exon:18213;Parent=Msa0127850-mRNA-1
chr1_3 five_prime_UTR 57458968 57459155 57458968 ID=Msa0127850-mRNA-1:five_prime_utr;Parent=Msa0127850-mRNA-1
chr1_3 five_prime_UTR 57459531 57459541 57459531 ID=Msa0127850-mRNA-1:five_prime_utr;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57459542 57459689 57459542 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57459775 57459845 57459775 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57460455 57460574 57460455 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57460778 57460896 57460778 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57460991 57461072 57460991 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 CDS 57461168 57461173 57461168 ID=Msa0127850-mRNA-1:cds;Parent=Msa0127850-mRNA-1
chr1_3 three_prime_UTR 57461174 57461565 57461174 ID=Msa0127850-mRNA-1:three_prime_utr;Parent=Msa0127850-mRNA-1
Gene Sequence

>Msa0127850

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG

Protein sequence

>Msa0127850

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*