AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096070 MtrunA17_Chr7g0235641 96.371 248 2 1 1 241 1 248 1.02e-176 485
Msa1096070 MtrunA17_Chr8g0339841 66.288 264 61 8 2 241 1 260 2.39e-107 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096070 AT3G25070.2 40.637 251 101 11 1 241 12 224 8.46e-43 145
Msa1096070 AT3G25070.1 40.891 247 98 11 5 241 3 211 7.80e-42 142

Find 83 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTATATGTAAATATTTA+AGG 0.061456 7_3:+19758104 Msa1096070:three_prime_UTR
CGTTCTCATGTTCCAAAGTT+TGG 0.243771 7_3:+19756591 Msa1096070:CDS
CAGCTTACTGATCAAATAAA+AGG 0.278490 7_3:-19758195 None:intergenic
AAGTGCACACCTCACTTTAG+AGG 0.290403 7_3:+19758067 Msa1096070:three_prime_UTR
AATTTAACTCCTTTATTATG+AGG 0.308361 7_3:+19757922 Msa1096070:three_prime_UTR
ATCGTTTGGGTTGATCATTT+TGG 0.317091 7_3:-19756685 None:intergenic
TGTCATTCGCAGGTTGGTTT+CGG 0.334584 7_3:-19757693 None:intergenic
TCGGAGAATCAATCAGAAAA+AGG 0.335779 7_3:+19756783 Msa1096070:CDS
TCCGAACTAACTCTTGGTTT+TGG 0.336462 7_3:-19756765 None:intergenic
TTGTCGAAATAAACTGTATA+AGG 0.343438 7_3:-19756639 None:intergenic
CTGGTAGAGATAGTCCTTCT+TGG 0.350219 7_3:+19757003 Msa1096070:CDS
CCTTCCCAATTGCCAAACTT+TGG 0.350561 7_3:-19756603 None:intergenic
CTCGATTAACCGGTCTCAAT+CGG 0.362293 7_3:-19757073 None:intergenic
TAATAAAGGAGTTAAATTAT+AGG 0.374519 7_3:-19757917 None:intergenic
GTTAACTCGCCGGCTCGTCC+TGG 0.387058 7_3:+19756870 Msa1096070:CDS
GGTCTCAATCGGGATCTTCC+AGG 0.388968 7_3:-19757062 None:intergenic
CTAGCAGTACTTTGTCTTGA+AGG 0.389113 7_3:-19756930 None:intergenic
GAGTTAAACTAAACTAGAAC+TGG 0.396098 7_3:-19758347 None:intergenic
AAATACACCCCTCATAATAA+AGG 0.408408 7_3:-19757931 None:intergenic
ATGTTCCAAAGTTTGGCAAT+TGG 0.415742 7_3:+19756598 Msa1096070:CDS
TGTTCCAAAGTTTGGCAATT+GGG 0.422530 7_3:+19756599 Msa1096070:CDS
AGTGCTGCTGTTCCAAAGTT+TGG 0.426330 7_3:+19757544 Msa1096070:CDS
GAGGAGAAGCACGTTGCGGC+TGG 0.428563 7_3:+19757631 Msa1096070:CDS
CCGGCTCGTCCTGGAGGTCA+TGG 0.432822 7_3:+19756879 Msa1096070:CDS
TCCAAAACCAAGAGTTAGTT+CGG 0.438652 7_3:+19756764 Msa1096070:CDS
TCATCCCACTCACCAAACTT+TGG 0.439708 7_3:-19757556 None:intergenic
ATGCACCAGGCACACCCAAC+GGG 0.439756 7_3:+19757656 Msa1096070:CDS
GATCTCCCGTTGGGTGTGCC+TGG 0.452434 7_3:-19757661 None:intergenic
TCGATTAACCGGTCTCAATC+GGG 0.454767 7_3:-19757072 None:intergenic
ATTTAACTCCTTTATTATGA+GGG 0.460439 7_3:+19757923 Msa1096070:three_prime_UTR
ATTGAGTCTTTGAAATTGTA+CGG 0.464664 7_3:+19754070 Msa1096070:five_prime_UTR
TGGTAGAGATAGTCCTTCTT+GGG 0.468532 7_3:+19757004 Msa1096070:CDS
TGATTCTCCGAACTAACTCT+TGG 0.475335 7_3:-19756771 None:intergenic
CAGTTTATTTCGACAAAGCT+CGG 0.484974 7_3:+19756646 Msa1096070:CDS
ACCTGAGCTTTGTCATTCGC+AGG 0.492598 7_3:-19757703 None:intergenic
CCAAAGTTTGGCAATTGGGA+AGG 0.497311 7_3:+19756603 Msa1096070:CDS
ACGTTCACCTCTTCATCGCC+AGG 0.506105 7_3:+19756971 Msa1096070:CDS
GTATAGCCATCAGCAGATGC+AGG 0.507216 7_3:-19757586 None:intergenic
CATCGCCAGGCTAAAACTCC+TGG 0.514302 7_3:+19756984 Msa1096070:CDS
GTACTCTTTCCTTCCCAAGA+AGG 0.526369 7_3:-19757017 None:intergenic
AAATAAAAGGAAGGTACACT+TGG 0.528036 7_3:-19758182 None:intergenic
GATAAGAATAGTGTTGTGAA+TGG 0.538931 7_3:+19757875 Msa1096070:three_prime_UTR
GAGCTTTGTCATTCGCAGGT+TGG 0.539046 7_3:-19757699 None:intergenic
ATAACATATGATCTCCCGTT+GGG 0.539515 7_3:-19757670 None:intergenic
CAAGAAGGACTATCTCTACC+AGG 0.547661 7_3:-19757002 None:intergenic
CGTCCTGGAGGTCATGGAGT+AGG 0.551535 7_3:+19756885 Msa1096070:CDS
GACAGCAGTCATGGTACACC+TGG 0.555414 7_3:+19757044 Msa1096070:CDS
TGTTCCAAAGTTTGGTGAGT+GGG 0.555787 7_3:+19757552 Msa1096070:CDS
CACTTTGAAGAGTGAAGTGC+GGG 0.556334 7_3:-19758049 None:intergenic
TGGAAGATCCCGATTGAGAC+CGG 0.561277 7_3:+19757064 Msa1096070:CDS
TAAGCATTCTGTTAACTCGC+CGG 0.562363 7_3:+19756860 Msa1096070:CDS
CCATGACCTCCAGGACGAGC+CGG 0.565142 7_3:-19756879 None:intergenic
TTTAACTCCTTTATTATGAG+GGG 0.566344 7_3:+19757924 Msa1096070:three_prime_UTR
AATGCACCAGGCACACCCAA+CGG 0.568490 7_3:+19757655 Msa1096070:CDS
AGTGACCCTGCATCTGCTGA+TGG 0.581402 7_3:+19757580 Msa1096070:CDS
GAACCTACTCCATGACCTCC+AGG 0.583850 7_3:-19756888 None:intergenic
CTGTTCCAAAGTTTGGTGAG+TGG 0.599037 7_3:+19757551 Msa1096070:CDS
TCTACAAAAGAACAAGGAGG+AGG 0.599395 7_3:+19756830 Msa1096070:CDS
GTTGCGGCTGGAAATGCACC+AGG 0.599588 7_3:+19757643 Msa1096070:CDS
AACTCGCCGGCTCGTCCTGG+AGG 0.599986 7_3:+19756873 Msa1096070:CDS
AGAGATAGTCCTTCTTGGGA+AGG 0.600332 7_3:+19757008 Msa1096070:CDS
AGTACATATGACAGCAGTCA+TGG 0.601803 7_3:+19757035 Msa1096070:CDS
TGCGGAATTACAACTGTCAA+CGG 0.606769 7_3:+19757967 Msa1096070:three_prime_UTR
AAGGAGTTAAATTATAGGAG+TGG 0.610154 7_3:-19757912 None:intergenic
TTACTGATCAAATAAAAGGA+AGG 0.611993 7_3:-19758191 None:intergenic
ACTTCTGCGATGTTTATCCT+CGG 0.613834 7_3:-19758137 None:intergenic
TTTGTCTTGAAGGTCTTCTG+CGG 0.623940 7_3:-19756920 None:intergenic
ACCTGCGAATGACAAAGCTC+AGG 0.626820 7_3:+19757702 Msa1096070:CDS
AAAGCTCGGAAAAGTCGACC+TGG 0.630252 7_3:+19756660 Msa1096070:CDS
TATAGCCATCAGCAGATGCA+GGG 0.631221 7_3:-19757585 None:intergenic
AATAAAAGGAAGGTACACTT+GGG 0.647673 7_3:-19758181 None:intergenic
CTACAAAAGAACAAGGAGGA+GGG 0.656438 7_3:+19756831 Msa1096070:CDS
GATAACATATGATCTCCCGT+TGG 0.663475 7_3:-19757671 None:intergenic
TTTAAGGCTCTCTCTGTCCG+AGG 0.665829 7_3:+19758120 Msa1096070:three_prime_UTR
AATTTAGATCCTCTAAAGTG+AGG 0.666117 7_3:-19758076 None:intergenic
GATCAACCCAAACGATCCTG+AGG 0.674934 7_3:+19756692 Msa1096070:CDS
GGGATATAAATTCAAGACGA+CGG 0.679929 7_3:-19758161 None:intergenic
TAACGATCTACAAAAGAACA+AGG 0.681801 7_3:+19756824 Msa1096070:CDS
GCGTGAGGAGAAGCACGTTG+CGG 0.685597 7_3:+19757627 Msa1096070:CDS
GCACTTTGAAGAGTGAAGTG+CGG 0.694094 7_3:-19758050 None:intergenic
GAGTCTTTGAAATTGTACGG+AGG 0.700042 7_3:+19754073 Msa1096070:five_prime_UTR
TAGTGTTGTGAATGGTCGTG+AGG 0.720734 7_3:+19757883 Msa1096070:three_prime_UTR
CGATCTACAAAAGAACAAGG+AGG 0.753407 7_3:+19756827 Msa1096070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGTATATTTTTATAGTTT+AGG + chr7_3:19755526-19755545 Msa1096070:intron 10.0%
!!! TAGTATATTTTTATAGTTTA+GGG + chr7_3:19755527-19755546 Msa1096070:intron 10.0%
!!! ATTTAATTTCGTTTTATGAA+TGG + chr7_3:19754580-19754599 Msa1096070:intron 15.0%
!!! TGGTATATTTTTATAGTTTA+GGG - chr7_3:19755379-19755398 None:intergenic 15.0%
!!! TTGGTATATTTTTATAGTTT+AGG - chr7_3:19755380-19755399 None:intergenic 15.0%
!!! ATTCAAGAATAGTTTTAAAA+AGG + chr7_3:19756100-19756119 Msa1096070:intron 15.0%
!! AAAAAAAAAATCAGTTGTAA+AGG - chr7_3:19757159-19757178 None:intergenic 15.0%
!! TAATAAAGGAGTTAAATTAT+AGG - chr7_3:19757920-19757939 None:intergenic 15.0%
!! CGTTTATATGTAAATATTTA+AGG + chr7_3:19758104-19758123 Msa1096070:three_prime_UTR 15.0%
!!! TGTTATGTTGAAACTATTTT+AGG + chr7_3:19754292-19754311 Msa1096070:intron 20.0%
!!! TTGAAACTATTTTAGGAAAA+GGG + chr7_3:19754299-19754318 Msa1096070:intron 20.0%
!! AGCAATTCAATTAGAATTAT+GGG + chr7_3:19754494-19754513 Msa1096070:intron 20.0%
!!! ATGATTTTCTTAGTTTATGA+TGG + chr7_3:19754525-19754544 Msa1096070:intron 20.0%
!! GAATTCGTAAATATAATTCT+TGG + chr7_3:19754676-19754695 Msa1096070:intron 20.0%
!!! ATAGCAACATTATATTTTCA+CGG - chr7_3:19754902-19754921 None:intergenic 20.0%
!! ATTATGCTTTCATAAAGAAA+TGG + chr7_3:19755203-19755222 Msa1096070:intron 20.0%
!!! ATTCAATTAATCAAGTTGTT+GGG - chr7_3:19755309-19755328 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+GGG - chr7_3:19755439-19755458 None:intergenic 20.0%
!! TATATGAAAATCCATCAATT+TGG + chr7_3:19755444-19755463 Msa1096070:intron 20.0%
!!! TAAAATTTTCTTTAATCTCG+AGG - chr7_3:19755624-19755643 None:intergenic 20.0%
!! GTAATACTATTATTTGTTCT+CGG + chr7_3:19755762-19755781 Msa1096070:intron 20.0%
!! GTAGACATAACTTATAATTA+AGG + chr7_3:19755963-19755982 Msa1096070:intron 20.0%
!!! TTTCTAGATCAATTTTAGAA+TGG + chr7_3:19756387-19756406 Msa1096070:intron 20.0%
!! AATGGATATAAATGAGTAAA+TGG + chr7_3:19756405-19756424 Msa1096070:intron 20.0%
!! TCTTTACAATAAATAGACAA+GGG - chr7_3:19757252-19757271 None:intergenic 20.0%
!! AATTTAACTCCTTTATTATG+AGG + chr7_3:19757922-19757941 Msa1096070:three_prime_UTR 20.0%
!! ATTTAACTCCTTTATTATGA+GGG + chr7_3:19757923-19757942 Msa1096070:three_prime_UTR 20.0%
!!! GAAAAATTGAATTTAAAGTG+TGG - chr7_3:19758261-19758280 None:intergenic 20.0%
!!! ATTGAGTCTTTGAAATTGTA+CGG + chr7_3:19754070-19754089 Msa1096070:five_prime_UTR 25.0%
!! TTGAAGAAAGTTGAGATTTT+TGG - chr7_3:19754134-19754153 None:intergenic 25.0%
!! AATTCACCTCTACAATTTTT+GGG + chr7_3:19754155-19754174 Msa1096070:five_prime_UTR 25.0%
!!! GTTGAAACTATTTTAGGAAA+AGG + chr7_3:19754298-19754317 Msa1096070:intron 25.0%
! GAGCAATTCAATTAGAATTA+TGG + chr7_3:19754493-19754512 Msa1096070:intron 25.0%
!!! ATGGATTTGTTTTGTTTTCA+TGG + chr7_3:19754599-19754618 Msa1096070:intron 25.0%
!!! TTGTTGCTATTTATAGTGAT+TGG + chr7_3:19754823-19754842 Msa1096070:intron 25.0%
! TATACATGTAGCTTATAAGT+TGG - chr7_3:19755024-19755043 None:intergenic 25.0%
! TATAAGCTACATGTATATGT+TGG + chr7_3:19755027-19755046 Msa1096070:intron 25.0%
! GTGATCTCATTATATGATTA+CGG + chr7_3:19755225-19755244 Msa1096070:intron 25.0%
!! TCAAGATAACTTTGTTTCTT+TGG + chr7_3:19755250-19755269 Msa1096070:intron 25.0%
!! TTCAATTAATCAAGTTGTTG+GGG - chr7_3:19755308-19755327 None:intergenic 25.0%
!! CATTCAATTAATCAAGTTGT+TGG - chr7_3:19755310-19755329 None:intergenic 25.0%
! TAGTTTAGGAACTAAATTGA+TGG - chr7_3:19755335-19755354 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG - chr7_3:19755440-19755459 None:intergenic 25.0%
!!! TGATGGATTTCATATAGTTT+AGG + chr7_3:19755497-19755516 Msa1096070:intron 25.0%
!! GATGGATTTCATATAGTTTA+GGG + chr7_3:19755498-19755517 Msa1096070:intron 25.0%
! TTATAGTTTAGGGACTAAAT+CGG + chr7_3:19755537-19755556 Msa1096070:intron 25.0%
!! AATTTTATATAACAGGGCAA+TGG + chr7_3:19755684-19755703 Msa1096070:intron 25.0%
! AATAGGTAAATAATAGAGCA+AGG - chr7_3:19756453-19756472 None:intergenic 25.0%
! CCAAAATCAGAGTTAATAAT+AGG - chr7_3:19756470-19756489 None:intergenic 25.0%
!! CCTATTATTAACTCTGATTT+TGG + chr7_3:19756467-19756486 Msa1096070:intron 25.0%
! CAACAAAAATACTGTAATAC+AGG - chr7_3:19756523-19756542 None:intergenic 25.0%
! CTCTTCAATTTGTGTTAATT+TGG + chr7_3:19756562-19756581 Msa1096070:intron 25.0%
! TTGTCGAAATAAACTGTATA+AGG - chr7_3:19756642-19756661 None:intergenic 25.0%
!!! GAATTTTGAAGAACTAAATC+TGG - chr7_3:19756723-19756742 None:intergenic 25.0%
! AAAAATCAGTTGTAAAGGAA+CGG - chr7_3:19757154-19757173 None:intergenic 25.0%
! CTCTTTACAATAAATAGACA+AGG - chr7_3:19757253-19757272 None:intergenic 25.0%
! AATAAGATAATAAACAGCCA+AGG + chr7_3:19757285-19757304 Msa1096070:intron 25.0%
!!! GTTTTTTTCAATTATAGCCT+TGG - chr7_3:19757305-19757324 None:intergenic 25.0%
! AAACTCAAATCATTTGTGAA+GGG - chr7_3:19757485-19757504 None:intergenic 25.0%
! AAAACTCAAATCATTTGTGA+AGG - chr7_3:19757486-19757505 None:intergenic 25.0%
! TTTAACTCCTTTATTATGAG+GGG + chr7_3:19757924-19757943 Msa1096070:three_prime_UTR 25.0%
!!! TATTTTTAAAGGGTAAAGTG+CGG + chr7_3:19757949-19757968 Msa1096070:three_prime_UTR 25.0%
! TTACTGATCAAATAAAAGGA+AGG - chr7_3:19758194-19758213 None:intergenic 25.0%
!!! AGAAAGTTGAGATTTTTGGT+TGG - chr7_3:19754130-19754149 None:intergenic 30.0%
! CAATTCACCTCTACAATTTT+TGG + chr7_3:19754154-19754173 Msa1096070:five_prime_UTR 30.0%
!! AACTATTTTAGGAAAAGGGT+AGG + chr7_3:19754303-19754322 Msa1096070:intron 30.0%
ACATTGACACATGACTATAT+TGG + chr7_3:19754421-19754440 Msa1096070:intron 30.0%
AACTAAGAAAATCATCACAC+AGG - chr7_3:19754520-19754539 None:intergenic 30.0%
ACGAAATTAAATTTCGAGCA+CGG - chr7_3:19754572-19754591 None:intergenic 30.0%
AGGCTAATACAAATACATCT+TGG - chr7_3:19754642-19754661 None:intergenic 30.0%
!! ATTAGCCTTGTTAGAAAAAC+AGG + chr7_3:19754654-19754673 Msa1096070:intron 30.0%
!! GAATTCCTGTTTTTCTAACA+AGG - chr7_3:19754662-19754681 None:intergenic 30.0%
GAAGTTGTTACATATTCACA+CGG - chr7_3:19754868-19754887 None:intergenic 30.0%
! TGTTGCTATTGTAGAAATGT+AGG + chr7_3:19754913-19754932 Msa1096070:intron 30.0%
!!! TTCGTTTTTTGTCTACCTTA+AGG - chr7_3:19754999-19755018 None:intergenic 30.0%
AACAAAAACTTTAACCTTGC+AGG + chr7_3:19755091-19755110 Msa1096070:intron 30.0%
TGTATAGTTTAGGGACTATT+TGG - chr7_3:19755399-19755418 None:intergenic 30.0%
!! GACGGATTTTGTATAGTTTA+GGG - chr7_3:19755408-19755427 None:intergenic 30.0%
!!! TGACGGATTTTGTATAGTTT+AGG - chr7_3:19755409-19755428 None:intergenic 30.0%
CTATACAAAATCCGTCAATT+TGG + chr7_3:19755412-19755431 Msa1096070:intron 30.0%
TTTCTTTAATCTCGAGGAAA+AGG - chr7_3:19755618-19755637 None:intergenic 30.0%
! TTGCTTTACAATAGAGCATT+TGG + chr7_3:19755654-19755673 Msa1096070:intron 30.0%
GGAAGTTGTTTGAATGTTAA+TGG + chr7_3:19755812-19755831 Msa1096070:intron 30.0%
GTTATGTCTACTTACTACAA+TGG - chr7_3:19755954-19755973 None:intergenic 30.0%
TTCATTATGTTGTCTGTTTC+TGG + chr7_3:19756014-19756033 Msa1096070:intron 30.0%
CTTTCATGTTATATACCGAA+AGG - chr7_3:19756170-19756189 None:intergenic 30.0%
! TCATGTTTTCTGAATTCTAG+AGG + chr7_3:19756282-19756301 Msa1096070:intron 30.0%
! CATGTTTTCTGAATTCTAGA+GGG + chr7_3:19756283-19756302 Msa1096070:intron 30.0%
! TTGTTGAAACTTGACTTGAT+AGG + chr7_3:19756537-19756556 Msa1096070:intron 30.0%
TAACGATCTACAAAAGAACA+AGG + chr7_3:19756824-19756843 Msa1096070:CDS 30.0%
ATTTCATCATCTCGATTAAC+CGG - chr7_3:19757086-19757105 None:intergenic 30.0%
AACCTTAAACGCTCTTAAAA+AGG + chr7_3:19757380-19757399 Msa1096070:intron 30.0%
!!! TTCCTTTTTAAGAGCGTTTA+AGG - chr7_3:19757385-19757404 None:intergenic 30.0%
!! GTGTTTTTATGACTCTGATT+TGG + chr7_3:19757509-19757528 Msa1096070:intron 30.0%
TTTATCACGTCTTAATAAGC+AGG - chr7_3:19757741-19757760 None:intergenic 30.0%
GATAAGAATAGTGTTGTGAA+TGG + chr7_3:19757875-19757894 Msa1096070:three_prime_UTR 30.0%
AAGGAGTTAAATTATAGGAG+TGG - chr7_3:19757915-19757934 None:intergenic 30.0%
AAATACACCCCTCATAATAA+AGG - chr7_3:19757934-19757953 None:intergenic 30.0%
!! TATGAGGGGTGTATTTTTAA+AGG + chr7_3:19757938-19757957 Msa1096070:three_prime_UTR 30.0%
!! ATGAGGGGTGTATTTTTAAA+GGG + chr7_3:19757939-19757958 Msa1096070:three_prime_UTR 30.0%
!! AATTTAGATCCTCTAAAGTG+AGG - chr7_3:19758079-19758098 None:intergenic 30.0%
! AATAAAAGGAAGGTACACTT+GGG - chr7_3:19758184-19758203 None:intergenic 30.0%
! AAATAAAAGGAAGGTACACT+TGG - chr7_3:19758185-19758204 None:intergenic 30.0%
CAGCTTACTGATCAAATAAA+AGG - chr7_3:19758198-19758217 None:intergenic 30.0%
!! CTTTTATTTGATCAGTAAGC+TGG + chr7_3:19758196-19758215 Msa1096070:three_prime_UTR 30.0%
TGACAACCCAAAAATTGTAG+AGG - chr7_3:19754164-19754183 None:intergenic 35.0%
AAAGAGGAAAAAACTCACTG+TGG - chr7_3:19754207-19754226 None:intergenic 35.0%
CAAAAGAAGAGAGAGAAAAG+AGG - chr7_3:19754223-19754242 None:intergenic 35.0%
TTGAATTGCTCTACCAAACA+CGG - chr7_3:19754484-19754503 None:intergenic 35.0%
AAGATGCTTCAACATCTCTT+GGG - chr7_3:19754950-19754969 None:intergenic 35.0%
AAAGATGCTTCAACATCTCT+TGG - chr7_3:19754951-19754970 None:intergenic 35.0%
CTTAAGGCAATTGTTGTAGA+CGG - chr7_3:19754983-19755002 None:intergenic 35.0%
AGCTACATGTATATGTTGGA+TGG + chr7_3:19755031-19755050 Msa1096070:intron 35.0%
TGAAGAGAGAGTGATAGTTT+AGG - chr7_3:19755349-19755368 None:intergenic 35.0%
! TACTTTAGGGACCAAATTGA+CGG - chr7_3:19755426-19755445 None:intergenic 35.0%
AATACCAGGGACTAAATTGA+TGG + chr7_3:19755480-19755499 Msa1096070:intron 35.0%
AAATCCATCAATTTAGTCCC+TGG - chr7_3:19755487-19755506 None:intergenic 35.0%
TAGTTCAGGGACTAAATTGA+TGG + chr7_3:19755571-19755590 Msa1096070:intron 35.0%
AGTAGTAATGAAGAACAGTC+TGG + chr7_3:19755791-19755810 Msa1096070:intron 35.0%
!! TGGTATTCTAAGATGTCTCT+TGG - chr7_3:19755934-19755953 None:intergenic 35.0%
! TAACCGTGTCTTTTTCCTTT+CGG + chr7_3:19756152-19756171 Msa1096070:intron 35.0%
ATACCGAAAGGAAAAAGACA+CGG - chr7_3:19756158-19756177 None:intergenic 35.0%
! TTCTGAATTCTAGAGGGAAA+TGG + chr7_3:19756289-19756308 Msa1096070:intron 35.0%
! TGCAGTGTTAAATTTTGCGT+TGG + chr7_3:19756348-19756367 Msa1096070:intron 35.0%
! AGTGTTAAATTTTGCGTTGG+TGG + chr7_3:19756351-19756370 Msa1096070:intron 35.0%
!!! ATTTTGCGTTGGTGGTAAAT+TGG + chr7_3:19756359-19756378 Msa1096070:intron 35.0%
!! ACTCTGATTTTGGTACAAGA+AGG + chr7_3:19756477-19756496 Msa1096070:intron 35.0%
ATGTTCCAAAGTTTGGCAAT+TGG + chr7_3:19756598-19756617 Msa1096070:CDS 35.0%
TGTTCCAAAGTTTGGCAATT+GGG + chr7_3:19756599-19756618 Msa1096070:CDS 35.0%
CAGTTTATTTCGACAAAGCT+CGG + chr7_3:19756646-19756665 Msa1096070:CDS 35.0%
!!! ATCGTTTGGGTTGATCATTT+TGG - chr7_3:19756688-19756707 None:intergenic 35.0%
! ACTAAATCTGGATTTTCCTC+AGG - chr7_3:19756711-19756730 None:intergenic 35.0%
TCCAAAACCAAGAGTTAGTT+CGG + chr7_3:19756764-19756783 Msa1096070:CDS 35.0%
TCGGAGAATCAATCAGAAAA+AGG + chr7_3:19756783-19756802 Msa1096070:CDS 35.0%
ATAACATATGATCTCCCGTT+GGG - chr7_3:19757673-19757692 None:intergenic 35.0%
!! TTCTCATTCTTGGTTTTCCA+GGG + chr7_3:19757787-19757806 Msa1096070:intron 35.0%
GGGATATAAATTCAAGACGA+CGG - chr7_3:19758164-19758183 None:intergenic 35.0%
!! GAGTCTTTGAAATTGTACGG+AGG + chr7_3:19754073-19754092 Msa1096070:five_prime_UTR 40.0%
!!! GAGATTTTTGGTTGGATCAG+AGG - chr7_3:19754122-19754141 None:intergenic 40.0%
! CTTCAGATTGAAAGTGTGTC+TGG + chr7_3:19754381-19754400 Msa1096070:intron 40.0%
TATGAGTTTGTGTCCGTGTT+TGG + chr7_3:19754468-19754487 Msa1096070:intron 40.0%
GAGAAAAAACAAGCAGCTTG+TGG + chr7_3:19754710-19754729 Msa1096070:intron 40.0%
CGTCTACAACAATTGCCTTA+AGG + chr7_3:19754981-19755000 Msa1096070:intron 40.0%
CTGAACTGATGTCATAACAG+AGG + chr7_3:19755067-19755086 Msa1096070:intron 40.0%
TCTCTTAACTCTATCCTGCA+AGG - chr7_3:19755108-19755127 None:intergenic 40.0%
CTTGCTGAAAAGTTAGATCG+AGG + chr7_3:19755128-19755147 Msa1096070:intron 40.0%
! GATTTTGAGCGCCAAATTGA+TGG - chr7_3:19755458-19755477 None:intergenic 40.0%
CGCTCAAAATCTCAATACCA+GGG + chr7_3:19755467-19755486 Msa1096070:intron 40.0%
TTAATCTCGAGGAAAAGGCT+GGG - chr7_3:19755613-19755632 None:intergenic 40.0%
TTTAATCTCGAGGAAAAGGC+TGG - chr7_3:19755614-19755633 None:intergenic 40.0%
CTATTATTTGTTCTCGGCTC+TGG + chr7_3:19755768-19755787 Msa1096070:intron 40.0%
!! TGTCTGTTTCTGGACCAATA+TGG + chr7_3:19756024-19756043 Msa1096070:intron 40.0%
ATAAGCCATTGCAGCCATAT+TGG - chr7_3:19756041-19756060 None:intergenic 40.0%
! GAATTCTAGAGGGAAATGGA+TGG + chr7_3:19756293-19756312 Msa1096070:intron 40.0%
CGTTCTCATGTTCCAAAGTT+TGG + chr7_3:19756591-19756610 Msa1096070:CDS 40.0%
! GATTTTCCTCAGGATCGTTT+GGG - chr7_3:19756701-19756720 None:intergenic 40.0%
!!! GAACTAACTCTTGGTTTTGG+AGG - chr7_3:19756765-19756784 None:intergenic 40.0%
! TCCGAACTAACTCTTGGTTT+TGG - chr7_3:19756768-19756787 None:intergenic 40.0%
TGATTCTCCGAACTAACTCT+TGG - chr7_3:19756774-19756793 None:intergenic 40.0%
CGATCTACAAAAGAACAAGG+AGG + chr7_3:19756827-19756846 Msa1096070:CDS 40.0%
TCTACAAAAGAACAAGGAGG+AGG + chr7_3:19756830-19756849 Msa1096070:CDS 40.0%
CTACAAAAGAACAAGGAGGA+GGG + chr7_3:19756831-19756850 Msa1096070:CDS 40.0%
TAAGCATTCTGTTAACTCGC+CGG + chr7_3:19756860-19756879 Msa1096070:CDS 40.0%
TTTGTCTTGAAGGTCTTCTG+CGG - chr7_3:19756923-19756942 None:intergenic 40.0%
CTAGCAGTACTTTGTCTTGA+AGG - chr7_3:19756933-19756952 None:intergenic 40.0%
TGGTAGAGATAGTCCTTCTT+GGG + chr7_3:19757004-19757023 Msa1096070:CDS 40.0%
AGTACATATGACAGCAGTCA+TGG + chr7_3:19757035-19757054 Msa1096070:CDS 40.0%
ATCAGTTGTAAAGGAACGGA+GGG - chr7_3:19757150-19757169 None:intergenic 40.0%
AATCAGTTGTAAAGGAACGG+AGG - chr7_3:19757151-19757170 None:intergenic 40.0%
! TGTTCCAAAGTTTGGTGAGT+GGG + chr7_3:19757552-19757571 Msa1096070:CDS 40.0%
! CATTTTCAACAAAGTGCGTG+AGG + chr7_3:19757612-19757631 Msa1096070:CDS 40.0%
GATAACATATGATCTCCCGT+TGG - chr7_3:19757674-19757693 None:intergenic 40.0%
!! GAAGTGATGAAGCATCGATA+TGG - chr7_3:19757770-19757789 None:intergenic 40.0%
GCTTCATCACTTCTCATTCT+TGG + chr7_3:19757777-19757796 Msa1096070:intron 40.0%
!! CTTCTCATTCTTGGTTTTCC+AGG + chr7_3:19757786-19757805 Msa1096070:intron 40.0%
TGCGGAATTACAACTGTCAA+CGG + chr7_3:19757967-19757986 Msa1096070:three_prime_UTR 40.0%
ACTTCTGCGATGTTTATCCT+CGG - chr7_3:19758140-19758159 None:intergenic 40.0%
CATAGCAAACTGCGAACAAC+AGG - chr7_3:19755279-19755298 None:intergenic 45.0%
GCGCTCAAAATCTCAATACC+AGG + chr7_3:19755466-19755485 Msa1096070:intron 45.0%
TTAGGGACTAAATCGGTGAG+AGG + chr7_3:19755544-19755563 Msa1096070:intron 45.0%
!! GGTGAGAGGTTGATAGTTCA+GGG + chr7_3:19755558-19755577 Msa1096070:intron 45.0%
CCTTCCCAATTGCCAAACTT+TGG - chr7_3:19756606-19756625 None:intergenic 45.0%
CCAAAGTTTGGCAATTGGGA+AGG + chr7_3:19756603-19756622 Msa1096070:CDS 45.0%
! GGATTTTCCTCAGGATCGTT+TGG - chr7_3:19756702-19756721 None:intergenic 45.0%
CAAGAAGGACTATCTCTACC+AGG - chr7_3:19757005-19757024 None:intergenic 45.0%
CTGGTAGAGATAGTCCTTCT+TGG + chr7_3:19757003-19757022 Msa1096070:CDS 45.0%
AGAGATAGTCCTTCTTGGGA+AGG + chr7_3:19757008-19757027 Msa1096070:CDS 45.0%
GTACTCTTTCCTTCCCAAGA+AGG - chr7_3:19757020-19757039 None:intergenic 45.0%
TCGATTAACCGGTCTCAATC+GGG - chr7_3:19757075-19757094 None:intergenic 45.0%
CTCGATTAACCGGTCTCAAT+CGG - chr7_3:19757076-19757095 None:intergenic 45.0%
! GGAACAGCAGCACTTTTATC+AGG - chr7_3:19757538-19757557 None:intergenic 45.0%
! AGTGCTGCTGTTCCAAAGTT+TGG + chr7_3:19757544-19757563 Msa1096070:CDS 45.0%
! CTGTTCCAAAGTTTGGTGAG+TGG + chr7_3:19757551-19757570 Msa1096070:CDS 45.0%
TCATCCCACTCACCAAACTT+TGG - chr7_3:19757559-19757578 None:intergenic 45.0%
TATAGCCATCAGCAGATGCA+GGG - chr7_3:19757588-19757607 None:intergenic 45.0%
!! TGTCATTCGCAGGTTGGTTT+CGG - chr7_3:19757696-19757715 None:intergenic 45.0%
TAGTGTTGTGAATGGTCGTG+AGG + chr7_3:19757883-19757902 Msa1096070:three_prime_UTR 45.0%
! CACTTTGAAGAGTGAAGTGC+GGG - chr7_3:19758052-19758071 None:intergenic 45.0%
! GCACTTTGAAGAGTGAAGTG+CGG - chr7_3:19758053-19758072 None:intergenic 45.0%
AAGTGCACACCTCACTTTAG+AGG + chr7_3:19758067-19758086 Msa1096070:three_prime_UTR 45.0%
!!! AATATTAAATTTTATATAAC+AGG + chr7_3:19755677-19755696 Msa1096070:intron 5.0%
!!! ATATTAAATTTTATATAACA+GGG + chr7_3:19755678-19755697 Msa1096070:intron 5.0%
!! CGGTGAGAGGTTGATAGTTC+AGG + chr7_3:19755557-19755576 Msa1096070:intron 50.0%
CTGGACCAATATGGCTGCAA+TGG + chr7_3:19756033-19756052 Msa1096070:intron 50.0%
!! TTTTAGCTGACCCCACCATG+CGG + chr7_3:19756196-19756215 Msa1096070:intron 50.0%
!! AAGCCTTATTCCGCATGGTG+GGG - chr7_3:19756209-19756228 None:intergenic 50.0%
!! CAAGCCTTATTCCGCATGGT+GGG - chr7_3:19756210-19756229 None:intergenic 50.0%
!! TCAAGCCTTATTCCGCATGG+TGG - chr7_3:19756211-19756230 None:intergenic 50.0%
!! CCATCAAGCCTTATTCCGCA+TGG - chr7_3:19756214-19756233 None:intergenic 50.0%
CCATGCGGAATAAGGCTTGA+TGG + chr7_3:19756211-19756230 Msa1096070:intron 50.0%
AAAGCTCGGAAAAGTCGACC+TGG + chr7_3:19756660-19756679 Msa1096070:CDS 50.0%
!!! GGGTTGATCATTTTGGAGCC+AGG - chr7_3:19756681-19756700 None:intergenic 50.0%
GATCAACCCAAACGATCCTG+AGG + chr7_3:19756692-19756711 Msa1096070:CDS 50.0%
!! GTTTTAGCCTGGCGATGAAG+AGG - chr7_3:19756981-19757000 None:intergenic 50.0%
!! CTCTACCAGGAGTTTTAGCC+TGG - chr7_3:19756992-19757011 None:intergenic 50.0%
TGGAAGATCCCGATTGAGAC+CGG + chr7_3:19757064-19757083 Msa1096070:CDS 50.0%
! GAGGGAGTACGTGATAGAAC+AGG - chr7_3:19757132-19757151 None:intergenic 50.0%
GTATAGCCATCAGCAGATGC+AGG - chr7_3:19757589-19757608 None:intergenic 50.0%
! GAGCTTTGTCATTCGCAGGT+TGG - chr7_3:19757702-19757721 None:intergenic 50.0%
ACCTGCGAATGACAAAGCTC+AGG + chr7_3:19757702-19757721 Msa1096070:CDS 50.0%
! ACCTGAGCTTTGTCATTCGC+AGG - chr7_3:19757706-19757725 None:intergenic 50.0%
!!! TCCAGGGTTGCTGCTTTTTC+TGG + chr7_3:19757803-19757822 Msa1096070:intron 50.0%
!!! CCAGGGTTGCTGCTTTTTCT+GGG + chr7_3:19757804-19757823 Msa1096070:intron 50.0%
!!! CAGGGTTGCTGCTTTTTCTG+GGG + chr7_3:19757805-19757824 Msa1096070:intron 50.0%
! TTTAAGGCTCTCTCTGTCCG+AGG + chr7_3:19758120-19758139 Msa1096070:three_prime_UTR 50.0%
TGACCCCACCATGCGGAATA+AGG + chr7_3:19756203-19756222 Msa1096070:intron 55.0%
GAACCTACTCCATGACCTCC+AGG - chr7_3:19756891-19756910 None:intergenic 55.0%
ACGTTCACCTCTTCATCGCC+AGG + chr7_3:19756971-19756990 Msa1096070:CDS 55.0%
CATCGCCAGGCTAAAACTCC+TGG + chr7_3:19756984-19757003 Msa1096070:CDS 55.0%
GACAGCAGTCATGGTACACC+TGG + chr7_3:19757044-19757063 Msa1096070:CDS 55.0%
GGTCTCAATCGGGATCTTCC+AGG - chr7_3:19757065-19757084 None:intergenic 55.0%
AGTGACCCTGCATCTGCTGA+TGG + chr7_3:19757580-19757599 Msa1096070:CDS 55.0%
AATGCACCAGGCACACCCAA+CGG + chr7_3:19757655-19757674 Msa1096070:CDS 55.0%
CCCAGAAAAAGCAGCAACCC+TGG - chr7_3:19757807-19757826 None:intergenic 55.0%
CGTCCTGGAGGTCATGGAGT+AGG + chr7_3:19756885-19756904 Msa1096070:CDS 60.0%
! GCGTGAGGAGAAGCACGTTG+CGG + chr7_3:19757627-19757646 Msa1096070:CDS 60.0%
GTTGCGGCTGGAAATGCACC+AGG + chr7_3:19757643-19757662 Msa1096070:CDS 60.0%
ATGCACCAGGCACACCCAAC+GGG + chr7_3:19757656-19757675 Msa1096070:CDS 60.0%
!! GTTAACTCGCCGGCTCGTCC+TGG + chr7_3:19756870-19756889 Msa1096070:CDS 65.0%
CCATGACCTCCAGGACGAGC+CGG - chr7_3:19756882-19756901 None:intergenic 65.0%
! GAGGAGAAGCACGTTGCGGC+TGG + chr7_3:19757631-19757650 Msa1096070:CDS 65.0%
GATCTCCCGTTGGGTGTGCC+TGG - chr7_3:19757664-19757683 None:intergenic 65.0%
!! AACTCGCCGGCTCGTCCTGG+AGG + chr7_3:19756873-19756892 Msa1096070:CDS 70.0%
! CCGGCTCGTCCTGGAGGTCA+TGG + chr7_3:19756879-19756898 Msa1096070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 19754039 19758361 19754039 ID=Msa1096070;Name=Msa1096070
chr7_3 mRNA 19754039 19758361 19754039 ID=Msa1096070-mRNA-1;Parent=Msa1096070;Name=Msa1096070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=161|0.66|0.75|1|0.66|0.5|4|524|241
chr7_3 exon 19754039 19754208 19754039 ID=Msa1096070-mRNA-1:exon:4259;Parent=Msa1096070-mRNA-1
chr7_3 exon 19756588 19757085 19756588 ID=Msa1096070-mRNA-1:exon:4260;Parent=Msa1096070-mRNA-1
chr7_3 exon 19757535 19757723 19757535 ID=Msa1096070-mRNA-1:exon:4261;Parent=Msa1096070-mRNA-1
chr7_3 exon 19757808 19758361 19757808 ID=Msa1096070-mRNA-1:exon:4262;Parent=Msa1096070-mRNA-1
chr7_3 five_prime_UTR 19754039 19754199 19754039 ID=Msa1096070-mRNA-1:five_prime_utr;Parent=Msa1096070-mRNA-1
chr7_3 CDS 19754200 19754208 19754200 ID=Msa1096070-mRNA-1:cds;Parent=Msa1096070-mRNA-1
chr7_3 CDS 19756588 19757085 19756588 ID=Msa1096070-mRNA-1:cds;Parent=Msa1096070-mRNA-1
chr7_3 CDS 19757535 19757723 19757535 ID=Msa1096070-mRNA-1:cds;Parent=Msa1096070-mRNA-1
chr7_3 CDS 19757808 19757837 19757808 ID=Msa1096070-mRNA-1:cds;Parent=Msa1096070-mRNA-1
chr7_3 three_prime_UTR 19757838 19758361 19757838 ID=Msa1096070-mRNA-1:three_prime_utr;Parent=Msa1096070-mRNA-1
Gene Sequence

>Msa1096070

ATGACCACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGAAGGCGAAGATGATGTTCCTTATACAGTTTATTTCGACAAAGCTCGGAAAAGTCGACCTGGCTCCAAAATGATCAACCCAAACGATCCTGAGGAAAATCCAGATTTAGTTCTTCAAAATTCATCTTCTGATGACGTAATTCCTCCAAAACCAAGAGTTAGTTCGGAGAATCAATCAGAAAAAGGAACAGTGAGACTAGCACATAACGATCTACAAAAGAACAAGGAGGAGGGTGATGTTAAGCATTCTGTTAACTCGCCGGCTCGTCCTGGAGGTCATGGAGTAGGTTCTGCTGATAGCCGCAGAAGACCTTCAAGACAAAGTACTGCTAGCTCAGAGTACAGTGTTGAACGTTCACCTCTTCATCGCCAGGCTAAAACTCCTGGTAGAGATAGTCCTTCTTGGGAAGGAAAGAGTACATATGACAGCAGTCATGGTACACCTGGAAGATCCCGATTGAGACCGCCTGATAAAAGTGCTGCTGTTCCAAAGTTTGGTGAGTGGGATGAGAGTGACCCTGCATCTGCTGATGGCTATACTCACATTTTCAACAAAGTGCGTGAGGAGAAGCACGTTGCGGCTGGAAATGCACCAGGCACACCCAACGGGAGATCATATGTTATCCGAAACCAACCTGCGAATGACAAAGCTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGA

Protein sequence

>Msa1096070

MTTQRSHVPKFGNWEGEDDVPYTVYFDKARKSRPGSKMINPNDPEENPDLVLQNSSSDDVIPPKPRVSSENQSEKGTVRLAHNDLQKNKEEGDVKHSVNSPARPGGHGVGSADSRRRPSRQSTASSEYSVERSPLHRQAKTPGRDSPSWEGKSTYDSSHGTPGRSRLRPPDKSAAVPKFGEWDESDPASADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKAQGCCFFWGRK*