AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1314770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314770 MtrunA17_Chr8g0344131 95.907 733 12 6 1 722 1 726 0.0 1436
Msa1314770 MtrunA17_Chr7g0269591 35.680 412 218 10 227 593 146 555 1.59e-62 224
Msa1314770 MtrunA17_Chr5g0395711 43.541 209 106 3 221 417 121 329 1.23e-37 150
Msa1314770 MtrunA17_Chr5g0395711 50.394 127 54 2 443 560 446 572 1.83e-28 122
Msa1314770 MtrunA17_Chr4g0069291 29.846 325 197 6 252 552 116 433 1.70e-33 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1314770 AT3G14050.1 66.030 733 196 10 1 711 2 703 0.0 881
Msa1314770 AT1G54130.1 63.564 752 201 15 1 720 2 712 0.0 868
Msa1314770 AT4G02260.3 39.316 351 188 7 227 552 148 498 2.53e-60 218
Msa1314770 AT4G02260.4 39.316 351 188 7 227 552 148 498 3.81e-60 218
Msa1314770 AT4G02260.2 39.316 351 188 7 227 552 148 498 4.47e-60 218
Msa1314770 AT4G02260.1 39.205 352 188 8 227 552 148 499 1.47e-58 214
Msa1314770 AT3G17470.3 31.212 330 198 7 246 552 107 430 4.19e-37 145
Msa1314770 AT3G17470.2 31.212 330 198 7 246 552 122 445 3.71e-36 144
Msa1314770 AT3G17470.1 31.212 330 198 7 246 552 107 430 4.39e-36 144

Find 187 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCTTCAACTTGCAATT+TGG 0.118666 8_4:-13872078 None:intergenic
TTGTAAATTCATCTCTTCTT+AGG 0.139163 8_4:+13868499 Msa1314770:five_prime_UTR
ATTAACTATGATTTCGAATT+AGG 0.147309 8_4:+13868810 Msa1314770:CDS
GATGATATCCATGACATTTA+TGG 0.178626 8_4:+13871037 Msa1314770:CDS
CTTACTTATGATTATATATA+CGG 0.188737 8_4:+13869690 Msa1314770:CDS
GATGGTGTTGGTGGTGATTC+TGG 0.210059 8_4:+13869272 Msa1314770:CDS
ATGCATTTGCAAGCAGAATT+TGG 0.213922 8_4:+13871335 Msa1314770:CDS
TGCTTTGGGTTCTTCTTGTT+TGG 0.222221 8_4:+13869196 Msa1314770:CDS
TTGTGAAGAGTTTGTTATTA+AGG 0.223595 8_4:+13869415 Msa1314770:CDS
ATTTCTTATCATGTCATTTC+TGG 0.239861 8_4:+13870747 Msa1314770:CDS
TCGAGTTTGCACAAAATTCT+TGG 0.262479 8_4:-13871942 None:intergenic
TTGCAATTTGGATCACTTAC+AGG 0.265645 8_4:-13872066 None:intergenic
CTGAATTTCTTCCCTATATT+CGG 0.288112 8_4:-13872145 None:intergenic
GCGACGGCGGCGTCTACGTC+TGG 0.303823 8_4:+13868861 Msa1314770:CDS
CTCGACAGTACTAGATTTGT+TGG 0.308633 8_4:+13871960 Msa1314770:CDS
TAGAAGTTGTTCACCGGTTA+TGG 0.315278 8_4:+13871104 Msa1314770:CDS
CAATCAGGCTTGTAAGAATA+TGG 0.320693 8_4:-13871545 None:intergenic
TCCGTATTTGCAGCATTGTT+TGG 0.330409 8_4:+13869581 Msa1314770:CDS
GATTATATATACGGGATGTT+TGG 0.331195 8_4:+13869699 Msa1314770:CDS
ACCGATTAGGAATAGCTAAT+TGG 0.332077 8_4:+13870580 Msa1314770:CDS
AAGAGCTGTCCTCATTAAAT+TGG 0.336185 8_4:+13870458 Msa1314770:CDS
CGACGAAGTTTGGTGGATCT+TGG 0.336434 8_4:+13869033 Msa1314770:CDS
TCCAATTAGCTATTCCTAAT+CGG 0.340721 8_4:-13870581 None:intergenic
GCACCTTTGGCCAACCGATT+AGG 0.347291 8_4:+13870567 Msa1314770:CDS
ACAAGTATCTGACCGAATAT+AGG 0.349388 8_4:+13872133 Msa1314770:CDS
TGTAAATTCATCTCTTCTTA+GGG 0.349575 8_4:+13868500 Msa1314770:five_prime_UTR
TTTGGAAACTGCTGTGTTGT+TGG 0.368793 8_4:+13869599 Msa1314770:CDS
GGTGGTGGTGGTGAATTTGA+TGG 0.370524 8_4:+13869254 Msa1314770:CDS
CAAAATATAACTTAAATAAC+TGG 0.370941 8_4:-13872395 None:intergenic
ATGATATCCATGACATTTAT+GGG 0.372392 8_4:+13871038 Msa1314770:CDS
TGGGTTTGTGAGAAGTGCTT+TGG 0.378293 8_4:+13869181 Msa1314770:CDS
ATCAACAACTTCTTAGCATA+AGG 0.384347 8_4:-13869365 None:intergenic
GAGAGATCATAGTCCAGTTT+CGG 0.385330 8_4:+13869058 Msa1314770:CDS
GAAAGCTCTTTGTGCTGTAC+AGG 0.386440 8_4:-13870642 None:intergenic
ATTCTTACAAGCCTGATTGC+GGG 0.405333 8_4:+13871549 Msa1314770:CDS
TAACCGGTGAACAACTTCTA+AGG 0.405585 8_4:-13871101 None:intergenic
CTTTGCAAACCTCTGCTGCT+TGG 0.408434 8_4:-13870526 None:intergenic
TTGTTCGAATTTGTACTTCA+AGG 0.408493 8_4:-13871307 None:intergenic
CCTCCCTGATCGAATTGTTC+CGG 0.409534 8_4:-13869132 None:intergenic
GATGACACTAGATGCATTAC+CGG 0.413123 8_4:+13870500 Msa1314770:CDS
GGCGTCTACGTCTGGGAAAT+CGG 0.414943 8_4:+13868869 Msa1314770:CDS
GGTGGTGAATTTGATGGTGT+TGG 0.416217 8_4:+13869260 Msa1314770:CDS
GGGTTTGTGAGAAGTGCTTT+GGG 0.417938 8_4:+13869182 Msa1314770:CDS
GGAGTTGCTGATTTAGTTGA+AGG 0.421830 8_4:+13869726 Msa1314770:CDS
TCCAAACAATGCTGCAAATA+CGG 0.422488 8_4:-13869582 None:intergenic
CAAGTATCTGACCGAATATA+GGG 0.424375 8_4:+13872134 Msa1314770:CDS
GAGGTTTGCAAAGGAAACTT+TGG 0.428632 8_4:+13870536 Msa1314770:CDS
AACCTCTGCTGCTTGGCAAC+CGG 0.433003 8_4:-13870519 None:intergenic
AATGATTGATTTATGTAGTT+GGG 0.435766 8_4:+13872372 Msa1314770:three_prime_UTR
ATGGGTGCCGGTGCGGGTAC+CGG 0.442415 8_4:+13869113 Msa1314770:CDS
ATCTCTGCACACTGTGGTGA+TGG 0.443111 8_4:+13871268 Msa1314770:CDS
AGTAAAGATTCCACTTCTGT+TGG 0.443308 8_4:+13871467 Msa1314770:CDS
TGTTTGGATTATGATTCTAC+TGG 0.445310 8_4:+13869212 Msa1314770:CDS
AATTTGGATTCGCTGCTCAT+TGG 0.445751 8_4:+13871351 Msa1314770:CDS
TCCAAATTGCAAGTTGAAGA+TGG 0.447857 8_4:+13872077 Msa1314770:CDS
CATGCACCTCAGACCATAAC+CGG 0.449375 8_4:-13871117 None:intergenic
ACAGGCTTGTGATTCAGTCT+TGG 0.449925 8_4:-13872048 None:intergenic
TACAACATACCCATTGAACT+TGG 0.450219 8_4:-13871167 None:intergenic
ATGCTACTACTACACGAAAC+AGG 0.451567 8_4:-13869092 None:intergenic
AATTCAACAGTAGTTGCTGC+TGG 0.454268 8_4:+13869636 Msa1314770:CDS
ATACATTGCCCCAAGTTCAA+TGG 0.454579 8_4:+13871157 Msa1314770:CDS
TAGATTTGTTGGAGAGGGTC+GGG 0.457657 8_4:+13871971 Msa1314770:CDS
TGGTGGTGATTCTGGAATTG+TGG 0.457934 8_4:+13869280 Msa1314770:CDS
ATCTTCGTCACCGGCGTCTA+CGG 0.466938 8_4:+13868839 Msa1314770:CDS
TTGGATTCGCTGCTCATTGG+AGG 0.470246 8_4:+13871354 Msa1314770:CDS
AGTAGCATGGGTGCCGGTGC+GGG 0.474221 8_4:+13869107 Msa1314770:CDS
TACGTCTGGGAAATCGGTGA+TGG 0.474358 8_4:+13868875 Msa1314770:CDS
TACATTGCCCCAAGTTCAAT+GGG 0.477235 8_4:+13871158 Msa1314770:CDS
GCTGTGTTGTTGGCTTTGAT+CGG 0.482957 8_4:+13869609 Msa1314770:CDS
GCCTCAATTCTTCCTTCAGA+GGG 0.483136 8_4:-13872026 None:intergenic
CGATCAGGGAGGGGAAGTAC+TGG 0.484040 8_4:+13869143 Msa1314770:CDS
GAATGATTGATTTATGTAGT+TGG 0.484156 8_4:+13872371 Msa1314770:three_prime_UTR
GGTACCGGAACAATTCGATC+AGG 0.485761 8_4:+13869128 Msa1314770:CDS
TGTTCGAATTTGTACTTCAA+GGG 0.486391 8_4:-13871306 None:intergenic
GCTGCGCTTGATTGTTGATA+AGG 0.487554 8_4:+13871060 Msa1314770:CDS
AGCTTTCTCAGCTTCACAAA+AGG 0.487843 8_4:-13869438 None:intergenic
GAATGAATAAGGAACAAGAA+GGG 0.488008 8_4:-13868346 None:intergenic
AGGGGAGGAGTATGAAAAGA+CGG 0.491616 8_4:-13868327 None:intergenic
AGATTACGCGGTGGTGGTGG+TGG 0.491666 8_4:+13869239 Msa1314770:CDS
GGGAGGGGAAGTACTGGTGG+TGG 0.494745 8_4:+13869149 Msa1314770:CDS
GGGCTCGATGGGTTGTCACC+TGG 0.495606 8_4:+13871429 Msa1314770:CDS
TGAAAAGACGGGTTTAACCT+TGG 0.495675 8_4:-13868315 None:intergenic
GGGGAGGAGTATGAAAAGAC+GGG 0.499636 8_4:-13868326 None:intergenic
AGAGAGAAGCACGCAAGAGA+TGG 0.503862 8_4:-13868426 None:intergenic
GTTAGATTACGCGGTGGTGG+TGG 0.504725 8_4:+13869236 Msa1314770:CDS
AGATACTTGTCAGGTATGGC+TGG 0.505901 8_4:-13872120 None:intergenic
AGAGCTTTCGTCAAAGCTTG+TGG 0.510991 8_4:+13870656 Msa1314770:CDS
TTACTTATGATTATATATAC+GGG 0.511289 8_4:+13869691 Msa1314770:CDS
TTACGCGGTGGTGGTGGTGG+TGG 0.511301 8_4:+13869242 Msa1314770:CDS
TATTCGGTCAGATACTTGTC+AGG 0.512446 8_4:-13872129 None:intergenic
ATCTTCATCACCACCACCAC+CGG 0.515186 8_4:-13868967 None:intergenic
CGCTGCTCATTGGAGGTACA+AGG 0.516170 8_4:+13871361 Msa1314770:CDS
TTCTTCATATGTGCTTCAGA+TGG 0.516537 8_4:+13871400 Msa1314770:CDS
GGTGAATTTGATGGTGTTGG+TGG 0.516562 8_4:+13869263 Msa1314770:CDS
CGGTTATGGTCTGAGGTGCA+TGG 0.519568 8_4:+13871118 Msa1314770:CDS
CTAGATTTGTTGGAGAGGGT+CGG 0.525008 8_4:+13871970 Msa1314770:CDS
TTACAAGCCTGATTGCGGGC+AGG 0.526518 8_4:+13871553 Msa1314770:CDS
GGAGGGGAAGTACTGGTGGT+GGG 0.527525 8_4:+13869150 Msa1314770:CDS
GGCCTCAATTCTTCCTTCAG+AGG 0.533475 8_4:-13872027 None:intergenic
TGAGAAAGCTCATAGAGGAC+AGG 0.534366 8_4:+13869451 Msa1314770:CDS
TGGTGATGAAGATGAATTGA+AGG 0.535373 8_4:+13868977 Msa1314770:CDS
ACAACATACCCATTGAACTT+GGG 0.535483 8_4:-13871166 None:intergenic
GTCACCGGCGTCTACGGCGA+CGG 0.537490 8_4:+13868845 Msa1314770:CDS
AGATGGTTGAGTGGGCTCGA+TGG 0.537950 8_4:+13871417 Msa1314770:CDS
GCTGTGACTAAATCAAATGT+TGG 0.538779 8_4:-13872273 None:intergenic
GATGGTTGAGTGGGCTCGAT+GGG 0.540134 8_4:+13871418 Msa1314770:CDS
CGGGCTAACTGTATCAAGCA+TGG 0.545579 8_4:+13872182 Msa1314770:CDS
AACATATAGGTTCCCTCTGA+AGG 0.546405 8_4:+13872014 Msa1314770:CDS
GACAGTTATCAGCATGAGAA+GGG 0.546477 8_4:-13871523 None:intergenic
TGTTTCGTGTAGTAGTAGCA+TGG 0.546500 8_4:+13869094 Msa1314770:CDS
ATCGACAAATCCAACAGAAG+TGG 0.547140 8_4:-13871477 None:intergenic
ATATACGGGATGTTTGGAGC+TGG 0.549390 8_4:+13869705 Msa1314770:CDS
CCAAATTGCAAGTTGAAGAT+GGG 0.550752 8_4:+13872078 Msa1314770:CDS
AATTGTTCCGGTACCCGCAC+CGG 0.551906 8_4:-13869120 None:intergenic
ATTAGCTATTCCTAATCGGT+TGG 0.552553 8_4:-13870577 None:intergenic
CTCTTGCATCTGCCATTGCA+AGG 0.553256 8_4:-13870440 None:intergenic
TTGCAAGGAACATTGTATGC+AGG 0.553528 8_4:-13870425 None:intergenic
GAGCAAGCACTCAAAGATGA+AGG 0.553848 8_4:+13870723 Msa1314770:CDS
GCATACAATGTTCCTTGCAA+TGG 0.556040 8_4:+13870428 Msa1314770:CDS
ACGTCTGGGAAATCGGTGAT+GGG 0.557642 8_4:+13868876 Msa1314770:CDS
ATTCAACAGTAGTTGCTGCT+GGG 0.558656 8_4:+13869637 Msa1314770:CDS
TAGTAGCATGGGTGCCGGTG+CGG 0.559495 8_4:+13869106 Msa1314770:CDS
TATTCTTACAAGCCTGATTG+CGG 0.560842 8_4:+13871548 Msa1314770:CDS
GCTACTGCAAGCAGCATGGT+TGG 0.562551 8_4:+13872213 Msa1314770:CDS
GGTCAGATACTTGTCAGGTA+TGG 0.563602 8_4:-13872124 None:intergenic
AGCGCAGCCCATAAATGTCA+TGG 0.564123 8_4:-13871045 None:intergenic
TACCGGTTGCCAAGCAGCAG+AGG 0.564469 8_4:+13870517 Msa1314770:CDS
GGAACAATTCGATCAGGGAG+GGG 0.565296 8_4:+13869134 Msa1314770:CDS
CGACGGCGGCGTCTACGTCT+GGG 0.569402 8_4:+13868862 Msa1314770:CDS
GGAATGAATAAGGAACAAGA+AGG 0.570177 8_4:-13868347 None:intergenic
CTTATCATGTCATTTCTGGA+CGG 0.571086 8_4:+13870751 Msa1314770:CDS
CAACATACCCATTGAACTTG+GGG 0.571860 8_4:-13871165 None:intergenic
GGACAGTTATCAGCATGAGA+AGG 0.573734 8_4:-13871524 None:intergenic
GCTGTAGGTTGACAACATAT+AGG 0.573805 8_4:+13872001 Msa1314770:CDS
TGTTCACCGGTTATGGTCTG+AGG 0.575398 8_4:+13871111 Msa1314770:CDS
AATGAATAAGGAACAAGAAG+GGG 0.578319 8_4:-13868345 None:intergenic
GAGTTGCTGATTTAGTTGAA+GGG 0.580287 8_4:+13869727 Msa1314770:CDS
TCTCTGCACACTGTGGTGAT+GGG 0.580339 8_4:+13871269 Msa1314770:CDS
ATCGATCAGCCAATTTAATG+AGG 0.581475 8_4:-13870467 None:intergenic
GAATAAGGAACAAGAAGGGG+AGG 0.582290 8_4:-13868342 None:intergenic
GTTTCGTGTAGTAGTAGCAT+GGG 0.582976 8_4:+13869095 Msa1314770:CDS
AAGCCTTAGAAGTTGTTCAC+CGG 0.583932 8_4:+13871098 Msa1314770:CDS
GGGTCGGGCGAGCAAGCTGT+AGG 0.584040 8_4:+13871986 Msa1314770:CDS
ACTGAGTCACTTAAGCAAGC+TGG 0.586111 8_4:+13870359 Msa1314770:CDS
AGTACTAGATTTGTTGGAGA+GGG 0.591903 8_4:+13871966 Msa1314770:CDS
CGGAACAATTCGATCAGGGA+GGG 0.592758 8_4:+13869133 Msa1314770:CDS
GGTTATGGTCTGAGGTGCAT+GGG 0.593196 8_4:+13871119 Msa1314770:CDS
CACACTGTGGTGATGGGTGA+AGG 0.596315 8_4:+13871275 Msa1314770:CDS
AAAGCTCTTTGTGCTGTACA+GGG 0.599815 8_4:-13870641 None:intergenic
GGTGTAGAACACACACTACT+CGG 0.601489 8_4:-13868780 None:intergenic
ATTAGGAATAGCTAATTGGA+AGG 0.601826 8_4:+13870584 Msa1314770:CDS
TTCAGCGAATGTATGATCGC+GGG 0.602849 8_4:+13872163 Msa1314770:CDS
GCGCTTGATTGTTGATAAGG+AGG 0.603331 8_4:+13871063 Msa1314770:CDS
TGTAGTAGTAGCATGGGTGC+CGG 0.604049 8_4:+13869101 Msa1314770:CDS
GTTCGAATTTGTACTTCAAG+GGG 0.605083 8_4:-13871305 None:intergenic
ATTCCTAATCGGTTGGCCAA+AGG 0.606063 8_4:-13870570 None:intergenic
CAAGCAGCAGAGGTTTGCAA+AGG 0.607809 8_4:+13870527 Msa1314770:CDS
GCATGAGAAGGGAACTTGCA+AGG 0.608349 8_4:-13871512 None:intergenic
TCAGGGAGGGGAAGTACTGG+TGG 0.609082 8_4:+13869146 Msa1314770:CDS
TGTGCTTCAGATGGTTGAGT+GGG 0.610056 8_4:+13871409 Msa1314770:CDS
ATGTGCTTCAGATGGTTGAG+TGG 0.615998 8_4:+13871408 Msa1314770:CDS
AGGATCTAGATCTTCGTCAC+CGG 0.616184 8_4:+13868830 Msa1314770:CDS
GGGCTAACTGTATCAAGCAT+GGG 0.621683 8_4:+13872183 Msa1314770:CDS
TGTGGTGATGGGTGAAGGCA+AGG 0.624487 8_4:+13871280 Msa1314770:CDS
TACTGCTACTGCAAGCAGCA+TGG 0.624524 8_4:+13872209 Msa1314770:CDS
GGTGTTAGATTACGCGGTGG+TGG 0.624885 8_4:+13869233 Msa1314770:CDS
GCCGCCGTCGCCGTAGACGC+CGG 0.625619 8_4:-13868849 None:intergenic
AAATCATAGTTAATCTGATG+CGG 0.628203 8_4:-13868801 None:intergenic
TCCCTCTGAAGGAAGAATTG+AGG 0.628438 8_4:+13872025 Msa1314770:CDS
CAAGATCCACCAAACTTCGT+CGG 0.628498 8_4:-13869032 None:intergenic
TCTGGGAAATCGGTGATGGG+TGG 0.638476 8_4:+13868879 Msa1314770:CDS
CAGTACTAGATTTGTTGGAG+AGG 0.642485 8_4:+13871965 Msa1314770:CDS
TGTTTGTAGATGCGAGCTAG+TGG 0.645770 8_4:+13869555 Msa1314770:intron
GAAGCTGAGAAAGCTCATAG+AGG 0.646306 8_4:+13869446 Msa1314770:CDS
TCTACTGGTGTTAGATTACG+CGG 0.646568 8_4:+13869227 Msa1314770:CDS
AGTTGCTGATTTAGTTGAAG+GGG 0.648111 8_4:+13869728 Msa1314770:CDS
ACCGGCGTCTACGGCGACGG+CGG 0.651192 8_4:+13868848 Msa1314770:CDS
ACATGCTGCTTCACCACCGT+CGG 0.651198 8_4:-13868924 None:intergenic
CAAGGAACATTGTATGCAGG+CGG 0.659437 8_4:-13870422 None:intergenic
GTACCGGAACAATTCGATCA+GGG 0.659700 8_4:+13869129 Msa1314770:CDS
ATTCAGCGAATGTATGATCG+CGG 0.666404 8_4:+13872162 Msa1314770:CDS
ATATACAAATGAATGTGCCG+AGG 0.677700 8_4:-13868535 None:intergenic
CCGGAACAATTCGATCAGGG+AGG 0.701868 8_4:+13869132 Msa1314770:CDS
GTAGAACACACACTACTCGG+TGG 0.713186 8_4:-13868777 None:intergenic
ACTGGTGTTAGATTACGCGG+TGG 0.729692 8_4:+13869230 Msa1314770:CDS
TGAGAAGGGAACTTGCAAGG+TGG 0.737719 8_4:-13871509 None:intergenic
TTATCAATCTCTGCACACTG+TGG 0.751179 8_4:+13871262 Msa1314770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTACTTATGATTATATATA+CGG + chr8_4:13869690-13869709 Msa1314770:CDS 15.0%
!! TTACTTATGATTATATATAC+GGG + chr8_4:13869691-13869710 Msa1314770:CDS 15.0%
!!! TAGAATTATGTTCAATATTT+TGG + chr8_4:13871622-13871641 Msa1314770:intron 15.0%
!!! AGAATTATGTTCAATATTTT+GGG + chr8_4:13871623-13871642 Msa1314770:intron 15.0%
!! CAAAATATAACTTAAATAAC+TGG - chr8_4:13872398-13872417 None:intergenic 15.0%
!!! TTGTTTGTGTTTATGTTTTA+TGG - chr8_4:13868374-13868393 None:intergenic 20.0%
!! AGAGATGAATTTACAAAAAA+GGG - chr8_4:13868495-13868514 None:intergenic 20.0%
!! AAGAGATGAATTTACAAAAA+AGG - chr8_4:13868496-13868515 None:intergenic 20.0%
!!! TGTTTTTTAATTTTGTACAG+AGG - chr8_4:13868622-13868641 None:intergenic 20.0%
!!! TTCTTCTTCTTTTTCAATTT+GGG - chr8_4:13868695-13868714 None:intergenic 20.0%
!! ATTAACTATGATTTCGAATT+AGG + chr8_4:13868810-13868829 Msa1314770:CDS 20.0%
!!! TTTAAGATTAAGATGATTGA+TGG + chr8_4:13869791-13869810 Msa1314770:intron 20.0%
!! ATAAATAATGAAATGAAAGC+AGG - chr8_4:13871674-13871693 None:intergenic 20.0%
!!! AATGATTGATTTATGTAGTT+GGG + chr8_4:13872372-13872391 Msa1314770:three_prime_UTR 20.0%
!!! GTTTAACCTTGGATTTTTTT+TGG - chr8_4:13868307-13868326 None:intergenic 25.0%
!! TTTGTGTTTATGTTTTATGG+AGG - chr8_4:13868371-13868390 None:intergenic 25.0%
! AATTTACAAAAAAGGGATTC+TGG - chr8_4:13868488-13868507 None:intergenic 25.0%
! TTGTAAATTCATCTCTTCTT+AGG + chr8_4:13868499-13868518 Msa1314770:five_prime_UTR 25.0%
! TGTAAATTCATCTCTTCTTA+GGG + chr8_4:13868500-13868519 Msa1314770:five_prime_UTR 25.0%
!!! CTTTTTCAATTTGGGAATTA+GGG - chr8_4:13868687-13868706 None:intergenic 25.0%
!!! TCTTTTTCAATTTGGGAATT+AGG - chr8_4:13868688-13868707 None:intergenic 25.0%
!!! CTTCTTCTTCTTTTTCAATT+TGG - chr8_4:13868696-13868715 None:intergenic 25.0%
! AAATCATAGTTAATCTGATG+CGG - chr8_4:13868804-13868823 None:intergenic 25.0%
!! TAATTTGGATGATACTTTTG+TGG + chr8_4:13869316-13869335 Msa1314770:CDS 25.0%
!!! TTGTGAAGAGTTTGTTATTA+AGG + chr8_4:13869415-13869434 Msa1314770:CDS 25.0%
!! TTATGTGTGTTTGTGATTTT+TGG + chr8_4:13869491-13869510 Msa1314770:intron 25.0%
!!! TTTCGGTGTTAATCAATAAT+TGG + chr8_4:13869762-13869781 Msa1314770:intron 25.0%
!!! TTCGGTGTTAATCAATAATT+GGG + chr8_4:13869763-13869782 Msa1314770:intron 25.0%
! TAATAACTACAAACATCAAG+AGG - chr8_4:13870010-13870029 None:intergenic 25.0%
! AATGACAATTCAAATCCATT+AGG + chr8_4:13870042-13870061 Msa1314770:intron 25.0%
! CAAATCTATCATAAAAAGCT+AGG - chr8_4:13870090-13870109 None:intergenic 25.0%
!! TTTTTGTATTGCTAGTGATT+TGG + chr8_4:13870163-13870182 Msa1314770:intron 25.0%
!!! AAACCGATTAATTTGTATTG+TGG + chr8_4:13870212-13870231 Msa1314770:intron 25.0%
! CAACCACAATACAAATTAAT+CGG - chr8_4:13870218-13870237 None:intergenic 25.0%
!! ATTTCTTATCATGTCATTTC+TGG + chr8_4:13870747-13870766 Msa1314770:CDS 25.0%
!! TTTGAAGTGTGCAAATAATA+TGG - chr8_4:13870968-13870987 None:intergenic 25.0%
! ATGATATCCATGACATTTAT+GGG + chr8_4:13871038-13871057 Msa1314770:CDS 25.0%
! TAAATCAGATGATATAGAGA+CGG - chr8_4:13871225-13871244 None:intergenic 25.0%
!!! TTCAATATTTTGGGTTTAGT+TGG + chr8_4:13871632-13871651 Msa1314770:intron 25.0%
! GAAAACAAGTGTTAAAACAA+AGG - chr8_4:13871715-13871734 None:intergenic 25.0%
! TTGTACAGATATTTGAAAAC+AGG + chr8_4:13871756-13871775 Msa1314770:intron 25.0%
! AAACAGGAAACTGTTAAATT+AGG + chr8_4:13871772-13871791 Msa1314770:intron 25.0%
! AACAGGAAACTGTTAAATTA+GGG + chr8_4:13871773-13871792 Msa1314770:intron 25.0%
!!! TTTTTTATCTCAAACCAAAC+AGG + chr8_4:13871828-13871847 Msa1314770:intron 25.0%
!!! TTTTTGAAGAACAAGCAAAA+GGG - chr8_4:13872249-13872268 None:intergenic 25.0%
!!! ATTTTTGAAGAACAAGCAAA+AGG - chr8_4:13872250-13872269 None:intergenic 25.0%
!! GAATGATTGATTTATGTAGT+TGG + chr8_4:13872371-13872390 Msa1314770:three_prime_UTR 25.0%
ATTCCACCAAAAAAAATCCA+AGG + chr8_4:13868298-13868317 Msa1314770:five_prime_UTR 30.0%
!!! TAACCTTGGATTTTTTTTGG+TGG - chr8_4:13868304-13868323 None:intergenic 30.0%
AATGAATAAGGAACAAGAAG+GGG - chr8_4:13868348-13868367 None:intergenic 30.0%
GAATGAATAAGGAACAAGAA+GGG - chr8_4:13868349-13868368 None:intergenic 30.0%
! GTTTTATGGAGGAATGAATA+AGG - chr8_4:13868360-13868379 None:intergenic 30.0%
!!! AAGAAGAAGGTTTTGGTTTA+TGG + chr8_4:13868725-13868744 Msa1314770:exon 30.0%
TGTTTGGATTATGATTCTAC+TGG + chr8_4:13869212-13869231 Msa1314770:CDS 30.0%
!! GGATGAGTTGACTTTTAATT+TGG + chr8_4:13869301-13869320 Msa1314770:CDS 30.0%
ATCAACAACTTCTTAGCATA+AGG - chr8_4:13869368-13869387 None:intergenic 30.0%
GATTATATATACGGGATGTT+TGG + chr8_4:13869699-13869718 Msa1314770:CDS 30.0%
AACATGCAATGCAAATCAAA+AGG - chr8_4:13869825-13869844 None:intergenic 30.0%
AGCTTATTGCATAAACCTAA+TGG - chr8_4:13870060-13870079 None:intergenic 30.0%
TATGTTATGTGTTTGTCAAG+TGG + chr8_4:13870119-13870138 Msa1314770:intron 30.0%
!!! AGTGATTTGGCTTTTTTGTA+TGG + chr8_4:13870176-13870195 Msa1314770:intron 30.0%
!! CGATTAATTTGTATTGTGGT+TGG + chr8_4:13870216-13870235 Msa1314770:intron 30.0%
TCCAATTAGCTATTCCTAAT+CGG - chr8_4:13870584-13870603 None:intergenic 30.0%
ATTAGGAATAGCTAATTGGA+AGG + chr8_4:13870584-13870603 Msa1314770:CDS 30.0%
ATAATATGGTGCATAATGTC+AGG - chr8_4:13870954-13870973 None:intergenic 30.0%
TCATTTGTCTACATATTTGC+AGG + chr8_4:13870999-13871018 Msa1314770:intron 30.0%
GATGATATCCATGACATTTA+TGG + chr8_4:13871037-13871056 Msa1314770:CDS 30.0%
TGTTCGAATTTGTACTTCAA+GGG - chr8_4:13871309-13871328 None:intergenic 30.0%
TTGTTCGAATTTGTACTTCA+AGG - chr8_4:13871310-13871329 None:intergenic 30.0%
TCAATCATGATAACAAACAC+AGG - chr8_4:13871584-13871603 None:intergenic 30.0%
TATCATGATTGAGAATGACA+AGG + chr8_4:13871592-13871611 Msa1314770:intron 30.0%
ACAGGAAACTGTTAAATTAG+GGG + chr8_4:13871774-13871793 Msa1314770:intron 30.0%
TTATACACTTCATGAAACCA+AGG - chr8_4:13871854-13871873 None:intergenic 30.0%
CTGAATTTCTTCCCTATATT+CGG - chr8_4:13872148-13872167 None:intergenic 30.0%
GGAATGAATAAGGAACAAGA+AGG - chr8_4:13868350-13868369 None:intergenic 35.0%
! GGGATTCTGGAAAAATATGA+AGG - chr8_4:13868475-13868494 None:intergenic 35.0%
! TAGGGTTCTTTTCTTATCCT+CGG + chr8_4:13868518-13868537 Msa1314770:five_prime_UTR 35.0%
ATATACAAATGAATGTGCCG+AGG - chr8_4:13868538-13868557 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr8_4:13868706-13868725 Msa1314770:five_prime_UTR 35.0%
! GAAGAAGAAGAAGAAGGTTT+TGG + chr8_4:13868718-13868737 Msa1314770:five_prime_UTR 35.0%
!!! AAGAAGGTTTTGGTTTATGG+CGG + chr8_4:13868728-13868747 Msa1314770:exon 35.0%
!! CCTTTTACTTCGAGTTTTTC+CGG + chr8_4:13868948-13868967 Msa1314770:CDS 35.0%
! TGGTGATGAAGATGAATTGA+AGG + chr8_4:13868977-13868996 Msa1314770:CDS 35.0%
! TTTGGATGATACTTTTGTGG+AGG + chr8_4:13869319-13869338 Msa1314770:CDS 35.0%
! TTGGATGATACTTTTGTGGA+GGG + chr8_4:13869320-13869339 Msa1314770:CDS 35.0%
TCCAAACAATGCTGCAAATA+CGG - chr8_4:13869585-13869604 None:intergenic 35.0%
!! GAGTTGCTGATTTAGTTGAA+GGG + chr8_4:13869727-13869746 Msa1314770:CDS 35.0%
!! AGTTGCTGATTTAGTTGAAG+GGG + chr8_4:13869728-13869747 Msa1314770:CDS 35.0%
!!! AAGGGGTGAGGAATTTTTTT+CGG + chr8_4:13869745-13869764 Msa1314770:intron 35.0%
! ATTGTGGTTGGCATTTTTGT+AGG + chr8_4:13870228-13870247 Msa1314770:intron 35.0%
GCTTCAAGAATCTAACTGAT+TGG + chr8_4:13870315-13870334 Msa1314770:intron 35.0%
!! ACTGATTGGTATGCTATTTC+AGG + chr8_4:13870329-13870348 Msa1314770:intron 35.0%
AAGAGCTGTCCTCATTAAAT+TGG + chr8_4:13870458-13870477 Msa1314770:CDS 35.0%
ATCGATCAGCCAATTTAATG+AGG - chr8_4:13870470-13870489 None:intergenic 35.0%
! TTTGGAGATTTTTGCACCTT+TGG + chr8_4:13870554-13870573 Msa1314770:CDS 35.0%
ATTAGCTATTCCTAATCGGT+TGG - chr8_4:13870580-13870599 None:intergenic 35.0%
ACCGATTAGGAATAGCTAAT+TGG + chr8_4:13870580-13870599 Msa1314770:CDS 35.0%
! CTTATCATGTCATTTCTGGA+CGG + chr8_4:13870751-13870770 Msa1314770:CDS 35.0%
TTACCTTTCCCTCTTTCATT+TGG + chr8_4:13870819-13870838 Msa1314770:intron 35.0%
ACAACATACCCATTGAACTT+GGG - chr8_4:13871169-13871188 None:intergenic 35.0%
TACAACATACCCATTGAACT+TGG - chr8_4:13871170-13871189 None:intergenic 35.0%
GGTATGTTGTAGCTCAATAA+TGG + chr8_4:13871179-13871198 Msa1314770:intron 35.0%
GTTCGAATTTGTACTTCAAG+GGG - chr8_4:13871308-13871327 None:intergenic 35.0%
ATGCATTTGCAAGCAGAATT+TGG + chr8_4:13871335-13871354 Msa1314770:CDS 35.0%
TTCTTCATATGTGCTTCAGA+TGG + chr8_4:13871400-13871419 Msa1314770:CDS 35.0%
AGTAAAGATTCCACTTCTGT+TGG + chr8_4:13871467-13871486 Msa1314770:CDS 35.0%
CAATCAGGCTTGTAAGAATA+TGG - chr8_4:13871548-13871567 None:intergenic 35.0%
TATTCTTACAAGCCTGATTG+CGG + chr8_4:13871548-13871567 Msa1314770:CDS 35.0%
ACTATCATTCTGTCTGATTC+TGG + chr8_4:13871903-13871922 Msa1314770:intron 35.0%
TCGAGTTTGCACAAAATTCT+TGG - chr8_4:13871945-13871964 None:intergenic 35.0%
!! AGTACTAGATTTGTTGGAGA+GGG + chr8_4:13871966-13871985 Msa1314770:CDS 35.0%
TTGCAATTTGGATCACTTAC+AGG - chr8_4:13872069-13872088 None:intergenic 35.0%
! TCCAAATTGCAAGTTGAAGA+TGG + chr8_4:13872077-13872096 Msa1314770:CDS 35.0%
! CCAAATTGCAAGTTGAAGAT+GGG + chr8_4:13872078-13872097 Msa1314770:CDS 35.0%
ACAAGTATCTGACCGAATAT+AGG + chr8_4:13872133-13872152 Msa1314770:CDS 35.0%
CAAGTATCTGACCGAATATA+GGG + chr8_4:13872134-13872153 Msa1314770:CDS 35.0%
GCTGTGACTAAATCAAATGT+TGG - chr8_4:13872276-13872295 None:intergenic 35.0%
! TGAAAAGACGGGTTTAACCT+TGG - chr8_4:13868318-13868337 None:intergenic 40.0%
!! GTGTTTGTTTTCATCTCCGA+CGG + chr8_4:13868908-13868927 Msa1314770:CDS 40.0%
CCGGAAAAACTCGAAGTAAA+AGG - chr8_4:13868951-13868970 None:intergenic 40.0%
!! TTTACTTCGAGTTTTTCCGG+TGG + chr8_4:13868951-13868970 Msa1314770:CDS 40.0%
! TCATTTTCACCGACGAAGTT+TGG + chr8_4:13869023-13869042 Msa1314770:CDS 40.0%
GAGAGATCATAGTCCAGTTT+CGG + chr8_4:13869058-13869077 Msa1314770:CDS 40.0%
ATGCTACTACTACACGAAAC+AGG - chr8_4:13869095-13869114 None:intergenic 40.0%
TGTTTCGTGTAGTAGTAGCA+TGG + chr8_4:13869094-13869113 Msa1314770:CDS 40.0%
GTTTCGTGTAGTAGTAGCAT+GGG + chr8_4:13869095-13869114 Msa1314770:CDS 40.0%
! TGCTTTGGGTTCTTCTTGTT+TGG + chr8_4:13869196-13869215 Msa1314770:CDS 40.0%
! TCTACTGGTGTTAGATTACG+CGG + chr8_4:13869227-13869246 Msa1314770:CDS 40.0%
AGCTTTCTCAGCTTCACAAA+AGG - chr8_4:13869441-13869460 None:intergenic 40.0%
TCCGTATTTGCAGCATTGTT+TGG + chr8_4:13869581-13869600 Msa1314770:CDS 40.0%
TTTGGAAACTGCTGTGTTGT+TGG + chr8_4:13869599-13869618 Msa1314770:CDS 40.0%
AATTCAACAGTAGTTGCTGC+TGG + chr8_4:13869636-13869655 Msa1314770:CDS 40.0%
ATTCAACAGTAGTTGCTGCT+GGG + chr8_4:13869637-13869656 Msa1314770:CDS 40.0%
!! GGAGTTGCTGATTTAGTTGA+AGG + chr8_4:13869726-13869745 Msa1314770:CDS 40.0%
GATGTCTTCCACCAATTGTT+CGG + chr8_4:13869928-13869947 Msa1314770:intron 40.0%
ATGTCTTCCACCAATTGTTC+GGG + chr8_4:13869929-13869948 Msa1314770:intron 40.0%
TTGCAAGGAACATTGTATGC+AGG - chr8_4:13870428-13870447 None:intergenic 40.0%
GCATACAATGTTCCTTGCAA+TGG + chr8_4:13870428-13870447 Msa1314770:CDS 40.0%
GATGACACTAGATGCATTAC+CGG + chr8_4:13870500-13870519 Msa1314770:CDS 40.0%
GAGGTTTGCAAAGGAAACTT+TGG + chr8_4:13870536-13870555 Msa1314770:CDS 40.0%
AAAGCTCTTTGTGCTGTACA+GGG - chr8_4:13870644-13870663 None:intergenic 40.0%
CATCCAAATGAAAGAGGGAA+AGG - chr8_4:13870825-13870844 None:intergenic 40.0%
CTTTCCCTCTTTCATTTGGA+TGG + chr8_4:13870823-13870842 Msa1314770:intron 40.0%
GTGACCATCCAAATGAAAGA+GGG - chr8_4:13870830-13870849 None:intergenic 40.0%
AGTGACCATCCAAATGAAAG+AGG - chr8_4:13870831-13870850 None:intergenic 40.0%
AAGCCTTAGAAGTTGTTCAC+CGG + chr8_4:13871098-13871117 Msa1314770:CDS 40.0%
TAACCGGTGAACAACTTCTA+AGG - chr8_4:13871104-13871123 None:intergenic 40.0%
! TAGAAGTTGTTCACCGGTTA+TGG + chr8_4:13871104-13871123 Msa1314770:CDS 40.0%
ATACATTGCCCCAAGTTCAA+TGG + chr8_4:13871157-13871176 Msa1314770:CDS 40.0%
TACATTGCCCCAAGTTCAAT+GGG + chr8_4:13871158-13871177 Msa1314770:CDS 40.0%
CAACATACCCATTGAACTTG+GGG - chr8_4:13871168-13871187 None:intergenic 40.0%
TTATCAATCTCTGCACACTG+TGG + chr8_4:13871262-13871281 Msa1314770:CDS 40.0%
AATTTGGATTCGCTGCTCAT+TGG + chr8_4:13871351-13871370 Msa1314770:CDS 40.0%
ATCGACAAATCCAACAGAAG+TGG - chr8_4:13871480-13871499 None:intergenic 40.0%
GACAGTTATCAGCATGAGAA+GGG - chr8_4:13871526-13871545 None:intergenic 40.0%
ATTCTTACAAGCCTGATTGC+GGG + chr8_4:13871549-13871568 Msa1314770:CDS 40.0%
CTCGACAGTACTAGATTTGT+TGG + chr8_4:13871960-13871979 Msa1314770:CDS 40.0%
!! CAGTACTAGATTTGTTGGAG+AGG + chr8_4:13871965-13871984 Msa1314770:CDS 40.0%
! GCTGTAGGTTGACAACATAT+AGG + chr8_4:13872001-13872020 Msa1314770:CDS 40.0%
AACATATAGGTTCCCTCTGA+AGG + chr8_4:13872014-13872033 Msa1314770:CDS 40.0%
CCCATCTTCAACTTGCAATT+TGG - chr8_4:13872081-13872100 None:intergenic 40.0%
TATTCGGTCAGATACTTGTC+AGG - chr8_4:13872132-13872151 None:intergenic 40.0%
ATTCAGCGAATGTATGATCG+CGG + chr8_4:13872162-13872181 Msa1314770:CDS 40.0%
! AGGGGAGGAGTATGAAAAGA+CGG - chr8_4:13868330-13868349 None:intergenic 45.0%
GAATAAGGAACAAGAAGGGG+AGG - chr8_4:13868345-13868364 None:intergenic 45.0%
GGTGTAGAACACACACTACT+CGG - chr8_4:13868783-13868802 None:intergenic 45.0%
AGGATCTAGATCTTCGTCAC+CGG + chr8_4:13868830-13868849 Msa1314770:CDS 45.0%
!! TTTGTTTTCATCTCCGACGG+TGG + chr8_4:13868911-13868930 Msa1314770:CDS 45.0%
! TTTTCACCGACGAAGTTTGG+TGG + chr8_4:13869026-13869045 Msa1314770:CDS 45.0%
CAAGATCCACCAAACTTCGT+CGG - chr8_4:13869035-13869054 None:intergenic 45.0%
GGACACTGAAAAACCGAAAC+TGG - chr8_4:13869074-13869093 None:intergenic 45.0%
GTACCGGAACAATTCGATCA+GGG + chr8_4:13869129-13869148 Msa1314770:CDS 45.0%
!!! ACTGGTGGTGGGTTTTTTGA+TGG + chr8_4:13869161-13869180 Msa1314770:CDS 45.0%
!!! CTGGTGGTGGGTTTTTTGAT+GGG + chr8_4:13869162-13869181 Msa1314770:CDS 45.0%
!! TGGGTTTGTGAGAAGTGCTT+TGG + chr8_4:13869181-13869200 Msa1314770:CDS 45.0%
!! GGGTTTGTGAGAAGTGCTTT+GGG + chr8_4:13869182-13869201 Msa1314770:CDS 45.0%
!! GGTGGTGAATTTGATGGTGT+TGG + chr8_4:13869260-13869279 Msa1314770:CDS 45.0%
!! GGTGAATTTGATGGTGTTGG+TGG + chr8_4:13869263-13869282 Msa1314770:CDS 45.0%
!! TGGTGGTGATTCTGGAATTG+TGG + chr8_4:13869280-13869299 Msa1314770:CDS 45.0%
! ACTTTTGTGGAGGGTTGTGT+TGG + chr8_4:13869329-13869348 Msa1314770:CDS 45.0%
GAAGCTGAGAAAGCTCATAG+AGG + chr8_4:13869446-13869465 Msa1314770:CDS 45.0%
TGAGAAAGCTCATAGAGGAC+AGG + chr8_4:13869451-13869470 Msa1314770:CDS 45.0%
TGTTTGTAGATGCGAGCTAG+TGG + chr8_4:13869555-13869574 Msa1314770:intron 45.0%
!! GCTGTGTTGTTGGCTTTGAT+CGG + chr8_4:13869609-13869628 Msa1314770:CDS 45.0%
! ATATACGGGATGTTTGGAGC+TGG + chr8_4:13869705-13869724 Msa1314770:CDS 45.0%
CTGATTTAGTTGAAGGGGTG+AGG + chr8_4:13869733-13869752 Msa1314770:intron 45.0%
TGTCTTCCACCAATTGTTCG+GGG + chr8_4:13869930-13869949 Msa1314770:intron 45.0%
AGAGATGTACCCCGAACAAT+TGG - chr8_4:13869942-13869961 None:intergenic 45.0%
AATTGTTCGGGGTACATCTC+TGG + chr8_4:13869941-13869960 Msa1314770:intron 45.0%
ACTGAGTCACTTAAGCAAGC+TGG + chr8_4:13870359-13870378 Msa1314770:CDS 45.0%
CAAGGAACATTGTATGCAGG+CGG - chr8_4:13870425-13870444 None:intergenic 45.0%
! ATTCCTAATCGGTTGGCCAA+AGG - chr8_4:13870573-13870592 None:intergenic 45.0%
GAAAGCTCTTTGTGCTGTAC+AGG - chr8_4:13870645-13870664 None:intergenic 45.0%
AGAGCTTTCGTCAAAGCTTG+TGG + chr8_4:13870656-13870675 Msa1314770:CDS 45.0%
GAGCAAGCACTCAAAGATGA+AGG + chr8_4:13870723-13870742 Msa1314770:CDS 45.0%
GCTGCGCTTGATTGTTGATA+AGG + chr8_4:13871060-13871079 Msa1314770:CDS 45.0%
! GCGCTTGATTGTTGATAAGG+AGG + chr8_4:13871063-13871082 Msa1314770:CDS 45.0%
ATGTGCTTCAGATGGTTGAG+TGG + chr8_4:13871408-13871427 Msa1314770:CDS 45.0%
TGTGCTTCAGATGGTTGAGT+GGG + chr8_4:13871409-13871428 Msa1314770:CDS 45.0%
GGACAGTTATCAGCATGAGA+AGG - chr8_4:13871527-13871546 None:intergenic 45.0%
ATCTCAAACCAAACAGGCCT+TGG + chr8_4:13871834-13871853 Msa1314770:intron 45.0%
TCATGAAACCAAGGCCTGTT+TGG - chr8_4:13871845-13871864 None:intergenic 45.0%
!! CTAGATTTGTTGGAGAGGGT+CGG + chr8_4:13871970-13871989 Msa1314770:CDS 45.0%
!! TAGATTTGTTGGAGAGGGTC+GGG + chr8_4:13871971-13871990 Msa1314770:CDS 45.0%
! TCCCTCTGAAGGAAGAATTG+AGG + chr8_4:13872025-13872044 Msa1314770:CDS 45.0%
GCCTCAATTCTTCCTTCAGA+GGG - chr8_4:13872029-13872048 None:intergenic 45.0%
ACAGGCTTGTGATTCAGTCT+TGG - chr8_4:13872051-13872070 None:intergenic 45.0%
AGATACTTGTCAGGTATGGC+TGG - chr8_4:13872123-13872142 None:intergenic 45.0%
GGTCAGATACTTGTCAGGTA+TGG - chr8_4:13872127-13872146 None:intergenic 45.0%
TTCAGCGAATGTATGATCGC+GGG + chr8_4:13872163-13872182 Msa1314770:CDS 45.0%
GGGCTAACTGTATCAAGCAT+GGG + chr8_4:13872183-13872202 Msa1314770:CDS 45.0%
! GGGGAGGAGTATGAAAAGAC+GGG - chr8_4:13868329-13868348 None:intergenic 50.0%
! AGAGAGAAGCACGCAAGAGA+TGG - chr8_4:13868429-13868448 None:intergenic 50.0%
GTAGAACACACACTACTCGG+TGG - chr8_4:13868780-13868799 None:intergenic 50.0%
TACGTCTGGGAAATCGGTGA+TGG + chr8_4:13868875-13868894 Msa1314770:CDS 50.0%
ACGTCTGGGAAATCGGTGAT+GGG + chr8_4:13868876-13868895 Msa1314770:CDS 50.0%
!! ACTTCGAGTTTTTCCGGTGG+TGG + chr8_4:13868954-13868973 Msa1314770:CDS 50.0%
ATCTTCATCACCACCACCAC+CGG - chr8_4:13868970-13868989 None:intergenic 50.0%
! CGACGAAGTTTGGTGGATCT+TGG + chr8_4:13869033-13869052 Msa1314770:CDS 50.0%
TGTAGTAGTAGCATGGGTGC+CGG + chr8_4:13869101-13869120 Msa1314770:CDS 50.0%
! GGTACCGGAACAATTCGATC+AGG + chr8_4:13869128-13869147 Msa1314770:CDS 50.0%
CCTCCCTGATCGAATTGTTC+CGG - chr8_4:13869135-13869154 None:intergenic 50.0%
CGGAACAATTCGATCAGGGA+GGG + chr8_4:13869133-13869152 Msa1314770:CDS 50.0%
GGAACAATTCGATCAGGGAG+GGG + chr8_4:13869134-13869153 Msa1314770:CDS 50.0%
! ACTGGTGTTAGATTACGCGG+TGG + chr8_4:13869230-13869249 Msa1314770:CDS 50.0%
!! GGTGGTGGTGGTGAATTTGA+TGG + chr8_4:13869254-13869273 Msa1314770:CDS 50.0%
!! GATGGTGTTGGTGGTGATTC+TGG + chr8_4:13869272-13869291 Msa1314770:CDS 50.0%
GATGTACCCCGAACAATTGG+TGG - chr8_4:13869939-13869958 None:intergenic 50.0%
CTCTTGCATCTGCCATTGCA+AGG - chr8_4:13870443-13870462 None:intergenic 50.0%
CTTTGCAAACCTCTGCTGCT+TGG - chr8_4:13870529-13870548 None:intergenic 50.0%
CAAGCAGCAGAGGTTTGCAA+AGG + chr8_4:13870527-13870546 Msa1314770:CDS 50.0%
AGCGCAGCCCATAAATGTCA+TGG - chr8_4:13871048-13871067 None:intergenic 50.0%
! TGTTCACCGGTTATGGTCTG+AGG + chr8_4:13871111-13871130 Msa1314770:CDS 50.0%
CATGCACCTCAGACCATAAC+CGG - chr8_4:13871120-13871139 None:intergenic 50.0%
! GGTTATGGTCTGAGGTGCAT+GGG + chr8_4:13871119-13871138 Msa1314770:CDS 50.0%
ATCTCTGCACACTGTGGTGA+TGG + chr8_4:13871268-13871287 Msa1314770:CDS 50.0%
TCTCTGCACACTGTGGTGAT+GGG + chr8_4:13871269-13871288 Msa1314770:CDS 50.0%
TTGGATTCGCTGCTCATTGG+AGG + chr8_4:13871354-13871373 Msa1314770:CDS 50.0%
TGAGAAGGGAACTTGCAAGG+TGG - chr8_4:13871512-13871531 None:intergenic 50.0%
GCATGAGAAGGGAACTTGCA+AGG - chr8_4:13871515-13871534 None:intergenic 50.0%
GGCCTCAATTCTTCCTTCAG+AGG - chr8_4:13872030-13872049 None:intergenic 50.0%
CGGGCTAACTGTATCAAGCA+TGG + chr8_4:13872182-13872201 Msa1314770:CDS 50.0%
TACTGCTACTGCAAGCAGCA+TGG + chr8_4:13872209-13872228 Msa1314770:CDS 50.0%
ATCTTCGTCACCGGCGTCTA+CGG + chr8_4:13868839-13868858 Msa1314770:CDS 55.0%
GGCGTCTACGTCTGGGAAAT+CGG + chr8_4:13868869-13868888 Msa1314770:CDS 55.0%
!! TCTGGGAAATCGGTGATGGG+TGG + chr8_4:13868879-13868898 Msa1314770:CDS 55.0%
! ACATGCTGCTTCACCACCGT+CGG - chr8_4:13868927-13868946 None:intergenic 55.0%
!! TCGAGTTTTTCCGGTGGTGG+TGG + chr8_4:13868957-13868976 Msa1314770:CDS 55.0%
AATTGTTCCGGTACCCGCAC+CGG - chr8_4:13869123-13869142 None:intergenic 55.0%
CCGGAACAATTCGATCAGGG+AGG + chr8_4:13869132-13869151 Msa1314770:CDS 55.0%
GGTGTTAGATTACGCGGTGG+TGG + chr8_4:13869233-13869252 Msa1314770:CDS 55.0%
! GTTAGATTACGCGGTGGTGG+TGG + chr8_4:13869236-13869255 Msa1314770:CDS 55.0%
! AACCTCTGCTGCTTGGCAAC+CGG - chr8_4:13870522-13870541 None:intergenic 55.0%
GCACCTTTGGCCAACCGATT+AGG + chr8_4:13870567-13870586 Msa1314770:CDS 55.0%
! CGGTTATGGTCTGAGGTGCA+TGG + chr8_4:13871118-13871137 Msa1314770:CDS 55.0%
!! CACACTGTGGTGATGGGTGA+AGG + chr8_4:13871275-13871294 Msa1314770:CDS 55.0%
!! TGTGGTGATGGGTGAAGGCA+AGG + chr8_4:13871280-13871299 Msa1314770:CDS 55.0%
! CGCTGCTCATTGGAGGTACA+AGG + chr8_4:13871361-13871380 Msa1314770:CDS 55.0%
! AGATGGTTGAGTGGGCTCGA+TGG + chr8_4:13871417-13871436 Msa1314770:CDS 55.0%
! GATGGTTGAGTGGGCTCGAT+GGG + chr8_4:13871418-13871437 Msa1314770:CDS 55.0%
ACTCATTGCTTCGCACTGCC+AGG - chr8_4:13871450-13871469 None:intergenic 55.0%
TTACAAGCCTGATTGCGGGC+AGG + chr8_4:13871553-13871572 Msa1314770:CDS 55.0%
GCTACTGCAAGCAGCATGGT+TGG + chr8_4:13872213-13872232 Msa1314770:CDS 55.0%
!! TAGTAGCATGGGTGCCGGTG+CGG + chr8_4:13869106-13869125 Msa1314770:CDS 60.0%
! CGATCAGGGAGGGGAAGTAC+TGG + chr8_4:13869143-13869162 Msa1314770:CDS 60.0%
!! TCAGGGAGGGGAAGTACTGG+TGG + chr8_4:13869146-13869165 Msa1314770:CDS 60.0%
!! GGAGGGGAAGTACTGGTGGT+GGG + chr8_4:13869150-13869169 Msa1314770:CDS 60.0%
!! AGATTACGCGGTGGTGGTGG+TGG + chr8_4:13869239-13869258 Msa1314770:CDS 60.0%
! TACCGGTTGCCAAGCAGCAG+AGG + chr8_4:13870517-13870536 Msa1314770:CDS 60.0%
AAGCCTGATTGCGGGCAGGA+TGG + chr8_4:13871557-13871576 Msa1314770:CDS 60.0%
!! AGTAGCATGGGTGCCGGTGC+GGG + chr8_4:13869107-13869126 Msa1314770:CDS 65.0%
!! GGGAGGGGAAGTACTGGTGG+TGG + chr8_4:13869149-13869168 Msa1314770:CDS 65.0%
!! TTACGCGGTGGTGGTGGTGG+TGG + chr8_4:13869242-13869261 Msa1314770:CDS 65.0%
!! GGGCTCGATGGGTTGTCACC+TGG + chr8_4:13871429-13871448 Msa1314770:CDS 65.0%
GGTCCATCCTGCCCGCAATC+AGG - chr8_4:13871563-13871582 None:intergenic 65.0%
GTCACCGGCGTCTACGGCGA+CGG + chr8_4:13868845-13868864 Msa1314770:CDS 70.0%
CGACGGCGGCGTCTACGTCT+GGG + chr8_4:13868862-13868881 Msa1314770:CDS 70.0%
!! ATGGGTGCCGGTGCGGGTAC+CGG + chr8_4:13869113-13869132 Msa1314770:CDS 70.0%
GGGTCGGGCGAGCAAGCTGT+AGG + chr8_4:13871986-13872005 Msa1314770:CDS 70.0%
ACCGGCGTCTACGGCGACGG+CGG + chr8_4:13868848-13868867 Msa1314770:CDS 75.0%
GCGACGGCGGCGTCTACGTC+TGG + chr8_4:13868861-13868880 Msa1314770:CDS 75.0%
! GCCGCCGTCGCCGTAGACGC+CGG - chr8_4:13868852-13868871 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 13868294 13872425 13868294 ID=Msa1314770;Name=Msa1314770
chr8_4 mRNA 13868294 13872425 13868294 ID=Msa1314770-mRNA-1;Parent=Msa1314770;Name=Msa1314770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=450|0.8|0.83|1|1|1|6|180|722
chr8_4 exon 13868294 13869472 13868294 ID=Msa1314770-mRNA-1:exon:5206;Parent=Msa1314770-mRNA-1
chr8_4 exon 13869564 13869749 13869564 ID=Msa1314770-mRNA-1:exon:5207;Parent=Msa1314770-mRNA-1
chr8_4 exon 13870351 13870811 13870351 ID=Msa1314770-mRNA-1:exon:5208;Parent=Msa1314770-mRNA-1
chr8_4 exon 13871021 13871179 13871021 ID=Msa1314770-mRNA-1:exon:5209;Parent=Msa1314770-mRNA-1
chr8_4 exon 13871262 13871583 13871262 ID=Msa1314770-mRNA-1:exon:5210;Parent=Msa1314770-mRNA-1
chr8_4 exon 13871934 13872425 13871934 ID=Msa1314770-mRNA-1:exon:5211;Parent=Msa1314770-mRNA-1
chr8_4 five_prime_UTR 13868294 13868743 13868294 ID=Msa1314770-mRNA-1:five_prime_utr;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13868744 13869472 13868744 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13869564 13869749 13869564 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13870351 13870811 13870351 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13871021 13871179 13871021 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13871262 13871583 13871262 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 CDS 13871934 13872245 13871934 ID=Msa1314770-mRNA-1:cds;Parent=Msa1314770-mRNA-1
chr8_4 three_prime_UTR 13872246 13872425 13872246 ID=Msa1314770-mRNA-1:three_prime_utr;Parent=Msa1314770-mRNA-1
Gene Sequence

>Msa1314770

ATGGCGGTTTCAACTATAGCGTTATACGCGAGTCCACCGAGTAGTGTGTGTTCTACACCGCATCAGATTAACTATGATTTCGAATTAGGATCTAGATCTTCGTCACCGGCGTCTACGGCGACGGCGGCGTCTACGTCTGGGAAATCGGTGATGGGTGGTTTATCGTGTTTGTTTTCATCTCCGACGGTGGTGAAGCAGCATGTTCCTTTTACTTCGAGTTTTTCCGGTGGTGGTGGTGATGAAGATGAATTGAAGGAGCTGAGTAGTTCGTTTTCGTATTCATTTTCACCGACGAAGTTTGGTGGATCTTGGAAGAGAGATCATAGTCCAGTTTCGGTTTTTCAGTGTCCTGTTTCGTGTAGTAGTAGCATGGGTGCCGGTGCGGGTACCGGAACAATTCGATCAGGGAGGGGAAGTACTGGTGGTGGGTTTTTTGATGGGTTTGTGAGAAGTGCTTTGGGTTCTTCTTGTTTGGATTATGATTCTACTGGTGTTAGATTACGCGGTGGTGGTGGTGGTGGTGAATTTGATGGTGTTGGTGGTGATTCTGGAATTGTGGATGAGTTGACTTTTAATTTGGATGATACTTTTGTGGAGGGTTGTGTTGGTATTGAGATTGAGCCTTATGCTAAGAAGTTGTTGATGAATGCTCAGTTAAGACATAAGATCTTTTGTGAAGAGTTTGTTATTAAGGCCTTTTGTGAAGCTGAGAAAGCTCATAGAGGACAGATGCGAGCTAGTGGCGATCCGTATTTGCAGCATTGTTTGGAAACTGCTGTGTTGTTGGCTTTGATCGGTGCGAATTCAACAGTAGTTGCTGCTGGGCTTTTGCATGATACAGTTGATGATGCATTTCTTACTTATGATTATATATACGGGATGTTTGGAGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGACAATAATACAGCTAGCAAATCTGTTGAAGCTGACCGCCTGCATACAATGTTCCTTGCAATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCTGATCGATTACATAATATGATGACACTAGATGCATTACCGGTTGCCAAGCAGCAGAGGTTTGCAAAGGAAACTTTGGAGATTTTTGCACCTTTGGCCAACCGATTAGGAATAGCTAATTGGAAGGAACAATTAGAAAATTTATGTTTTAAGCATCTCAACCCTGTACAGCACAAAGAGCTTTCGTCAAAGCTTGTGGAATCGTATGATGACGCAATGATTGCTTCTGCAATAGAAAGATTAGAGCAAGCACTCAAAGATGAAGGCATTTCTTATCATGTCATTTCTGGACGGCACAAGAGCTTGTATAGCGTTTATTGCAAAATATTAAAGAAAAAACTAAGCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGATAAGGAGGAAGATTGTTACAAAGCCTTAGAAGTTGTTCACCGGTTATGGTCTGAGGTGCATGGGAAACTGAAAGATTACATACATTGCCCCAAGTTCAATGGTTATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGAACAAAAGATATGCATTTGCAAGCAGAATTTGGATTCGCTGCTCATTGGAGGTACAAGGAAGATCATTGTCAACTTTCTTCATATGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAAAGATTCCACTTCTGTTGGATTTGTCGATTCAATCAAGCCACCTTGCAAGTTCCCTTCTCATGCTGATAACTGTCCATATTCTTACAAGCCTGATTGCGGGCAGGATGGACCTATGTCTGTCCAAGAATTTTGTGCAAACTCGACAGTACTAGATTTGTTGGAGAGGGTCGGGCGAGCAAGCTGTAGGTTGACAACATATAGGTTCCCTCTGAAGGAAGAATTGAGGCCAAGACTGAATCACAAGCCTGTAAGTGATCCAAATTGCAAGTTGAAGATGGGAGATGTGATCGAGCTTACACCAGCCATACCTGACAAGTATCTGACCGAATATAGGGAAGAAATTCAGCGAATGTATGATCGCGGGCTAACTGTATCAAGCATGGGAACTACTGCTACTGCAAGCAGCATGGTTGGCACTAGTTGA

Protein sequence

>Msa1314770

MAVSTIALYASPPSSVCSTPHQINYDFELGSRSSSPASTATAASTSGKSVMGGLSCLFSSPTVVKQHVPFTSSFSGGGGDEDELKELSSSFSYSFSPTKFGGSWKRDHSPVSVFQCPVSCSSSMGAGAGTGTIRSGRGSTGGGFFDGFVRSALGSSCLDYDSTGVRLRGGGGGGEFDGVGGDSGIVDELTFNLDDTFVEGCVGIEIEPYAKKLLMNAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTVDDAFLTYDYIYGMFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGIANWKEQLENLCFKHLNPVQHKELSSKLVESYDDAMIASAIERLEQALKDEGISYHVISGRHKSLYSVYCKILKKKLSIDDIHDIYGLRLIVDKEEDCYKALEVVHRLWSEVHGKLKDYIHCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQLSSYVLQMVEWARWVVTWQCEAMSKDSTSVGFVDSIKPPCKFPSHADNCPYSYKPDCGQDGPMSVQEFCANSTVLDLLERVGRASCRLTTYRFPLKEELRPRLNHKPVSDPNCKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSSMGTTATASSMVGTS*