AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746170 MtrunA17_Chr5g0428621 98.337 481 8 0 1 481 1 481 0.0 975
Msa0746170 MtrunA17_Chr7g0245321 62.222 450 127 8 38 481 14 426 0.0 516
Msa0746170 MtrunA17_Chr3g0128531 72.297 296 81 1 186 480 57 352 4.97e-154 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746170 AT5G01960.1 62.443 442 121 9 45 481 25 426 0.0 537

Find 153 sgRNAs with CRISPR-Local

Find 577 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTAATTGCTAATTT+TGG 0.071152 5_1:-68216275 None:intergenic
CTCCTAACCCAACACCTTTC+TGG 0.136413 5_1:+68218274 Msa0746170:CDS
TATACAAACTTCAAAGAAAT+TGG 0.149391 5_1:-68224396 None:intergenic
AACTCATGATGTACAAATTA+AGG 0.154216 5_1:+68224259 Msa0746170:three_prime_UTR
ATTGTCAACAACGGAGTTTC+TGG 0.171090 5_1:+68216611 Msa0746170:CDS
AAGGAAGGAATTATGGAAAT+TGG 0.173609 5_1:-68216060 None:intergenic
GATGCTGGTGGTGCTGTTGC+TGG 0.216559 5_1:+68216656 Msa0746170:CDS
CCTTCTTATATATTACAAAA+AGG 0.220636 5_1:+68220023 Msa0746170:CDS
CAGGTTTCTTTGTCACAATT+TGG 0.224870 5_1:+68217961 Msa0746170:intron
AAGTGGAAGATCAAAGAAAT+AGG 0.254643 5_1:+68216297 Msa0746170:five_prime_UTR
AAACGAAATCGGTGACAAAA+AGG 0.259302 5_1:-68216537 None:intergenic
AGCGATTAAGGAAGGAATTA+TGG 0.268224 5_1:-68216067 None:intergenic
GCTTATGGATTAAGCGATTA+AGG 0.274026 5_1:-68216079 None:intergenic
ATAGGTTACCTGAGAGCTTA+TGG 0.282402 5_1:-68216094 None:intergenic
GAAGTTGCAATAAGGATTAT+TGG 0.287712 5_1:+68216692 Msa0746170:CDS
TTCATGTGATATGCATTTAC+TGG 0.295179 5_1:+68218208 Msa0746170:CDS
AGAGTGAAGAATTGAGGATT+AGG 0.296016 5_1:+68216352 Msa0746170:five_prime_UTR
AGGAAGGAATTATGGAAATT+GGG 0.305560 5_1:-68216059 None:intergenic
GCATCGTCGTCATCATCTTT+TGG 0.311148 5_1:+68216449 Msa0746170:CDS
GAGTGAAGAATTGAGGATTA+GGG 0.329208 5_1:+68216353 Msa0746170:five_prime_UTR
TGTTTGCAGCGCAACAAGAT+AGG 0.343260 5_1:-68221534 None:intergenic
GCAGCTGATCTTCGCACCTT+TGG 0.351910 5_1:+68224197 Msa0746170:CDS
GGAATGGAACAGAAAATAAC+AGG 0.357993 5_1:+68216927 Msa0746170:CDS
CTTTCTTGATAATGCTTTCA+AGG 0.360532 5_1:-68220433 None:intergenic
TTCATCTTCTTCGTCGTCGC+TGG 0.362832 5_1:+68216871 Msa0746170:CDS
GATGATGAAAAGTCAGAATC+AGG 0.365247 5_1:-68215990 None:intergenic
GATTGTGGTGAGGAGCTTAT+TGG 0.382139 5_1:+68216761 Msa0746170:CDS
GCTGTTGCTGGGAGTAGTGC+AGG 0.386572 5_1:+68216668 Msa0746170:CDS
CGGAGAGAATATTCATAATC+AGG 0.390914 5_1:+68216718 Msa0746170:CDS
ACTCATGATGTACAAATTAA+GGG 0.395875 5_1:+68224260 Msa0746170:three_prime_UTR
TCAAGAAAGGAAGTTCATTA+CGG 0.399518 5_1:+68220447 Msa0746170:CDS
CAGGTTGATGGTGAGGCTGC+TGG 0.403813 5_1:+68216905 Msa0746170:CDS
AGAATATTCATAATCAGGTT+GGG 0.404440 5_1:+68216723 Msa0746170:CDS
CAAGAAAGGAAGTTCATTAC+GGG 0.406319 5_1:+68220448 Msa0746170:CDS
TGTGTTAAAGATGGAAACTT+TGG 0.413389 5_1:+68216391 Msa0746170:exon
TAAGAAGCAGACAGCTTTGA+AGG 0.417319 5_1:+68218019 Msa0746170:CDS
CATGAGTTGATTAAAACAAC+TGG 0.418322 5_1:-68224244 None:intergenic
ATGCTGGTGGTGCTGTTGCT+GGG 0.418694 5_1:+68216657 Msa0746170:CDS
GTGCAGGGGAAGTTGCAATA+AGG 0.423075 5_1:+68216684 Msa0746170:CDS
TTGCTGAGATACTCAAAATC+GGG 0.423104 5_1:+68224285 Msa0746170:three_prime_UTR
CATAATCAGGTTGGGGAAGT+AGG 0.423930 5_1:+68216731 Msa0746170:CDS
AGGAAAGTCTCTTTACTTGC+TGG 0.427377 5_1:+68218165 Msa0746170:CDS
TGGTTCGGAGTTACGATCTC+AGG 0.429413 5_1:+68216631 Msa0746170:CDS
GCATGCAATATTCACGATCT+TGG 0.434284 5_1:+68218296 Msa0746170:CDS
TATTCAGGTTTGAGAGAGAA+AGG 0.435355 5_1:+68224144 Msa0746170:intron
GGTCTATGCCACAGCAGAAC+AGG 0.437050 5_1:+68220470 Msa0746170:CDS
CGCTTAATCCATAAGCTCTC+AGG 0.441894 5_1:+68216086 Msa0746170:five_prime_UTR
TCTTCTTCGTCGTCGCTGGC+TGG 0.443041 5_1:+68216875 Msa0746170:CDS
ATACAAACTTCAAAGAAATT+GGG 0.447841 5_1:-68224395 None:intergenic
ATTAGCAATTAGTTGAAAAG+TGG 0.448955 5_1:+68216280 Msa0746170:five_prime_UTR
GCTGGTAGTGGACAGGTTGA+TGG 0.451925 5_1:+68216893 Msa0746170:CDS
TTTGCTGAGATACTCAAAAT+CGG 0.452012 5_1:+68224284 Msa0746170:three_prime_UTR
GAGAATGATGCCGAGGGTCG+TGG 0.454511 5_1:+68216812 Msa0746170:CDS
GATGGTGAGGCTGCTGGGAA+TGG 0.455118 5_1:+68216911 Msa0746170:CDS
TCGTCGTCGCTGGCTGGTAG+TGG 0.456677 5_1:+68216881 Msa0746170:CDS
ACCAACAACAAAAGCGAGAA+AGG 0.457541 5_1:-68217013 None:intergenic
GATCTTCGCACCTTTGGAGA+TGG 0.465492 5_1:+68224203 Msa0746170:CDS
TGCCAGAAAGGTGTTGGGTT+AGG 0.468923 5_1:-68218276 None:intergenic
GGAAGGAATTATGGAAATTG+GGG 0.469339 5_1:-68216058 None:intergenic
TTCATTCGACAGCATTTACA+AGG 0.471120 5_1:+68217040 Msa0746170:CDS
GAGAATATTCATAATCAGGT+TGG 0.471723 5_1:+68216722 Msa0746170:CDS
TTTAACCAATGCTCTGCATA+GGG 0.474317 5_1:-68224174 None:intergenic
AGTGGAAGATCAAAGAAATA+GGG 0.481606 5_1:+68216298 Msa0746170:five_prime_UTR
GTGTTAAAGATGGAAACTTT+GGG 0.485192 5_1:+68216392 Msa0746170:exon
CAACAACGGAGTTTCTGGTT+CGG 0.487455 5_1:+68216616 Msa0746170:CDS
ACACGCTCAACACTCTCAAA+AGG 0.487468 5_1:+68215948 Msa0746170:five_prime_UTR
GTCGCTGGCTGGTAGTGGAC+AGG 0.489319 5_1:+68216886 Msa0746170:CDS
GAATCAGGGAGCTGAAAACT+TGG 0.490952 5_1:-68215975 None:intergenic
CTTGAAAGCATTATCAAGAA+AGG 0.491166 5_1:+68220434 Msa0746170:CDS
TAGGGGAATGCATCTTCTCT+TGG 0.502312 5_1:-68221515 None:intergenic
CTCAATTCCACCACGACCCT+CGG 0.503303 5_1:-68216822 None:intergenic
TCTATTATATGAGGAATATG+AGG 0.505165 5_1:-68224320 None:intergenic
AATGTTGGTGTAACTTGGTA+TGG 0.506979 5_1:+68216494 Msa0746170:CDS
AGGTTGATGGTGAGGCTGCT+GGG 0.510435 5_1:+68216906 Msa0746170:CDS
ATCATACTATCTATTATATG+AGG 0.510800 5_1:-68224329 None:intergenic
CCTTGTTGCCAACACCAGTC+TGG 0.511066 5_1:+68220202 Msa0746170:CDS
CTTTAACCAATGCTCTGCAT+AGG 0.512609 5_1:-68224175 None:intergenic
TGCCAACACCAGTCTGGTAC+CGG 0.512850 5_1:+68220208 Msa0746170:CDS
ATTGCATGCCAGAAAGGTGT+TGG 0.514467 5_1:-68218282 None:intergenic
GTGAATATTGCATGCCAGAA+AGG 0.515806 5_1:-68218288 None:intergenic
ATGAGGAATATGAGGTTAGC+GGG 0.516794 5_1:-68224312 None:intergenic
GAGAAGTGGAATGCCTGGAT+TGG 0.516962 5_1:+68216787 Msa0746170:CDS
AGGTCATAATTTCCGTCGAC+AGG 0.520503 5_1:+68220050 Msa0746170:CDS
TTGCATGCCAGAAAGGTGTT+GGG 0.523282 5_1:-68218281 None:intergenic
GTTTGCAGCGCAACAAGATA+GGG 0.523423 5_1:-68221533 None:intergenic
GCATCATTCTCACCCAATCC+AGG 0.524005 5_1:-68216800 None:intergenic
ATTAATTAAGTTGTTCCACT+TGG 0.525389 5_1:+68224447 Msa0746170:three_prime_UTR
AGGGTTAGAGTGAAGAATTG+AGG 0.526874 5_1:+68216346 Msa0746170:intron
GAGCTTATTGGTGAGAGAAG+TGG 0.528069 5_1:+68216773 Msa0746170:CDS
CAGAAAGGTGTTGGGTTAGG+AGG 0.529451 5_1:-68218273 None:intergenic
CGAGGGTCGTGGTGGAATTG+AGG 0.530269 5_1:+68216823 Msa0746170:CDS
TTACGATCTCAGGTTGATGC+TGG 0.530975 5_1:+68216641 Msa0746170:CDS
CTGATTATGAATATTCTCTC+CGG 0.531233 5_1:-68216717 None:intergenic
CTGTTGCTGGGAGTAGTGCA+GGG 0.533694 5_1:+68216669 Msa0746170:CDS
AGAAGTGGAATGCCTGGATT+GGG 0.538975 5_1:+68216788 Msa0746170:CDS
ATATTCACGATCTTGGTCAA+TGG 0.547880 5_1:+68218303 Msa0746170:CDS
CCAGACTGGTGTTGGCAACA+AGG 0.550659 5_1:-68220202 None:intergenic
GCTAACATCTGTGGTTGAGA+AGG 0.553972 5_1:+68220299 Msa0746170:CDS
AACCGGTACCAGACTGGTGT+TGG 0.555615 5_1:-68220210 None:intergenic
ATTGATGCGGCAAGTTGCAA+TGG 0.559389 5_1:+68219987 Msa0746170:CDS
GCAATAAGGATTATTGGAGC+CGG 0.561386 5_1:+68216698 Msa0746170:CDS
GGTGAGAGAAGTGGAATGCC+TGG 0.561452 5_1:+68216782 Msa0746170:CDS
GTGTAACTTGGTATGGAATG+AGG 0.561851 5_1:+68216501 Msa0746170:CDS
CGTTCGAGTAATGATTCTGA+GGG 0.563268 5_1:+68216584 Msa0746170:CDS
AACTTTCAAGCTAACATCTG+TGG 0.566297 5_1:+68220290 Msa0746170:CDS
ATAACAATGTTGGTGTAACT+TGG 0.566832 5_1:+68216489 Msa0746170:CDS
GAATATTCATAATCAGGTTG+GGG 0.568125 5_1:+68216724 Msa0746170:CDS
TCAAGGCAGAAATAAAGCAT+TGG 0.568202 5_1:-68220416 None:intergenic
TATGAGGAATATGAGGTTAG+CGG 0.572912 5_1:-68224313 None:intergenic
ATGGATTAAGCGATTAAGGA+AGG 0.573096 5_1:-68216075 None:intergenic
TAACCAATGCTCTGCATAGG+GGG 0.573244 5_1:-68224172 None:intergenic
GCGTTCGAGTAATGATTCTG+AGG 0.573260 5_1:+68216583 Msa0746170:CDS
AAGAATCTGCTCGATCCACT+TGG 0.579271 5_1:-68216990 None:intergenic
GAAACACAGGTTACTGCTGC+CGG 0.586657 5_1:+68221474 Msa0746170:intron
TCAGAGATATGATATTCAGC+TGG 0.589785 5_1:+68216964 Msa0746170:CDS
GTGGAATTGAGGCTAGTGAA+GGG 0.589870 5_1:+68216834 Msa0746170:CDS
TGCTGAGATACTCAAAATCG+GGG 0.592550 5_1:+68224286 Msa0746170:three_prime_UTR
GCATATAGCACATAGGTCAC+CGG 0.609774 5_1:-68221493 None:intergenic
GAAGAAGATGAAGACACAAG+AGG 0.611695 5_1:-68216860 None:intergenic
AATTATTACCTGTTCTGCTG+TGG 0.619122 5_1:-68220478 None:intergenic
CGATCTCAGGTTGATGCTGG+TGG 0.621120 5_1:+68216644 Msa0746170:CDS
AATTTGAAGTGAATTAACAA+TGG 0.624039 5_1:-68216014 None:intergenic
GGTGGAATTGAGGCTAGTGA+AGG 0.624331 5_1:+68216833 Msa0746170:CDS
ATGATGAAAAGTCAGAATCA+GGG 0.624666 5_1:-68215989 None:intergenic
TCTCTTGGCATATAGCACAT+AGG 0.625613 5_1:-68221500 None:intergenic
GACTATCAGATATATTGATG+CGG 0.630026 5_1:+68219974 Msa0746170:intron
TAGTGGACAGGTTGATGGTG+AGG 0.631621 5_1:+68216898 Msa0746170:CDS
TGTTGGGTTAGGAGGTAACA+TGG 0.635457 5_1:-68218265 None:intergenic
ATGTGATATGCATTTACTGG+TGG 0.637599 5_1:+68218211 Msa0746170:CDS
TTTGCAGCGCAACAAGATAG+GGG 0.638343 5_1:-68221532 None:intergenic
ACTTGTTGATCCATCTCCAA+AGG 0.640923 5_1:-68224213 None:intergenic
AATACTGATGATAACAATGT+TGG 0.646042 5_1:+68216479 Msa0746170:CDS
AAGTGTTAATCACCTGTCGA+CGG 0.651807 5_1:-68220062 None:intergenic
TTAGGAGGTAACATGGCCAG+TGG 0.655245 5_1:-68218258 None:intergenic
GCAATTTCAGCACTTCCAAG+TGG 0.655394 5_1:-68224462 None:intergenic
GCGAAGATTGTGTTTCTGAG+TGG 0.661411 5_1:+68221565 Msa0746170:CDS
GACGATGCTGATGATAATGA+TGG 0.665344 5_1:-68216434 None:intergenic
TGGAATTGAGGCTAGTGAAG+GGG 0.668643 5_1:+68216835 Msa0746170:CDS
TTAACCAATGCTCTGCATAG+GGG 0.669529 5_1:-68224173 None:intergenic
AGGTTATGATGATTGTGGTG+AGG 0.674430 5_1:+68216751 Msa0746170:CDS
GAGTGTTGAGCGTGTGAATG+CGG 0.674483 5_1:-68215940 None:intergenic
AATGATGCCGAGGGTCGTGG+TGG 0.676790 5_1:+68216815 Msa0746170:CDS
TGTTGCTGGGAGTAGTGCAG+GGG 0.681680 5_1:+68216670 Msa0746170:CDS
ATATTCAGCTGGTTGCCAAG+TGG 0.681905 5_1:+68216975 Msa0746170:CDS
TTGGGTGAGAATGATGCCGA+GGG 0.685926 5_1:+68216806 Msa0746170:CDS
GCTGAGATACTCAAAATCGG+GGG 0.694163 5_1:+68224287 Msa0746170:three_prime_UTR
ATTGGGTGAGAATGATGCCG+AGG 0.696716 5_1:+68216805 Msa0746170:CDS
GAAGTAGGTTATGATGATTG+TGG 0.698058 5_1:+68216746 Msa0746170:CDS
TTAAAGATGGAAACTTTGGG+TGG 0.712597 5_1:+68216395 Msa0746170:exon
GAAAGTTAAATACAACCCTG+TGG 0.717765 5_1:-68220274 None:intergenic
GAATGGAACAGAAAATAACA+GGG 0.719617 5_1:+68216928 Msa0746170:CDS
AAGAAAGGAAGTTCATTACG+GGG 0.731505 5_1:+68220449 Msa0746170:CDS
GAGGGTATGATTGTCAACAA+CGG 0.747863 5_1:+68216602 Msa0746170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAAAAAAAAAATTA+GGG - chr5_1:68216243-68216262 None:intergenic 0.0%
!! AATATTAAAAAAAAAAAATT+AGG - chr5_1:68216244-68216263 None:intergenic 0.0%
!!! TTTAAGAATAGAAATTTTAA+AGG - chr5_1:68218069-68218088 None:intergenic 10.0%
!! ATGAAATAGTAAATAATTAA+AGG + chr5_1:68221942-68221961 Msa0746170:intron 10.0%
!!! AATAATTATTATTTTGTTTG+TGG + chr5_1:68222070-68222089 Msa0746170:intron 10.0%
!!! ATAATTATTATTTTGTTTGT+GGG + chr5_1:68222071-68222090 Msa0746170:intron 10.0%
!!! AAACTATTTTTCTAAAATAA+TGG + chr5_1:68223550-68223569 Msa0746170:intron 10.0%
!! ATAGAATTGAAAAAATTGAA+GGG - chr5_1:68216133-68216152 None:intergenic 15.0%
!! AATAGAATTGAAAAAATTGA+AGG - chr5_1:68216134-68216153 None:intergenic 15.0%
!! AAATAAAGGAAAATTCAAAA+TGG - chr5_1:68217170-68217189 None:intergenic 15.0%
!!! TTTGTATTTTCTTGATATTT+GGG - chr5_1:68217223-68217242 None:intergenic 15.0%
!!! AATATACTGTATTTTTATCT+TGG + chr5_1:68219857-68219876 Msa0746170:intron 15.0%
!! CTTCTTATATATTACAAAAA+GGG + chr5_1:68220024-68220043 Msa0746170:CDS 15.0%
!! TTCTTATATATTACAAAAAG+GGG + chr5_1:68220025-68220044 Msa0746170:CDS 15.0%
!! TTAATATTATAGAAATCGAA+TGG - chr5_1:68220546-68220565 None:intergenic 15.0%
!!! TTTTATAGTTACACAAATTA+TGG + chr5_1:68220948-68220967 Msa0746170:intron 15.0%
!!! TAAATAATTAAAGGTATGAT+AGG + chr5_1:68221951-68221970 Msa0746170:intron 15.0%
!! TTAGAAGTAATAAAATTGAT+CGG + chr5_1:68221993-68222012 Msa0746170:intron 15.0%
!! ATGTATAATAAGCAAATATA+TGG - chr5_1:68222138-68222157 None:intergenic 15.0%
!! ATATTTGCTTATTATACATT+TGG + chr5_1:68222139-68222158 Msa0746170:intron 15.0%
!! GTAATCATATTAAGTATTAA+CGG + chr5_1:68222371-68222390 Msa0746170:intron 15.0%
!! TTTAATATCAAATGTAAGAA+TGG + chr5_1:68222415-68222434 Msa0746170:intron 15.0%
!! AATTCTTAAATTAAGATTCT+TGG + chr5_1:68222697-68222716 Msa0746170:intron 15.0%
!!! GTTTTTAAGCAAAATAAATT+GGG - chr5_1:68222904-68222923 None:intergenic 15.0%
!!! AGTTTTTAAGCAAAATAAAT+TGG - chr5_1:68222905-68222924 None:intergenic 15.0%
!!! TATTTCCAGTTTTAATTAAA+TGG - chr5_1:68222937-68222956 None:intergenic 15.0%
!!! ATTTTTCTAAAATAATGGTT+TGG + chr5_1:68223555-68223574 Msa0746170:intron 15.0%
!! TCCAAATTTCTTATAAAAAT+AGG - chr5_1:68224487-68224506 None:intergenic 15.0%
!!! TTTTATAAGAAATTTGGATT+TGG + chr5_1:68224489-68224508 Msa0746170:three_prime_UTR 15.0%
!!! AATTTGAAGTGAATTAACAA+TGG - chr5_1:68216017-68216036 None:intergenic 20.0%
!!! TTCAACTAATTGCTAATTTT+GGG - chr5_1:68216277-68216296 None:intergenic 20.0%
!!! TTTCAACTAATTGCTAATTT+TGG - chr5_1:68216278-68216297 None:intergenic 20.0%
!!! TTTTTAGTTTGTGTTAAAGA+TGG + chr5_1:68216382-68216401 Msa0746170:exon 20.0%
!! TATGATCATTATGATCATAT+TGG - chr5_1:68217146-68217165 None:intergenic 20.0%
!! AACAATGGAAAAGTAAATAA+AGG - chr5_1:68217184-68217203 None:intergenic 20.0%
!!! CTTTGTATTTTCTTGATATT+TGG - chr5_1:68217224-68217243 None:intergenic 20.0%
!!! GAATAGAAATTTTAAAGGTT+TGG - chr5_1:68218064-68218083 None:intergenic 20.0%
!!! TGAAATATGTTTTATTTTGC+AGG + chr5_1:68218137-68218156 Msa0746170:intron 20.0%
!!! GAAATATGTTTTATTTTGCA+GGG + chr5_1:68218138-68218157 Msa0746170:intron 20.0%
!! TCCAAGTTTAATTATCAATT+GGG + chr5_1:68218949-68218968 Msa0746170:intron 20.0%
!!! TTTTTTTAAAGATGTTGTGA+AGG - chr5_1:68219160-68219179 None:intergenic 20.0%
!!! TCAAAAACCTATGTTTTTTA+AGG - chr5_1:68219593-68219612 None:intergenic 20.0%
!! CTATTAGAATCAACTAAAAA+AGG + chr5_1:68219727-68219746 Msa0746170:intron 20.0%
!! AATACCAACAAAAATTAGAA+TGG - chr5_1:68219936-68219955 None:intergenic 20.0%
!! ATATCTGATAGTCAATATAA+TGG - chr5_1:68219967-68219986 None:intergenic 20.0%
!!! CCTTTTTGTAATATATAAGA+AGG - chr5_1:68220026-68220045 None:intergenic 20.0%
!! CCTTCTTATATATTACAAAA+AGG + chr5_1:68220023-68220042 Msa0746170:CDS 20.0%
!! GATATATTTATATACACTGT+TGG - chr5_1:68220524-68220543 None:intergenic 20.0%
!! TATTATCCTCAAAATTAGAT+AGG + chr5_1:68221156-68221175 Msa0746170:intron 20.0%
!!! TATTTTCCTATCTAATTTTG+AGG - chr5_1:68221165-68221184 None:intergenic 20.0%
!!! AATTTTATGTATTGAAACAC+AGG + chr5_1:68221461-68221480 Msa0746170:intron 20.0%
!!! CCTTTTTAGTAATTGTTTTA+AGG - chr5_1:68222041-68222060 None:intergenic 20.0%
!! CCTTAAAACAATTACTAAAA+AGG + chr5_1:68222038-68222057 Msa0746170:intron 20.0%
!! TTTGGATATTTATTTATGCT+TGG + chr5_1:68222157-68222176 Msa0746170:intron 20.0%
!! ATTACATATTATGCAAAGAA+AGG - chr5_1:68222356-68222375 None:intergenic 20.0%
!! TTTAATATTCATAGCAAACA+TGG + chr5_1:68222666-68222685 Msa0746170:intron 20.0%
!!! TTTGTTAGAAGGATTATTTT+CGG - chr5_1:68222726-68222745 None:intergenic 20.0%
!!! AATCAAATTTTAATAGCTTG+AGG - chr5_1:68223672-68223691 None:intergenic 20.0%
!! ATCATACTATCTATTATATG+AGG - chr5_1:68224332-68224351 None:intergenic 20.0%
!! ATACAAACTTCAAAGAAATT+GGG - chr5_1:68224398-68224417 None:intergenic 20.0%
!! TATACAAACTTCAAAGAAAT+TGG - chr5_1:68224399-68224418 None:intergenic 20.0%
!!! GCCTATTTTTATAAGAAATT+TGG + chr5_1:68224483-68224502 Msa0746170:three_prime_UTR 20.0%
! ATTGGGGAAAATGAAAAATA+GGG - chr5_1:68216045-68216064 None:intergenic 25.0%
! AATTGGGGAAAATGAAAAAT+AGG - chr5_1:68216046-68216065 None:intergenic 25.0%
!! TCAACTAATTGCTAATTTTG+GGG - chr5_1:68216276-68216295 None:intergenic 25.0%
! ATTAGCAATTAGTTGAAAAG+TGG + chr5_1:68216280-68216299 Msa0746170:five_prime_UTR 25.0%
! AATACTGATGATAACAATGT+TGG + chr5_1:68216479-68216498 Msa0746170:CDS 25.0%
! TAATCCAACAAAAACGAAAT+CGG - chr5_1:68216551-68216570 None:intergenic 25.0%
! AGAATATTCATAATCAGGTT+GGG + chr5_1:68216723-68216742 Msa0746170:CDS 25.0%
!! TTTTCTTGATATTTGGGAAA+TGG - chr5_1:68217217-68217236 None:intergenic 25.0%
!!! CAAAGTTGTTTTTGATAACT+TGG + chr5_1:68217239-68217258 Msa0746170:intron 25.0%
!! TCATCATGTATAAGTTTGTT+TGG + chr5_1:68217393-68217412 Msa0746170:intron 25.0%
! TCAATGAAAAACATTCAACA+AGG - chr5_1:68217435-68217454 None:intergenic 25.0%
!! AAGTTGCAATTTTCTTACTA+AGG - chr5_1:68217649-68217668 None:intergenic 25.0%
! TAAGGTAAAAATGAATCTTG+TGG + chr5_1:68217678-68217697 Msa0746170:intron 25.0%
!! ATTATTTTCTCCACATTATC+TGG + chr5_1:68217918-68217937 Msa0746170:intron 25.0%
!! TGATGATATTTTATATCCAC+TGG + chr5_1:68218242-68218261 Msa0746170:CDS 25.0%
! TTTGTTTGTTCTACTTTACA+TGG + chr5_1:68218386-68218405 Msa0746170:intron 25.0%
!!! TGTACAATTTTTGCTTTGTT+TGG + chr5_1:68218431-68218450 Msa0746170:intron 25.0%
!! AACTTGGAGAATACATTTTA+CGG - chr5_1:68218937-68218956 None:intergenic 25.0%
! CTCCAAGTTTAATTATCAAT+TGG + chr5_1:68218948-68218967 Msa0746170:intron 25.0%
!! TCCCAATTGATAATTAAACT+TGG - chr5_1:68218953-68218972 None:intergenic 25.0%
! TTAACTTTATCCTCAAACAA+TGG - chr5_1:68218988-68219007 None:intergenic 25.0%
! TTTACACGTCTAAGAAAAAT+TGG + chr5_1:68219060-68219079 Msa0746170:intron 25.0%
! TTACACGTCTAAGAAAAATT+GGG + chr5_1:68219061-68219080 Msa0746170:intron 25.0%
! ATATTATTTCACATTGGCAA+TGG + chr5_1:68219097-68219116 Msa0746170:intron 25.0%
! ACAAACATTGAAGCAAATAA+GGG - chr5_1:68219367-68219386 None:intergenic 25.0%
! ATTAGTATTCCCTCTTAAAT+TGG - chr5_1:68219633-68219652 None:intergenic 25.0%
!! AGTTGATTCTAATAGCTAAA+AGG - chr5_1:68219722-68219741 None:intergenic 25.0%
! AATCAACTAAAAAAGGAAAC+TGG + chr5_1:68219734-68219753 Msa0746170:intron 25.0%
! ATCAACTAAAAAAGGAAACT+GGG + chr5_1:68219735-68219754 Msa0746170:intron 25.0%
! AAACAAAATGAGATCAAGAA+AGG - chr5_1:68219833-68219852 None:intergenic 25.0%
! ACAAAAATTAGAATGGCAAA+AGG - chr5_1:68219929-68219948 None:intergenic 25.0%
!! TTTGCCATTCTAATTTTTGT+TGG + chr5_1:68219929-68219948 Msa0746170:intron 25.0%
! ATATATTACAAAAAGGGGAA+AGG + chr5_1:68220030-68220049 Msa0746170:CDS 25.0%
!! GAAAATTGCATACTTTTGTA+TGG - chr5_1:68220089-68220108 None:intergenic 25.0%
!! TTTTTCTTGAATAGGGAATA+TGG + chr5_1:68220231-68220250 Msa0746170:CDS 25.0%
! TAGGCACACATATTATAATT+CGG - chr5_1:68220390-68220409 None:intergenic 25.0%
! GGAACTGGAAAAAAAAAATT+GGG - chr5_1:68220628-68220647 None:intergenic 25.0%
! GATTGATGAAACATATAACT+TGG - chr5_1:68220812-68220831 None:intergenic 25.0%
! TTGTGTAACTATAAAAGTCA+TGG - chr5_1:68220944-68220963 None:intergenic 25.0%
! TTATGGTGATACTATTCATT+AGG + chr5_1:68220965-68220984 Msa0746170:intron 25.0%
! ATTAGATAGGAAAATACCTA+CGG + chr5_1:68221169-68221188 Msa0746170:intron 25.0%
! TTCCTGTGTATGAAATTTAT+TGG + chr5_1:68221207-68221226 Msa0746170:intron 25.0%
! AACCAATAAATTTCATACAC+AGG - chr5_1:68221212-68221231 None:intergenic 25.0%
!!! ATTTATTGGTTGATAGTGTT+TGG + chr5_1:68221221-68221240 Msa0746170:intron 25.0%
! GAAATAAAAAGTTCAAAACG+AGG - chr5_1:68221609-68221628 None:intergenic 25.0%
! ATTCTTGAGAATTGATAAGT+TGG - chr5_1:68221746-68221765 None:intergenic 25.0%
! TATGAAAGTGGAAGTTAAAA+TGG - chr5_1:68221818-68221837 None:intergenic 25.0%
!!! CAATTTTTTTGCTATGAAAG+TGG - chr5_1:68221830-68221849 None:intergenic 25.0%
!! ATAAAATTGATCGGTTGTTT+TGG + chr5_1:68222002-68222021 Msa0746170:intron 25.0%
!!! AAATGATTTTTTTTTTCCCC+AGG - chr5_1:68222325-68222344 None:intergenic 25.0%
! TCATATTAAGTATTAACGGT+AGG + chr5_1:68222375-68222394 Msa0746170:intron 25.0%
! AATGAATAATATTCACCAAC+GGG - chr5_1:68222797-68222816 None:intergenic 25.0%
! GAATGAATAATATTCACCAA+CGG - chr5_1:68222798-68222817 None:intergenic 25.0%
!!! AGTTTTAATTAAATGGCTAC+GGG - chr5_1:68222930-68222949 None:intergenic 25.0%
!!! CAGTTTTAATTAAATGGCTA+CGG - chr5_1:68222931-68222950 None:intergenic 25.0%
!!! TTTTAAAACCAATACCCAAA+TGG + chr5_1:68222968-68222987 Msa0746170:intron 25.0%
!!! AACTAGGTTTTAATCAAAAC+TGG + chr5_1:68223483-68223502 Msa0746170:intron 25.0%
!!! ACTAGGTTTTAATCAAAACT+GGG + chr5_1:68223484-68223503 Msa0746170:intron 25.0%
!! CAAGTGGAATTTCTAAATTT+TGG - chr5_1:68223700-68223719 None:intergenic 25.0%
! AATATTTGACAACTTTCAAG+TGG - chr5_1:68223716-68223735 None:intergenic 25.0%
! AACTCATGATGTACAAATTA+AGG + chr5_1:68224259-68224278 Msa0746170:three_prime_UTR 25.0%
! ACTCATGATGTACAAATTAA+GGG + chr5_1:68224260-68224279 Msa0746170:three_prime_UTR 25.0%
! TCTATTATATGAGGAATATG+AGG - chr5_1:68224323-68224342 None:intergenic 25.0%
!! ATTAATTAAGTTGTTCCACT+TGG + chr5_1:68224447-68224466 Msa0746170:three_prime_UTR 25.0%
ATGATGAAAAGTCAGAATCA+GGG - chr5_1:68215992-68216011 None:intergenic 30.0%
AGGAAGGAATTATGGAAATT+GGG - chr5_1:68216062-68216081 None:intergenic 30.0%
AAGGAAGGAATTATGGAAAT+TGG - chr5_1:68216063-68216082 None:intergenic 30.0%
TTTATTCCCTAACCTGAAAA+GGG - chr5_1:68216219-68216238 None:intergenic 30.0%
! TTTTATTCCCTAACCTGAAA+AGG - chr5_1:68216220-68216239 None:intergenic 30.0%
AAGTGGAAGATCAAAGAAAT+AGG + chr5_1:68216297-68216316 Msa0746170:five_prime_UTR 30.0%
AGTGGAAGATCAAAGAAATA+GGG + chr5_1:68216298-68216317 Msa0746170:five_prime_UTR 30.0%
AAAGAAATAGGGTTGAAAAG+TGG + chr5_1:68216309-68216328 Msa0746170:intron 30.0%
AAGTGGAAGATCAAAGAAAT+AGG + chr5_1:68216297-68216316 Msa0746170:five_prime_UTR 30.0%
AGTGGAAGATCAAAGAAATA+GGG + chr5_1:68216298-68216317 Msa0746170:five_prime_UTR 30.0%
TGTGTTAAAGATGGAAACTT+TGG + chr5_1:68216391-68216410 Msa0746170:exon 30.0%
GTGTTAAAGATGGAAACTTT+GGG + chr5_1:68216392-68216411 Msa0746170:exon 30.0%
ATAACAATGTTGGTGTAACT+TGG + chr5_1:68216489-68216508 Msa0746170:CDS 30.0%
!! TCGTTTTTGTTGGATTATTC+TGG + chr5_1:68216554-68216573 Msa0746170:CDS 30.0%
GAAGTTGCAATAAGGATTAT+TGG + chr5_1:68216692-68216711 Msa0746170:CDS 30.0%
CTGATTATGAATATTCTCTC+CGG - chr5_1:68216720-68216739 None:intergenic 30.0%
GAGAATATTCATAATCAGGT+TGG + chr5_1:68216722-68216741 Msa0746170:CDS 30.0%
! GAATATTCATAATCAGGTTG+GGG + chr5_1:68216724-68216743 Msa0746170:CDS 30.0%
GAATGGAACAGAAAATAACA+GGG + chr5_1:68216928-68216947 Msa0746170:CDS 30.0%
AATGGAAGAACTACTAACAA+TGG - chr5_1:68217199-68217218 None:intergenic 30.0%
!! TAATTTGCTTGGTAGAATAG+TGG + chr5_1:68217303-68217322 Msa0746170:intron 30.0%
!!! AAGTTTTTTGAGGATCACAA+GGG + chr5_1:68217549-68217568 Msa0746170:intron 30.0%
GAATCAGTAAATAAAAGGTG+TGG - chr5_1:68217580-68217599 None:intergenic 30.0%
CTGCAGAATCAGTAAATAAA+AGG - chr5_1:68217585-68217604 None:intergenic 30.0%
! TGCAGAACAAATCTTTTTAC+TGG + chr5_1:68217600-68217619 Msa0746170:intron 30.0%
TTGCAACTTTGCTAATTGTA+AGG + chr5_1:68217660-68217679 Msa0746170:intron 30.0%
AGCTTTCATATTGTTAACAG+AGG - chr5_1:68217749-68217768 None:intergenic 30.0%
ACAATTGTAACTTACGAGAA+AGG - chr5_1:68217810-68217829 None:intergenic 30.0%
TTCATGTGATATGCATTTAC+TGG + chr5_1:68218208-68218227 Msa0746170:CDS 30.0%
!!! GTTGTTTTTATAAGCTATCC+TGG + chr5_1:68218569-68218588 Msa0746170:intron 30.0%
TGATCTTAACTACATATGCA+AGG - chr5_1:68218678-68218697 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr5_1:68218695-68218714 Msa0746170:intron 30.0%
!!! ACAATATTGCAGCTGTTTTT+TGG + chr5_1:68218813-68218832 Msa0746170:intron 30.0%
TCATGAAACAACTACAAAGA+AGG - chr5_1:68218860-68218879 None:intergenic 30.0%
GCTGACATATTATTTCACAT+TGG + chr5_1:68219091-68219110 Msa0746170:intron 30.0%
ATACATGAGAACATATAGAC+AGG + chr5_1:68219321-68219340 Msa0746170:intron 30.0%
GACAAACATTGAAGCAAATA+AGG - chr5_1:68219368-68219387 None:intergenic 30.0%
TATTGATGTATTGTGCATGA+CGG + chr5_1:68219446-68219465 Msa0746170:intron 30.0%
! ACATAGGTTTTTGAACTAGA+TGG + chr5_1:68219599-68219618 Msa0746170:intron 30.0%
GACTATCAGATATATTGATG+CGG + chr5_1:68219974-68219993 Msa0746170:intron 30.0%
!!! TGACATTGTCTGACTTTTTT+AGG + chr5_1:68220134-68220153 Msa0746170:intron 30.0%
ATTCCCTATTCAAGAAAAAC+CGG - chr5_1:68220230-68220249 None:intergenic 30.0%
TTATAATATGTGTGCCTATC+AGG + chr5_1:68220392-68220411 Msa0746170:intron 30.0%
!! CTTTCTTGATAATGCTTTCA+AGG - chr5_1:68220436-68220455 None:intergenic 30.0%
!! CTTGAAAGCATTATCAAGAA+AGG + chr5_1:68220434-68220453 Msa0746170:CDS 30.0%
TCAAGAAAGGAAGTTCATTA+CGG + chr5_1:68220447-68220466 Msa0746170:CDS 30.0%
TGGAAAAAAAAAATTGGGCA+GGG - chr5_1:68220623-68220642 None:intergenic 30.0%
CGGAACTGGAAAAAAAAAAT+TGG - chr5_1:68220629-68220648 None:intergenic 30.0%
!!! TGTTCTGATTCAGTGTTTTT+TGG + chr5_1:68220704-68220723 Msa0746170:intron 30.0%
TACATGAGATGAATTGTAGT+TGG + chr5_1:68220776-68220795 Msa0746170:intron 30.0%
TGATGAAACATATAACTTGG+AGG - chr5_1:68220809-68220828 None:intergenic 30.0%
CATGCATATAACGTATAACT+TGG - chr5_1:68220882-68220901 None:intergenic 30.0%
ACTATAAAAGTCATGGATGA+TGG - chr5_1:68220937-68220956 None:intergenic 30.0%
TTTATTTGTGTACTTGCACA+CGG + chr5_1:68221025-68221044 Msa0746170:intron 30.0%
CAAATATAACAAGCAACCAT+AGG - chr5_1:68221098-68221117 None:intergenic 30.0%
AAACAGTCAGAGGAATATAA+GGG - chr5_1:68221129-68221148 None:intergenic 30.0%
!!! ATATTTTCTGAAACAGTCAG+AGG - chr5_1:68221139-68221158 None:intergenic 30.0%
ATTCATCATGTGTTATGCAA+GGG + chr5_1:68221253-68221272 Msa0746170:intron 30.0%
AAGTTCAAAACGAGGAATAA+AGG - chr5_1:68221601-68221620 None:intergenic 30.0%
! AGAGCGCTAAAAAATTGTTT+AGG + chr5_1:68221680-68221699 Msa0746170:intron 30.0%
GCTAAAAAATTGTTTAGGCT+TGG + chr5_1:68221685-68221704 Msa0746170:intron 30.0%
AAGTGGAAGTTAAAATGGAA+CGG - chr5_1:68221813-68221832 None:intergenic 30.0%
TCAGTGCGATAAATAGTTTA+CGG - chr5_1:68221908-68221927 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr5_1:68222197-68222216 Msa0746170:intron 30.0%
! TAATGAGTTGGATCGAAATA+TGG + chr5_1:68222209-68222228 Msa0746170:intron 30.0%
AATGGATAAGAGAGAAAGAT+AGG + chr5_1:68222433-68222452 Msa0746170:intron 30.0%
ATGGATAAGAGAGAAAGATA+GGG + chr5_1:68222434-68222453 Msa0746170:intron 30.0%
! AGTTGTGTATCATGTTTTCT+AGG + chr5_1:68222513-68222532 Msa0746170:intron 30.0%
CGCAAGAAACAAATATTTCT+AGG - chr5_1:68222640-68222659 None:intergenic 30.0%
!!! AATTTTTTTGGACATCCCTT+GGG - chr5_1:68222834-68222853 None:intergenic 30.0%
!!! GTTTTTTAATTACATACGCC+AGG - chr5_1:68222882-68222901 None:intergenic 30.0%
CGTAGCCATTTAATTAAAAC+TGG + chr5_1:68222929-68222948 Msa0746170:intron 30.0%
!!! TGGGTATTGGTTTTAAAAGT+GGG - chr5_1:68222966-68222985 None:intergenic 30.0%
!!! TTGGGTATTGGTTTTAAAAG+TGG - chr5_1:68222967-68222986 None:intergenic 30.0%
CACATTAAGTTTGACCATTT+GGG - chr5_1:68222985-68223004 None:intergenic 30.0%
AAATCAGATGAACGAATCAA+AGG - chr5_1:68223094-68223113 None:intergenic 30.0%
AGAGTTTCGTTAATAGAACT+GGG + chr5_1:68223377-68223396 Msa0746170:intron 30.0%
GAAAGTAAAAAAGAAGTCGT+TGG + chr5_1:68223454-68223473 Msa0746170:intron 30.0%
AAGTCGTTGGATTAATAACT+AGG + chr5_1:68223467-68223486 Msa0746170:intron 30.0%
TCAAAACCTAAACCAAATAG+TGG + chr5_1:68223582-68223601 Msa0746170:intron 30.0%
ATAGAAACCAATCCACTATT+TGG - chr5_1:68223597-68223616 None:intergenic 30.0%
!! AAATAGTGGATTGGTTTCTA+TGG + chr5_1:68223596-68223615 Msa0746170:intron 30.0%
!! GGAATTTCTAAATTTTGGTG+TGG - chr5_1:68223695-68223714 None:intergenic 30.0%
TGAAATAACTACTGATGAAG+AGG + chr5_1:68223735-68223754 Msa0746170:intron 30.0%
ATACAAGTCATTACACAAAC+TGG + chr5_1:68224038-68224057 Msa0746170:intron 30.0%
TTACACAAACTGGTATTAAG+AGG + chr5_1:68224048-68224067 Msa0746170:intron 30.0%
!! CTGAATAAAGAAGTGTTTGT+TGG - chr5_1:68224131-68224150 None:intergenic 30.0%
CAACAAACACTTCTTTATTC+AGG + chr5_1:68224129-68224148 Msa0746170:intron 30.0%
!! CATGAGTTGATTAAAACAAC+TGG - chr5_1:68224247-68224266 None:intergenic 30.0%
TTTGCTGAGATACTCAAAAT+CGG + chr5_1:68224284-68224303 Msa0746170:three_prime_UTR 30.0%
!! GTTTGTATATGTTTTTGCAC+AGG + chr5_1:68224410-68224429 Msa0746170:three_prime_UTR 30.0%
GATGATGAAAAGTCAGAATC+AGG - chr5_1:68215993-68216012 None:intergenic 35.0%
GGAAGGAATTATGGAAATTG+GGG - chr5_1:68216061-68216080 None:intergenic 35.0%
AGCGATTAAGGAAGGAATTA+TGG - chr5_1:68216070-68216089 None:intergenic 35.0%
! ATGGATTAAGCGATTAAGGA+AGG - chr5_1:68216078-68216097 None:intergenic 35.0%
! GCTTATGGATTAAGCGATTA+AGG - chr5_1:68216082-68216101 None:intergenic 35.0%
!! AAGGGAGTGAATAGCTTTAT+AGG - chr5_1:68216115-68216134 None:intergenic 35.0%
! ATTTTCTTCATCCCCTTTTC+AGG + chr5_1:68216204-68216223 Msa0746170:intron 35.0%
TTATTCCCTAACCTGAAAAG+GGG - chr5_1:68216218-68216237 None:intergenic 35.0%
AGAGTGAAGAATTGAGGATT+AGG + chr5_1:68216352-68216371 Msa0746170:five_prime_UTR 35.0%
GAGTGAAGAATTGAGGATTA+GGG + chr5_1:68216353-68216372 Msa0746170:five_prime_UTR 35.0%
TTAAAGATGGAAACTTTGGG+TGG + chr5_1:68216395-68216414 Msa0746170:exon 35.0%
AATGTTGGTGTAACTTGGTA+TGG + chr5_1:68216494-68216513 Msa0746170:CDS 35.0%
AACGAAATCGGTGACAAAAA+GGG - chr5_1:68216539-68216558 None:intergenic 35.0%
AAACGAAATCGGTGACAAAA+AGG - chr5_1:68216540-68216559 None:intergenic 35.0%
CGGAGAGAATATTCATAATC+AGG + chr5_1:68216718-68216737 Msa0746170:CDS 35.0%
GAAGTAGGTTATGATGATTG+TGG + chr5_1:68216746-68216765 Msa0746170:CDS 35.0%
GGAATGGAACAGAAAATAAC+AGG + chr5_1:68216927-68216946 Msa0746170:CDS 35.0%
TCAGAGATATGATATTCAGC+TGG + chr5_1:68216964-68216983 Msa0746170:CDS 35.0%
TTCATTCGACAGCATTTACA+AGG + chr5_1:68217040-68217059 Msa0746170:CDS 35.0%
TTTGTTTGTGATGTTGAGCT+TGG + chr5_1:68217102-68217121 Msa0746170:intron 35.0%
!! TTGTTCTGAGGTAATTTGCT+TGG + chr5_1:68217292-68217311 Msa0746170:intron 35.0%
!! AGCATTTTTCGGTTGGATTT+GGG - chr5_1:68217459-68217478 None:intergenic 35.0%
!! AAGCATTTTTCGGTTGGATT+TGG - chr5_1:68217460-68217479 None:intergenic 35.0%
! TAAGCCACACAAGCATTTTT+CGG - chr5_1:68217470-68217489 None:intergenic 35.0%
!!! TTTCTCTAAGCCCCTTTTTT+CGG - chr5_1:68217511-68217530 None:intergenic 35.0%
!!! ATCACGTGAGAAGTTTTTTG+AGG + chr5_1:68217539-68217558 Msa0746170:intron 35.0%
!!! GAAGTTTTTTGAGGATCACA+AGG + chr5_1:68217548-68217567 Msa0746170:intron 35.0%
TTTACAATCTCTTCCTCTGA+AGG + chr5_1:68217841-68217860 Msa0746170:intron 35.0%
CATGCTATAAGTGTGAACAA+TGG - chr5_1:68217875-68217894 None:intergenic 35.0%
! GCATGAGTCTTGTCTTAATT+TGG + chr5_1:68217890-68217909 Msa0746170:intron 35.0%
GAAATGACTACCAGATAATG+TGG - chr5_1:68217931-68217950 None:intergenic 35.0%
CAGGTTTCTTTGTCACAATT+TGG + chr5_1:68217961-68217980 Msa0746170:intron 35.0%
ACATATTTCACTCAGCGTTA+TGG - chr5_1:68218127-68218146 None:intergenic 35.0%
!!! GTTTTATTTTGCAGGGAGAT+AGG + chr5_1:68218145-68218164 Msa0746170:intron 35.0%
ATGTGATATGCATTTACTGG+TGG + chr5_1:68218211-68218230 Msa0746170:CDS 35.0%
ATATTCACGATCTTGGTCAA+TGG + chr5_1:68218303-68218322 Msa0746170:CDS 35.0%
AGACTGTTTGGAAAAGCTTA+TGG - chr5_1:68218648-68218667 None:intergenic 35.0%
! CTTTTTACTAAGGACCTGTT+TGG - chr5_1:68218712-68218731 None:intergenic 35.0%
!!! CAGGAGCTTACTTTTTACTA+AGG - chr5_1:68218722-68218741 None:intergenic 35.0%
ATGCATGACATACATATGCA+AGG + chr5_1:68218773-68218792 Msa0746170:intron 35.0%
TGCATGACATACATATGCAA+GGG + chr5_1:68218774-68218793 Msa0746170:intron 35.0%
! TTAATCGACTCCATTGTTTG+AGG + chr5_1:68218975-68218994 Msa0746170:intron 35.0%
!! TCATTTGGTTGTCACTTTGT+CGG - chr5_1:68219539-68219558 None:intergenic 35.0%
AAGTGACAACCAAATGAGAA+AGG + chr5_1:68219542-68219561 Msa0746170:intron 35.0%
GGCTGAACCTTAAAAAACAT+AGG + chr5_1:68219583-68219602 Msa0746170:intron 35.0%
GCTCTAGTACCAATTTAAGA+GGG + chr5_1:68219621-68219640 Msa0746170:intron 35.0%
ATCCCTTCAGATTGTAATTG+TGG + chr5_1:68219903-68219922 Msa0746170:intron 35.0%
!!! GTACCGGTTTTTCTTGAATA+GGG + chr5_1:68220224-68220243 Msa0746170:CDS 35.0%
GAAAGTTAAATACAACCCTG+TGG - chr5_1:68220277-68220296 None:intergenic 35.0%
AACTTTCAAGCTAACATCTG+TGG + chr5_1:68220290-68220309 Msa0746170:CDS 35.0%
!! AATAAAGCATTGGACCTGAT+AGG - chr5_1:68220409-68220428 None:intergenic 35.0%
TCAAGGCAGAAATAAAGCAT+TGG - chr5_1:68220419-68220438 None:intergenic 35.0%
CAAGAAAGGAAGTTCATTAC+GGG + chr5_1:68220448-68220467 Msa0746170:CDS 35.0%
AAGAAAGGAAGTTCATTACG+GGG + chr5_1:68220449-68220468 Msa0746170:CDS 35.0%
AATTATTACCTGTTCTGCTG+TGG - chr5_1:68220481-68220500 None:intergenic 35.0%
AAATTCCACATGGCATTAGA+GGG - chr5_1:68220576-68220595 None:intergenic 35.0%
AAAATTCCACATGGCATTAG+AGG - chr5_1:68220577-68220596 None:intergenic 35.0%
! TCTAATGCCATGTGGAATTT+TGG + chr5_1:68220576-68220595 Msa0746170:intron 35.0%
AAAAAAAATTGGGCAGGGAA+TGG - chr5_1:68220618-68220637 None:intergenic 35.0%
CTGGAAAAAAAAAATTGGGC+AGG - chr5_1:68220624-68220643 None:intergenic 35.0%
AGTATCTTCCGAAAAACCTA+TGG + chr5_1:68221079-68221098 Msa0746170:intron 35.0%
! ACAAGCAACCATAGGTTTTT+CGG - chr5_1:68221090-68221109 None:intergenic 35.0%
AACAGTCAGAGGAATATAAG+GGG - chr5_1:68221128-68221147 None:intergenic 35.0%
GAAACAGTCAGAGGAATATA+AGG - chr5_1:68221130-68221149 None:intergenic 35.0%
AAAACAAAACAAGCTACCGT+AGG - chr5_1:68221188-68221207 None:intergenic 35.0%
!!! TGGTTGATAGTGTTTGGTTT+TGG + chr5_1:68221227-68221246 Msa0746170:intron 35.0%
!!! GGTTGATAGTGTTTGGTTTT+GGG + chr5_1:68221228-68221247 Msa0746170:intron 35.0%
GATTCATCATGTGTTATGCA+AGG + chr5_1:68221252-68221271 Msa0746170:intron 35.0%
ATGCACAGATACTTTGTTCT+TGG + chr5_1:68221397-68221416 Msa0746170:intron 35.0%
TGCACAGATACTTTGTTCTT+GGG + chr5_1:68221398-68221417 Msa0746170:intron 35.0%
CAAAACGAGGAATAAAGGTA+TGG - chr5_1:68221596-68221615 None:intergenic 35.0%
TTTATCGCACTGAGAGATAT+AGG + chr5_1:68221915-68221934 Msa0746170:intron 35.0%
ATTTATGCTTGGATATGTCC+TGG + chr5_1:68222168-68222187 Msa0746170:intron 35.0%
TTTATGCTTGGATATGTCCT+GGG + chr5_1:68222169-68222188 Msa0746170:intron 35.0%
!!! ATCTCTAGATCTTTTTTCCC+AGG - chr5_1:68222189-68222208 None:intergenic 35.0%
! TTGGTTGTTATTGAATGTCC+TGG + chr5_1:68222304-68222323 Msa0746170:intron 35.0%
! TGGTTGTTATTGAATGTCCT+GGG + chr5_1:68222305-68222324 Msa0746170:intron 35.0%
AACTGTAAATAGACTCCACA+TGG - chr5_1:68222497-68222516 None:intergenic 35.0%
! TCGTGAACTTGAAGTATTCT+TGG + chr5_1:68222553-68222572 Msa0746170:intron 35.0%
! CGTGAACTTGAAGTATTCTT+GGG + chr5_1:68222554-68222573 Msa0746170:intron 35.0%
! CAACCTAAACATTTTCACAC+TGG - chr5_1:68222599-68222618 None:intergenic 35.0%
CAGTGTGAAAATGTTTAGGT+TGG + chr5_1:68222597-68222616 Msa0746170:intron 35.0%
TTCAAATATAGTCATGCCCA+AGG + chr5_1:68222815-68222834 Msa0746170:intron 35.0%
TCAAATATAGTCATGCCCAA+GGG + chr5_1:68222816-68222835 Msa0746170:intron 35.0%
!!! CAATTTTTTTGGACATCCCT+TGG - chr5_1:68222835-68222854 None:intergenic 35.0%
CAAGGGATGTCCAAAAAAAT+TGG + chr5_1:68222833-68222852 Msa0746170:intron 35.0%
!!! TTCTGCTGGACCAATTTTTT+TGG - chr5_1:68222846-68222865 None:intergenic 35.0%
!!! GCTTTTTAAAATGGTTCTGC+TGG - chr5_1:68222860-68222879 None:intergenic 35.0%
!! CAGAACCATTTTAAAAAGCC+TGG + chr5_1:68222861-68222880 Msa0746170:intron 35.0%
!! ATACGCCAGGCTTTTTAAAA+TGG - chr5_1:68222869-68222888 None:intergenic 35.0%
AAGTTTGACCATTTGGGTAT+TGG - chr5_1:68222979-68222998 None:intergenic 35.0%
GCACATTAAGTTTGACCATT+TGG - chr5_1:68222986-68223005 None:intergenic 35.0%
AATTCTCAATCCTTTCTCGT+TGG + chr5_1:68223057-68223076 Msa0746170:intron 35.0%
GCACTTGCAGAAAAATCAAA+CGG + chr5_1:68223149-68223168 Msa0746170:intron 35.0%
ATCACTGAATCAGGATATCT+CGG - chr5_1:68223292-68223311 None:intergenic 35.0%
GGAAAAGATATCACTGAATC+AGG - chr5_1:68223301-68223320 None:intergenic 35.0%
! TTCAGTGATATCTTTTCCAG+TGG + chr5_1:68223303-68223322 Msa0746170:intron 35.0%
CAGAGTTTCGTTAATAGAAC+TGG + chr5_1:68223376-68223395 Msa0746170:intron 35.0%
GAGTTTCGTTAATAGAACTG+GGG + chr5_1:68223378-68223397 Msa0746170:intron 35.0%
TAATAGAACTGGGGAAACAA+AGG + chr5_1:68223387-68223406 Msa0746170:intron 35.0%
AATAGAACTGGGGAAACAAA+GGG + chr5_1:68223388-68223407 Msa0746170:intron 35.0%
ACAGAATAACTCTGAACTGT+TGG + chr5_1:68223422-68223441 Msa0746170:intron 35.0%
!! ACCTAAACCAAATAGTGGAT+TGG + chr5_1:68223587-68223606 Msa0746170:intron 35.0%
! ACCAATCCACTATTTGGTTT+AGG - chr5_1:68223591-68223610 None:intergenic 35.0%
! TATTCAGGTTTGAGAGAGAA+AGG + chr5_1:68224144-68224163 Msa0746170:intron 35.0%
TTTAACCAATGCTCTGCATA+GGG - chr5_1:68224177-68224196 None:intergenic 35.0%
TTGCTGAGATACTCAAAATC+GGG + chr5_1:68224285-68224304 Msa0746170:three_prime_UTR 35.0%
TATGAGGAATATGAGGTTAG+CGG - chr5_1:68224316-68224335 None:intergenic 35.0%
ATAGGTTACCTGAGAGCTTA+TGG - chr5_1:68216097-68216116 None:intergenic 40.0%
!!! TTCATCCCCTTTTCAGGTTA+GGG + chr5_1:68216210-68216229 Msa0746170:intron 40.0%
AGGGTTAGAGTGAAGAATTG+AGG + chr5_1:68216346-68216365 Msa0746170:intron 40.0%
! GACGATGCTGATGATAATGA+TGG - chr5_1:68216437-68216456 None:intergenic 40.0%
GTGTAACTTGGTATGGAATG+AGG + chr5_1:68216501-68216520 Msa0746170:CDS 40.0%
ACGAAATCGGTGACAAAAAG+GGG - chr5_1:68216538-68216557 None:intergenic 40.0%
!!! GTCACCGATTTCGTTTTTGT+TGG + chr5_1:68216544-68216563 Msa0746170:CDS 40.0%
CGTTCGAGTAATGATTCTGA+GGG + chr5_1:68216584-68216603 Msa0746170:CDS 40.0%
! GAGGGTATGATTGTCAACAA+CGG + chr5_1:68216602-68216621 Msa0746170:CDS 40.0%
ATTGTCAACAACGGAGTTTC+TGG + chr5_1:68216611-68216630 Msa0746170:CDS 40.0%
GCAATAAGGATTATTGGAGC+CGG + chr5_1:68216698-68216717 Msa0746170:CDS 40.0%
AGGTTATGATGATTGTGGTG+AGG + chr5_1:68216751-68216770 Msa0746170:CDS 40.0%
GAAGAAGATGAAGACACAAG+AGG - chr5_1:68216863-68216882 None:intergenic 40.0%
!! TCCTTTCTCGCTTTTGTTGT+TGG + chr5_1:68217012-68217031 Msa0746170:CDS 40.0%
ACCAACAACAAAAGCGAGAA+AGG - chr5_1:68217016-68217035 None:intergenic 40.0%
TTGCTTGGTAGAATAGTGGT+TGG + chr5_1:68217307-68217326 Msa0746170:intron 40.0%
TTTCCATCATTCCCAAATGC+AGG - chr5_1:68217338-68217357 None:intergenic 40.0%
!! TGGCTGTTGTTTCCGAAAAA+AGG + chr5_1:68217496-68217515 Msa0746170:intron 40.0%
!! GGCTGTTGTTTCCGAAAAAA+GGG + chr5_1:68217497-68217516 Msa0746170:intron 40.0%
!! GCTGTTGTTTCCGAAAAAAG+GGG + chr5_1:68217498-68217517 Msa0746170:intron 40.0%
TAAGGTAGAACACCGACAAA+GGG - chr5_1:68217631-68217650 None:intergenic 40.0%
! TAAGAAGCAGACAGCTTTGA+AGG + chr5_1:68218019-68218038 Msa0746170:CDS 40.0%
AGGAAAGTCTCTTTACTTGC+TGG + chr5_1:68218165-68218184 Msa0746170:CDS 40.0%
GTGAATATTGCATGCCAGAA+AGG - chr5_1:68218291-68218310 None:intergenic 40.0%
GCATGCAATATTCACGATCT+TGG + chr5_1:68218296-68218315 Msa0746170:CDS 40.0%
TTGATCTTACATTGCTGCAG+TGG + chr5_1:68218348-68218367 Msa0746170:intron 40.0%
CCTGTAATAATTACAGACCC+CGG + chr5_1:68218738-68218757 Msa0746170:intron 40.0%
CTGTAATAATTACAGACCCC+GGG + chr5_1:68218739-68218758 Msa0746170:intron 40.0%
!!! AGCTGTTTTTTGGTCACTGA+TGG + chr5_1:68218823-68218842 Msa0746170:intron 40.0%
! TTGGTCACTGATGGTGAAAT+TGG + chr5_1:68218832-68218851 Msa0746170:intron 40.0%
AAACTTGCCTATGTGTAGAC+AGG + chr5_1:68218908-68218927 Msa0746170:intron 40.0%
CTGCAGTCGATATCACATAA+GGG - chr5_1:68219030-68219049 None:intergenic 40.0%
ACTGCAGTCGATATCACATA+AGG - chr5_1:68219031-68219050 None:intergenic 40.0%
TAACCAAGTTGCATCTCAGT+AGG + chr5_1:68219226-68219245 Msa0746170:intron 40.0%
AAGGCTGATCCTTTCTCATT+TGG - chr5_1:68219554-68219573 None:intergenic 40.0%
! GGCTCTAGTACCAATTTAAG+AGG + chr5_1:68219620-68219639 Msa0746170:intron 40.0%
GGCCACAATTACAATCTGAA+GGG - chr5_1:68219908-68219927 None:intergenic 40.0%
AGGCCACAATTACAATCTGA+AGG - chr5_1:68219909-68219928 None:intergenic 40.0%
AAGTGTTAATCACCTGTCGA+CGG - chr5_1:68220065-68220084 None:intergenic 40.0%
!!! GGTACCGGTTTTTCTTGAAT+AGG + chr5_1:68220223-68220242 Msa0746170:CDS 40.0%
! AATGCCATGTGGAATTTTGG+AGG + chr5_1:68220579-68220598 Msa0746170:intron 40.0%
ACATCCTCCAAAATTCCACA+TGG - chr5_1:68220586-68220605 None:intergenic 40.0%
AAAATCCCATGCAACAGCAA+CGG - chr5_1:68220649-68220668 None:intergenic 40.0%
! CGGTGGTGTATATTGTTTTC+TGG + chr5_1:68221045-68221064 Msa0746170:intron 40.0%
ACAGTCAGAGGAATATAAGG+GGG - chr5_1:68221127-68221146 None:intergenic 40.0%
GCACAGATACTTTGTTCTTG+GGG + chr5_1:68221399-68221418 Msa0746170:intron 40.0%
TCTCTTGGCATATAGCACAT+AGG - chr5_1:68221503-68221522 None:intergenic 40.0%
TGTGGGAGAAGTTGAATTCA+TGG + chr5_1:68222088-68222107 Msa0746170:intron 40.0%
AATATATGGCTTTCCCATGG+TGG - chr5_1:68222124-68222143 None:intergenic 40.0%
GCAAATATATGGCTTTCCCA+TGG - chr5_1:68222127-68222146 None:intergenic 40.0%
! GGTTGTTATTGAATGTCCTG+GGG + chr5_1:68222306-68222325 Msa0746170:intron 40.0%
TAACGGTAGGTGAGTTTAGT+AGG + chr5_1:68222388-68222407 Msa0746170:intron 40.0%
! CTTGAAGTATTCTTGGGTGT+TGG + chr5_1:68222560-68222579 Msa0746170:intron 40.0%
!! TGGGTGTTGGACAATGTTTA+AGG + chr5_1:68222573-68222592 Msa0746170:intron 40.0%
AGGCCAGTGTGAAAATGTTT+AGG + chr5_1:68222593-68222612 Msa0746170:intron 40.0%
! AACACCACTGCACTTTTACT+AGG + chr5_1:68222744-68222763 Msa0746170:intron 40.0%
CTAAGGAAAAATGATCCCGT+TGG + chr5_1:68222779-68222798 Msa0746170:intron 40.0%
CAGATGAACGAATCAAAGGA+TGG - chr5_1:68223090-68223109 None:intergenic 40.0%
TGGAGAGAAACGACAAGAAA+GGG - chr5_1:68223121-68223140 None:intergenic 40.0%
TTGGAGAGAAACGACAAGAA+AGG - chr5_1:68223122-68223141 None:intergenic 40.0%
! TTTCTTGTCGTTTCTCTCCA+AGG + chr5_1:68223121-68223140 Msa0746170:intron 40.0%
! TTCTTGTCGTTTCTCTCCAA+GGG + chr5_1:68223122-68223141 Msa0746170:intron 40.0%
AATAATGTCACAGTCGAGTG+AGG + chr5_1:68223188-68223207 Msa0746170:intron 40.0%
! AGTGATATCTTTTCCAGTGG+AGG + chr5_1:68223306-68223325 Msa0746170:intron 40.0%
! GTGATATCTTTTCCAGTGGA+GGG + chr5_1:68223307-68223326 Msa0746170:intron 40.0%
AGTCAGTGAGTGTAGTAGAA+AGG + chr5_1:68223353-68223372 Msa0746170:intron 40.0%
AATCAAAACTGGGTCTGAAC+TGG + chr5_1:68223494-68223513 Msa0746170:intron 40.0%
ATCAAAACTGGGTCTGAACT+GGG + chr5_1:68223495-68223514 Msa0746170:intron 40.0%
TTACCGTGACTCATGCTTAA+TGG + chr5_1:68223624-68223643 Msa0746170:intron 40.0%
! GAGGTATATTTGAGACGTGT+TGG + chr5_1:68223754-68223773 Msa0746170:intron 40.0%
TTAACCAATGCTCTGCATAG+GGG - chr5_1:68224176-68224195 None:intergenic 40.0%
CTTTAACCAATGCTCTGCAT+AGG - chr5_1:68224178-68224197 None:intergenic 40.0%
! ACTTGTTGATCCATCTCCAA+AGG - chr5_1:68224216-68224235 None:intergenic 40.0%
TGCTGAGATACTCAAAATCG+GGG + chr5_1:68224286-68224305 Msa0746170:three_prime_UTR 40.0%
ATGAGGAATATGAGGTTAGC+GGG - chr5_1:68224315-68224334 None:intergenic 40.0%
ACACGCTCAACACTCTCAAA+AGG + chr5_1:68215948-68215967 Msa0746170:five_prime_UTR 45.0%
GAATCAGGGAGCTGAAAACT+TGG - chr5_1:68215978-68215997 None:intergenic 45.0%
CGCTTAATCCATAAGCTCTC+AGG + chr5_1:68216086-68216105 Msa0746170:five_prime_UTR 45.0%
!!! CTTCATCCCCTTTTCAGGTT+AGG + chr5_1:68216209-68216228 Msa0746170:intron 45.0%
! GCATCGTCGTCATCATCTTT+TGG + chr5_1:68216449-68216468 Msa0746170:CDS 45.0%
! TCGTCGTCATCATCTTTTGG+AGG + chr5_1:68216452-68216471 Msa0746170:CDS 45.0%
! CGTCGTCATCATCTTTTGGA+GGG + chr5_1:68216453-68216472 Msa0746170:CDS 45.0%
GGTGACAAAAAGGGGTTAAC+AGG - chr5_1:68216530-68216549 None:intergenic 45.0%
GCGTTCGAGTAATGATTCTG+AGG + chr5_1:68216583-68216602 Msa0746170:CDS 45.0%
!! CAACAACGGAGTTTCTGGTT+CGG + chr5_1:68216616-68216635 Msa0746170:CDS 45.0%
!! TTACGATCTCAGGTTGATGC+TGG + chr5_1:68216641-68216660 Msa0746170:CDS 45.0%
!! CATAATCAGGTTGGGGAAGT+AGG + chr5_1:68216731-68216750 Msa0746170:CDS 45.0%
GATTGTGGTGAGGAGCTTAT+TGG + chr5_1:68216761-68216780 Msa0746170:CDS 45.0%
GAGCTTATTGGTGAGAGAAG+TGG + chr5_1:68216773-68216792 Msa0746170:CDS 45.0%
AGAAGTGGAATGCCTGGATT+GGG + chr5_1:68216788-68216807 Msa0746170:CDS 45.0%
GTGGAATTGAGGCTAGTGAA+GGG + chr5_1:68216834-68216853 Msa0746170:CDS 45.0%
TGGAATTGAGGCTAGTGAAG+GGG + chr5_1:68216835-68216854 Msa0746170:CDS 45.0%
ATATTCAGCTGGTTGCCAAG+TGG + chr5_1:68216975-68216994 Msa0746170:CDS 45.0%
AAGAATCTGCTCGATCCACT+TGG - chr5_1:68216993-68217012 None:intergenic 45.0%
!! CCACACAAGCATTTTTCGGT+TGG - chr5_1:68217466-68217485 None:intergenic 45.0%
CCAACCGAAAAATGCTTGTG+TGG + chr5_1:68217463-68217482 Msa0746170:intron 45.0%
GCTTGTGTGGCTTACAATAC+TGG + chr5_1:68217476-68217495 Msa0746170:intron 45.0%
!! TTACTGGTTCTCCCCTTTGT+CGG + chr5_1:68217616-68217635 Msa0746170:intron 45.0%
AAGGTAGAACACCGACAAAG+GGG - chr5_1:68217630-68217649 None:intergenic 45.0%
CTAAGGTAGAACACCGACAA+AGG - chr5_1:68217632-68217651 None:intergenic 45.0%
!! AATGGATTGTGCACCTTCAG+AGG - chr5_1:68217857-68217876 None:intergenic 45.0%
AGTCATTTCTGCGAACTTGC+AGG + chr5_1:68217942-68217961 Msa0746170:intron 45.0%
! TGTTGGGTTAGGAGGTAACA+TGG - chr5_1:68218268-68218287 None:intergenic 45.0%
!! TTGCATGCCAGAAAGGTGTT+GGG - chr5_1:68218284-68218303 None:intergenic 45.0%
! ATTGCATGCCAGAAAGGTGT+TGG - chr5_1:68218285-68218304 None:intergenic 45.0%
CACGATCTTGGTCAATGGTA+TGG + chr5_1:68218308-68218327 Msa0746170:intron 45.0%
AAGCTATCCTGGAGAGCTTA+TGG + chr5_1:68218580-68218599 Msa0746170:intron 45.0%
CCTAATTCCATAAGCTCTCC+AGG - chr5_1:68218590-68218609 None:intergenic 45.0%
CCTGGAGAGCTTATGGAATT+AGG + chr5_1:68218587-68218606 Msa0746170:intron 45.0%
CAAGGACTTGTGAGACTGTT+TGG - chr5_1:68218660-68218679 None:intergenic 45.0%
CCGGGGTCTGTAATTATTAC+AGG - chr5_1:68218741-68218760 None:intergenic 45.0%
CAAGTTGCATCTCAGTAGGT+GGG + chr5_1:68219230-68219249 Msa0746170:intron 45.0%
AAGTTGCATCTCAGTAGGTG+GGG + chr5_1:68219231-68219250 Msa0746170:intron 45.0%
GGTTGGATACATGGAACAGA+CGG + chr5_1:68219252-68219271 Msa0746170:intron 45.0%
GTTGGATACATGGAACAGAC+GGG + chr5_1:68219253-68219272 Msa0746170:intron 45.0%
ATGACGGCATCAACACTTAG+AGG + chr5_1:68219462-68219481 Msa0746170:intron 45.0%
GCATCAACACTTAGAGGAGA+CGG + chr5_1:68219468-68219487 Msa0746170:intron 45.0%
! GTCACTTTGTCGGATATCAC+AGG - chr5_1:68219529-68219548 None:intergenic 45.0%
ATGAGAAAGGATCAGCCTTC+TGG + chr5_1:68219555-68219574 Msa0746170:intron 45.0%
ATTGATGCGGCAAGTTGCAA+TGG + chr5_1:68219987-68220006 Msa0746170:CDS 45.0%
AGGTCATAATTTCCGTCGAC+AGG + chr5_1:68220050-68220069 Msa0746170:CDS 45.0%
AAGAAAAACCGGTACCAGAC+TGG - chr5_1:68220219-68220238 None:intergenic 45.0%
! TCTTTTCGTCACTGACCACA+GGG + chr5_1:68220259-68220278 Msa0746170:CDS 45.0%
GCTAACATCTGTGGTTGAGA+AGG + chr5_1:68220299-68220318 Msa0746170:CDS 45.0%
AAAGTCCCTCTAATGCCATG+TGG + chr5_1:68220568-68220587 Msa0746170:intron 45.0%
AAAATTGGGCAGGGAATGGA+GGG - chr5_1:68220614-68220633 None:intergenic 45.0%
AAAAATTGGGCAGGGAATGG+AGG - chr5_1:68220615-68220634 None:intergenic 45.0%
ATTTGTGTACTTGCACACGG+TGG + chr5_1:68221028-68221047 Msa0746170:intron 45.0%
GCATATAGCACATAGGTCAC+CGG - chr5_1:68221496-68221515 None:intergenic 45.0%
TAGGGGAATGCATCTTCTCT+TGG - chr5_1:68221518-68221537 None:intergenic 45.0%
TTTGCAGCGCAACAAGATAG+GGG - chr5_1:68221535-68221554 None:intergenic 45.0%
GTTTGCAGCGCAACAAGATA+GGG - chr5_1:68221536-68221555 None:intergenic 45.0%
TGTTTGCAGCGCAACAAGAT+AGG - chr5_1:68221537-68221556 None:intergenic 45.0%
! GCGAAGATTGTGTTTCTGAG+TGG + chr5_1:68221565-68221584 Msa0746170:CDS 45.0%
ATCGCACTGAGAGATATAGG+TGG + chr5_1:68221918-68221937 Msa0746170:intron 45.0%
AGAGAAAGATAGGGTTCCCT+AGG + chr5_1:68222443-68222462 Msa0746170:intron 45.0%
TGGCAATTGTCAACGACCAA+GGG - chr5_1:68222477-68222496 None:intergenic 45.0%
ATGGCAATTGTCAACGACCA+AGG - chr5_1:68222478-68222497 None:intergenic 45.0%
! GTGCAGTGGTGTTTGTTAGA+AGG - chr5_1:68222737-68222756 None:intergenic 45.0%
! CATGCCTAGTAAAAGTGCAG+TGG - chr5_1:68222751-68222770 None:intergenic 45.0%
CTAGGCATGAAGATGCTCTA+AGG + chr5_1:68222762-68222781 Msa0746170:intron 45.0%
! CGGCTGAGAGCACATAAATT+TGG - chr5_1:68223012-68223031 None:intergenic 45.0%
AACGTTAGCGTGACATGAAG+CGG - chr5_1:68223032-68223051 None:intergenic 45.0%
GAACGAATCAAAGGATGGAC+TGG - chr5_1:68223085-68223104 None:intergenic 45.0%
GGAGAGAAACGACAAGAAAG+GGG - chr5_1:68223120-68223139 None:intergenic 45.0%
GAGGCAAAATCAGTAGTGAC+AGG - chr5_1:68223270-68223289 None:intergenic 45.0%
ACTGAATCAGGATATCTCGG+AGG - chr5_1:68223289-68223308 None:intergenic 45.0%
TGACTGCTGGAATCATGCAT+CGG - chr5_1:68223338-68223357 None:intergenic 45.0%
TGGCCATTAAGCATGAGTCA+CGG - chr5_1:68223630-68223649 None:intergenic 45.0%
GAAACAGTACTTCTGAGCTC+TGG - chr5_1:68223650-68223669 None:intergenic 45.0%
TAACCAATGCTCTGCATAGG+GGG - chr5_1:68224175-68224194 None:intergenic 45.0%
GCTGAGATACTCAAAATCGG+GGG + chr5_1:68224287-68224306 Msa0746170:three_prime_UTR 45.0%
GCAATTTCAGCACTTCCAAG+TGG - chr5_1:68224465-68224484 None:intergenic 45.0%
!!! TATTTTTTTTTTAAATTGTT+AGG - chr5_1:68223823-68223842 None:intergenic 5.0%
!! GAGTGTTGAGCGTGTGAATG+CGG - chr5_1:68215943-68215962 None:intergenic 50.0%
! TGGTTCGGAGTTACGATCTC+AGG + chr5_1:68216631-68216650 Msa0746170:CDS 50.0%
GTGCAGGGGAAGTTGCAATA+AGG + chr5_1:68216684-68216703 Msa0746170:CDS 50.0%
GAGAAGTGGAATGCCTGGAT+TGG + chr5_1:68216787-68216806 Msa0746170:CDS 50.0%
GCATCATTCTCACCCAATCC+AGG - chr5_1:68216803-68216822 None:intergenic 50.0%
ATTGGGTGAGAATGATGCCG+AGG + chr5_1:68216805-68216824 Msa0746170:CDS 50.0%
TTGGGTGAGAATGATGCCGA+GGG + chr5_1:68216806-68216825 Msa0746170:CDS 50.0%
GGTGGAATTGAGGCTAGTGA+AGG + chr5_1:68216833-68216852 Msa0746170:CDS 50.0%
TTCATCTTCTTCGTCGTCGC+TGG + chr5_1:68216871-68216890 Msa0746170:CDS 50.0%
!! TAGTGGACAGGTTGATGGTG+AGG + chr5_1:68216898-68216917 Msa0746170:CDS 50.0%
!! GCACTGACTTGCTTGTTCTG+AGG + chr5_1:68217280-68217299 Msa0746170:intron 50.0%
TGGTTGGATGTGCCTGCATT+TGG + chr5_1:68217323-68217342 Msa0746170:intron 50.0%
GGTTGGATGTGCCTGCATTT+GGG + chr5_1:68217324-68217343 Msa0746170:intron 50.0%
GTGCCTGCATTTGGGAATGA+TGG + chr5_1:68217332-68217351 Msa0746170:intron 50.0%
AGCGTTATGGTACGAGGATG+AGG - chr5_1:68218114-68218133 None:intergenic 50.0%
TCACTCAGCGTTATGGTACG+AGG - chr5_1:68218120-68218139 None:intergenic 50.0%
TTAGGAGGTAACATGGCCAG+TGG - chr5_1:68218261-68218280 None:intergenic 50.0%
!! CAGAAAGGTGTTGGGTTAGG+AGG - chr5_1:68218276-68218295 None:intergenic 50.0%
CTCCTAACCCAACACCTTTC+TGG + chr5_1:68218274-68218293 Msa0746170:CDS 50.0%
!! TGCCAGAAAGGTGTTGGGTT+AGG - chr5_1:68218279-68218298 None:intergenic 50.0%
ATGCATTCAGCATCTCACCC+GGG - chr5_1:68218759-68218778 None:intergenic 50.0%
CATGCATTCAGCATCTCACC+CGG - chr5_1:68218760-68218779 None:intergenic 50.0%
ACGGCATCCTGTCTACACAT+AGG - chr5_1:68218918-68218937 None:intergenic 50.0%
CCACCTACTGAGATGCAACT+TGG - chr5_1:68219232-68219251 None:intergenic 50.0%
CCAAGTTGCATCTCAGTAGG+TGG + chr5_1:68219229-68219248 Msa0746170:intron 50.0%
AGTAGGTGGGGTTGGATACA+TGG + chr5_1:68219243-68219262 Msa0746170:intron 50.0%
CCATCTAGTACAGTGTCCTC+CGG - chr5_1:68219498-68219517 None:intergenic 50.0%
GAGGACACTGTACTAGATGG+TGG + chr5_1:68219498-68219517 Msa0746170:intron 50.0%
AGGATCAGCCTTCTGGATGT+TGG + chr5_1:68219562-68219581 Msa0746170:intron 50.0%
AGGTTCAGCCAACATCCAGA+AGG - chr5_1:68219573-68219592 None:intergenic 50.0%
! CTCTTTTCGTCACTGACCAC+AGG + chr5_1:68220258-68220277 Msa0746170:CDS 50.0%
! CAGTTCCGTTGCTGTTGCAT+GGG + chr5_1:68220641-68220660 Msa0746170:intron 50.0%
! CATGTGTTATGCAAGGGTGC+TGG + chr5_1:68221259-68221278 Msa0746170:intron 50.0%
GAAACACAGGTTACTGCTGC+CGG + chr5_1:68221474-68221493 Msa0746170:intron 50.0%
! TTTCCCATGGTGGAGAACTG+AGG - chr5_1:68222114-68222133 None:intergenic 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG - chr5_1:68222286-68222305 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG - chr5_1:68222287-68222306 None:intergenic 50.0%
GATAGGGTTCCCTAGGTCTT+TGG + chr5_1:68222450-68222469 Msa0746170:intron 50.0%
ACCAAGGGTCCAAAGACCTA+GGG - chr5_1:68222462-68222481 None:intergenic 50.0%
GGTCGTTGACAATTGCCATG+TGG + chr5_1:68222479-68222498 Msa0746170:intron 50.0%
AGGTTCTCGACATCTCGTTG+AGG + chr5_1:68223208-68223227 Msa0746170:intron 50.0%
TCGACATCTCGTTGAGGCTT+AGG + chr5_1:68223214-68223233 Msa0746170:intron 50.0%
GACTGCTGGAATCATGCATC+GGG - chr5_1:68223337-68223356 None:intergenic 50.0%
! CTACTACACTCACTGACTGC+TGG - chr5_1:68223351-68223370 None:intergenic 50.0%
GAAACAGTTCCGAACTGGCT+TGG - chr5_1:68223522-68223541 None:intergenic 50.0%
CTTGCGAAACAGTTCCGAAC+TGG - chr5_1:68223527-68223546 None:intergenic 50.0%
! GATCTTCGCACCTTTGGAGA+TGG + chr5_1:68224203-68224222 Msa0746170:CDS 50.0%
!! CGATCTCAGGTTGATGCTGG+TGG + chr5_1:68216644-68216663 Msa0746170:CDS 55.0%
!! ATGCTGGTGGTGCTGTTGCT+GGG + chr5_1:68216657-68216676 Msa0746170:CDS 55.0%
CTGTTGCTGGGAGTAGTGCA+GGG + chr5_1:68216669-68216688 Msa0746170:CDS 55.0%
TGTTGCTGGGAGTAGTGCAG+GGG + chr5_1:68216670-68216689 Msa0746170:CDS 55.0%
GGTGAGAGAAGTGGAATGCC+TGG + chr5_1:68216782-68216801 Msa0746170:CDS 55.0%
CTCAATTCCACCACGACCCT+CGG - chr5_1:68216825-68216844 None:intergenic 55.0%
!! GCTGGTAGTGGACAGGTTGA+TGG + chr5_1:68216893-68216912 Msa0746170:CDS 55.0%
!! AGGTTGATGGTGAGGCTGCT+GGG + chr5_1:68216906-68216925 Msa0746170:CDS 55.0%
TGCATTCAGCATCTCACCCG+GGG - chr5_1:68218758-68218777 None:intergenic 55.0%
TGCATCTCAGTAGGTGGGGT+TGG + chr5_1:68219235-68219254 Msa0746170:intron 55.0%
ACTTAGAGGAGACGGCTGAC+CGG + chr5_1:68219476-68219495 Msa0746170:intron 55.0%
CCGGAGGACACTGTACTAGA+TGG + chr5_1:68219495-68219514 Msa0746170:intron 55.0%
!! CCAGACTGGTGTTGGCAACA+AGG - chr5_1:68220205-68220224 None:intergenic 55.0%
CCTTGTTGCCAACACCAGTC+TGG + chr5_1:68220202-68220221 Msa0746170:CDS 55.0%
TGCCAACACCAGTCTGGTAC+CGG + chr5_1:68220208-68220227 Msa0746170:CDS 55.0%
AACCGGTACCAGACTGGTGT+TGG - chr5_1:68220213-68220232 None:intergenic 55.0%
GGTCTATGCCACAGCAGAAC+AGG + chr5_1:68220470-68220489 Msa0746170:CDS 55.0%
CCATGCAACAGCAACGGAAC+TGG - chr5_1:68220643-68220662 None:intergenic 55.0%
! CCAGTTCCGTTGCTGTTGCA+TGG + chr5_1:68220640-68220659 Msa0746170:intron 55.0%
ATGGCCTCAGTTCTCCACCA+TGG + chr5_1:68222107-68222126 Msa0746170:intron 55.0%
TGGCCTCAGTTCTCCACCAT+GGG + chr5_1:68222108-68222127 Msa0746170:intron 55.0%
ACTAAGTGGGGACTTGGGGT+CGG - chr5_1:68222274-68222293 None:intergenic 55.0%
ACCCCAAGTCCCCACTTAGT+GGG + chr5_1:68222274-68222293 Msa0746170:intron 55.0%
TCCCACTAAGTGGGGACTTG+GGG - chr5_1:68222278-68222297 None:intergenic 55.0%
GTCCCACTAAGTGGGGACTT+GGG - chr5_1:68222279-68222298 None:intergenic 55.0%
TGTCCCACTAAGTGGGGACT+TGG - chr5_1:68222280-68222299 None:intergenic 55.0%
AGTCCCCACTTAGTGGGACA+AGG + chr5_1:68222280-68222299 Msa0746170:intron 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG - chr5_1:68222288-68222307 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG + chr5_1:68222285-68222304 Msa0746170:intron 55.0%
TCCCTAGGTCTTTGGACCCT+TGG + chr5_1:68222458-68222477 Msa0746170:intron 55.0%
GACCAAGGGTCCAAAGACCT+AGG - chr5_1:68222463-68222482 None:intergenic 55.0%
!! TGGACTGGCACCAACGAGAA+AGG - chr5_1:68223070-68223089 None:intergenic 55.0%
TTCTGCAAGTGCAGAGCCCT+TGG - chr5_1:68223141-68223160 None:intergenic 55.0%
TGCTCAGAGCTGCTTCTCGT+TGG - chr5_1:68223242-68223261 None:intergenic 55.0%
GAACTGGGACCAAGCCAGTT+CGG + chr5_1:68223510-68223529 Msa0746170:intron 55.0%
TTGCCCCCTATGCAGAGCAT+TGG + chr5_1:68224169-68224188 Msa0746170:CDS 55.0%
GCAGCTGATCTTCGCACCTT+TGG + chr5_1:68224197-68224216 Msa0746170:CDS 55.0%
!! GATGCTGGTGGTGCTGTTGC+TGG + chr5_1:68216656-68216675 Msa0746170:CDS 60.0%
GCTGTTGCTGGGAGTAGTGC+AGG + chr5_1:68216668-68216687 Msa0746170:CDS 60.0%
GAGAATGATGCCGAGGGTCG+TGG + chr5_1:68216812-68216831 Msa0746170:CDS 60.0%
AATGATGCCGAGGGTCGTGG+TGG + chr5_1:68216815-68216834 Msa0746170:CDS 60.0%
! CGAGGGTCGTGGTGGAATTG+AGG + chr5_1:68216823-68216842 Msa0746170:CDS 60.0%
TCTTCTTCGTCGTCGCTGGC+TGG + chr5_1:68216875-68216894 Msa0746170:CDS 60.0%
!! CAGGTTGATGGTGAGGCTGC+TGG + chr5_1:68216905-68216924 Msa0746170:CDS 60.0%
GATGGTGAGGCTGCTGGGAA+TGG + chr5_1:68216911-68216930 Msa0746170:CDS 60.0%
GACCCCAAGTCCCCACTTAG+TGG + chr5_1:68222273-68222292 Msa0746170:intron 60.0%
GCATCGGGATATCCCTCCAC+TGG - chr5_1:68223322-68223341 None:intergenic 60.0%
! TCGTCGTCGCTGGCTGGTAG+TGG + chr5_1:68216881-68216900 Msa0746170:CDS 65.0%
!! GTCGCTGGCTGGTAGTGGAC+AGG + chr5_1:68216886-68216905 Msa0746170:CDS 65.0%
TAGAGGAGACGGCTGACCGG+AGG + chr5_1:68219479-68219498 Msa0746170:intron 65.0%
GGGACTTGGGGTCGGCTACA+TGG - chr5_1:68222266-68222285 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68215888 68224540 68215888 ID=Msa0746170;Name=Msa0746170
chr5_1 mRNA 68215888 68224540 68215888 ID=Msa0746170-mRNA-1;Parent=Msa0746170;Name=Msa0746170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=366|1|1|1|0.66|0.6|10|284|481
chr5_1 exon 68215888 68216107 68215888 ID=Msa0746170-mRNA-1:exon:20317;Parent=Msa0746170-mRNA-1
chr5_1 exon 68216226 68216318 68216226 ID=Msa0746170-mRNA-1:exon:20318;Parent=Msa0746170-mRNA-1
chr5_1 exon 68216348 68217061 68216348 ID=Msa0746170-mRNA-1:exon:20319;Parent=Msa0746170-mRNA-1
chr5_1 exon 68217964 68218040 68217964 ID=Msa0746170-mRNA-1:exon:20320;Parent=Msa0746170-mRNA-1
chr5_1 exon 68218159 68218324 68218159 ID=Msa0746170-mRNA-1:exon:20321;Parent=Msa0746170-mRNA-1
chr5_1 exon 68219983 68220071 68219983 ID=Msa0746170-mRNA-1:exon:20322;Parent=Msa0746170-mRNA-1
chr5_1 exon 68220156 68220320 68220156 ID=Msa0746170-mRNA-1:exon:20323;Parent=Msa0746170-mRNA-1
chr5_1 exon 68220414 68220491 68220414 ID=Msa0746170-mRNA-1:exon:20324;Parent=Msa0746170-mRNA-1
chr5_1 exon 68221483 68221586 68221483 ID=Msa0746170-mRNA-1:exon:20325;Parent=Msa0746170-mRNA-1
chr5_1 exon 68224151 68224540 68224151 ID=Msa0746170-mRNA-1:exon:20326;Parent=Msa0746170-mRNA-1
chr5_1 five_prime_UTR 68215888 68216107 68215888 ID=Msa0746170-mRNA-1:five_prime_utr;Parent=Msa0746170-mRNA-1
chr5_1 five_prime_UTR 68216226 68216318 68216226 ID=Msa0746170-mRNA-1:five_prime_utr;Parent=Msa0746170-mRNA-1
chr5_1 five_prime_UTR 68216348 68216400 68216348 ID=Msa0746170-mRNA-1:five_prime_utr;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68216401 68217061 68216401 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68217964 68218040 68217964 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68218159 68218324 68218159 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68219983 68220071 68219983 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68220156 68220320 68220156 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68220414 68220491 68220414 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68221483 68221586 68221483 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 CDS 68224151 68224256 68224151 ID=Msa0746170-mRNA-1:cds;Parent=Msa0746170-mRNA-1
chr5_1 three_prime_UTR 68224257 68224540 68224257 ID=Msa0746170-mRNA-1:three_prime_utr;Parent=Msa0746170-mRNA-1
Gene Sequence

>Msa0746170

ATGGAAACTTTGGGTGGTAATTCATCATCATCACCATCATTATCATCAGCATCGTCGTCATCATCTTTTGGAGGGATTAATACTGATGATAACAATGTTGGTGTAACTTGGTATGGAATGAGGTTACCTGTTAACCCCTTTTTGTCACCGATTTCGTTTTTGTTGGATTATTCTGGAATTTTGCGTTCGAGTAATGATTCTGAGGGTATGATTGTCAACAACGGAGTTTCTGGTTCGGAGTTACGATCTCAGGTTGATGCTGGTGGTGCTGTTGCTGGGAGTAGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCCGGAGAGAATATTCATAATCAGGTTGGGGAAGTAGGTTATGATGATTGTGGTGAGGAGCTTATTGGTGAGAGAAGTGGAATGCCTGGATTGGGTGAGAATGATGCCGAGGGTCGTGGTGGAATTGAGGCTAGTGAAGGGGTTCCTCTTGTGTCTTCATCTTCTTCGTCGTCGCTGGCTGGTAGTGGACAGGTTGATGGTGAGGCTGCTGGGAATGGAACAGAAAATAACAGGGATTCGTCTTCTCATCAGAGATATGATATTCAGCTGGTTGCCAAGTGGATCGAGCAGATTCTTCCTTTCTCGCTTTTGTTGTTGGTTGTTTTCATTCGACAGCATTTACAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTACTTGCTGGTATCGCTTTTGCTTTCATTCTTCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGCCATGTTACCTCCTAACCCAACACCTTTCTGGCATGCAATATTCACGATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTTCTTATATATTACAAAAAGGGGAAAGGTCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTCTGGTACCGGTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCGTCACTGACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTGGTTGAGAAGGTCCAATGCTTTATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTACGGGGTCTATGCCACAGCAGAACAGGTTACTGCTGCCGGTGACCTATGTGCTATATGCCAAGAGAAGATGCATTCCCCTATCTTGTTGCGCTGCAAACACATTTTCTGCGAAGATTGTGTTTCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCCCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGCACCTTTGGAGATGGATCAACAAGTTTGTTCTTCCAGTTGTTTTAA

Protein sequence

>Msa0746170

METLGGNSSSSPSLSSASSSSSFGGINTDDNNVGVTWYGMRLPVNPFLSPISFLLDYSGILRSSNDSEGMIVNNGVSGSELRSQVDAGGAVAGSSAGEVAIRIIGAGENIHNQVGEVGYDDCGEELIGERSGMPGLGENDAEGRGGIEASEGVPLVSSSSSSSLAGSGQVDGEAAGNGTENNRDSSSHQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICIYWWYRNDDILYPLAMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF*