Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831470 | RDY10647.1 | 68.169 | 710 | 121 | 11 | 7 | 615 | 9 | 714 | 0.0 | 935 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831470 | sp|B9FSC8|OPR11_ORYSJ | 70.670 | 358 | 83 | 2 | 279 | 614 | 6 | 363 | 0.0 | 527 |
| Msa0831470 | sp|B9FSC8|OPR11_ORYSJ | 52.857 | 350 | 75 | 5 | 12 | 271 | 7 | 356 | 1.23e-115 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831470 | A0A371I6H0 | 68.169 | 710 | 121 | 11 | 7 | 615 | 9 | 714 | 0.0 | 935 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627350 | Msa0831470 | 0.801386 | 9.225352e-49 | -8.615850e-47 |
| Msa0812950 | Msa0831470 | 0.800730 | 1.256495e-48 | -8.615850e-47 |
| Msa0831470 | Msa0876360 | 0.810151 | 1.329106e-50 | -8.615850e-47 |
| Msa0831470 | Msa0915610 | 0.841591 | 4.331152e-58 | -8.615850e-47 |
| Msa0831470 | Msa0982270 | 0.807596 | 4.679841e-50 | -8.615850e-47 |
| Msa0831470 | Msa1229610 | 0.810028 | 1.412900e-50 | -8.615850e-47 |
| Msa0831470 | Msa1235400 | 0.811420 | 7.064500e-51 | -8.615850e-47 |
| Msa0831470 | Msa1272320 | 0.806782 | 6.960534e-50 | -8.615850e-47 |
| Msa0831470 | Msa1307740 | 0.819986 | 8.705968e-53 | -8.615850e-47 |
| Msa0831470 | Msa1310220 | 0.807372 | 5.219428e-50 | -8.615850e-47 |
| Msa0831470 | Msa1314770 | 0.811789 | 5.872293e-51 | -8.615850e-47 |
| Msa0831470 | Msa1335230 | 0.809925 | 1.486669e-50 | -8.615850e-47 |
| Msa0831470 | Msa1423820 | 0.813305 | 2.738303e-51 | -8.615850e-47 |
| Msa0389810 | Msa0831470 | 0.821511 | 3.884509e-53 | -8.615850e-47 |
| Msa0468130 | Msa0831470 | 0.812952 | 3.272854e-51 | -8.615850e-47 |
| Msa0530650 | Msa0831470 | 0.807695 | 4.457256e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831470 | MtrunA17_Chr5g0394771 | 88.889 | 369 | 25 | 1 | 263 | 615 | 23 | 391 | 0.0 | 673 |
| Msa0831470 | MtrunA17_Chr5g0394771 | 57.265 | 351 | 65 | 6 | 5 | 271 | 34 | 383 | 6.81e-124 | 371 |
| Msa0831470 | MtrunA17_Chr5g0394751 | 85.154 | 357 | 37 | 1 | 275 | 615 | 3 | 359 | 0.0 | 627 |
| Msa0831470 | MtrunA17_Chr5g0394751 | 58.239 | 352 | 62 | 6 | 4 | 271 | 1 | 351 | 6.57e-126 | 375 |
| Msa0831470 | MtrunA17_Chr5g0394861 | 81.918 | 365 | 42 | 3 | 275 | 615 | 7 | 371 | 0.0 | 598 |
| Msa0831470 | MtrunA17_Chr5g0394861 | 58.449 | 361 | 57 | 6 | 3 | 271 | 4 | 363 | 8.58e-131 | 388 |
| Msa0831470 | MtrunA17_Chr5g0394891 | 81.543 | 363 | 45 | 2 | 275 | 615 | 7 | 369 | 0.0 | 597 |
| Msa0831470 | MtrunA17_Chr5g0394891 | 58.496 | 359 | 58 | 5 | 3 | 271 | 4 | 361 | 1.36e-131 | 390 |
| Msa0831470 | MtrunA17_Chr5g0394811 | 76.309 | 363 | 64 | 2 | 275 | 615 | 116 | 478 | 0.0 | 571 |
| Msa0831470 | MtrunA17_Chr5g0394811 | 59.437 | 355 | 53 | 5 | 7 | 271 | 117 | 470 | 3.82e-130 | 390 |
| Msa0831470 | MtrunA17_Chr5g0394811 | 65.909 | 132 | 21 | 1 | 18 | 149 | 1 | 108 | 5.36e-48 | 175 |
| Msa0831470 | MtrunA17_Chr5g0394811 | 93.976 | 83 | 5 | 0 | 286 | 368 | 1 | 83 | 2.58e-45 | 167 |
| Msa0831470 | MtrunA17_Chr5g0394841 | 77.534 | 365 | 58 | 3 | 275 | 615 | 7 | 371 | 0.0 | 570 |
| Msa0831470 | MtrunA17_Chr5g0394841 | 56.787 | 361 | 63 | 8 | 3 | 271 | 4 | 363 | 1.50e-126 | 377 |
| Msa0831470 | MtrunA17_Chr5g0395841 | 73.770 | 366 | 74 | 3 | 271 | 614 | 5 | 370 | 0.0 | 554 |
| Msa0831470 | MtrunA17_Chr5g0395841 | 57.183 | 355 | 61 | 6 | 7 | 271 | 10 | 363 | 2.97e-124 | 371 |
| Msa0831470 | MtrunA17_Chr3g0144001 | 67.416 | 356 | 98 | 2 | 278 | 615 | 8 | 363 | 9.60e-172 | 493 |
| Msa0831470 | MtrunA17_Chr3g0144001 | 56.055 | 289 | 79 | 3 | 9 | 250 | 8 | 295 | 1.30e-105 | 323 |
| Msa0831470 | MtrunA17_Chr4g0070561 | 50.000 | 378 | 154 | 4 | 272 | 614 | 11 | 388 | 6.88e-126 | 377 |
| Msa0831470 | MtrunA17_Chr4g0070561 | 39.840 | 374 | 119 | 9 | 12 | 282 | 19 | 389 | 2.78e-72 | 238 |
| Msa0831470 | MtrunA17_Chr5g0394801 | 66.845 | 187 | 35 | 1 | 421 | 607 | 26 | 185 | 1.39e-79 | 251 |
| Msa0831470 | MtrunA17_Chr5g0394801 | 55.975 | 159 | 40 | 5 | 142 | 271 | 28 | 185 | 2.25e-41 | 150 |
| Msa0831470 | MtrunA17_Chr5g0394791 | 86.713 | 143 | 12 | 2 | 1 | 143 | 1 | 136 | 2.41e-78 | 246 |
| Msa0831470 | MtrunA17_Chr5g0394791 | 73.333 | 165 | 28 | 2 | 274 | 422 | 5 | 169 | 1.38e-76 | 242 |
| Msa0831470 | MtrunA17_Chr3g0130471 | 83.721 | 43 | 7 | 0 | 440 | 482 | 1 | 43 | 2.11e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0831470 | AT1G76690.1 | 71.111 | 360 | 82 | 2 | 278 | 615 | 12 | 371 | 0.0 | 524 |
| Msa0831470 | AT1G76690.1 | 52.571 | 350 | 76 | 6 | 12 | 271 | 14 | 363 | 9.83e-114 | 345 |
| Msa0831470 | AT1G76680.1 | 70.000 | 360 | 86 | 3 | 278 | 615 | 10 | 369 | 0.0 | 517 |
| Msa0831470 | AT1G76680.1 | 58.966 | 290 | 68 | 2 | 12 | 250 | 12 | 301 | 2.38e-115 | 349 |
| Msa0831470 | AT1G76680.2 | 65.455 | 385 | 86 | 4 | 278 | 615 | 10 | 394 | 4.26e-175 | 503 |
| Msa0831470 | AT1G76680.2 | 75.000 | 132 | 33 | 0 | 12 | 143 | 12 | 143 | 2.99e-64 | 217 |
| Msa0831470 | AT1G76680.2 | 58.730 | 126 | 36 | 1 | 141 | 250 | 201 | 326 | 1.27e-42 | 158 |
| Msa0831470 | AT1G09400.1 | 66.358 | 324 | 93 | 1 | 286 | 593 | 1 | 324 | 3.62e-157 | 454 |
| Msa0831470 | AT1G09400.1 | 53.237 | 278 | 85 | 3 | 18 | 250 | 1 | 278 | 8.12e-99 | 305 |
| Msa0831470 | AT1G09400.2 | 67.424 | 264 | 70 | 1 | 346 | 593 | 2 | 265 | 1.03e-126 | 374 |
| Msa0831470 | AT1G09400.2 | 50.459 | 218 | 63 | 3 | 78 | 250 | 2 | 219 | 3.08e-68 | 223 |
| Msa0831470 | AT2G06050.2 | 50.000 | 374 | 148 | 4 | 280 | 614 | 12 | 385 | 1.98e-124 | 373 |
| Msa0831470 | AT2G06050.2 | 37.150 | 393 | 133 | 10 | 1 | 284 | 1 | 388 | 7.87e-69 | 229 |
| Msa0831470 | AT2G06050.1 | 50.000 | 374 | 148 | 4 | 280 | 614 | 12 | 385 | 1.98e-124 | 373 |
| Msa0831470 | AT2G06050.1 | 37.150 | 393 | 133 | 10 | 1 | 284 | 1 | 388 | 7.87e-69 | 229 |
| Msa0831470 | AT2G06050.3 | 50.000 | 374 | 148 | 4 | 280 | 614 | 12 | 385 | 1.98e-124 | 373 |
| Msa0831470 | AT2G06050.3 | 37.150 | 393 | 133 | 10 | 1 | 284 | 1 | 388 | 7.87e-69 | 229 |
| Msa0831470 | AT1G17990.1 | 67.460 | 252 | 65 | 3 | 278 | 512 | 7 | 258 | 3.35e-118 | 352 |
| Msa0831470 | AT1G17990.1 | 55.118 | 254 | 65 | 5 | 9 | 215 | 7 | 258 | 6.12e-86 | 269 |
| Msa0831470 | AT1G18020.1 | 67.460 | 252 | 65 | 3 | 278 | 512 | 7 | 258 | 3.35e-118 | 352 |
| Msa0831470 | AT1G18020.1 | 55.118 | 254 | 65 | 5 | 9 | 215 | 7 | 258 | 6.12e-86 | 269 |
| Msa0831470 | AT1G17990.2 | 64.286 | 252 | 65 | 4 | 278 | 512 | 7 | 250 | 1.54e-109 | 330 |
| Msa0831470 | AT1G17990.2 | 51.969 | 254 | 65 | 6 | 9 | 215 | 7 | 250 | 2.34e-77 | 246 |
Find 165 sgRNAs with CRISPR-Local
Find 386 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCAATAGTTTCCTTTA+TGG | 0.094882 | 5_4:+4447818 | None:intergenic |
| CTACATTCTTCTGTCAAATT+TGG | 0.146007 | 5_4:-4448729 | Msa0831470:CDS |
| GCAAATCTCTTTGGCAAATC+TGG | 0.196300 | 5_4:+4443664 | None:intergenic |
| AACTAATCAAATGGAAATTA+TGG | 0.199927 | 5_4:-4449273 | Msa0831470:exon |
| CTTCTTCTTCTCTTTAATTC+CGG | 0.207015 | 5_4:+4443320 | None:intergenic |
| AGGGCAGACCTTGTTGTTTA+TGG | 0.231299 | 5_4:-4443706 | Msa0831470:CDS |
| TCAATGCTATAGCAGATAAT+AGG | 0.232603 | 5_4:-4443726 | Msa0831470:CDS |
| TATGAGAAAACCACCTTTAG+AGG | 0.233951 | 5_4:+4445342 | None:intergenic |
| GTTGGAAGGGTTTCTAATTC+TGG | 0.234366 | 5_4:-4448703 | Msa0831470:intron |
| TGCACTTCTGATCCAGTTCT+TGG | 0.240903 | 5_4:-4447579 | Msa0831470:intron |
| AGAAGAAGTGTATTCGAAAA+TGG | 0.263492 | 5_4:-4443305 | Msa0831470:three_prime_UTR |
| TCATCATTTCAGAGTTGTTT+TGG | 0.287756 | 5_4:-4445437 | Msa0831470:intron |
| CTCCTCTCAATAAATATAAC+AGG | 0.291526 | 5_4:-4443633 | Msa0831470:CDS |
| TATGATCTCATTCTTGTTAG+TGG | 0.293944 | 5_4:+4445412 | None:intergenic |
| GAGAAACAACTTACTAAATA+TGG | 0.298128 | 5_4:+4443504 | None:intergenic |
| CATTCTTCGAAATCTGAAAA+AGG | 0.307639 | 5_4:+4447927 | None:intergenic |
| GACTCAAATCCGAATGCATT+GGG | 0.313563 | 5_4:-4447900 | Msa0831470:CDS |
| ATCCAAACACACCAGGTATA+TGG | 0.318288 | 5_4:-4445282 | Msa0831470:CDS |
| TTCTTCTTCTCTTTAATTCC+GGG | 0.320473 | 5_4:+4443321 | None:intergenic |
| AATGGTACTTTCATGGTTGC+AGG | 0.322861 | 5_4:-4443772 | Msa0831470:CDS |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5_4:-4447867 | Msa0831470:CDS |
| GGCTTTCAATGGCACTTTCA+TGG | 0.337518 | 5_4:-4447757 | Msa0831470:intron |
| GGCTTTCAATGGTACTTTCA+TGG | 0.340526 | 5_4:-4443779 | Msa0831470:CDS |
| CTCATATGGTATAAAATATC+AGG | 0.341060 | 5_4:+4443362 | None:intergenic |
| GTCCATATACCTGGTGTGTT+TGG | 0.341076 | 5_4:+4445280 | None:intergenic |
| ATATGAGCTTTGTGTTTGAT+AGG | 0.349640 | 5_4:-4443346 | Msa0831470:three_prime_UTR |
| GCATTAAGAGCAAATCTCTT+TGG | 0.352480 | 5_4:+4443655 | None:intergenic |
| CTCATTGGCACCAGACTGTA+AGG | 0.356523 | 5_4:+4443805 | None:intergenic |
| TTTGATGGGGTTGAAATTCA+TGG | 0.358736 | 5_4:-4448110 | Msa0831470:CDS |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 5_4:-4443911 | Msa0831470:CDS |
| GATATCGGTGCTTGTCCATT+TGG | 0.366252 | 5_4:+4448490 | None:intergenic |
| TGATCCGGTGGTAGGTTATA+CGG | 0.367077 | 5_4:-4443593 | Msa0831470:CDS |
| TCCCCTAAACAGGTATAATA+TGG | 0.374123 | 5_4:-4447610 | Msa0831470:intron |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 5_4:+4443913 | None:intergenic |
| ACAGAAGAATGTAGCACCTT+TGG | 0.386994 | 5_4:+4448738 | None:intergenic |
| TTATCTTTCATGAATTGTTC+AGG | 0.388133 | 5_4:+4444093 | None:intergenic |
| TTGAATTTGCCCATCTTGTA+AGG | 0.388704 | 5_4:+4445540 | None:intergenic |
| TCATGAACCGCATCTACAAT+AGG | 0.389733 | 5_4:+4445232 | None:intergenic |
| GTTGAAATTCATGGGGCTAC+TGG | 0.390224 | 5_4:-4448101 | Msa0831470:CDS |
| GAGATAGGAGCAGATAAAGT+TGG | 0.397834 | 5_4:-4443985 | Msa0831470:CDS |
| GAATCGTTGTCGATTTCCTT+TGG | 0.398546 | 5_4:-4444031 | Msa0831470:CDS |
| TTGTATTTGCCCATCTTGTA+AGG | 0.400797 | 5_4:+4449221 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.401093 | 5_4:-4444066 | Msa0831470:CDS |
| TAAGGTGTAAGTAAAGGAAT+TGG | 0.408790 | 5_4:+4445558 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 5_4:+4447768 | None:intergenic |
| GATATTGGTGCTTGTCCATT+CGG | 0.411160 | 5_4:+4444442 | None:intergenic |
| TATCAAACACAAAGCTCATA+TGG | 0.418915 | 5_4:+4443348 | None:intergenic |
| CTGAAATCATTGACAATATG+AGG | 0.422538 | 5_4:+4444343 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.422831 | 5_4:+4443790 | None:intergenic |
| CACCAAGTTGTGCAGACATT+CGG | 0.423380 | 5_4:+4447791 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.423632 | 5_4:-4448044 | Msa0831470:CDS |
| TTCTGTCAAATTTGGCATGT+TGG | 0.430125 | 5_4:-4448721 | Msa0831470:CDS |
| GTTGTTGTATGATCTTTGTC+TGG | 0.432389 | 5_4:+4449076 | None:intergenic |
| AGGCCCTTTGAGAATAATAT+AGG | 0.432885 | 5_4:+4449033 | None:intergenic |
| GTCAAATTTGGCATGTTGGA+AGG | 0.433314 | 5_4:-4448717 | Msa0831470:CDS |
| CTTTCTGCATATTCTGCAAA+TGG | 0.436481 | 5_4:+4443949 | None:intergenic |
| TAATTGATTAACTAATCAAA+TGG | 0.437787 | 5_4:-4449282 | Msa0831470:exon |
| CAATGCTATAGCAGATAATA+GGG | 0.441084 | 5_4:-4443725 | Msa0831470:CDS |
| TTGATGGGGTTGAAATTCAT+GGG | 0.442458 | 5_4:-4448109 | Msa0831470:CDS |
| GAAGCAGTTGCGAATGAGAT+AGG | 0.444031 | 5_4:-4444000 | Msa0831470:CDS |
| GCAAATACAATCTATCTCAT+AGG | 0.446413 | 5_4:-4449208 | Msa0831470:intron |
| ATTCAAACACACCTGGCATA+TGG | 0.446612 | 5_4:-4448810 | Msa0831470:CDS |
| TAACCAGTTTATCAACCAAA+TGG | 0.449319 | 5_4:-4448505 | Msa0831470:intron |
| TTTACTTACACCTTACAAGA+TGG | 0.452565 | 5_4:-4445550 | Msa0831470:CDS |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 5_4:-4443922 | Msa0831470:CDS |
| GGAGGTTCCACTTCCAACCT+TGG | 0.453739 | 5_4:+4443525 | None:intergenic |
| ATAGAATACCATATTTATTG+AGG | 0.453888 | 5_4:+4447859 | None:intergenic |
| GACATTCTACATTTCTGATC+CGG | 0.456348 | 5_4:-4443608 | Msa0831470:CDS |
| GCAAATTCAATCTAGCTCAT+AGG | 0.460762 | 5_4:-4445527 | Msa0831470:intron |
| TTTCTCATAGCTGAAGCTAC+TGG | 0.465915 | 5_4:-4445328 | Msa0831470:CDS |
| GGAGTAAGAAGAAGTGGAAT+GGG | 0.467833 | 5_4:+4449242 | None:intergenic |
| TCTTCTTACTCCTTACAAGA+TGG | 0.468416 | 5_4:-4449231 | Msa0831470:CDS |
| AGGGCAGATCTTATTGCTTA+CGG | 0.471109 | 5_4:-4447684 | Msa0831470:intron |
| ATGTAATGCCCCAATGCATT+CGG | 0.477249 | 5_4:+4447891 | None:intergenic |
| GAATGCATTGGGGCATTACA+TGG | 0.477527 | 5_4:-4447889 | Msa0831470:CDS |
| AAGCAACTAAGACAACGAAT+TGG | 0.478951 | 5_4:-4448457 | Msa0831470:CDS |
| TCATATGGTAGAATCCATAA+AGG | 0.480967 | 5_4:-4447832 | Msa0831470:CDS |
| TGGTATTCTATATTGTCATA+TGG | 0.482929 | 5_4:-4447847 | Msa0831470:CDS |
| ATTTAGTTGAAATTAAATGA+TGG | 0.483806 | 5_4:+4443265 | None:intergenic |
| TTCTCATATCTGAACCTACC+GGG | 0.487847 | 5_4:-4448998 | Msa0831470:CDS |
| TCACGAAACCGAGACGACTA+AGG | 0.488520 | 5_4:-4444378 | Msa0831470:CDS |
| TCATCTGTCCTTAGTCGTCT+CGG | 0.489558 | 5_4:+4444370 | None:intergenic |
| CTTCTTACTCCTTACAAGAT+GGG | 0.489823 | 5_4:-4449230 | Msa0831470:CDS |
| TAGTCGGTATAACCAAGAAC+TGG | 0.490834 | 5_4:+4447567 | None:intergenic |
| AACCGAATGTCTGCACAACT+TGG | 0.491703 | 5_4:-4447793 | Msa0831470:CDS |
| CTGTCCTATATTATTCTCAA+AGG | 0.493412 | 5_4:-4449037 | Msa0831470:CDS |
| CAACTTGGTGCCAATGAGAA+AGG | 0.495045 | 5_4:-4447778 | Msa0831470:CDS |
| CAGTCTGGTGCCAATGAGAA+AGG | 0.498444 | 5_4:-4443800 | Msa0831470:CDS |
| TAGAATACCATATTTATTGA+GGG | 0.499116 | 5_4:+4447860 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5_4:-4444132 | Msa0831470:CDS |
| AGGAGTAAGAAGAAGTGGAA+TGG | 0.502126 | 5_4:+4449241 | None:intergenic |
| GTGGAACCAAGAATAAAATC+AGG | 0.503178 | 5_4:-4443847 | Msa0831470:CDS |
| GACTTGTCTGTAGAAGATAT+TGG | 0.505257 | 5_4:+4444427 | None:intergenic |
| TCAAATTTGGCATGTTGGAA+GGG | 0.505329 | 5_4:-4448716 | Msa0831470:CDS |
| GAATAATACTTGATAGCAAT+GGG | 0.505456 | 5_4:+4445373 | None:intergenic |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 5_4:-4443923 | Msa0831470:CDS |
| GATTGAAAGCCCTTACAGTC+TGG | 0.513661 | 5_4:-4443815 | Msa0831470:CDS |
| TGCTTGTCTGTAGAAGATAT+CGG | 0.515089 | 5_4:+4448475 | None:intergenic |
| TACTTGATAGCAATGGGTTG+AGG | 0.515275 | 5_4:+4445379 | None:intergenic |
| GGAGGCTATGACAGACAAGA+TGG | 0.516327 | 5_4:-4443751 | Msa0831470:CDS |
| GCAAGAAATGCTATTGAAGC+TGG | 0.517901 | 5_4:-4444313 | Msa0831470:intron |
| TTACTTACACCTTACAAGAT+GGG | 0.519268 | 5_4:-4445549 | Msa0831470:CDS |
| AGAATAATACTTGATAGCAA+TGG | 0.520679 | 5_4:+4445372 | None:intergenic |
| TGTCCTATATTATTCTCAAA+GGG | 0.524479 | 5_4:-4449036 | Msa0831470:CDS |
| CTTTGTGTTTGATAGGATCC+CGG | 0.526011 | 5_4:-4443339 | Msa0831470:three_prime_UTR |
| GTAGCATCCAAGGTTGGAAG+TGG | 0.526097 | 5_4:-4443532 | Msa0831470:three_prime_UTR |
| AGACTCAAATCCGAATGCAT+TGG | 0.531406 | 5_4:-4447901 | Msa0831470:CDS |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5_4:-4444123 | Msa0831470:CDS |
| TCCCTGTTATATTTATTGAG+AGG | 0.534017 | 5_4:+4443631 | None:intergenic |
| CTTTCATGAATTGCTCAAGT+AGG | 0.535013 | 5_4:+4448075 | None:intergenic |
| TTGTAAGGAGTAAGAAGAAG+TGG | 0.542932 | 5_4:+4449236 | None:intergenic |
| AATCAAATGGAAATTATGGT+TGG | 0.544947 | 5_4:-4449269 | Msa0831470:exon |
| TATTCTCAGAGAACCTCTAA+AGG | 0.545106 | 5_4:-4445355 | Msa0831470:CDS |
| ATGTTGTATTGTAGCATCCA+AGG | 0.550991 | 5_4:-4443542 | Msa0831470:three_prime_UTR |
| CAACTAAGACAACGAATTGG+AGG | 0.554386 | 5_4:-4448454 | Msa0831470:CDS |
| CTTCTCATATCTGAACCTAC+CGG | 0.558298 | 5_4:-4448999 | Msa0831470:CDS |
| ATCTTGTAAGGTGTAAGTAA+AGG | 0.563877 | 5_4:+4445552 | None:intergenic |
| TATAGGACAGCATGCTGTTG+AGG | 0.564762 | 5_4:+4449050 | None:intergenic |
| GCATGAACAGCATCCACGAT+AGG | 0.566839 | 5_4:+4448760 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.567256 | 5_4:-4447768 | Msa0831470:CDS |
| TATGAGAAGACCACCTTCAG+AGG | 0.570698 | 5_4:+4449013 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.571441 | 5_4:-4443790 | Msa0831470:CDS |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 5_4:-4443869 | Msa0831470:CDS |
| TATGATCTTTGTCTGGTCAA+CGG | 0.586166 | 5_4:+4449083 | None:intergenic |
| TCTCAAAGGGCCTCTGAAGG+TGG | 0.587655 | 5_4:-4449023 | Msa0831470:CDS |
| CGAAGGTATTCAAACACACC+TGG | 0.587734 | 5_4:-4448817 | Msa0831470:intron |
| TACATTTCTGATCCGGTGGT+AGG | 0.590489 | 5_4:-4443601 | Msa0831470:CDS |
| TGTATTGTAGCATCCAAGGT+TGG | 0.593017 | 5_4:-4443538 | Msa0831470:three_prime_UTR |
| TGCTCTTTAGTCCATATACC+TGG | 0.594651 | 5_4:+4445271 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5_4:+4444115 | None:intergenic |
| TCTCAGAGAACCTCTAAAGG+TGG | 0.598789 | 5_4:-4445352 | Msa0831470:CDS |
| AGACAACGAATTGGAGGCGA+TGG | 0.601167 | 5_4:-4448448 | Msa0831470:intron |
| CTTTCATGAATTGTTCAGGT+AGG | 0.601902 | 5_4:+4444097 | None:intergenic |
| TCATTGGCACCAGACTGTAA+GGG | 0.602205 | 5_4:+4443806 | None:intergenic |
| GGGGTCTCTGAAACTGCTCA+AGG | 0.606667 | 5_4:-4448978 | Msa0831470:CDS |
| GGTGTCTCTGACACTGCTCA+AGG | 0.607719 | 5_4:-4445307 | Msa0831470:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.613321 | 5_4:+4444015 | None:intergenic |
| ATTCTACATTTCTGATCCGG+TGG | 0.614919 | 5_4:-4443605 | Msa0831470:CDS |
| CAAGGCTATCCAAACACACC+AGG | 0.616594 | 5_4:-4445289 | Msa0831470:CDS |
| TATTCTCAAAGGGCCTCTGA+AGG | 0.617874 | 5_4:-4449026 | Msa0831470:CDS |
| GAGGCTATGACAGACAAGAT+GGG | 0.618192 | 5_4:-4443750 | Msa0831470:CDS |
| GGTACTTTCATGGTTGCAGG+AGG | 0.622008 | 5_4:-4443769 | Msa0831470:CDS |
| TTGAGCAGTTTCAGAGACCC+CGG | 0.624367 | 5_4:+4448980 | None:intergenic |
| CAAAAGAGCAAGTTGTAGCG+TGG | 0.624683 | 5_4:-4448786 | Msa0831470:CDS |
| TGATGGGGTTGAAATTCATG+GGG | 0.626342 | 5_4:-4448108 | Msa0831470:CDS |
| CTAAAGAGCATGTTGAGGCG+TGG | 0.628560 | 5_4:-4445258 | Msa0831470:CDS |
| GGGTCTCTGAAACTGCTCAA+GGG | 0.629621 | 5_4:-4448977 | Msa0831470:intron |
| CTAACAGTTTATCAACCGAA+TGG | 0.632307 | 5_4:-4444457 | Msa0831470:intron |
| GCAGTTTCAGAGACCCCGGT+AGG | 0.633600 | 5_4:+4448984 | None:intergenic |
| GTGGATGCTGTTCATGCCAA+AGG | 0.634883 | 5_4:-4448754 | Msa0831470:CDS |
| TTTGCAGAATATGCAGAAAG+CGG | 0.636317 | 5_4:-4443946 | Msa0831470:CDS |
| GTGGAAACCTATTGTAGATG+CGG | 0.642769 | 5_4:-4445239 | Msa0831470:CDS |
| GTAGATGCGGTTCATGACAA+AGG | 0.644665 | 5_4:-4445226 | Msa0831470:CDS |
| AAACAACTTACTAAATATGG+AGG | 0.645729 | 5_4:+4443507 | None:intergenic |
| TCCTCTCAATAAATATAACA+GGG | 0.647614 | 5_4:-4443632 | Msa0831470:CDS |
| GACAGAACAGATGAATATGG+CGG | 0.673922 | 5_4:-4444063 | Msa0831470:CDS |
| GACAGAACAGATGAATATGG+CGG | 0.676710 | 5_4:-4448041 | Msa0831470:CDS |
| ACTCAAATCCGAATGCATTG+GGG | 0.678015 | 5_4:-4447899 | Msa0831470:CDS |
| TCTCATATCTGAACCTACCG+GGG | 0.681660 | 5_4:-4448997 | Msa0831470:CDS |
| TGTAGCGTGGAAACCTATCG+TGG | 0.683679 | 5_4:-4448773 | Msa0831470:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 5_4:-4443866 | Msa0831470:CDS |
| ATGGACTAAAGAGCATGTTG+AGG | 0.685195 | 5_4:-4445263 | Msa0831470:CDS |
| TAGTCCGTATAACCTACCAC+CGG | 0.695454 | 5_4:+4443589 | None:intergenic |
| ACAAACGACCATAAACAACA+AGG | 0.713799 | 5_4:+4443698 | None:intergenic |
| GATGCGGTTCATGACAAAGG+CGG | 0.716742 | 5_4:-4445223 | Msa0831470:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATATTTTAAACAATTTTA+TGG | + | chr5_4:4443464-4443483 | None:intergenic | 10.0% |
| !! | TTTAGTATAAAAAATACAAT+TGG | - | chr5_4:4446080-4446099 | Msa0831470:intron | 10.0% |
| !! | ATCATTGTAATTTATTTAAA+TGG | - | chr5_4:4446992-4447011 | Msa0831470:intron | 10.0% |
| !! | TCATTGTAATTTATTTAAAT+GGG | - | chr5_4:4446993-4447012 | Msa0831470:intron | 10.0% |
| !!! | CTAAATTTTATTTTTATCAA+AGG | + | chr5_4:4447705-4447724 | None:intergenic | 10.0% |
| !! | TACAATAAAATAAAATGATT+TGG | - | chr5_4:4448043-4448062 | Msa0831470:CDS | 10.0% |
| !! | ACAATAAAATAAAATGATTT+GGG | - | chr5_4:4448044-4448063 | Msa0831470:CDS | 10.0% |
| !! | TAATTGATTAACTAATCAAA+TGG | - | chr5_4:4443323-4443342 | Msa0831470:three_prime_UTR | 15.0% |
| !! | TAAGTAATTCTAAATTCTAA+TGG | - | chr5_4:4443704-4443723 | Msa0831470:CDS | 15.0% |
| !!! | TTTTATTATATATTATGCGA+AGG | - | chr5_4:4443771-4443790 | Msa0831470:CDS | 15.0% |
| !!! | TTTTAATTTCAACTAAATCA+CGG | - | chr5_4:4445190-4445209 | Msa0831470:intron | 15.0% |
| !!! | ATTTTGATGTTGAAATAATA+TGG | + | chr5_4:4445851-4445870 | None:intergenic | 15.0% |
| !! | AATAAAAATAAACACGTAAA+GGG | + | chr5_4:4445952-4445971 | None:intergenic | 15.0% |
| !! | AAATAAAAATAAACACGTAA+AGG | + | chr5_4:4445953-4445972 | None:intergenic | 15.0% |
| !! | AAATTAATTAACCAATCAAA+TGG | - | chr5_4:4446237-4446256 | Msa0831470:intron | 15.0% |
| !!! | TTTTAATTTTAGAGTACTTT+TGG | - | chr5_4:4446434-4446453 | Msa0831470:intron | 15.0% |
| !!! | ATTTTTTTTCTTTCTTTTGA+TGG | + | chr5_4:4446938-4446957 | None:intergenic | 15.0% |
| !!! | GTATATTTTTCTATCAAATT+TGG | - | chr5_4:4447616-4447635 | Msa0831470:intron | 15.0% |
| !!! | ATTATTGATTATTACTATCT+CGG | - | chr5_4:4448079-4448098 | Msa0831470:CDS | 15.0% |
| !! | AACTAATCAAATGGAAATTA+TGG | - | chr5_4:4443332-4443351 | Msa0831470:three_prime_UTR | 20.0% |
| !!! | ACTCTAAAATCAAATCAATA+GGG | + | chr5_4:4443492-4443511 | None:intergenic | 20.0% |
| !!! | AACTCTAAAATCAAATCAAT+AGG | + | chr5_4:4443493-4443512 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTAGAGTTGTTT+TGG | - | chr5_4:4443497-4443516 | Msa0831470:three_prime_UTR | 20.0% |
| !! | GTTAAAGATAGTTATGAAAT+TGG | + | chr5_4:4443674-4443693 | None:intergenic | 20.0% |
| !!! | GATTTTTCAGTATTATTTCT+AGG | - | chr5_4:4443962-4443981 | Msa0831470:CDS | 20.0% |
| !! | TTAAAGTCATTGACAATATT+AGG | + | chr5_4:4444235-4444254 | None:intergenic | 20.0% |
| !!! | ATTGAAGCATTTTGAATTTT+CGG | + | chr5_4:4444316-4444335 | None:intergenic | 20.0% |
| !! | TAGAATACCATATTTATTGA+GGG | + | chr5_4:4444748-4444767 | None:intergenic | 20.0% |
| !! | ATAGAATACCATATTTATTG+AGG | + | chr5_4:4444749-4444768 | None:intergenic | 20.0% |
| !! | TGTTTATTCATTCAAGAAAA+GGG | + | chr5_4:4445064-4445083 | None:intergenic | 20.0% |
| !! | ATGTTTATTCATTCAAGAAA+AGG | + | chr5_4:4445065-4445084 | None:intergenic | 20.0% |
| !! | AAACAATTTGAATGAATGAA+TGG | - | chr5_4:4445501-4445520 | Msa0831470:intron | 20.0% |
| !! | TTTGAGAAAATGACATAATA+CGG | - | chr5_4:4445596-4445615 | Msa0831470:intron | 20.0% |
| !! | TTTCAACATCAAAATAATTG+AGG | - | chr5_4:4445856-4445875 | Msa0831470:intron | 20.0% |
| !! | ATGAACTTAAATCAATTGAT+AGG | + | chr5_4:4445914-4445933 | None:intergenic | 20.0% |
| !!! | ATTGGTAATAATACCAATAT+CGG | - | chr5_4:4446137-4446156 | Msa0831470:intron | 20.0% |
| !!! | TTTTTTTTTTTTGTGTGTGT+GGG | + | chr5_4:4446198-4446217 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGTGTGTG+TGG | + | chr5_4:4446199-4446218 | None:intergenic | 20.0% |
| !! | CTAATATATGTTTGAATTGA+TGG | - | chr5_4:4446642-4446661 | Msa0831470:intron | 20.0% |
| !! | TATTTAAATGGGTATCAAAA+TGG | - | chr5_4:4447004-4447023 | Msa0831470:intron | 20.0% |
| !! | AAATAGAATAGAAAGTGAAA+TGG | + | chr5_4:4447117-4447136 | None:intergenic | 20.0% |
| !!! | GTATATTTTTCTGTCAAATT+TGG | - | chr5_4:4447404-4447423 | Msa0831470:intron | 20.0% |
| !! | TTTAGAAAAAATAACACACA+GGG | + | chr5_4:4447848-4447867 | None:intergenic | 20.0% |
| !!! | TAAAATAAAATGATTTGGGT+TGG | - | chr5_4:4448048-4448067 | Msa0831470:CDS | 20.0% |
| ! | ACTGATACTGATATATAATG+AGG | + | chr5_4:4443300-4443319 | None:intergenic | 25.0% |
| ! | AATCAAATGGAAATTATGGT+TGG | - | chr5_4:4443336-4443355 | Msa0831470:three_prime_UTR | 25.0% |
| ! | TGTCCTATATTATTCTCAAA+GGG | - | chr5_4:4443569-4443588 | Msa0831470:exon | 25.0% |
| !!! | TTTTCAGTATTATTTCTAGG+TGG | - | chr5_4:4443965-4443984 | Msa0831470:CDS | 25.0% |
| !!! | TTTCAGTATTATTTCTAGGT+GGG | - | chr5_4:4443966-4443985 | Msa0831470:CDS | 25.0% |
| !!! | GTTATTTTGACTTCTATAAC+AGG | - | chr5_4:4444433-4444452 | Msa0831470:CDS | 25.0% |
| !! | AACATTTTGTGTACTAATTG+TGG | - | chr5_4:4444458-4444477 | Msa0831470:intron | 25.0% |
| ! | TTTCCAAAACAAATCTACAA+CGG | + | chr5_4:4444602-4444621 | None:intergenic | 25.0% |
| ! | TGGTATTCTATATTGTCATA+TGG | - | chr5_4:4444758-4444777 | Msa0831470:intron | 25.0% |
| ! | TTCATCAATAGTTTCCTTTA+TGG | + | chr5_4:4444790-4444809 | None:intergenic | 25.0% |
| ! | ACATAATACGGTGTAATTAT+AGG | - | chr5_4:4445608-4445627 | Msa0831470:intron | 25.0% |
| ! | AAATAATATGGCTATGAAAG+AGG | + | chr5_4:4445839-4445858 | None:intergenic | 25.0% |
| ! | GACATTGTATTATATGTGTA+AGG | + | chr5_4:4445892-4445911 | None:intergenic | 25.0% |
| ! | CATGTTAGTTATTGTTGTAT+TGG | - | chr5_4:4446119-4446138 | Msa0831470:intron | 25.0% |
| ! | AATCAAATGGAAATTATTCC+CGG | - | chr5_4:4446250-4446269 | Msa0831470:intron | 25.0% |
| ! | AGATAATCAAGATAACTACA+TGG | - | chr5_4:4446686-4446705 | Msa0831470:intron | 25.0% |
| ! | TGCAAAAAATGCATTTGATT+CGG | - | chr5_4:4446729-4446748 | Msa0831470:intron | 25.0% |
| ! | AGATAAAAAAACATGTGGTT+TGG | + | chr5_4:4446834-4446853 | None:intergenic | 25.0% |
| ! | GATGGATCTATATTTATACT+AGG | + | chr5_4:4446920-4446939 | None:intergenic | 25.0% |
| !! | GAATAATACTTGATAGCAAT+GGG | + | chr5_4:4447235-4447254 | None:intergenic | 25.0% |
| !! | AGAATAATACTTGATAGCAA+TGG | + | chr5_4:4447236-4447255 | None:intergenic | 25.0% |
| !! | CTTTAGAAAAAATAACACAC+AGG | + | chr5_4:4447849-4447868 | None:intergenic | 25.0% |
| ! | TAGACATCAATCAAATTACT+TGG | - | chr5_4:4448007-4448026 | Msa0831470:intron | 25.0% |
| ! | AGACATCAATCAAATTACTT+GGG | - | chr5_4:4448008-4448027 | Msa0831470:intron | 25.0% |
| ! | GATAAACTGTTAGATTAACA+AGG | + | chr5_4:4448141-4448160 | None:intergenic | 25.0% |
| ! | TTATCTTTCATGAATTGTTC+AGG | + | chr5_4:4448515-4448534 | None:intergenic | 25.0% |
| ! | TCCTCTCAATAAATATAACA+GGG | - | chr5_4:4448973-4448992 | Msa0831470:intron | 25.0% |
| !! | TGTTTTCTTCATTCAAGAAA+TGG | + | chr5_4:4449043-4449062 | None:intergenic | 25.0% |
| ! | AAACAACTTACTAAATATGG+AGG | + | chr5_4:4449101-4449120 | None:intergenic | 25.0% |
| ! | GAGAAACAACTTACTAAATA+TGG | + | chr5_4:4449104-4449123 | None:intergenic | 25.0% |
| ! | CTCATATGGTATAAAATATC+AGG | + | chr5_4:4449246-4449265 | None:intergenic | 25.0% |
| GCAAATACAATCTATCTCAT+AGG | - | chr5_4:4443397-4443416 | Msa0831470:three_prime_UTR | 30.0% | |
| GTTGAAGCAAGCATAATAAA+TGG | + | chr5_4:4443442-4443461 | None:intergenic | 30.0% | |
| CTGTCCTATATTATTCTCAA+AGG | - | chr5_4:4443568-4443587 | Msa0831470:exon | 30.0% | |
| CTACATTCTTCTGTCAAATT+TGG | - | chr5_4:4443876-4443895 | Msa0831470:CDS | 30.0% | |
| AACTGGTTAGAAGAATTGTA+TGG | + | chr5_4:4444089-4444108 | None:intergenic | 30.0% | |
| TAACCAGTTTATCAACCAAA+TGG | - | chr5_4:4444100-4444119 | Msa0831470:CDS | 30.0% | |
| ! | TTTTGAATTTTCGGAGAGAT+TGG | + | chr5_4:4444307-4444326 | None:intergenic | 30.0% |
| ! | CTTTAGTTTACGTCTTATTC+TGG | + | chr5_4:4444349-4444368 | None:intergenic | 30.0% |
| AATGTGAAATTTAGAGACGT+CGG | + | chr5_4:4444391-4444410 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | - | chr5_4:4444561-4444580 | Msa0831470:intron | 30.0% | |
| CATTCTTCGAAATCTGAAAA+AGG | + | chr5_4:4444681-4444700 | None:intergenic | 30.0% | |
| ! | TTTTCAGATTTCGAAGAATG+TGG | - | chr5_4:4444681-4444700 | Msa0831470:intron | 30.0% |
| GTTAATGCCCTCAATAAATA+TGG | - | chr5_4:4444738-4444757 | Msa0831470:intron | 30.0% | |
| TCATATGGTAGAATCCATAA+AGG | - | chr5_4:4444773-4444792 | Msa0831470:intron | 30.0% | |
| TCAATGCTATAGCTGAAAAT+AGG | - | chr5_4:4444901-4444920 | Msa0831470:intron | 30.0% | |
| CAATGCTATAGCTGAAAATA+GGG | - | chr5_4:4444902-4444921 | Msa0831470:intron | 30.0% | |
| TCCATATTATACCTGTTTAG+GGG | + | chr5_4:4444999-4445018 | None:intergenic | 30.0% | |
| CTCCATATTATACCTGTTTA+GGG | + | chr5_4:4445000-4445019 | None:intergenic | 30.0% | |
| TCTCCATATTATACCTGTTT+AGG | + | chr5_4:4445001-4445020 | None:intergenic | 30.0% | |
| GTGTGTAAAAGGCTATATAA+GGG | + | chr5_4:4445265-4445284 | None:intergenic | 30.0% | |
| AGTGTGTAAAAGGCTATATA+AGG | + | chr5_4:4445266-4445285 | None:intergenic | 30.0% | |
| ! | AGTGTAAGAAAGTGTGTAAA+AGG | + | chr5_4:4445276-4445295 | None:intergenic | 30.0% |
| AAACGACAACAAATCAATCT+AGG | - | chr5_4:4445376-4445395 | Msa0831470:CDS | 30.0% | |
| ! | TCTTTTGCAATCTAAGAGAA+AGG | + | chr5_4:4445425-4445444 | None:intergenic | 30.0% |
| TTTGAATGAATGAATGGTCT+AGG | - | chr5_4:4445507-4445526 | Msa0831470:intron | 30.0% | |
| TTACATCACATGAGTCAAAT+TGG | - | chr5_4:4445734-4445753 | Msa0831470:intron | 30.0% | |
| TCAAATTGGACTGCTAATTA+AGG | - | chr5_4:4445748-4445767 | Msa0831470:intron | 30.0% | |
| CAATAACTAACATGAACATG+AGG | + | chr5_4:4446113-4446132 | None:intergenic | 30.0% | |
| GAAAGAAAGAAAACCGATAT+TGG | + | chr5_4:4446153-4446172 | None:intergenic | 30.0% | |
| GGGAATAATTTCCATTTGAT+TGG | + | chr5_4:4446251-4446270 | None:intergenic | 30.0% | |
| ACCTATGTGCTATATTGAAT+TGG | + | chr5_4:4446308-4446327 | None:intergenic | 30.0% | |
| ! | TTTAAAATTTCCACTAACCC+CGG | - | chr5_4:4446376-4446395 | Msa0831470:intron | 30.0% |
| GTACTAATACTATCTTTGTC+CGG | + | chr5_4:4446469-4446488 | None:intergenic | 30.0% | |
| TACTTTCAAAGGTCCTTTAA+AGG | - | chr5_4:4446509-4446528 | Msa0831470:intron | 30.0% | |
| ATCAAGATAACTACATGGTT+CGG | - | chr5_4:4446691-4446710 | Msa0831470:intron | 30.0% | |
| CACTTTCTTACTTAACTACA+TGG | - | chr5_4:4446764-4446783 | Msa0831470:intron | 30.0% | |
| TCTTACTTAACTACATGGTT+TGG | - | chr5_4:4446769-4446788 | Msa0831470:intron | 30.0% | |
| !! | AAAAAACATGTGGTTTGGTT+TGG | + | chr5_4:4446829-4446848 | None:intergenic | 30.0% |
| !!! | CCACATGTTTTTTTATCTTG+CGG | - | chr5_4:4446836-4446855 | Msa0831470:intron | 30.0% |
| TAAATGGGTATCAAAATGGA+AGG | - | chr5_4:4447008-4447027 | Msa0831470:intron | 30.0% | |
| TAAGGTGTAAGTAAAGGAAT+TGG | + | chr5_4:4447050-4447069 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAAGTAA+AGG | + | chr5_4:4447056-4447075 | None:intergenic | 30.0% | |
| TTTACTTACACCTTACAAGA+TGG | - | chr5_4:4447055-4447074 | Msa0831470:intron | 30.0% | |
| TTACTTACACCTTACAAGAT+GGG | - | chr5_4:4447056-4447075 | Msa0831470:intron | 30.0% | |
| ! | TCATCATTTCAGAGTTGTTT+TGG | - | chr5_4:4447168-4447187 | Msa0831470:intron | 30.0% |
| TATGATCTCATTCTTGTTAG+TGG | + | chr5_4:4447196-4447215 | None:intergenic | 30.0% | |
| ! | TAAATAAAAGTGTGACCAGA+AGG | - | chr5_4:4447488-4447507 | Msa0831470:intron | 30.0% |
| ! | TTGATGATCTTAACCAATTG+AGG | + | chr5_4:4447532-4447551 | None:intergenic | 30.0% |
| ! | GGTAATGGTAAAATTATGCT+AGG | + | chr5_4:4447568-4447587 | None:intergenic | 30.0% |
| GTTATATTTGAGCTAGGTAA+TGG | + | chr5_4:4447583-4447602 | None:intergenic | 30.0% | |
| CTCAAATATAACATGCTCTA+AGG | - | chr5_4:4447591-4447610 | Msa0831470:CDS | 30.0% | |
| !! | AAATATAACATGCTCTAAGG+CGG | - | chr5_4:4447594-4447613 | Msa0831470:CDS | 30.0% |
| TTCTATCAAATTTGGCATGT+TGG | - | chr5_4:4447624-4447643 | Msa0831470:intron | 30.0% | |
| TTTGTTGCAGAAAGTAGTAA+TGG | - | chr5_4:4447904-4447923 | Msa0831470:CDS | 30.0% | |
| CGCTAATAACTTCAATAATG+TGG | + | chr5_4:4447959-4447978 | None:intergenic | 30.0% | |
| !! | AATAAAATGATTTGGGTTGG+AGG | - | chr5_4:4448051-4448070 | Msa0831470:CDS | 30.0% |
| CAAATAGAATACTCACTGTA+TGG | - | chr5_4:4448104-4448123 | Msa0831470:CDS | 30.0% | |
| AACTGTTAGATTAACAAGGA+AGG | + | chr5_4:4448137-4448156 | None:intergenic | 30.0% | |
| TTCAATGTGATGTAAATTGC+AGG | - | chr5_4:4448449-4448468 | Msa0831470:CDS | 30.0% | |
| !! | ATGTAAATTGCAGGTTTTGA+TGG | - | chr5_4:4448458-4448477 | Msa0831470:CDS | 30.0% |
| !! | TGTAAATTGCAGGTTTTGAT+GGG | - | chr5_4:4448459-4448478 | Msa0831470:CDS | 30.0% |
| AATGACAGAACAGATGAATA+TGG | - | chr5_4:4444561-4444580 | Msa0831470:intron | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | - | chr5_4:4448736-4448755 | Msa0831470:CDS | 30.0% | |
| ! | TCATCACCTGATTTTATTCT+TGG | + | chr5_4:4448767-4448786 | None:intergenic | 30.0% |
| TCAATGCTATAGCAGATAAT+AGG | - | chr5_4:4448879-4448898 | Msa0831470:intron | 30.0% | |
| CAATGCTATAGCAGATAATA+GGG | - | chr5_4:4448880-4448899 | Msa0831470:intron | 30.0% | |
| CTCCTCTCAATAAATATAAC+AGG | - | chr5_4:4448972-4448991 | Msa0831470:intron | 30.0% | |
| TCCCTGTTATATTTATTGAG+AGG | + | chr5_4:4448977-4448996 | None:intergenic | 30.0% | |
| GCTACAAAAACAAATTTGCA+AGG | + | chr5_4:4449126-4449145 | None:intergenic | 30.0% | |
| TATCAAACACAAAGCTCATA+TGG | + | chr5_4:4449260-4449279 | None:intergenic | 30.0% | |
| ! | ATATGAGCTTTGTGTTTGAT+AGG | - | chr5_4:4449259-4449278 | Msa0831470:CDS | 30.0% |
| TTCTTCTTCTCTTTAATTCC+GGG | + | chr5_4:4449287-4449306 | None:intergenic | 30.0% | |
| CTTCTTCTTCTCTTTAATTC+CGG | + | chr5_4:4449288-4449307 | None:intergenic | 30.0% | |
| ! | AGAAGAAGTGTATTCGAAAA+TGG | - | chr5_4:4449300-4449319 | Msa0831470:five_prime_UTR | 30.0% |
| TTGTAAGGAGTAAGAAGAAG+TGG | + | chr5_4:4443372-4443391 | None:intergenic | 35.0% | |
| TCTTCTTACTCCTTACAAGA+TGG | - | chr5_4:4443374-4443393 | Msa0831470:three_prime_UTR | 35.0% | |
| CTTCTTACTCCTTACAAGAT+GGG | - | chr5_4:4443375-4443394 | Msa0831470:three_prime_UTR | 35.0% | |
| TTGTATTTGCCCATCTTGTA+AGG | + | chr5_4:4443387-4443406 | None:intergenic | 35.0% | |
| TATGATCTTTGTCTGGTCAA+CGG | + | chr5_4:4443525-4443544 | None:intergenic | 35.0% | |
| GTTGTTGTATGATCTTTGTC+TGG | + | chr5_4:4443532-4443551 | None:intergenic | 35.0% | |
| ! | AGGCCCTTTGAGAATAATAT+AGG | + | chr5_4:4443575-4443594 | None:intergenic | 35.0% |
| TTCTGTCAAATTTGGCATGT+TGG | - | chr5_4:4443884-4443903 | Msa0831470:CDS | 35.0% | |
| TCAAATTTGGCATGTTGGAA+GGG | - | chr5_4:4443889-4443908 | Msa0831470:CDS | 35.0% | |
| !! | TGTCCATTTGGTTGATAAAC+TGG | + | chr5_4:4444106-4444125 | None:intergenic | 35.0% |
| TGCTTGTCTGTAGAAGATAT+CGG | + | chr5_4:4444133-4444152 | None:intergenic | 35.0% | |
| AAGCAACTAAGACAACGAAT+TGG | - | chr5_4:4444148-4444167 | Msa0831470:intron | 35.0% | |
| TTTGATGGGGTTGAAATTCA+TGG | - | chr5_4:4444495-4444514 | Msa0831470:intron | 35.0% | |
| TTGATGGGGTTGAAATTCAT+GGG | - | chr5_4:4444496-4444515 | Msa0831470:intron | 35.0% | |
| CTTTCATGAATTGCTCAAGT+AGG | + | chr5_4:4444533-4444552 | None:intergenic | 35.0% | |
| !! | GAACCGTTGTAGATTTGTTT+TGG | - | chr5_4:4444596-4444615 | Msa0831470:intron | 35.0% |
| GAAGCTGTTGTAAATGAGAT+AGG | - | chr5_4:4444627-4444646 | Msa0831470:intron | 35.0% | |
| TGTTGTAAATGAGATAGGTG+CGG | - | chr5_4:4444632-4444651 | Msa0831470:intron | 35.0% | |
| GCAAATCTCTTTGTCAAATC+TGG | + | chr5_4:4444966-4444985 | None:intergenic | 35.0% | |
| TCCCCTAAACAGGTATAATA+TGG | - | chr5_4:4444995-4445014 | Msa0831470:intron | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | + | chr5_4:4445057-4445076 | None:intergenic | 35.0% | |
| TGTTGTACTTGTAGCATGTA+AGG | - | chr5_4:4445086-4445105 | Msa0831470:intron | 35.0% | |
| GTTGTACTTGTAGCATGTAA+GGG | - | chr5_4:4445087-4445106 | Msa0831470:intron | 35.0% | |
| CCAACTTTATTGCACAAATG+TGG | + | chr5_4:4445116-4445135 | None:intergenic | 35.0% | |
| CCACATTTGTGCAATAAAGT+TGG | - | chr5_4:4445113-4445132 | Msa0831470:intron | 35.0% | |
| CAAATGCATGTTTCAATGTG+TGG | + | chr5_4:4445241-4445260 | None:intergenic | 35.0% | |
| CACACATTGAAACATGCATT+TGG | - | chr5_4:4445239-4445258 | Msa0831470:CDS | 35.0% | |
| ! | GTTTAGGGGAGGATTTTATT+AGG | + | chr5_4:4445326-4445345 | None:intergenic | 35.0% |
| TATAGCAGTGTTCAGTTTAG+GGG | + | chr5_4:4445340-4445359 | None:intergenic | 35.0% | |
| CTATAGCAGTGTTCAGTTTA+GGG | + | chr5_4:4445341-4445360 | None:intergenic | 35.0% | |
| TGCAAAAGACTAAGCTTCAA+AGG | - | chr5_4:4445436-4445455 | Msa0831470:intron | 35.0% | |
| AAAGGCTTAGACATTATGTC+TGG | - | chr5_4:4445454-4445473 | Msa0831470:intron | 35.0% | |
| ! | TGTAATTATAGGTGTCGTGT+CGG | - | chr5_4:4445619-4445638 | Msa0831470:intron | 35.0% |
| TAATATGGCTATGAAAGAGG+TGG | + | chr5_4:4445836-4445855 | None:intergenic | 35.0% | |
| GTGTGGGAATAAACTGATAT+TGG | + | chr5_4:4446182-4446201 | None:intergenic | 35.0% | |
| CTTGTAAGAAGAAGAGGAAT+GGG | + | chr5_4:4446280-4446299 | None:intergenic | 35.0% | |
| TCTTGTAAGAAGAAGAGGAA+TGG | + | chr5_4:4446281-4446300 | None:intergenic | 35.0% | |
| TTCCTCTTCTTCTTACAAGA+TGG | - | chr5_4:4446281-4446300 | Msa0831470:intron | 35.0% | |
| TCCTCTTCTTCTTACAAGAT+GGG | - | chr5_4:4446282-4446301 | Msa0831470:intron | 35.0% | |
| GCCAATTCAATATAGCACAT+AGG | - | chr5_4:4446304-4446323 | Msa0831470:intron | 35.0% | |
| ! | CCTTTGAAAGTAATAGAGGA+TGG | + | chr5_4:4446501-4446520 | None:intergenic | 35.0% |
| CCATCCTCTATTACTTTCAA+AGG | - | chr5_4:4446498-4446517 | Msa0831470:intron | 35.0% | |
| ! | AGGACCTTTGAAAGTAATAG+AGG | + | chr5_4:4446505-4446524 | None:intergenic | 35.0% |
| ! | TTTCAAAGGTCCTTTAAAGG+AGG | - | chr5_4:4446512-4446531 | Msa0831470:intron | 35.0% |
| TATGAGAAGACCTCCTTTAA+AGG | + | chr5_4:4446525-4446544 | None:intergenic | 35.0% | |
| !! | CTTAACTACATGGTTTGGTT+TGG | - | chr5_4:4446774-4446793 | Msa0831470:intron | 35.0% |
| CCGCAAGATAAAAAAACATG+TGG | + | chr5_4:4446839-4446858 | None:intergenic | 35.0% | |
| ! | TACTTTGCCTTTTGAACTGT+TGG | - | chr5_4:4446967-4446986 | Msa0831470:intron | 35.0% |
| ATGATCACCAACAGTTCAAA+AGG | + | chr5_4:4446977-4446996 | None:intergenic | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | + | chr5_4:4447068-4447087 | None:intergenic | 35.0% | |
| ! | GCAAATTCAATCTAGCTCAT+AGG | - | chr5_4:4447078-4447097 | Msa0831470:intron | 35.0% |
| TATTCTCAGAGAACCTCTAA+AGG | - | chr5_4:4447250-4447269 | Msa0831470:intron | 35.0% | |
| TATGAGAAAACCACCTTTAG+AGG | + | chr5_4:4447266-4447285 | None:intergenic | 35.0% | |
| GAGCATGTTATATTTGAGCT+AGG | + | chr5_4:4447589-4447608 | None:intergenic | 35.0% | |
| GTTGGAAGAGTTTCAAATTC+AGG | - | chr5_4:4447642-4447661 | Msa0831470:intron | 35.0% | |
| CTAACAGTTTATCAACCGAA+TGG | - | chr5_4:4448148-4448167 | Msa0831470:intron | 35.0% | |
| GACTTGTCTGTAGAAGATAT+TGG | + | chr5_4:4448181-4448200 | None:intergenic | 35.0% | |
| ATTGAAGCTGGTAAGTTTAC+TGG | - | chr5_4:4448304-4448323 | Msa0831470:intron | 35.0% | |
| !! | GGTAAGTTTACTGGTCTTTA+CGG | - | chr5_4:4448313-4448332 | Msa0831470:intron | 35.0% |
| !! | GTAAATTGCAGGTTTTGATG+GGG | - | chr5_4:4448460-4448479 | Msa0831470:CDS | 35.0% |
| CTTTCATGAATTGTTCAGGT+AGG | + | chr5_4:4448511-4448530 | None:intergenic | 35.0% | |
| CTTTCTGCATATTCTGCAAA+TGG | + | chr5_4:4448659-4448678 | None:intergenic | 35.0% | |
| TTTGCAGAATATGCAGAAAG+CGG | - | chr5_4:4448659-4448678 | Msa0831470:intron | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | - | chr5_4:4448682-4448701 | Msa0831470:intron | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | - | chr5_4:4448683-4448702 | Msa0831470:intron | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | + | chr5_4:4448695-4448714 | None:intergenic | 35.0% | |
| AAATGCATTGGGACTTCATA+TGG | - | chr5_4:4448694-4448713 | Msa0831470:intron | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | - | chr5_4:4448739-4448758 | Msa0831470:CDS | 35.0% | |
| GTGGAACCAAGAATAAAATC+AGG | - | chr5_4:4448758-4448777 | Msa0831470:CDS | 35.0% | |
| ACAAACGACCATAAACAACA+AGG | + | chr5_4:4448910-4448929 | None:intergenic | 35.0% | |
| GCATTAAGAGCAAATCTCTT+TGG | + | chr5_4:4448953-4448972 | None:intergenic | 35.0% | |
| GACATTCTACATTTCTGATC+CGG | - | chr5_4:4448997-4449016 | Msa0831470:CDS | 35.0% | |
| ATGTTGTATTGTAGCATCCA+AGG | - | chr5_4:4449063-4449082 | Msa0831470:CDS | 35.0% | |
| GGAGTAAGAAGAAGTGGAAT+GGG | + | chr5_4:4443366-4443385 | None:intergenic | 40.0% | |
| AGGAGTAAGAAGAAGTGGAA+TGG | + | chr5_4:4443367-4443386 | None:intergenic | 40.0% | |
| CTTCTCATATCTGAACCTAC+CGG | - | chr5_4:4443606-4443625 | Msa0831470:CDS | 40.0% | |
| TTCTCATATCTGAACCTACC+GGG | - | chr5_4:4443607-4443626 | Msa0831470:CDS | 40.0% | |
| ATTCAAACACACCTGGCATA+TGG | - | chr5_4:4443795-4443814 | Msa0831470:CDS | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | + | chr5_4:4443870-4443889 | None:intergenic | 40.0% | |
| GTCAAATTTGGCATGTTGGA+AGG | - | chr5_4:4443888-4443907 | Msa0831470:CDS | 40.0% | |
| GTTGGAAGGGTTTCTAATTC+TGG | - | chr5_4:4443902-4443921 | Msa0831470:CDS | 40.0% | |
| CAACTAAGACAACGAATTGG+AGG | - | chr5_4:4444151-4444170 | Msa0831470:intron | 40.0% | |
| TATCACAATTCACACAACCG+AGG | - | chr5_4:4444188-4444207 | Msa0831470:intron | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | - | chr5_4:4444263-4444282 | Msa0831470:intron | 40.0% | |
| !! | TGCGCATTGTAGGTTTTGAT+GGG | - | chr5_4:4444481-4444500 | Msa0831470:intron | 40.0% |
| TGATGGGGTTGAAATTCATG+GGG | - | chr5_4:4444497-4444516 | Msa0831470:intron | 40.0% | |
| GACAGAACAGATGAATATGG+CGG | - | chr5_4:4444564-4444583 | Msa0831470:intron | 40.0% | |
| AGACTCAAATCCGAATGCAT+TGG | - | chr5_4:4444704-4444723 | Msa0831470:intron | 40.0% | |
| GACTCAAATCCGAATGCATT+GGG | - | chr5_4:4444705-4444724 | Msa0831470:intron | 40.0% | |
| ACTCAAATCCGAATGCATTG+GGG | - | chr5_4:4444706-4444725 | Msa0831470:intron | 40.0% | |
| ATGTAATGCCCCAATGCATT+CGG | + | chr5_4:4444717-4444736 | None:intergenic | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | + | chr5_4:4444840-4444859 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | - | chr5_4:4444837-4444856 | Msa0831470:intron | 40.0% | |
| AATGGCACTTTCATGGTTAC+AGG | - | chr5_4:4444855-4444874 | Msa0831470:intron | 40.0% | |
| GAGGCTATGAAAGACAAGAT+GGG | - | chr5_4:4444877-4444896 | Msa0831470:intron | 40.0% | |
| AGGGCAGATCTTATTGCTTA+CGG | - | chr5_4:4444921-4444940 | Msa0831470:intron | 40.0% | |
| TAGTCGGTATAACCAAGAAC+TGG | + | chr5_4:4445041-4445060 | None:intergenic | 40.0% | |
| GTTTCAATGTGTGGTGAGTT+AGG | + | chr5_4:4445232-4445251 | None:intergenic | 40.0% | |
| GCTATAGCAGTGTTCAGTTT+AGG | + | chr5_4:4445342-4445361 | None:intergenic | 40.0% | |
| GAATGAATGAATGGTCTAGG+AGG | - | chr5_4:4445510-4445529 | Msa0831470:intron | 40.0% | |
| ATTATTATCCGTGTCGTGTC+CGG | + | chr5_4:4445577-4445596 | None:intergenic | 40.0% | |
| GCACAGACATTCCTTGAATT+AGG | + | chr5_4:4445675-4445694 | None:intergenic | 40.0% | |
| GGACTGCTAATTAAGGTCAA+AGG | - | chr5_4:4445755-4445774 | Msa0831470:intron | 40.0% | |
| TACTATCTTTGTCCGGTCAA+TGG | + | chr5_4:4446462-4446481 | None:intergenic | 40.0% | |
| ! | GTTTGAAGCAAAGCATGAAG+AGG | + | chr5_4:4446599-4446618 | None:intergenic | 40.0% |
| ! | AGATAACTACATGGTTCGGA+TGG | - | chr5_4:4446695-4446714 | Msa0831470:intron | 40.0% |
| !! | CTACATGGTTTGGTTTGGTT+CGG | - | chr5_4:4446779-4446798 | Msa0831470:intron | 40.0% |
| !! | ACATGTGGTTTGGTTTGGTT+CGG | + | chr5_4:4446824-4446843 | None:intergenic | 40.0% |
| !! | TACTTGATAGCAATGGGTTG+AGG | + | chr5_4:4447229-4447248 | None:intergenic | 40.0% |
| TTTCTCATAGCTGAAGCTAC+TGG | - | chr5_4:4447277-4447296 | Msa0831470:intron | 40.0% | |
| ATCCAAACACACCAGGTATA+TGG | - | chr5_4:4447323-4447342 | Msa0831470:intron | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | + | chr5_4:4447337-4447356 | None:intergenic | 40.0% | |
| ! | ATGGACTAAAGAGCATGTTG+AGG | - | chr5_4:4447342-4447361 | Msa0831470:intron | 40.0% |
| GTGGAAACCTATTGTAGATG+CGG | - | chr5_4:4447366-4447385 | Msa0831470:intron | 40.0% | |
| TCATGAACCGCATCTACAAT+AGG | + | chr5_4:4447376-4447395 | None:intergenic | 40.0% | |
| TTCTGTCAAATTTGGCATGC+TGG | - | chr5_4:4447412-4447431 | Msa0831470:intron | 40.0% | |
| TCAAATTTGGCATGCTGGAA+GGG | - | chr5_4:4447417-4447436 | Msa0831470:intron | 40.0% | |
| ACACAAATGGTTAGACCTTC+TGG | + | chr5_4:4447506-4447525 | None:intergenic | 40.0% | |
| CCAATTGAGGTTGACACAAA+TGG | + | chr5_4:4447519-4447538 | None:intergenic | 40.0% | |
| CCATTTGTGTCAACCTCAAT+TGG | - | chr5_4:4447516-4447535 | Msa0831470:intron | 40.0% | |
| ACACACTTCCAATTCACAAC+TGG | - | chr5_4:4447733-4447752 | Msa0831470:intron | 40.0% | |
| CAATTCACAACTGGTGCAAA+CGG | - | chr5_4:4447742-4447761 | Msa0831470:intron | 40.0% | |
| AGCTGATGATCTGAACCAAT+CGG | + | chr5_4:4447792-4447811 | None:intergenic | 40.0% | |
| ACGTGACACAAGCTACAAAT+AGG | - | chr5_4:4447930-4447949 | Msa0831470:CDS | 40.0% | |
| ! | GATATTGGTGCTTGTCCATT+CGG | + | chr5_4:4448166-4448185 | None:intergenic | 40.0% |
| GCAAGAAATGCTATTGAAGC+TGG | - | chr5_4:4444263-4444282 | Msa0831470:intron | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | - | chr5_4:4448473-4448492 | Msa0831470:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+CGG | - | chr5_4:4444564-4444583 | Msa0831470:intron | 40.0% | |
| !! | GAATCGTTGTCGATTTCCTT+TGG | - | chr5_4:4448574-4448593 | Msa0831470:intron | 40.0% |
| ACTGCTTCAACAACTTCCAA+AGG | + | chr5_4:4448593-4448612 | None:intergenic | 40.0% | |
| GAGATAGGAGCAGATAAAGT+TGG | - | chr5_4:4448620-4448639 | Msa0831470:intron | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | + | chr5_4:4444840-4444859 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | - | chr5_4:4444837-4444856 | Msa0831470:intron | 40.0% | |
| GGCTTTCAATGGTACTTTCA+TGG | - | chr5_4:4448826-4448845 | Msa0831470:intron | 40.0% | |
| AATGGTACTTTCATGGTTGC+AGG | - | chr5_4:4448833-4448852 | Msa0831470:intron | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | + | chr5_4:4448944-4448963 | None:intergenic | 40.0% | |
| ATTCTACATTTCTGATCCGG+TGG | - | chr5_4:4449000-4449019 | Msa0831470:CDS | 40.0% | |
| TGTATTGTAGCATCCAAGGT+TGG | - | chr5_4:4449067-4449086 | Msa0831470:CDS | 40.0% | |
| CTTTGTGTTTGATAGGATCC+CGG | - | chr5_4:4449266-4449285 | Msa0831470:CDS | 40.0% | |
| TATAGGACAGCATGCTGTTG+AGG | + | chr5_4:4443558-4443577 | None:intergenic | 45.0% | |
| TATTCTCAAAGGGCCTCTGA+AGG | - | chr5_4:4443579-4443598 | Msa0831470:CDS | 45.0% | |
| TATGAGAAGACCACCTTCAG+AGG | + | chr5_4:4443595-4443614 | None:intergenic | 45.0% | |
| TCTCATATCTGAACCTACCG+GGG | - | chr5_4:4443608-4443627 | Msa0831470:CDS | 45.0% | |
| !! | CGAAGGTATTCAAACACACC+TGG | - | chr5_4:4443788-4443807 | Msa0831470:CDS | 45.0% |
| ! | TGCTCTTTTGTCCATATGCC+AGG | + | chr5_4:4443809-4443828 | None:intergenic | 45.0% |
| CAAAAGAGCAAGTTGTAGCG+TGG | - | chr5_4:4443819-4443838 | Msa0831470:CDS | 45.0% | |
| ! | GATATCGGTGCTTGTCCATT+TGG | + | chr5_4:4444118-4444137 | None:intergenic | 45.0% |
| TCTTCTGTTCTTAGCCTCCT+CGG | + | chr5_4:4444208-4444227 | None:intergenic | 45.0% | |
| CTAATTGTGGTGCGCATTGT+AGG | - | chr5_4:4444471-4444490 | Msa0831470:intron | 45.0% | |
| !! | GTGCGCATTGTAGGTTTTGA+TGG | - | chr5_4:4444480-4444499 | Msa0831470:intron | 45.0% |
| !! | GCGCATTGTAGGTTTTGATG+GGG | - | chr5_4:4444482-4444501 | Msa0831470:intron | 45.0% |
| GTTGAAATTCATGGGGCTAC+TGG | - | chr5_4:4444504-4444523 | Msa0831470:intron | 45.0% | |
| GAGATAGGTGCGGAAAAAGT+TGG | - | chr5_4:4444642-4444661 | Msa0831470:intron | 45.0% | |
| ! | GAATGCATTGGGGCATTACA+TGG | - | chr5_4:4444716-4444735 | Msa0831470:intron | 45.0% |
| AACCGAATGTCTGCACAACT+TGG | - | chr5_4:4444812-4444831 | Msa0831470:intron | 45.0% | |
| CACCAAGTTGTGCAGACATT+CGG | + | chr5_4:4444817-4444836 | None:intergenic | 45.0% | |
| !! | CAACTTGGTGCCAATGAGAA+AGG | - | chr5_4:4444827-4444846 | Msa0831470:intron | 45.0% |
| GGCTTTCAATGGCACTTTCA+TGG | - | chr5_4:4444848-4444867 | Msa0831470:intron | 45.0% | |
| GGAGGCTATGAAAGACAAGA+TGG | - | chr5_4:4444876-4444895 | Msa0831470:intron | 45.0% | |
| CACTTAATGCTCCCCTAAAC+AGG | - | chr5_4:4444985-4445004 | Msa0831470:intron | 45.0% | |
| TGCACTTCTGATCCAGTTCT+TGG | - | chr5_4:4445026-4445045 | Msa0831470:intron | 45.0% | |
| GTACTTGTAGCATGTAAGGG+TGG | - | chr5_4:4445090-4445109 | Msa0831470:intron | 45.0% | |
| ATGAAGCACGGACATAGACA+CGG | - | chr5_4:4445548-4445567 | Msa0831470:CDS | 45.0% | |
| ! | GCAAGAGCCAAGAAGCATAA+AGG | - | chr5_4:4445806-4445825 | Msa0831470:intron | 45.0% |
| ATGGCTATGAAAGAGGTGGT+GGG | + | chr5_4:4445832-4445851 | None:intergenic | 45.0% | |
| TATGGCTATGAAAGAGGTGG+TGG | + | chr5_4:4445833-4445852 | None:intergenic | 45.0% | |
| GCCCATCTTGTAAGAAGAAG+AGG | + | chr5_4:4446286-4446305 | None:intergenic | 45.0% | |
| ATAGACACACATGACTCTCC+GGG | + | chr5_4:4446397-4446416 | None:intergenic | 45.0% | |
| CATAGACACACATGACTCTC+CGG | + | chr5_4:4446398-4446417 | None:intergenic | 45.0% | |
| ! | GTACTTTTGGCACCATTGAC+CGG | - | chr5_4:4446447-4446466 | Msa0831470:intron | 45.0% |
| ! | TGCGGTTTAGTTCAGTTTCG+AGG | + | chr5_4:4446878-4446897 | None:intergenic | 45.0% |
| TATACTAGGTGTTCGCAGTG+CGG | + | chr5_4:4446906-4446925 | None:intergenic | 45.0% | |
| ! | TCTCAGAGAACCTCTAAAGG+TGG | - | chr5_4:4447253-4447272 | Msa0831470:intron | 45.0% |
| GTCCATATACCTGGTGTGTT+TGG | + | chr5_4:4447328-4447347 | None:intergenic | 45.0% | |
| GTAGATGCGGTTCATGACAA+AGG | - | chr5_4:4447379-4447398 | Msa0831470:intron | 45.0% | |
| GTCAAATTTGGCATGCTGGA+AGG | - | chr5_4:4447416-4447435 | Msa0831470:intron | 45.0% | |
| GCTGGAAGGGTTTCAAATTC+AGG | - | chr5_4:4447430-4447449 | Msa0831470:intron | 45.0% | |
| CGTTTGCACCAGTTGTGAAT+TGG | + | chr5_4:4447744-4447763 | None:intergenic | 45.0% | |
| TGATCTGAACCAATCGGTGT+AGG | + | chr5_4:4447786-4447805 | None:intergenic | 45.0% | |
| TCATCTGTCCTTAGTCGTCT+CGG | + | chr5_4:4448238-4448257 | None:intergenic | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | - | chr5_4:4448482-4448501 | Msa0831470:CDS | 45.0% | |
| GAAGCAGTTGCGAATGAGAT+AGG | - | chr5_4:4448605-4448624 | Msa0831470:intron | 45.0% | |
| GATTGAAAGCCCTTACAGTC+TGG | - | chr5_4:4448790-4448809 | Msa0831470:CDS | 45.0% | |
| TCATTGGCACCAGACTGTAA+GGG | + | chr5_4:4448802-4448821 | None:intergenic | 45.0% | |
| GAGGCTATGACAGACAAGAT+GGG | - | chr5_4:4448855-4448874 | Msa0831470:intron | 45.0% | |
| !! | AGGGCAGACCTTGTTGTTTA+TGG | - | chr5_4:4448899-4448918 | Msa0831470:intron | 45.0% |
| TACATTTCTGATCCGGTGGT+AGG | - | chr5_4:4449004-4449023 | Msa0831470:CDS | 45.0% | |
| TGATCCGGTGGTAGGTTATA+CGG | - | chr5_4:4449012-4449031 | Msa0831470:CDS | 45.0% | |
| TAGTCCGTATAACCTACCAC+CGG | + | chr5_4:4449019-4449038 | None:intergenic | 45.0% | |
| !! | ATAAAAATAAAATTTAGATT+AGG | - | chr5_4:4447708-4447727 | Msa0831470:intron | 5.0% |
| TTGAGCAGTTTCAGAGACCC+CGG | + | chr5_4:4443628-4443647 | None:intergenic | 50.0% | |
| !! | GGGTCTCTGAAACTGCTCAA+GGG | - | chr5_4:4443628-4443647 | Msa0831470:CDS | 50.0% |
| TGTAGCGTGGAAACCTATCG+TGG | - | chr5_4:4443832-4443851 | Msa0831470:CDS | 50.0% | |
| GCATGAACAGCATCCACGAT+AGG | + | chr5_4:4443848-4443867 | None:intergenic | 50.0% | |
| GTGGATGCTGTTCATGCCAA+AGG | - | chr5_4:4443851-4443870 | Msa0831470:CDS | 50.0% | |
| AGACAACGAATTGGAGGCGA+TGG | - | chr5_4:4444157-4444176 | Msa0831470:intron | 50.0% | |
| CACAATTCACACAACCGAGG+AGG | - | chr5_4:4444191-4444210 | Msa0831470:intron | 50.0% | |
| GGCACTTTCATGGTTACAGG+AGG | - | chr5_4:4444858-4444877 | Msa0831470:intron | 50.0% | |
| AGCAGTGTTCAGTTTAGGGG+AGG | + | chr5_4:4445337-4445356 | None:intergenic | 50.0% | |
| GTCTAGGAGGATTCACGTAG+TGG | - | chr5_4:4445523-4445542 | Msa0831470:intron | 50.0% | |
| CACGTAGTGGCTATGAAGCA+CGG | - | chr5_4:4445536-4445555 | Msa0831470:CDS | 50.0% | |
| TCCTTGAATTAGGCGTGTCC+CGG | + | chr5_4:4445665-4445684 | None:intergenic | 50.0% | |
| GTCTGTGCTTCATAGCGTAG+TGG | - | chr5_4:4445687-4445706 | Msa0831470:intron | 50.0% | |
| ! | TGGTGGGCCTTTATGCTTCT+TGG | + | chr5_4:4445816-4445835 | None:intergenic | 50.0% |
| AAGAAGAGGAATGGGATCGC+CGG | + | chr5_4:4446272-4446291 | None:intergenic | 50.0% | |
| TAGACACACATGACTCTCCG+GGG | + | chr5_4:4446396-4446415 | None:intergenic | 50.0% | |
| TTCTCATAGCAGAAGCAGCC+AGG | - | chr5_4:4446537-4446556 | Msa0831470:intron | 50.0% | |
| TCTCATAGCAGAAGCAGCCA+GGG | - | chr5_4:4446538-4446557 | Msa0831470:intron | 50.0% | |
| ! | TGTTGTTGTTACCCAGACCC+TGG | + | chr5_4:4446558-4446577 | None:intergenic | 50.0% |
| CAAGGCTATCCAAACACACC+AGG | - | chr5_4:4447316-4447335 | Msa0831470:intron | 50.0% | |
| ! | CTAAAGAGCATGTTGAGGCG+TGG | - | chr5_4:4447347-4447366 | Msa0831470:intron | 50.0% |
| GATGCGGTTCATGACAAAGG+CGG | - | chr5_4:4447382-4447401 | Msa0831470:intron | 50.0% | |
| CTATCTGTGCCTACACCGAT+TGG | - | chr5_4:4447774-4447793 | Msa0831470:CDS | 50.0% | |
| TCACGAAACCGAGACGACTA+AGG | - | chr5_4:4448227-4448246 | Msa0831470:intron | 50.0% | |
| CTCATTGGCACCAGACTGTA+AGG | + | chr5_4:4448803-4448822 | None:intergenic | 50.0% | |
| ! | CAGTCTGGTGCCAATGAGAA+AGG | - | chr5_4:4448805-4448824 | Msa0831470:CDS | 50.0% |
| GGTACTTTCATGGTTGCAGG+AGG | - | chr5_4:4448836-4448855 | Msa0831470:intron | 50.0% | |
| GGAGGCTATGACAGACAAGA+TGG | - | chr5_4:4448854-4448873 | Msa0831470:intron | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | - | chr5_4:4449073-4449092 | Msa0831470:CDS | 50.0% | |
| ! | TCTCAAAGGGCCTCTGAAGG+TGG | - | chr5_4:4443582-4443601 | Msa0831470:CDS | 55.0% |
| !! | GGGGTCTCTGAAACTGCTCA+AGG | - | chr5_4:4443627-4443646 | Msa0831470:CDS | 55.0% |
| ACGGACATAGACACGGACAC+CGG | - | chr5_4:4445555-4445574 | Msa0831470:CDS | 55.0% | |
| AATTAGGCGTGTCCCGGTGT+CGG | + | chr5_4:4445659-4445678 | None:intergenic | 55.0% | |
| ACCGGGACACGCCTAATTCA+AGG | - | chr5_4:4445661-4445680 | Msa0831470:intron | 55.0% | |
| AGAAGAGGAATGGGATCGCC+GGG | + | chr5_4:4446271-4446290 | None:intergenic | 55.0% | |
| ACATGACTCTCCGGGGTTAG+TGG | + | chr5_4:4446389-4446408 | None:intergenic | 55.0% | |
| GGTGTCTCTGACACTGCTCA+AGG | - | chr5_4:4447298-4447317 | Msa0831470:intron | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | + | chr5_4:4448493-4448512 | None:intergenic | 55.0% | |
| GGAGGTTCCACTTCCAACCT+TGG | + | chr5_4:4449083-4449102 | None:intergenic | 55.0% | |
| GCAGTTTCAGAGACCCCGGT+AGG | + | chr5_4:4443624-4443643 | None:intergenic | 60.0% | |
| TAGCAGAAGCAGCCAGGGTC+TGG | - | chr5_4:4446543-4446562 | Msa0831470:intron | 60.0% | |
| AGCAGAAGCAGCCAGGGTCT+GGG | - | chr5_4:4446544-4446563 | Msa0831470:intron | 60.0% | |
| TAGGTGTTCGCAGTGCGGTG+CGG | + | chr5_4:4446901-4446920 | None:intergenic | 60.0% | |
| CACGGACACCGGACACGACA+CGG | - | chr5_4:4445566-4445585 | Msa0831470:CDS | 65.0% | |
| CACTGACGCGTGTCCGACAC+CGG | - | chr5_4:4445643-4445662 | Msa0831470:intron | 65.0% | |
| ACTGACGCGTGTCCGACACC+GGG | - | chr5_4:4445644-4445663 | Msa0831470:intron | 65.0% | |
| GTTCGCAGTGCGGTGCGGTG+CGG | + | chr5_4:4446896-4446915 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 4443275 | 4449352 | 4443275 | ID=Msa0831470;Name=Msa0831470 |
| chr5_4 | mRNA | 4443275 | 4449352 | 4443275 | ID=Msa0831470-mRNA-1;Parent=Msa0831470;Name=Msa0831470-mRNA-1;_AED=0.37;_eAED=0.37;_QI=47|0.5|0.46|1|0.58|0.46|13|298|615 |
| chr5_4 | exon | 4443275 | 4444156 | 4443275 | ID=Msa0831470-mRNA-1:exon:1836;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4444314 | 4444472 | 4444314 | ID=Msa0831470-mRNA-1:exon:1835;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4445224 | 4445447 | 4445224 | ID=Msa0831470-mRNA-1:exon:1834;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4445528 | 4445597 | 4445528 | ID=Msa0831470-mRNA-1:exon:1833;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4447580 | 4447620 | 4447580 | ID=Msa0831470-mRNA-1:exon:1832;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4447685 | 4447704 | 4447685 | ID=Msa0831470-mRNA-1:exon:1831;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4447758 | 4447978 | 4447758 | ID=Msa0831470-mRNA-1:exon:1830;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4448027 | 4448134 | 4448027 | ID=Msa0831470-mRNA-1:exon:1829;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4448449 | 4448520 | 4448449 | ID=Msa0831470-mRNA-1:exon:1828;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4448704 | 4448834 | 4448704 | ID=Msa0831470-mRNA-1:exon:1827;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4448978 | 4449118 | 4448978 | ID=Msa0831470-mRNA-1:exon:1826;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4449209 | 4449321 | 4449209 | ID=Msa0831470-mRNA-1:exon:1825;Parent=Msa0831470-mRNA-1 |
| chr5_4 | exon | 4449342 | 4449352 | 4449342 | ID=Msa0831470-mRNA-1:exon:1824;Parent=Msa0831470-mRNA-1 |
| chr5_4 | five_prime_UTR | 4449342 | 4449352 | 4449342 | ID=Msa0831470-mRNA-1:five_prime_utr;Parent=Msa0831470-mRNA-1 |
| chr5_4 | five_prime_UTR | 4449286 | 4449321 | 4449286 | ID=Msa0831470-mRNA-1:five_prime_utr;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4449209 | 4449285 | 4449209 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4448978 | 4449118 | 4448978 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4448704 | 4448834 | 4448704 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4448449 | 4448520 | 4448449 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4448027 | 4448134 | 4448027 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4447758 | 4447978 | 4447758 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4447685 | 4447704 | 4447685 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4447580 | 4447620 | 4447580 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4445528 | 4445597 | 4445528 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4445224 | 4445447 | 4445224 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4444314 | 4444472 | 4444314 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | CDS | 4443573 | 4444156 | 4443573 | ID=Msa0831470-mRNA-1:cds;Parent=Msa0831470-mRNA-1 |
| chr5_4 | three_prime_UTR | 4443275 | 4443572 | 4443275 | ID=Msa0831470-mRNA-1:three_prime_utr;Parent=Msa0831470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
