AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290970 MtrunA17_Chr2g0322731 99.322 738 4 1 1 738 34 770 0.0 1521
Msa0290970 MtrunA17_Chr4g0024351 84.853 746 93 10 1 738 1 734 0.0 1249
Msa0290970 MtrunA17_Chr8g0350321 55.689 747 281 11 26 736 77 809 0.0 798
Msa0290970 MtrunA17_Chr7g0246631 56.860 707 258 13 61 736 87 777 0.0 785
Msa0290970 MtrunA17_Chr1g0203671 52.439 738 305 11 34 733 60 789 0.0 753
Msa0290970 MtrunA17_Chr6g0481041 49.364 707 316 14 63 734 25 724 0.0 681
Msa0290970 MtrunA17_Chr5g0394111 50.285 702 269 13 46 733 11 646 0.0 646
Msa0290970 MtrunA17_Chr5g0410711 44.490 735 357 14 37 733 57 778 0.0 633
Msa0290970 MtrunA17_Chr2g0331581 45.361 679 329 9 71 736 143 792 0.0 617
Msa0290970 MtrunA17_Chr6g0472471 43.624 745 361 14 34 733 35 765 0.0 601
Msa0290970 MtrunA17_Chr7g0224451 43.067 476 206 11 67 530 16 438 4.30e-122 372
Msa0290970 MtrunA17_Chr2g0292731 36.727 501 298 8 250 737 58 552 9.92e-105 331
Msa0290970 MtrunA17_Chr2g0292741 36.505 515 314 8 231 737 30 539 2.28e-102 324
Msa0290970 MtrunA17_Chr7g0224491 47.335 319 131 8 428 734 1 294 4.35e-84 268
Msa0290970 MtrunA17_Chr7g0224481 41.351 370 160 9 67 425 16 339 6.99e-82 264
Msa0290970 MtrunA17_Chr2g0292761 31.208 596 351 15 146 735 1 543 1.42e-75 254
Msa0290970 MtrunA17_Chr2g0319671 41.860 215 114 2 262 476 65 268 5.43e-50 177
Msa0290970 MtrunA17_Chr1g0205981 43.367 196 99 3 122 313 1 188 5.26e-41 149
Msa0290970 MtrunA17_Chr5g0419821 48.413 126 64 1 63 187 29 154 4.29e-36 134
Msa0290970 MtrunA17_Chr2g0319701 39.207 227 125 6 514 734 5 224 9.20e-36 135
Msa0290970 MtrunA17_Chr2g0319681 36.522 230 137 4 510 734 1 226 2.32e-35 134
Msa0290970 MtrunA17_Chr2g0319691 52.101 119 57 0 368 486 1 119 5.11e-35 130
Msa0290970 MtrunA17_Chr3g0140351 22.602 761 386 28 70 734 20 673 5.72e-27 117
Msa0290970 MtrunA17_Chr7g0224461 47.107 121 46 3 624 733 1 114 2.75e-23 95.5
Msa0290970 MtrunA17_Chr7g0224431 35.484 155 60 3 283 436 6 121 1.69e-16 76.3
Msa0290970 MtrunA17_Chr2g0304191 32.061 131 87 1 264 392 1 131 2.80e-16 76.3
Msa0290970 MtrunA17_Chr4g0028991 22.846 499 280 17 312 734 212 681 2.30e-15 80.5
Msa0290970 MtrunA17_Chr4g0028991 31.405 121 69 3 50 159 8 125 4.52e-13 73.2
Msa0290970 MtrunA17_Chr1g0179581 36.047 86 52 1 65 150 26 108 1.14e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290970 AT1G05230.8 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.4 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.9 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.10 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.7 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.11 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.2 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.6 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.5 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.1 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290970 AT1G05230.3 76.685 742 146 8 1 738 1 719 0.0 1131
Msa0290970 AT4G04890.2 73.705 753 168 10 1 737 1 739 0.0 1124
Msa0290970 AT4G04890.1 73.705 753 168 10 1 737 1 739 0.0 1124
Msa0290970 AT4G21750.2 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290970 AT4G21750.1 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290970 AT4G21750.3 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290970 AT4G21750.4 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290970 AT1G05230.12 75.444 619 132 6 1 615 1 603 0.0 942
Msa0290970 AT2G32370.1 53.846 702 288 12 42 730 39 717 0.0 745
Msa0290970 AT3G61150.1 51.135 749 316 8 24 733 66 803 0.0 739
Msa0290970 AT4G00730.1 53.709 728 300 13 26 736 94 801 0.0 733
Msa0290970 AT1G73360.1 47.845 696 338 9 63 738 28 718 0.0 643
Msa0290970 AT1G17920.2 47.076 701 334 12 48 734 5 682 0.0 618
Msa0290970 AT1G17920.1 47.076 701 334 12 48 734 5 682 0.0 618
Msa0290970 AT5G52170.2 45.504 734 329 15 16 733 5 683 0.0 609
Msa0290970 AT5G52170.3 45.640 734 323 17 16 733 5 678 0.0 605
Msa0290970 AT5G52170.1 45.640 734 323 17 16 733 5 678 0.0 605
Msa0290970 AT5G46880.3 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290970 AT5G46880.1 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290970 AT5G46880.2 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290970 AT1G79840.1 42.714 700 337 14 55 736 92 745 0.0 555
Msa0290970 AT1G79840.3 42.714 700 337 14 55 736 34 687 0.0 554
Msa0290970 AT1G79840.6 42.714 700 337 14 55 736 34 687 0.0 554
Msa0290970 AT1G79840.2 42.714 700 337 14 55 736 121 774 0.0 553
Msa0290970 AT4G17710.1 42.258 691 329 17 57 737 77 707 4.58e-172 511
Msa0290970 AT1G79840.4 43.386 567 273 12 55 611 92 620 1.31e-155 466
Msa0290970 AT3G03260.1 38.732 710 392 18 48 734 6 695 1.22e-150 455
Msa0290970 AT4G00730.2 49.167 480 212 9 26 490 94 556 3.65e-146 439
Msa0290970 AT4G25530.1 37.353 680 394 11 58 733 31 682 1.72e-144 439
Msa0290970 AT5G17320.1 34.747 731 422 19 45 736 4 718 1.36e-127 396
Msa0290970 AT1G34650.1 34.233 704 404 15 74 736 23 708 5.58e-117 368
Msa0290970 AT3G03260.2 38.532 545 314 14 48 583 6 538 8.65e-112 349
Msa0290970 AT1G79840.5 42.601 446 208 11 55 490 92 499 9.56e-110 343
Msa0290970 AT5G07260.1 26.364 550 325 17 134 672 11 491 1.21e-43 166
Msa0290970 AT5G07260.2 26.230 549 322 17 134 672 11 486 5.53e-43 164
Msa0290970 AT1G52150.3 21.925 748 409 29 70 734 17 672 5.83e-22 102
Msa0290970 AT1G52150.1 21.925 748 409 29 70 734 17 672 8.77e-22 101
Msa0290970 AT1G52150.2 21.896 749 409 29 70 734 17 673 1.08e-21 101
Msa0290970 AT1G30490.1 22.638 508 294 18 298 734 199 678 1.28e-15 81.6
Msa0290970 AT4G26920.1 21.414 481 258 14 264 728 72 448 8.39e-14 75.1
Msa0290970 AT5G60690.1 25.000 304 192 10 298 584 190 474 2.66e-11 67.8
Msa0290970 AT5G60690.1 27.273 187 92 6 46 201 11 184 5.02e-11 67.0

Find 243 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTACGCTTCCATTTCT+TGG 0.138519 2_3:+39095466 None:intergenic
CATCATCTGAAAGCCATTTA+AGG 0.155720 2_3:-39096433 Msa0290970:five_prime_UTR
AAAATTTCCCCTAGGTTATA+TGG 0.155848 2_3:-39093281 Msa0290970:intron
AACAATAACGTTGGTGTCTT+TGG 0.194570 2_3:-39096283 Msa0290970:five_prime_UTR
CACTTAAAACCAGCTGGTTT+TGG 0.238060 2_3:+39094078 None:intergenic
TAGCAATATGTGCCATTTCT+TGG 0.247675 2_3:+39091923 None:intergenic
AAAGGTAGTAGATTGTTTAA+AGG 0.257548 2_3:+39097177 None:intergenic
ATATTCCTCTTCATTGAGTA+TGG 0.259965 2_3:+39094128 None:intergenic
GACTGTTGCATTTCAAATAT+TGG 0.260496 2_3:-39091302 Msa0290970:CDS
GGCAGTAGTGGATGTTTCTT+TGG 0.266653 2_3:-39093496 Msa0290970:CDS
TCCTTCCTTTGCTTGTCATC+AGG 0.267823 2_3:+39095281 None:intergenic
AAGGGAAAAGCATTGCATTT+TGG 0.268583 2_3:-39091032 Msa0290970:three_prime_UTR
AATTCATCTTCACGGATTCT+TGG 0.284298 2_3:+39095606 None:intergenic
CACACGTGGACAACACTTTC+AGG 0.288181 2_3:-39092860 Msa0290970:CDS
TACAAGCAGCTTGTTAGTTC+TGG 0.292041 2_3:-39093216 Msa0290970:CDS
GGCTTATATTCAAGACTATA+TGG 0.292382 2_3:-39090782 Msa0290970:three_prime_UTR
AAGGAACTGAGCAGAGAGTT+AGG 0.301450 2_3:-39095263 Msa0290970:CDS
AAGGTAGTAGATTGTTTAAA+GGG 0.305251 2_3:+39097178 None:intergenic
ACAATGCCAGCTGGTCTTCC+TGG 0.308126 2_3:+39092788 None:intergenic
AGCCATTACAAGTGAAGTTT+TGG 0.309939 2_3:-39095235 Msa0290970:CDS
GTTATGGAAAGTTGGGTATA+TGG 0.311170 2_3:+39097100 None:intergenic
GTTGCATTTACTATTATCTA+AGG 0.315748 2_3:+39090879 None:intergenic
GTCTTTCACATTGTCGATCT+AGG 0.317831 2_3:+39093160 None:intergenic
AATCAAGAAGCTGCTAATTC+TGG 0.319183 2_3:-39095549 Msa0290970:CDS
GAACTCGGCATTGGTGGTTT+CGG 0.320296 2_3:-39094330 Msa0290970:CDS
TTGTACTGTTGAGAGGATTA+AGG 0.330586 2_3:-39091215 Msa0290970:CDS
TACATATCTCCTCCCATTCC+TGG 0.333263 2_3:+39094300 None:intergenic
AGGATTAAGGCTTCTTTGTC+TGG 0.337763 2_3:-39091202 Msa0290970:CDS
GCAACCAGAAGGCCTTCTTC+TGG 0.341248 2_3:+39093443 None:intergenic
GGAGGAGGTGTTGGTGAAAC+TGG 0.354741 2_3:-39091346 Msa0290970:CDS
TGTCCAGCTTCCATTAGATT+TGG 0.355568 2_3:+39095693 None:intergenic
TTTGGTGTGGTTGTCCCATC+TGG 0.359343 2_3:+39091370 None:intergenic
CGTTACATTAGATGACTTGA+TGG 0.359804 2_3:+39091166 None:intergenic
GTAATATCAACATGTTGCTT+TGG 0.360562 2_3:+39091524 None:intergenic
TTCTCTAAACCTCATGTTAT+CGG 0.361729 2_3:+39095034 None:intergenic
GATTGAAAACAATAAGCATT+TGG 0.362525 2_3:-39095746 Msa0290970:five_prime_UTR
GACTGAGAGGATTAAGGTTC+GGG 0.364771 2_3:-39090911 Msa0290970:three_prime_UTR
TATAGATATATTGTCTTAGA+AGG 0.366422 2_3:+39090728 None:intergenic
CCTTCCTTTGCTTGTCATCA+GGG 0.367415 2_3:+39095282 None:intergenic
ATTGCTAATGGAAGAGATAC+TGG 0.369741 2_3:-39091907 Msa0290970:CDS
GGAAGAAGTGCTACATAATC+TGG 0.371226 2_3:+39091412 None:intergenic
GTGCTATCAACTGGGGTGGC+AGG 0.373210 2_3:-39093775 Msa0290970:CDS
TTCGACAGTGCTACAAAATC+TGG 0.373686 2_3:-39095582 Msa0290970:CDS
TTGAGGAAGTTATGGAAAGT+TGG 0.374900 2_3:+39097092 None:intergenic
TATGTAGCACTTCTTCCATC+TGG 0.375152 2_3:-39091406 Msa0290970:CDS
GGCAAAACTTTCTCTTGGTT+CGG 0.376070 2_3:-39091263 Msa0290970:CDS
CTGAAATTGAGTAGACAAAA+TGG 0.376478 2_3:+39090522 None:intergenic
CACTGGCTTTCCTACGTACT+TGG 0.377299 2_3:+39094401 None:intergenic
GTTAGTTCTGGACATGCATT+TGG 0.380690 2_3:-39093204 Msa0290970:CDS
CTGGATCTGGCAGAAGGACT+AGG 0.382500 2_3:+39093462 None:intergenic
ACTGAGGACTGAGAGGATTA+AGG 0.383946 2_3:-39090917 Msa0290970:three_prime_UTR
GAATGTATACCTCTTCTCTA+AGG 0.384454 2_3:+39094916 None:intergenic
ACACTGGAAGTGCTATCAAC+TGG 0.386707 2_3:-39093784 Msa0290970:CDS
CTGGGTCATCTACACTCTTA+CGG 0.388294 2_3:+39092807 None:intergenic
GCAATGAATGTGGTTCTAAA+TGG 0.388547 2_3:-39091442 Msa0290970:CDS
TGAGGAAGTTATGGAAAGTT+GGG 0.392762 2_3:+39097093 None:intergenic
GAAATGGCACATATTGCTAA+TGG 0.396088 2_3:-39091919 Msa0290970:CDS
ACATACTCTTTCTCCCATCT+TGG 0.396801 2_3:+39092942 None:intergenic
ACTCATTGGAATGGCACAAA+TGG 0.397042 2_3:-39094187 Msa0290970:CDS
GCAGTTGGTCCACCACAATT+AGG 0.400312 2_3:+39094990 None:intergenic
GATTCTTCTGTCAGCTTTAG+CGG 0.401217 2_3:+39096468 None:intergenic
ATAACCTTTGAGTAGCCATT+TGG 0.403234 2_3:+39093405 None:intergenic
AAAGCACAAATGACAATAGA+AGG 0.404339 2_3:+39090639 None:intergenic
ACTGCTAGCTCAATTATCAT+TGG 0.404803 2_3:+39094225 None:intergenic
ATTTCAAATATTGGTTGATT+CGG 0.406456 2_3:-39091293 Msa0290970:CDS
AAATTTCCCCTAGGTTATAT+GGG 0.407762 2_3:-39093280 Msa0290970:intron
CTTTGGTTGCCTACACTTGA+AGG 0.408059 2_3:-39094156 Msa0290970:CDS
CTTTGCTTGTCATCAGGGTG+TGG 0.418881 2_3:+39095287 None:intergenic
TGAGAGGACAAAGGAATTGA+AGG 0.418990 2_3:+39097231 None:intergenic
TGGGTCATCTACACTCTTAC+GGG 0.423400 2_3:+39092808 None:intergenic
CAGCTTCCATTAGATTTGGC+TGG 0.429412 2_3:+39095697 None:intergenic
TCACCAACACCTCCTCCATT+TGG 0.438216 2_3:+39091352 None:intergenic
AATGTTCCAGCCAAATCTAA+TGG 0.438842 2_3:-39095703 Msa0290970:CDS
CCAACGGCAAAACTTTCTCT+TGG 0.441531 2_3:-39091268 Msa0290970:CDS
GCACAGGAGCTGATGATGTA+AGG 0.441905 2_3:-39092838 Msa0290970:CDS
AGCAACATGCTGATGGAACT+TGG 0.445791 2_3:-39093518 Msa0290970:CDS
CCTCTAGAACTCGGCATTGG+TGG 0.447065 2_3:-39094336 Msa0290970:CDS
TTCTCTTGGTTCGGTTGCTA+CGG 0.447827 2_3:-39091254 Msa0290970:CDS
AGAAGGCCTTCTTCTGGATC+TGG 0.453379 2_3:+39093449 None:intergenic
AACCAAAACTTCACTTGTAA+TGG 0.453525 2_3:+39095233 None:intergenic
AACCTTAAAGAAGGATAAAA+CGG 0.454387 2_3:+39090564 None:intergenic
ATGAGGAGGCAAGAGAACTT+AGG 0.455868 2_3:-39091006 Msa0290970:three_prime_UTR
ACAGCATCAGATCCAAGAAA+TGG 0.457226 2_3:-39095478 Msa0290970:CDS
TGAGCTAGCAGTTGCTGCTA+TGG 0.464050 2_3:-39094214 Msa0290970:CDS
TTCTTGGACAACTCCACCAT+TGG 0.466612 2_3:+39091939 None:intergenic
GGACTGAGAGGATTAAGGTT+CGG 0.467189 2_3:-39090912 Msa0290970:three_prime_UTR
GATGGGACAACCACACCAAA+TGG 0.467628 2_3:-39091367 Msa0290970:CDS
CTCTCTCTAGTTGGCACAAG+TGG 0.472336 2_3:+39093561 None:intergenic
TGGTGGAGTTGTCCAAGAAA+TGG 0.474459 2_3:-39091935 Msa0290970:CDS
CTCTTGTGCAGTTAAGAAGA+AGG 0.474651 2_3:-39091058 Msa0290970:intron
GGAGGAGATATGTATGGAGC+TGG 0.474886 2_3:-39094291 Msa0290970:CDS
TCAATGAAGAGGAATATGTT+AGG 0.476700 2_3:-39094122 Msa0290970:CDS
GGGCGAGGAGGAACCGATGA+AGG 0.476736 2_3:+39094357 None:intergenic
ACAAAATAACTCTCTCTAGT+TGG 0.477153 2_3:+39093552 None:intergenic
TTCGGAGGACAACCAGGAAT+GGG 0.477190 2_3:-39094312 Msa0290970:CDS
TCTTTCACATTGTCGATCTA+GGG 0.482839 2_3:+39093161 None:intergenic
TGTCGAATAATTCATCTTCA+CGG 0.483352 2_3:+39095598 None:intergenic
TCCTACGTACTTGGCAGCAA+TGG 0.502677 2_3:+39094410 None:intergenic
GAGAGTTGTACGGATTCAAC+AGG 0.503171 2_3:-39091499 Msa0290970:CDS
CGCCCTCTAGAACTCGGCAT+TGG 0.503902 2_3:-39094339 Msa0290970:CDS
AGAAGAAAAGAAGATGAAGA+AGG 0.505148 2_3:+39097208 None:intergenic
CACTGGAAGTGCTATCAACT+GGG 0.506183 2_3:-39093783 Msa0290970:CDS
ATTGAATGCATGTTACTAGC+TGG 0.506437 2_3:+39096319 None:intergenic
AGATCCAGAAGAAGGCCTTC+TGG 0.506911 2_3:-39093447 Msa0290970:CDS
GGCGAGGAGGAACCGATGAA+GGG 0.507726 2_3:+39094358 None:intergenic
TTCATCTCTCTCTCTATCCC+AGG 0.507918 2_3:-39096254 Msa0290970:intron
CAATGCCAGCTGGTCTTCCT+GGG 0.508862 2_3:+39092789 None:intergenic
CTCATTGGAATGGCACAAAT+GGG 0.511283 2_3:-39094186 Msa0290970:CDS
CAGAGAAAACTGTGGACCAT+TGG 0.512102 2_3:+39093827 None:intergenic
ACATTTCAAAACCTTAAAGA+AGG 0.512833 2_3:+39090555 None:intergenic
TTAATTCAAGAAATGCCAAA+TGG 0.513645 2_3:-39093420 Msa0290970:CDS
TTTCGGAGGACAACCAGGAA+TGG 0.514423 2_3:-39094313 Msa0290970:CDS
TGAGGAGGCAAGAGAACTTA+GGG 0.514455 2_3:-39091005 Msa0290970:three_prime_UTR
TGCTATCAACTGGGGTGGCA+GGG 0.518257 2_3:-39093774 Msa0290970:CDS
AGGAACTGAGCAGAGAGTTA+GGG 0.519123 2_3:-39095262 Msa0290970:CDS
GCTGCTATGGAGGAACTCAT+TGG 0.520147 2_3:-39094201 Msa0290970:CDS
TTGTGGTTTATAAGAACCAA+TGG 0.522609 2_3:-39093843 Msa0290970:intron
GCTTCACACTTAAAACCAGC+TGG 0.523425 2_3:+39094072 None:intergenic
TGAAGAAGGTGAGAGGACAA+AGG 0.524909 2_3:+39097222 None:intergenic
TCCACTACTCTCCCCTTCAT+CGG 0.525289 2_3:-39094370 Msa0290970:CDS
TTCATTGCAACTATGTCTAC+AGG 0.525326 2_3:+39091457 None:intergenic
CAGCCAAATCTAATGGAAGC+TGG 0.529949 2_3:-39095696 Msa0290970:CDS
TGTGGGAATGTTTGTTGCCA+TGG 0.531917 2_3:+39093128 None:intergenic
GTATACCTCTTCTCTAAGGC+GGG 0.534397 2_3:+39094920 None:intergenic
GAACAAACGTACTCAAATGA+AGG 0.534903 2_3:-39095207 Msa0290970:intron
TTTCCCACTTACCAAGAGGA+AGG 0.535363 2_3:+39096940 None:intergenic
GATATTACAAGAGAGTTGTA+CGG 0.536286 2_3:-39091509 Msa0290970:CDS
CACAAATGGGTGATCCACTT+TGG 0.540052 2_3:-39094173 Msa0290970:CDS
GCGAGGAGGAACCGATGAAG+GGG 0.541185 2_3:+39094359 None:intergenic
GAAATTAACCACTGTTTGCA+TGG 0.541790 2_3:+39090599 None:intergenic
AAAGAAATAGAGTGAACGGA+TGG 0.543476 2_3:+39097261 None:intergenic
GACATTTCTCCGATGGCAGT+TGG 0.544696 2_3:+39094975 None:intergenic
AGTAACATGCATTCAATGAT+CGG 0.546113 2_3:-39096313 Msa0290970:five_prime_UTR
AAATTCCCGCCTTAGAGAAG+AGG 0.547209 2_3:-39094925 Msa0290970:intron
CTAGTTGGCACAAGTGGTGA+AGG 0.548358 2_3:+39093567 None:intergenic
GCTTCTTGTCCTAATTGTGG+TGG 0.548941 2_3:-39094999 Msa0290970:CDS
CTCAGTTGGTCGTTCTGAGA+AGG 0.549427 2_3:+39090934 None:intergenic
CTCGGCATTGGTGGTTTCGG+AGG 0.549851 2_3:-39094327 Msa0290970:CDS
GGAATGGGAGGAGATATGTA+TGG 0.550014 2_3:-39094297 Msa0290970:CDS
GGTGAAACTGGACATGGTGG+TGG 0.551703 2_3:-39091334 Msa0290970:CDS
TTATTGCTTGTACTGTTGAG+AGG 0.553910 2_3:-39091222 Msa0290970:CDS
CCACCAATGCCGAGTTCTAG+AGG 0.555033 2_3:+39094336 None:intergenic
ATTGGTTGATTCGGTTCCAA+CGG 0.555616 2_3:-39091284 Msa0290970:CDS
ATCAAACGACATTTCTCCGA+TGG 0.559536 2_3:+39094968 None:intergenic
CTTCTGCCAGATCCAGAAGA+AGG 0.560942 2_3:-39093455 Msa0290970:CDS
ACACCAAATGGAGGAGGTGT+TGG 0.560944 2_3:-39091355 Msa0290970:CDS
CTTCTTCTGGATCTGGCAGA+AGG 0.561436 2_3:+39093456 None:intergenic
AATAGAGTGAACGGATGGAG+AGG 0.563194 2_3:+39097266 None:intergenic
TCTTGTGCAGTTAAGAAGAA+GGG 0.563569 2_3:-39091057 Msa0290970:intron
AACACCTCCTCCATTTGGTG+TGG 0.563793 2_3:+39091357 None:intergenic
GGAATTGGTCCAAAACCAGC+TGG 0.564202 2_3:-39094087 Msa0290970:CDS
GGATTTGCTATACTTCCAGA+TGG 0.564453 2_3:-39091385 Msa0290970:CDS
CAGTTAAGAAGAAGGGCAAA+GGG 0.565908 2_3:-39091050 Msa0290970:three_prime_UTR
TATTGTAAGCAACATGCTGA+TGG 0.566221 2_3:-39093525 Msa0290970:CDS
ATGTGCATAAGCTTCTGTGC+TGG 0.567127 2_3:-39092902 Msa0290970:CDS
ATGGGTTGAGCATGTTGAAG+TGG 0.567383 2_3:-39093262 Msa0290970:CDS
TTATTTATATTTAAAACGGA+AGG 0.567607 2_3:+39090855 None:intergenic
TAGTGATAACAAACCAAGAT+GGG 0.567631 2_3:-39092955 Msa0290970:CDS
TGGATCTGGCAGAAGGACTA+GGG 0.567829 2_3:+39093463 None:intergenic
TCTTGAATTAAGCAACCAGA+AGG 0.568304 2_3:+39093432 None:intergenic
ATGCCGAGTTCTAGAGGGCG+AGG 0.568671 2_3:+39094342 None:intergenic
ATAGCAACTACCCTTCCTCT+TGG 0.569307 2_3:-39096951 Msa0290970:intron
ATGCATTTGGTGCAAAACGT+TGG 0.570053 2_3:-39093191 Msa0290970:CDS
TGTGGTGGACCAACTGCCAT+CGG 0.570061 2_3:-39094984 Msa0290970:CDS
GGTGGTTTCGGAGGACAACC+AGG 0.570493 2_3:-39094318 Msa0290970:CDS
GATGACCCAGGAAGACCAGC+TGG 0.571107 2_3:-39092794 Msa0290970:CDS
GATCTTCTTAGATCAATAAG+TGG 0.572048 2_3:-39094267 Msa0290970:CDS
AAGAAGATGAAGAAGGTGAG+AGG 0.573862 2_3:+39097215 None:intergenic
TTAGTGATAACAAACCAAGA+TGG 0.574822 2_3:-39092956 Msa0290970:intron
ATTGGTTTATCAGCTTCAGT+AGG 0.576989 2_3:+39094243 None:intergenic
TAACCTTGTTGAGATTCTCA+TGG 0.576995 2_3:-39094013 Msa0290970:CDS
CACAGGAGCTGATGATGTAA+GGG 0.577558 2_3:-39092837 Msa0290970:CDS
GCACTTAGAACAATGCCAGC+TGG 0.578109 2_3:+39092779 None:intergenic
ACCGATGAAGGGGAGAGTAG+TGG 0.579805 2_3:+39094369 None:intergenic
CCTCCTCGCCCTCTAGAACT+CGG 0.581323 2_3:-39094345 Msa0290970:CDS
AACATTCCCACAGTCGATGT+TGG 0.581462 2_3:-39093117 Msa0290970:CDS
TGTCCACGTGTGTGCTGTTG+AGG 0.582831 2_3:+39092871 None:intergenic
TAATCCTCTCAGTCCTCAGT+TGG 0.583524 2_3:+39090920 None:intergenic
TGAATGTGGTTCTAAATGGA+GGG 0.584402 2_3:-39091438 Msa0290970:CDS
TTCCCACTTACCAAGAGGAA+GGG 0.587238 2_3:+39096941 None:intergenic
TGTTGAGATTCTCATGGATG+TGG 0.587472 2_3:-39094007 Msa0290970:intron
TGGGATATCCTTTCCAATGG+TGG 0.588001 2_3:-39091952 Msa0290970:CDS
CTTTGCAGACTCAACAGGAG+AGG 0.588246 2_3:-39095100 Msa0290970:intron
CGTTTGATGAACATCACTTG+AGG 0.589246 2_3:-39094953 Msa0290970:CDS
AATGCTTCTTGTCCTAATTG+TGG 0.590261 2_3:-39095002 Msa0290970:CDS
TGATTGTGAAATATGCAAGC+TGG 0.590342 2_3:-39096352 Msa0290970:five_prime_UTR
GGATCTGATGCTGTGTATGA+CGG 0.590628 2_3:+39095487 None:intergenic
CCCTGATGACAAGCAAAGGA+AGG 0.591678 2_3:-39095282 Msa0290970:CDS
AGTAGTGGATAGCTCACCAC+TGG 0.592239 2_3:+39094384 None:intergenic
CTTCTCAGAACGACCAACTG+AGG 0.592750 2_3:-39090933 Msa0290970:three_prime_UTR
GCTAGCAGTTGCTGCTATGG+AGG 0.593019 2_3:-39094211 Msa0290970:CDS
TGGACAACACTTTCAGGCAC+AGG 0.595843 2_3:-39092854 Msa0290970:CDS
TGTATACCTCTTCTCTAAGG+CGG 0.598180 2_3:+39094919 None:intergenic
GCAACATGCTGATGGAACTT+GGG 0.599510 2_3:-39093517 Msa0290970:CDS
ATGGAACCTCCTTCAAGTGT+AGG 0.599518 2_3:+39094147 None:intergenic
GAATGTGGTTCTAAATGGAG+GGG 0.601539 2_3:-39091437 Msa0290970:CDS
GGACAACTCCACCATTGGAA+AGG 0.603145 2_3:+39091944 None:intergenic
AATGCCAAATGGCTACTCAA+AGG 0.605118 2_3:-39093409 Msa0290970:intron
TGTCTCAAGAGCAATGACAC+TGG 0.606529 2_3:-39093800 Msa0290970:CDS
ATTCCCACAGTCGATGTTGG+CGG 0.607641 2_3:-39093114 Msa0290970:intron
GGTACCGCCAACATCGACTG+TGG 0.611425 2_3:+39093110 None:intergenic
CACCAATGCCGAGTTCTAGA+GGG 0.615823 2_3:+39094337 None:intergenic
GCAGTTAAGAAGAAGGGCAA+AGG 0.617155 2_3:-39091051 Msa0290970:intron
AACTTCGTGCCGATAACATG+AGG 0.617798 2_3:-39095043 Msa0290970:CDS
CACACCCTGATGACAAGCAA+AGG 0.619885 2_3:-39095286 Msa0290970:CDS
CAGTGGGATATCCTTTCCAA+TGG 0.619986 2_3:-39091955 Msa0290970:CDS
GGAAGTATAGCAAATCCAGA+TGG 0.620130 2_3:+39091391 None:intergenic
AGGTTCCATACTCAATGAAG+AGG 0.621981 2_3:-39094133 Msa0290970:CDS
TATGGAGGAACTCATTGGAA+TGG 0.622262 2_3:-39094196 Msa0290970:CDS
TGATGGAACTTGGGCAGTAG+TGG 0.623796 2_3:-39093508 Msa0290970:CDS
AGAGAGATAGAAGCTAGAAG+AGG 0.624084 2_3:+39096974 None:intergenic
GATTTGCTATACTTCCAGAT+GGG 0.631821 2_3:-39091384 Msa0290970:CDS
TAACGTTTCTTCTTAGCACG+AGG 0.632532 2_3:+39095513 None:intergenic
GGAAGTGCTATCAACTGGGG+TGG 0.632566 2_3:-39093779 Msa0290970:CDS
GGAGGACAACCAGGAATGGG+AGG 0.639321 2_3:-39094309 Msa0290970:CDS
TCAAGTGTAGGCAACCAAAG+TGG 0.640121 2_3:+39094159 None:intergenic
CTACAATGGTGCATTACAAG+TGG 0.640429 2_3:-39093749 Msa0290970:intron
GTACCGCCAACATCGACTGT+GGG 0.642719 2_3:+39093111 None:intergenic
ACAACCACACCAAATGGAGG+AGG 0.644018 2_3:-39091361 Msa0290970:CDS
GTGCCTCAACAGCACACACG+TGG 0.644853 2_3:-39092874 Msa0290970:CDS
TCTGAGAAGGAAATCTTGCA+AGG 0.646214 2_3:+39090947 None:intergenic
GACAATAGAAGGAACATGAG+AGG 0.647575 2_3:+39090650 None:intergenic
ATGAATGTGGTTCTAAATGG+AGG 0.647763 2_3:-39091439 Msa0290970:CDS
GGGGTGGCAGGGAACTACAA+TGG 0.649866 2_3:-39093763 Msa0290970:CDS
ACGGATGGAGAGGAAAATTG+TGG 0.650847 2_3:+39097276 None:intergenic
TGGTTGCCTACACTTGAAGG+AGG 0.652894 2_3:-39094153 Msa0290970:CDS
GGAAGAAACAACAATAACGT+TGG 0.654744 2_3:-39096292 Msa0290970:five_prime_UTR
AGATGAAAACTCAAGAAGTG+AGG 0.655242 2_3:-39092702 Msa0290970:intron
CATGTTGAAGTGGATGATAG+AGG 0.665308 2_3:-39093252 Msa0290970:CDS
GGGACAACCACACCAAATGG+AGG 0.673800 2_3:-39091364 Msa0290970:CDS
CATCCATGAGAATCTCAACA+AGG 0.674971 2_3:+39094010 None:intergenic
ACGACCAACTGAGGACTGAG+AGG 0.677160 2_3:-39090924 Msa0290970:three_prime_UTR
CGTAAGAGTGTAGATGACCC+AGG 0.679064 2_3:-39092806 Msa0290970:CDS
GCCATTGCTGCCAAGTACGT+AGG 0.683580 2_3:-39094411 Msa0290970:CDS
CCGAGTTCTAGAGGGCGAGG+AGG 0.684847 2_3:+39094345 None:intergenic
GTTGGTGAAACTGGACATGG+TGG 0.688482 2_3:-39091337 Msa0290970:CDS
TGAAAGACTTGCTAGTGCCA+TGG 0.696212 2_3:-39093145 Msa0290970:CDS
TTGCACTACCATGCAAACAG+TGG 0.696826 2_3:-39090607 Msa0290970:three_prime_UTR
CAAGTACGTAGGAAAGCCAG+TGG 0.711066 2_3:-39094400 Msa0290970:CDS
GGTGTTGGTGAAACTGGACA+TGG 0.714667 2_3:-39091340 Msa0290970:CDS
AGACATAGTTGCAATGAATG+TGG 0.720864 2_3:-39091452 Msa0290970:CDS
GACAATGCCAGAGAAAACTG+TGG 0.735059 2_3:+39093819 None:intergenic
ACTGGAAGTGCTATCAACTG+GGG 0.765115 2_3:-39093782 Msa0290970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAACTAAATAATATT+GGG + chr2_3:39091209-39091228 None:intergenic 10.0%
!! AAACAAAAACTAAATAATAT+TGG + chr2_3:39091210-39091229 None:intergenic 10.0%
!!! AATTTTTGATAAAAATGTTA+TGG + chr2_3:39091589-39091608 None:intergenic 10.0%
!!! ATGTTAATTTAATTTGATAA+AGG - chr2_3:39091648-39091667 Msa0290970:intron 10.0%
!!! TGTTAATTTAATTTGATAAA+GGG - chr2_3:39091649-39091668 Msa0290970:intron 10.0%
!!! TTTTGTTAAATTAATTTATG+TGG - chr2_3:39092459-39092478 Msa0290970:intron 10.0%
!!! GGATTTTTTTATTTTATTTT+TGG - chr2_3:39092637-39092656 Msa0290970:intron 10.0%
!! CAATGATATAAAAATAAAAA+TGG - chr2_3:39095674-39095693 Msa0290970:CDS 10.0%
!!! TTTTACAAAAACAATGATAT+TGG + chr2_3:39090928-39090947 None:intergenic 15.0%
!!! TTGTTTTTGTAAAACTAAAT+CGG - chr2_3:39090934-39090953 Msa0290970:three_prime_UTR 15.0%
!! AATGATAAAGAAAAAAAATC+TGG - chr2_3:39091172-39091191 Msa0290970:exon 15.0%
!! ACAAAAACTAAATAATATTG+GGG + chr2_3:39091208-39091227 None:intergenic 15.0%
!! AGAGAAAAAAAATTAAAAGA+AGG - chr2_3:39091403-39091422 Msa0290970:CDS 15.0%
!!! TTTTTTTATAAGTCAACATT+TGG - chr2_3:39091706-39091725 Msa0290970:intron 15.0%
!!! TTTAACTGTTTTTTCTTTTT+TGG - chr2_3:39092434-39092453 Msa0290970:intron 15.0%
!!! GGTATTTGATTTTATTAATT+TGG - chr2_3:39092613-39092632 Msa0290970:intron 15.0%
!!! ATTTGATTTTATTAATTTGG+AGG - chr2_3:39092616-39092635 Msa0290970:intron 15.0%
!!! ATTTTAACCTTCTTTAATTT+TGG - chr2_3:39093337-39093356 Msa0290970:intron 15.0%
!!! TTATCTAATCTTAAAGTTTT+AGG - chr2_3:39095171-39095190 Msa0290970:intron 15.0%
!! AATTTGTAAGAAAAACTATA+AGG + chr2_3:39095597-39095616 None:intergenic 15.0%
!!! TATAGTTTTTCTTACAAATT+AGG - chr2_3:39095597-39095616 Msa0290970:CDS 15.0%
!!! ATAGTTTTTCTTACAAATTA+GGG - chr2_3:39095598-39095617 Msa0290970:CDS 15.0%
!!! TTTTTATATCATTGTGTAAT+TGG + chr2_3:39095668-39095687 None:intergenic 15.0%
!! AATGAATATTTGATCAAAAT+TGG + chr2_3:39096133-39096152 None:intergenic 15.0%
!!! TTCAATTTAGATTTTTCATA+GGG + chr2_3:39096184-39096203 None:intergenic 15.0%
!!! TTTCAATTTAGATTTTTCAT+AGG + chr2_3:39096185-39096204 None:intergenic 15.0%
!!! TTATTTATATTTAAAACGGA+AGG + chr2_3:39096947-39096966 None:intergenic 15.0%
!! AATAAAAAGTCAAATGTATT+TGG - chr2_3:39096962-39096981 Msa0290970:five_prime_UTR 15.0%
!! AAGATGAATATGAAAAAAGA+AGG + chr2_3:39090742-39090761 None:intergenic 20.0%
!!! TAGTTTTTGTTTATAAAGTG+AGG - chr2_3:39091218-39091237 Msa0290970:CDS 20.0%
!!! TTTTTCTCTCATGTTATTTA+CGG - chr2_3:39091265-39091284 Msa0290970:CDS 20.0%
!!! AAAGGTTTTTTTGTTTGTTT+AGG + chr2_3:39091750-39091769 None:intergenic 20.0%
!! TAAATAGTGAAAAAGTGAAA+AGG + chr2_3:39091827-39091846 None:intergenic 20.0%
!!! TTGTTTGTTTAGGTTTTTTA+AGG - chr2_3:39092484-39092503 Msa0290970:intron 20.0%
!! ATTAACACCAAAATTAAAGA+AGG + chr2_3:39093347-39093366 None:intergenic 20.0%
!!! TTTTAAAAAAAATTTCCCCT+AGG - chr2_3:39094510-39094529 Msa0290970:intron 20.0%
!!! AGAAATTCAAAAACTCTTTT+TGG + chr2_3:39095074-39095093 None:intergenic 20.0%
!!! CTTTAAGATTAGATAATGAT+TGG + chr2_3:39095167-39095186 None:intergenic 20.0%
!! ATTATAGAGTCTTCATTAAA+AGG + chr2_3:39095429-39095448 None:intergenic 20.0%
!! GATGACATAAGATAAAAAAA+GGG + chr2_3:39095474-39095493 None:intergenic 20.0%
!! AGATGACATAAGATAAAAAA+AGG + chr2_3:39095475-39095494 None:intergenic 20.0%
!!! ATGTACTGATTTTTTTACTA+GGG + chr2_3:39095545-39095564 None:intergenic 20.0%
!!! AATGTACTGATTTTTTTACT+AGG + chr2_3:39095546-39095565 None:intergenic 20.0%
!!! TTGTGTAATTGGATATTTTA+TGG + chr2_3:39095657-39095676 None:intergenic 20.0%
!! ATGGTATAAAAATAACCAAA+AGG - chr2_3:39095693-39095712 Msa0290970:CDS 20.0%
!!! CAAAAATTTGTTCAAGAATT+TGG + chr2_3:39095722-39095741 None:intergenic 20.0%
!! AATATTTGATCAAAATTGGA+TGG + chr2_3:39096129-39096148 None:intergenic 20.0%
!! AATCTAAATTGAAAATGTCT+TGG - chr2_3:39096191-39096210 Msa0290970:intron 20.0%
!!! ATTTCAAATATTGGTTGATT+CGG - chr2_3:39096506-39096525 Msa0290970:intron 20.0%
!! TTAGGGTTATATAAAAAAGA+CGG - chr2_3:39096811-39096830 Msa0290970:intron 20.0%
!!! ACTAAATACATATGACTTTT+TGG - chr2_3:39096996-39097015 Msa0290970:five_prime_UTR 20.0%
!! TATAGATATATTGTCTTAGA+AGG + chr2_3:39097074-39097093 None:intergenic 20.0%
! AGAAAAAGAAATAGAGTGAA+CGG + chr2_3:39090545-39090564 None:intergenic 25.0%
! AAGGTAGTAGATTGTTTAAA+GGG + chr2_3:39090624-39090643 None:intergenic 25.0%
! AAAGGTAGTAGATTGTTTAA+AGG + chr2_3:39090625-39090644 None:intergenic 25.0%
! TGAATATGAAAAAAGAAGGA+AGG + chr2_3:39090738-39090757 None:intergenic 25.0%
! GAAAAAATGTAGATCTACTA+TGG + chr2_3:39090803-39090822 None:intergenic 25.0%
! CAGAAAGAAAGAAAAAAAGA+TGG + chr2_3:39091055-39091074 None:intergenic 25.0%
!!! ATTAATGTGTCACTTCAAAA+AGG + chr2_3:39091299-39091318 None:intergenic 25.0%
!! TCTTTTGTTAGATCCTTAAA+TGG + chr2_3:39091382-39091401 None:intergenic 25.0%
!!! ATTTTGACTTTATCTTTGCA+AGG - chr2_3:39091678-39091697 Msa0290970:intron 25.0%
!!! TTTTGACTTTATCTTTGCAA+GGG - chr2_3:39091679-39091698 Msa0290970:intron 25.0%
! GATTGAAAACAATAAGCATT+TGG - chr2_3:39092053-39092072 Msa0290970:intron 25.0%
!!! TTATGTGGTTTTGTTTGTTT+AGG - chr2_3:39092474-39092493 Msa0290970:intron 25.0%
!!! TTTTTGGTTGAAAAATGAAG+AGG - chr2_3:39092653-39092672 Msa0290970:intron 25.0%
! ATCGAAGCCTATATATTTAT+GGG - chr2_3:39093060-39093079 Msa0290970:intron 25.0%
! TATGAGATTGAAATGAACAA+TGG - chr2_3:39093096-39093115 Msa0290970:intron 25.0%
!! GATTGATGCGATATTAATTT+TGG + chr2_3:39093139-39093158 None:intergenic 25.0%
! GATAGAGATAGAATAACAAT+AGG + chr2_3:39093286-39093305 None:intergenic 25.0%
!! GTGTTAATTTTCAGATTGAT+AGG - chr2_3:39093359-39093378 Msa0290970:intron 25.0%
! TTAATTCAAGAAATGCCAAA+TGG - chr2_3:39094379-39094398 Msa0290970:CDS 25.0%
!!! CTTGATTATTTTTCTCTATG+TGG - chr2_3:39094470-39094489 Msa0290970:intron 25.0%
!!! AAAGAGTAGTGTTTTTGTAT+TGG + chr2_3:39094713-39094732 None:intergenic 25.0%
!!! TTTTTTCTTCTTCCTTTTGA+TGG - chr2_3:39094788-39094807 Msa0290970:intron 25.0%
! TCATGAAAAATTCCATCAAA+AGG + chr2_3:39094803-39094822 None:intergenic 25.0%
!! AATTCAAAAACTCTTTTTGG+TGG + chr2_3:39095071-39095090 None:intergenic 25.0%
! AAGCAATTGATATAAGATGA+TGG + chr2_3:39095349-39095368 None:intergenic 25.0%
! TATAACGGTTTGATCAAAAT+TGG - chr2_3:39096048-39096067 Msa0290970:intron 25.0%
! GTTGCATTTACTATTATCTA+AGG + chr2_3:39096923-39096942 None:intergenic 25.0%
! AACCTTAAAGAAGGATAAAA+CGG + chr2_3:39097238-39097257 None:intergenic 25.0%
! ACATTTCAAAACCTTAAAGA+AGG + chr2_3:39097247-39097266 None:intergenic 25.0%
AGAAGAAAAGAAGATGAAGA+AGG + chr2_3:39090594-39090613 None:intergenic 30.0%
!!! AGGTTTTTTTGAGGAAGTTA+TGG + chr2_3:39090718-39090737 None:intergenic 30.0%
!!! AAAGAAGGAAGGTTTTTTTG+AGG + chr2_3:39090727-39090746 None:intergenic 30.0%
AGTAACATGCATTCAATGAT+CGG - chr2_3:39091486-39091505 Msa0290970:CDS 30.0%
AAAAAGAAGAAGATTCACCT+GGG + chr2_3:39091565-39091584 None:intergenic 30.0%
AAAAAAGAAGAAGATTCACC+TGG + chr2_3:39091566-39091585 None:intergenic 30.0%
GACTGGTAAAATACAAAGAA+AGG + chr2_3:39091768-39091787 None:intergenic 30.0%
AAAAGTGAAAAGGAATAACG+CGG + chr2_3:39091817-39091836 None:intergenic 30.0%
!! GTTGATGTTTTTGAGGAAAA+TGG + chr2_3:39091852-39091871 None:intergenic 30.0%
AAAACATGTGAATTTGACCA+AGG + chr2_3:39091874-39091893 None:intergenic 30.0%
!! TTGTTTTGTGTCATGTCAAA+TGG + chr2_3:39092148-39092167 None:intergenic 30.0%
TGTCGAATAATTCATCTTCA+CGG + chr2_3:39092204-39092223 None:intergenic 30.0%
AACCAAAACTTCACTTGTAA+TGG + chr2_3:39092569-39092588 None:intergenic 30.0%
TTCTCTAAACCTCATGTTAT+CGG + chr2_3:39092768-39092787 None:intergenic 30.0%
CAGAAATTACACCAAGTTTA+TGG - chr2_3:39092918-39092937 Msa0290970:CDS 30.0%
!!! ATGTATGTTTTAACTGCGTT+TGG + chr2_3:39092985-39093004 None:intergenic 30.0%
TAAAACATACATCAAGGTCT+TGG - chr2_3:39092993-39093012 Msa0290970:intron 30.0%
GATCGAAGCCTATATATTTA+TGG - chr2_3:39093059-39093078 Msa0290970:intron 30.0%
TCAAACGCCCATAAATATAT+AGG + chr2_3:39093070-39093089 None:intergenic 30.0%
GATCTTCTTAGATCAATAAG+TGG - chr2_3:39093532-39093551 Msa0290970:CDS 30.0%
ATATTCCTCTTCATTGAGTA+TGG + chr2_3:39093674-39093693 None:intergenic 30.0%
TCAATGAAGAGGAATATGTT+AGG - chr2_3:39093677-39093696 Msa0290970:intron 30.0%
!!! TGACACTATTTTTGTTCTTG+TGG - chr2_3:39093939-39093958 Msa0290970:intron 30.0%
TTGTGGTTTATAAGAACCAA+TGG - chr2_3:39093956-39093975 Msa0290970:intron 30.0%
ACAAAATAACTCTCTCTAGT+TGG + chr2_3:39094250-39094269 None:intergenic 30.0%
! TCTCTATGTGGATTAACTAT+AGG - chr2_3:39094482-39094501 Msa0290970:intron 30.0%
AAAATTTCCCCTAGGTTATA+TGG - chr2_3:39094518-39094537 Msa0290970:intron 30.0%
AAATTTCCCCTAGGTTATAT+GGG - chr2_3:39094519-39094538 Msa0290970:intron 30.0%
TTAGTGATAACAAACCAAGA+TGG - chr2_3:39094843-39094862 Msa0290970:intron 30.0%
TAGTGATAACAAACCAAGAT+GGG - chr2_3:39094844-39094863 Msa0290970:intron 30.0%
TTGCATTACTGTGTTATCAT+AGG - chr2_3:39095194-39095213 Msa0290970:intron 30.0%
ATAGAGTCTTCATTAAAAGG+AGG + chr2_3:39095426-39095445 None:intergenic 30.0%
TTCGGCTCAAATATCTATAA+CGG - chr2_3:39096033-39096052 Msa0290970:intron 30.0%
! TGGACTTTTCAATTCAAACT+CGG - chr2_3:39096068-39096087 Msa0290970:intron 30.0%
GAATTATGCATTCACACATT+TGG + chr2_3:39096162-39096181 None:intergenic 30.0%
! GTAATATCAACATGTTGCTT+TGG + chr2_3:39096278-39096297 None:intergenic 30.0%
GATATTACAAGAGAGTTGTA+CGG - chr2_3:39096290-39096309 Msa0290970:five_prime_UTR 30.0%
GACTGTTGCATTTCAAATAT+TGG - chr2_3:39096497-39096516 Msa0290970:intron 30.0%
CATCAAGTCATCTAATGTAA+CGG - chr2_3:39096634-39096653 Msa0290970:intron 30.0%
GGCTTATATTCAAGACTATA+TGG - chr2_3:39097017-39097036 Msa0290970:five_prime_UTR 30.0%
AAAGCACAAATGACAATAGA+AGG + chr2_3:39097163-39097182 None:intergenic 30.0%
! ATCCGTTTTATCCTTCTTTA+AGG - chr2_3:39097233-39097252 Msa0290970:five_prime_UTR 30.0%
CTGAAATTGAGTAGACAAAA+TGG + chr2_3:39097280-39097299 None:intergenic 30.0%
AAAGAAATAGAGTGAACGGA+TGG + chr2_3:39090541-39090560 None:intergenic 35.0%
! GAAAGCTTGATGAGTGTTTT+TGG + chr2_3:39090663-39090682 None:intergenic 35.0%
GTTATGGAAAGTTGGGTATA+TGG + chr2_3:39090702-39090721 None:intergenic 35.0%
TGAGGAAGTTATGGAAAGTT+GGG + chr2_3:39090709-39090728 None:intergenic 35.0%
TTGAGGAAGTTATGGAAAGT+TGG + chr2_3:39090710-39090729 None:intergenic 35.0%
!!! TTTTTTTCCCACTTACCAAG+AGG + chr2_3:39090866-39090885 None:intergenic 35.0%
TTCTAGCAACCCTAACTATA+TGG + chr2_3:39091000-39091019 None:intergenic 35.0%
CATCATCTGAAAGCCATTTA+AGG - chr2_3:39091366-39091385 Msa0290970:CDS 35.0%
TGATTGTGAAATATGCAAGC+TGG - chr2_3:39091447-39091466 Msa0290970:CDS 35.0%
ATTGAATGCATGTTACTAGC+TGG + chr2_3:39091483-39091502 None:intergenic 35.0%
GGAAGAAACAACAATAACGT+TGG - chr2_3:39091507-39091526 Msa0290970:CDS 35.0%
! AACAATAACGTTGGTGTCTT+TGG - chr2_3:39091516-39091535 Msa0290970:CDS 35.0%
CAAGTATCCTTCTCGTTATT+CGG - chr2_3:39091788-39091807 Msa0290970:intron 35.0%
TTCCTCAAAAACATCAACCT+TGG - chr2_3:39091854-39091873 Msa0290970:intron 35.0%
AATGTTCCAGCCAAATCTAA+TGG - chr2_3:39092096-39092115 Msa0290970:intron 35.0%
AATTCATCTTCACGGATTCT+TGG + chr2_3:39092196-39092215 None:intergenic 35.0%
AATCAAGAAGCTGCTAATTC+TGG - chr2_3:39092250-39092269 Msa0290970:intron 35.0%
! AGCCATTACAAGTGAAGTTT+TGG - chr2_3:39092564-39092583 Msa0290970:intron 35.0%
GAACAAACGTACTCAAATGA+AGG - chr2_3:39092592-39092611 Msa0290970:intron 35.0%
AATGCTTCTTGTCCTAATTG+TGG - chr2_3:39092797-39092816 Msa0290970:CDS 35.0%
GAATGTATACCTCTTCTCTA+AGG + chr2_3:39092886-39092905 None:intergenic 35.0%
TATCAATCGCACCATAAACT+TGG + chr2_3:39092932-39092951 None:intergenic 35.0%
CGCAGTTAAAACATACATCA+AGG - chr2_3:39092987-39093006 Msa0290970:intron 35.0%
!! TGCGATATTAATTTTGGTCG+AGG + chr2_3:39093133-39093152 None:intergenic 35.0%
! ATTGGTTTATCAGCTTCAGT+AGG + chr2_3:39093559-39093578 None:intergenic 35.0%
ACTGCTAGCTCAATTATCAT+TGG + chr2_3:39093577-39093596 None:intergenic 35.0%
! TATGTTAGGTCTTTTCCTAG+AGG - chr2_3:39093691-39093710 Msa0290970:intron 35.0%
TAACCTTGTTGAGATTCTCA+TGG - chr2_3:39093786-39093805 Msa0290970:CDS 35.0%
!! CTAGAGAGAGTTATTTTGTG+AGG - chr2_3:39094251-39094270 Msa0290970:CDS 35.0%
TATTGTAAGCAACATGCTGA+TGG - chr2_3:39094274-39094293 Msa0290970:CDS 35.0%
TCTTGAATTAAGCAACCAGA+AGG + chr2_3:39094370-39094389 None:intergenic 35.0%
ATAACCTTTGAGTAGCCATT+TGG + chr2_3:39094397-39094416 None:intergenic 35.0%
TCTTTCACATTGTCGATCTA+GGG + chr2_3:39094641-39094660 None:intergenic 35.0%
! AACACTACTCTTTCTCGTTT+TGG - chr2_3:39094720-39094739 Msa0290970:intron 35.0%
!! TAAGTGCTGCAACTTCTTTT+TGG - chr2_3:39095036-39095055 Msa0290970:CDS 35.0%
AGATGAAAACTCAAGAAGTG+AGG - chr2_3:39095097-39095116 Msa0290970:intron 35.0%
TCTTCATTAAAAGGAGGAGT+CGG + chr2_3:39095420-39095439 None:intergenic 35.0%
!! TCAAGAATTTGGTAGCCTTT+TGG + chr2_3:39095711-39095730 None:intergenic 35.0%
! TTTTCAACTCTCGAAAACAG+TGG - chr2_3:39095827-39095846 Msa0290970:intron 35.0%
TTTCAACTCTCGAAAACAGT+GGG - chr2_3:39095828-39095847 Msa0290970:intron 35.0%
!! TAGCAATATGTGCCATTTCT+TGG + chr2_3:39095879-39095898 None:intergenic 35.0%
GAAATGGCACATATTGCTAA+TGG - chr2_3:39095880-39095899 Msa0290970:intron 35.0%
ATTGCTAATGGAAGAGATAC+TGG - chr2_3:39095892-39095911 Msa0290970:intron 35.0%
TGCAAATTCCCACATTCATT+CGG - chr2_3:39096015-39096034 Msa0290970:intron 35.0%
TATTTGAGCCGAATGAATGT+GGG + chr2_3:39096026-39096045 None:intergenic 35.0%
ATATTTGAGCCGAATGAATG+TGG + chr2_3:39096027-39096046 None:intergenic 35.0%
TTCATTGCAACTATGTCTAC+AGG + chr2_3:39096345-39096364 None:intergenic 35.0%
AGACATAGTTGCAATGAATG+TGG - chr2_3:39096347-39096366 Msa0290970:five_prime_UTR 35.0%
!! GCAATGAATGTGGTTCTAAA+TGG - chr2_3:39096357-39096376 Msa0290970:five_prime_UTR 35.0%
!! ATGAATGTGGTTCTAAATGG+AGG - chr2_3:39096360-39096379 Msa0290970:five_prime_UTR 35.0%
!! TGAATGTGGTTCTAAATGGA+GGG - chr2_3:39096361-39096380 Msa0290970:five_prime_UTR 35.0%
!! GATTTGCTATACTTCCAGAT+GGG - chr2_3:39096415-39096434 Msa0290970:five_prime_UTR 35.0%
TTATTGCTTGTACTGTTGAG+AGG - chr2_3:39096577-39096596 Msa0290970:intron 35.0%
TTGTACTGTTGAGAGGATTA+AGG - chr2_3:39096584-39096603 Msa0290970:intron 35.0%
CGTTACATTAGATGACTTGA+TGG + chr2_3:39096636-39096655 None:intergenic 35.0%
TCTTGTGCAGTTAAGAAGAA+GGG - chr2_3:39096742-39096761 Msa0290970:intron 35.0%
!!! AAGGGAAAAGCATTGCATTT+TGG - chr2_3:39096767-39096786 Msa0290970:intron 35.0%
GAAATTAACCACTGTTTGCA+TGG + chr2_3:39097203-39097222 None:intergenic 35.0%
TGAGAGGACAAAGGAATTGA+AGG + chr2_3:39090571-39090590 None:intergenic 40.0%
AAGAAGATGAAGAAGGTGAG+AGG + chr2_3:39090587-39090606 None:intergenic 40.0%
! TGGACGGTCTAGCTTAAAAA+AGG + chr2_3:39090643-39090662 None:intergenic 40.0%
!!! GCTTGATGAGTGTTTTTGGA+CGG + chr2_3:39090659-39090678 None:intergenic 40.0%
AGAGAGATAGAAGCTAGAAG+AGG + chr2_3:39090828-39090847 None:intergenic 40.0%
TGTCTCCGTCCATATAGTTA+GGG - chr2_3:39090988-39091007 Msa0290970:three_prime_UTR 40.0%
AGCAACCCTAACTATATGGA+CGG + chr2_3:39090996-39091015 None:intergenic 40.0%
! GATTCTTCTGTCAGCTTTAG+CGG + chr2_3:39091334-39091353 None:intergenic 40.0%
CGAATAACGAGAAGGATACT+TGG + chr2_3:39091790-39091809 None:intergenic 40.0%
!!! GACCAAGGTTGATGTTTTTG+AGG + chr2_3:39091859-39091878 None:intergenic 40.0%
TGTCCAGCTTCCATTAGATT+TGG + chr2_3:39092109-39092128 None:intergenic 40.0%
TTCGACAGTGCTACAAAATC+TGG - chr2_3:39092217-39092236 Msa0290970:intron 40.0%
TAACGTTTCTTCTTAGCACG+AGG + chr2_3:39092289-39092308 None:intergenic 40.0%
ACAGCATCAGATCCAAGAAA+TGG - chr2_3:39092321-39092340 Msa0290970:intron 40.0%
CTTCTTACGCTTCCATTTCT+TGG + chr2_3:39092336-39092355 None:intergenic 40.0%
! TTTTGCTTTGCAGACTCAAC+AGG - chr2_3:39092694-39092713 Msa0290970:intron 40.0%
ATCAAACGACATTTCTCCGA+TGG + chr2_3:39092834-39092853 None:intergenic 40.0%
CGTTTGATGAACATCACTTG+AGG - chr2_3:39092846-39092865 Msa0290970:CDS 40.0%
! TGTATACCTCTTCTCTAAGG+CGG + chr2_3:39092883-39092902 None:intergenic 40.0%
TATGGAGGAACTCATTGGAA+TGG - chr2_3:39093603-39093622 Msa0290970:intron 40.0%
ACTCATTGGAATGGCACAAA+TGG - chr2_3:39093612-39093631 Msa0290970:intron 40.0%
CTCATTGGAATGGCACAAAT+GGG - chr2_3:39093613-39093632 Msa0290970:intron 40.0%
AGGTTCCATACTCAATGAAG+AGG - chr2_3:39093666-39093685 Msa0290970:intron 40.0%
! AGGTCTTTTCCTAGAGGAAT+TGG - chr2_3:39093697-39093716 Msa0290970:intron 40.0%
!! CACTTAAAACCAGCTGGTTT+TGG + chr2_3:39093724-39093743 None:intergenic 40.0%
CATCCATGAGAATCTCAACA+AGG + chr2_3:39093792-39093811 None:intergenic 40.0%
TGTTGAGATTCTCATGGATG+TGG - chr2_3:39093792-39093811 Msa0290970:CDS 40.0%
CTACAATGGTGCATTACAAG+TGG - chr2_3:39094050-39094069 Msa0290970:CDS 40.0%
AATGCCAAATGGCTACTCAA+AGG - chr2_3:39094390-39094409 Msa0290970:CDS 40.0%
TGCTCAACCCATATAACCTA+GGG + chr2_3:39094529-39094548 None:intergenic 40.0%
ATGCTCAACCCATATAACCT+AGG + chr2_3:39094530-39094549 None:intergenic 40.0%
CATGTTGAAGTGGATGATAG+AGG - chr2_3:39094547-39094566 Msa0290970:intron 40.0%
!! TACAAGCAGCTTGTTAGTTC+TGG - chr2_3:39094583-39094602 Msa0290970:intron 40.0%
!! GTTAGTTCTGGACATGCATT+TGG - chr2_3:39094595-39094614 Msa0290970:intron 40.0%
!! ATGCATTTGGTGCAAAACGT+TGG - chr2_3:39094608-39094627 Msa0290970:intron 40.0%
GTCTTTCACATTGTCGATCT+AGG + chr2_3:39094642-39094661 None:intergenic 40.0%
ACATACTCTTTCTCCCATCT+TGG + chr2_3:39094860-39094879 None:intergenic 40.0%
!! AAAACTCTTTTTGGTGGCAC+TGG + chr2_3:39095065-39095084 None:intergenic 40.0%
!! GAATGTGGTTCTAAATGGAG+GGG - chr2_3:39096362-39096381 Msa0290970:five_prime_UTR 40.0%
!! GGAAGAAGTGCTACATAATC+TGG + chr2_3:39096390-39096409 None:intergenic 40.0%
TATGTAGCACTTCTTCCATC+TGG - chr2_3:39096393-39096412 Msa0290970:five_prime_UTR 40.0%
! GGAAGTATAGCAAATCCAGA+TGG + chr2_3:39096411-39096430 None:intergenic 40.0%
!! GGATTTGCTATACTTCCAGA+TGG - chr2_3:39096414-39096433 Msa0290970:five_prime_UTR 40.0%
!! ATTGGTTGATTCGGTTCCAA+CGG - chr2_3:39096515-39096534 Msa0290970:intron 40.0%
GGCAAAACTTTCTCTTGGTT+CGG - chr2_3:39096536-39096555 Msa0290970:intron 40.0%
AGGATTAAGGCTTCTTTGTC+TGG - chr2_3:39096597-39096616 Msa0290970:intron 40.0%
CTCTTGTGCAGTTAAGAAGA+AGG - chr2_3:39096741-39096760 Msa0290970:intron 40.0%
CAGTTAAGAAGAAGGGCAAA+GGG - chr2_3:39096749-39096768 Msa0290970:intron 40.0%
! GCATTGCATTTTGGATGATG+AGG - chr2_3:39096776-39096795 Msa0290970:intron 40.0%
! TTGCATTTTGGATGATGAGG+AGG - chr2_3:39096779-39096798 Msa0290970:intron 40.0%
TCTGAGAAGGAAATCTTGCA+AGG + chr2_3:39096855-39096874 None:intergenic 40.0%
GACAATAGAAGGAACATGAG+AGG + chr2_3:39097152-39097171 None:intergenic 40.0%
ACGGATGGAGAGGAAAATTG+TGG + chr2_3:39090526-39090545 None:intergenic 45.0%
AATAGAGTGAACGGATGGAG+AGG + chr2_3:39090536-39090555 None:intergenic 45.0%
TGAAGAAGGTGAGAGGACAA+AGG + chr2_3:39090580-39090599 None:intergenic 45.0%
ATAGCAACTACCCTTCCTCT+TGG - chr2_3:39090848-39090867 Msa0290970:three_prime_UTR 45.0%
TACCCTTCCTCTTGGTAAGT+GGG - chr2_3:39090856-39090875 Msa0290970:three_prime_UTR 45.0%
TTCCCACTTACCAAGAGGAA+GGG + chr2_3:39090861-39090880 None:intergenic 45.0%
TTTCCCACTTACCAAGAGGA+AGG + chr2_3:39090862-39090881 None:intergenic 45.0%
CTGTCTCCGTCCATATAGTT+AGG - chr2_3:39090987-39091006 Msa0290970:three_prime_UTR 45.0%
TTCATCTCTCTCTCTATCCC+AGG - chr2_3:39091545-39091564 Msa0290970:intron 45.0%
AACGAGAAGGATACTTGGAC+TGG + chr2_3:39091785-39091804 None:intergenic 45.0%
CAGCTTCCATTAGATTTGGC+TGG + chr2_3:39092105-39092124 None:intergenic 45.0%
CAGCCAAATCTAATGGAAGC+TGG - chr2_3:39092103-39092122 Msa0290970:intron 45.0%
GGATCTGATGCTGTGTATGA+CGG + chr2_3:39092315-39092334 None:intergenic 45.0%
CCTTCCTTTGCTTGTCATCA+GGG + chr2_3:39092520-39092539 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+AGG + chr2_3:39092521-39092540 None:intergenic 45.0%
AAGGAACTGAGCAGAGAGTT+AGG - chr2_3:39092536-39092555 Msa0290970:intron 45.0%
AGGAACTGAGCAGAGAGTTA+GGG - chr2_3:39092537-39092556 Msa0290970:intron 45.0%
! AACTTCGTGCCGATAACATG+AGG - chr2_3:39092756-39092775 Msa0290970:CDS 45.0%
GCTTCTTGTCCTAATTGTGG+TGG - chr2_3:39092800-39092819 Msa0290970:CDS 45.0%
AAATTCCCGCCTTAGAGAAG+AGG - chr2_3:39092874-39092893 Msa0290970:CDS 45.0%
!! GTATACCTCTTCTCTAAGGC+GGG + chr2_3:39092882-39092901 None:intergenic 45.0%
TACATATCTCCTCCCATTCC+TGG + chr2_3:39093502-39093521 None:intergenic 45.0%
GGAATGGGAGGAGATATGTA+TGG - chr2_3:39093502-39093521 Msa0290970:CDS 45.0%
CACAAATGGGTGATCCACTT+TGG - chr2_3:39093626-39093645 Msa0290970:intron 45.0%
TCAAGTGTAGGCAACCAAAG+TGG + chr2_3:39093643-39093662 None:intergenic 45.0%
CTTTGGTTGCCTACACTTGA+AGG - chr2_3:39093643-39093662 Msa0290970:intron 45.0%
ATGGAACCTCCTTCAAGTGT+AGG + chr2_3:39093655-39093674 None:intergenic 45.0%
!!! GGTTTTGGACCAATTCCTCT+AGG + chr2_3:39093709-39093728 None:intergenic 45.0%
GCTTCACACTTAAAACCAGC+TGG + chr2_3:39093730-39093749 None:intergenic 45.0%
CAGAGAAAACTGTGGACCAT+TGG + chr2_3:39093975-39093994 None:intergenic 45.0%
! CAATGGTCCACAGTTTTCTC+TGG - chr2_3:39093973-39093992 Msa0290970:intron 45.0%
GACAATGCCAGAGAAAACTG+TGG + chr2_3:39093983-39094002 None:intergenic 45.0%
TGTCTCAAGAGCAATGACAC+TGG - chr2_3:39093999-39094018 Msa0290970:intron 45.0%
!! ACACTGGAAGTGCTATCAAC+TGG - chr2_3:39094015-39094034 Msa0290970:CDS 45.0%
!! CACTGGAAGTGCTATCAACT+GGG - chr2_3:39094016-39094035 Msa0290970:CDS 45.0%
!! ACTGGAAGTGCTATCAACTG+GGG - chr2_3:39094017-39094036 Msa0290970:CDS 45.0%
AGCAACATGCTGATGGAACT+TGG - chr2_3:39094281-39094300 Msa0290970:CDS 45.0%
GCAACATGCTGATGGAACTT+GGG - chr2_3:39094282-39094301 Msa0290970:CDS 45.0%
!! GGCAGTAGTGGATGTTTCTT+TGG - chr2_3:39094303-39094322 Msa0290970:CDS 45.0%
GCTCAACCCATATAACCTAG+GGG + chr2_3:39094528-39094547 None:intergenic 45.0%
! ATGGGTTGAGCATGTTGAAG+TGG - chr2_3:39094537-39094556 Msa0290970:intron 45.0%
!! TGAAAGACTTGCTAGTGCCA+TGG - chr2_3:39094654-39094673 Msa0290970:intron 45.0%
! TGTGGGAATGTTTGTTGCCA+TGG + chr2_3:39094674-39094693 None:intergenic 45.0%
AACATTCCCACAGTCGATGT+TGG - chr2_3:39094682-39094701 Msa0290970:intron 45.0%
ATGTGCATAAGCTTCTGTGC+TGG - chr2_3:39094897-39094916 Msa0290970:intron 45.0%
! CACAGGAGCTGATGATGTAA+GGG - chr2_3:39094962-39094981 Msa0290970:CDS 45.0%
TGGGTCATCTACACTCTTAC+GGG + chr2_3:39094994-39095013 None:intergenic 45.0%
CTGGGTCATCTACACTCTTA+CGG + chr2_3:39094995-39095014 None:intergenic 45.0%
GAAGTGAGGTAAGCAAGCTA+AGG - chr2_3:39095111-39095130 Msa0290970:intron 45.0%
CAGTGGGATATCCTTTCCAA+TGG - chr2_3:39095844-39095863 Msa0290970:intron 45.0%
TGGGATATCCTTTCCAATGG+TGG - chr2_3:39095847-39095866 Msa0290970:intron 45.0%
TTCTTGGACAACTCCACCAT+TGG + chr2_3:39095863-39095882 None:intergenic 45.0%
TGGTGGAGTTGTCCAAGAAA+TGG - chr2_3:39095864-39095883 Msa0290970:intron 45.0%
GAGAGTTGTACGGATTCAAC+AGG - chr2_3:39096300-39096319 Msa0290970:five_prime_UTR 45.0%
! CCAAGAGAAAGTTTTGCCGT+TGG + chr2_3:39096534-39096553 None:intergenic 45.0%
CCAACGGCAAAACTTTCTCT+TGG - chr2_3:39096531-39096550 Msa0290970:intron 45.0%
!! TTCTCTTGGTTCGGTTGCTA+CGG - chr2_3:39096545-39096564 Msa0290970:intron 45.0%
GCAGTTAAGAAGAAGGGCAA+AGG - chr2_3:39096748-39096767 Msa0290970:intron 45.0%
ATGAGGAGGCAAGAGAACTT+AGG - chr2_3:39096793-39096812 Msa0290970:intron 45.0%
TGAGGAGGCAAGAGAACTTA+GGG - chr2_3:39096794-39096813 Msa0290970:intron 45.0%
TAATCCTCTCAGTCCTCAGT+TGG + chr2_3:39096882-39096901 None:intergenic 45.0%
ACTGAGGACTGAGAGGATTA+AGG - chr2_3:39096882-39096901 Msa0290970:intron 45.0%
GGACTGAGAGGATTAAGGTT+CGG - chr2_3:39096887-39096906 Msa0290970:intron 45.0%
GACTGAGAGGATTAAGGTTC+GGG - chr2_3:39096888-39096907 Msa0290970:intron 45.0%
TTGCACTACCATGCAAACAG+TGG - chr2_3:39097192-39097211 Msa0290970:five_prime_UTR 45.0%
!!! TTATTTTTTTGTAAATAAAT+TGG + chr2_3:39091916-39091935 None:intergenic 5.0%
!! AAAAGTAAATAAATAAAAAA+TGG + chr2_3:39092383-39092402 None:intergenic 5.0%
!! ATTAAATATATTAGTAAATA+TGG + chr2_3:39095962-39095981 None:intergenic 5.0%
!! TTAATTAAAAAAACTAATTA+GGG + chr2_3:39096668-39096687 None:intergenic 5.0%
!! ATTAATTAAAAAAACTAATT+AGG + chr2_3:39096669-39096688 None:intergenic 5.0%
!!! CTTTTTATTTATATTTAAAA+CGG + chr2_3:39096951-39096970 None:intergenic 5.0%
CTACCCTTCCTCTTGGTAAG+TGG - chr2_3:39090855-39090874 Msa0290970:three_prime_UTR 50.0%
GCGGTTTCCGAATAACGAGA+AGG + chr2_3:39091798-39091817 None:intergenic 50.0%
CTTTGCTTGTCATCAGGGTG+TGG + chr2_3:39092515-39092534 None:intergenic 50.0%
CACACCCTGATGACAAGCAA+AGG - chr2_3:39092513-39092532 Msa0290970:intron 50.0%
CCCTGATGACAAGCAAAGGA+AGG - chr2_3:39092517-39092536 Msa0290970:intron 50.0%
CTTTGCAGACTCAACAGGAG+AGG - chr2_3:39092699-39092718 Msa0290970:intron 50.0%
GCAGTTGGTCCACCACAATT+AGG + chr2_3:39092812-39092831 None:intergenic 50.0%
GACATTTCTCCGATGGCAGT+TGG + chr2_3:39092827-39092846 None:intergenic 50.0%
GATCCCCTACAACAGTTGCA+CGG - chr2_3:39093015-39093034 Msa0290970:intron 50.0%
TGCACCGTGCAACTGTTGTA+GGG + chr2_3:39093022-39093041 None:intergenic 50.0%
GGCTTCGATCCCCTACATTA+GGG + chr2_3:39093049-39093068 None:intergenic 50.0%
AGGCTTCGATCCCCTACATT+AGG + chr2_3:39093050-39093069 None:intergenic 50.0%
TCCTACGTACTTGGCAGCAA+TGG + chr2_3:39093392-39093411 None:intergenic 50.0%
!! CACTGGCTTTCCTACGTACT+TGG + chr2_3:39093401-39093420 None:intergenic 50.0%
CAAGTACGTAGGAAAGCCAG+TGG - chr2_3:39093399-39093418 Msa0290970:intron 50.0%
!! AGTAGTGGATAGCTCACCAC+TGG + chr2_3:39093418-39093437 None:intergenic 50.0%
TCCACTACTCTCCCCTTCAT+CGG - chr2_3:39093429-39093448 Msa0290970:CDS 50.0%
!! CACCAATGCCGAGTTCTAGA+GGG + chr2_3:39093465-39093484 None:intergenic 50.0%
!! GAACTCGGCATTGGTGGTTT+CGG - chr2_3:39093469-39093488 Msa0290970:CDS 50.0%
TTTCGGAGGACAACCAGGAA+TGG - chr2_3:39093486-39093505 Msa0290970:CDS 50.0%
TTCGGAGGACAACCAGGAAT+GGG - chr2_3:39093487-39093506 Msa0290970:CDS 50.0%
GGAGGAGATATGTATGGAGC+TGG - chr2_3:39093508-39093527 Msa0290970:CDS 50.0%
TGAGCTAGCAGTTGCTGCTA+TGG - chr2_3:39093585-39093604 Msa0290970:CDS 50.0%
GCTGCTATGGAGGAACTCAT+TGG - chr2_3:39093598-39093617 Msa0290970:intron 50.0%
TGGTTGCCTACACTTGAAGG+AGG - chr2_3:39093646-39093665 Msa0290970:intron 50.0%
GGAATTGGTCCAAAACCAGC+TGG - chr2_3:39093712-39093731 Msa0290970:intron 50.0%
CTAGTTGGCACAAGTGGTGA+AGG + chr2_3:39094235-39094254 None:intergenic 50.0%
CTCTCTCTAGTTGGCACAAG+TGG + chr2_3:39094241-39094260 None:intergenic 50.0%
TGATGGAACTTGGGCAGTAG+TGG - chr2_3:39094291-39094310 Msa0290970:CDS 50.0%
TGGATCTGGCAGAAGGACTA+GGG + chr2_3:39094339-39094358 None:intergenic 50.0%
CTTCTTCTGGATCTGGCAGA+AGG + chr2_3:39094346-39094365 None:intergenic 50.0%
CTTCTGCCAGATCCAGAAGA+AGG - chr2_3:39094344-39094363 Msa0290970:CDS 50.0%
AGAAGGCCTTCTTCTGGATC+TGG + chr2_3:39094353-39094372 None:intergenic 50.0%
AGATCCAGAAGAAGGCCTTC+TGG - chr2_3:39094352-39094371 Msa0290970:CDS 50.0%
ATTCCCACAGTCGATGTTGG+CGG - chr2_3:39094685-39094704 Msa0290970:intron 50.0%
CACACGTGGACAACACTTTC+AGG - chr2_3:39094939-39094958 Msa0290970:CDS 50.0%
TGGACAACACTTTCAGGCAC+AGG - chr2_3:39094945-39094964 Msa0290970:CDS 50.0%
! GCACAGGAGCTGATGATGTA+AGG - chr2_3:39094961-39094980 Msa0290970:CDS 50.0%
! CGTAAGAGTGTAGATGACCC+AGG - chr2_3:39094993-39095012 Msa0290970:CDS 50.0%
GCACTTAGAACAATGCCAGC+TGG + chr2_3:39095023-39095042 None:intergenic 50.0%
GGACAACTCCACCATTGGAA+AGG + chr2_3:39095858-39095877 None:intergenic 50.0%
! TTTGGTGTGGTTGTCCCATC+TGG + chr2_3:39096432-39096451 None:intergenic 50.0%
GATGGGACAACCACACCAAA+TGG - chr2_3:39096432-39096451 Msa0290970:five_prime_UTR 50.0%
ACAACCACACCAAATGGAGG+AGG - chr2_3:39096438-39096457 Msa0290970:five_prime_UTR 50.0%
! AACACCTCCTCCATTTGGTG+TGG + chr2_3:39096445-39096464 None:intergenic 50.0%
! ACACCAAATGGAGGAGGTGT+TGG - chr2_3:39096444-39096463 Msa0290970:five_prime_UTR 50.0%
TCACCAACACCTCCTCCATT+TGG + chr2_3:39096450-39096469 None:intergenic 50.0%
!! GGTGTTGGTGAAACTGGACA+TGG - chr2_3:39096459-39096478 Msa0290970:five_prime_UTR 50.0%
! GTTGGTGAAACTGGACATGG+TGG - chr2_3:39096462-39096481 Msa0290970:five_prime_UTR 50.0%
!! CTCAGTTGGTCGTTCTGAGA+AGG + chr2_3:39096868-39096887 None:intergenic 50.0%
CTTCTCAGAACGACCAACTG+AGG - chr2_3:39096866-39096885 Msa0290970:intron 50.0%
!! TGTGGTGGACCAACTGCCAT+CGG - chr2_3:39092815-39092834 Msa0290970:CDS 55.0%
GCACCGTGCAACTGTTGTAG+GGG + chr2_3:39093021-39093040 None:intergenic 55.0%
CTGCACCGTGCAACTGTTGT+AGG + chr2_3:39093023-39093042 None:intergenic 55.0%
GGTGCAGCGACCCTAATGTA+GGG - chr2_3:39093036-39093055 Msa0290970:intron 55.0%
GTGCAGCGACCCTAATGTAG+GGG - chr2_3:39093037-39093056 Msa0290970:intron 55.0%
GCCATTGCTGCCAAGTACGT+AGG - chr2_3:39093388-39093407 Msa0290970:intron 55.0%
ACCGATGAAGGGGAGAGTAG+TGG + chr2_3:39093433-39093452 None:intergenic 55.0%
! CCACCAATGCCGAGTTCTAG+AGG + chr2_3:39093466-39093485 None:intergenic 55.0%
!! CCTCTAGAACTCGGCATTGG+TGG - chr2_3:39093463-39093482 Msa0290970:CDS 55.0%
GCTAGCAGTTGCTGCTATGG+AGG - chr2_3:39093588-39093607 Msa0290970:CDS 55.0%
!! GGAAGTGCTATCAACTGGGG+TGG - chr2_3:39094020-39094039 Msa0290970:CDS 55.0%
TGCTATCAACTGGGGTGGCA+GGG - chr2_3:39094025-39094044 Msa0290970:CDS 55.0%
CTGGATCTGGCAGAAGGACT+AGG + chr2_3:39094340-39094359 None:intergenic 55.0%
GCAACCAGAAGGCCTTCTTC+TGG + chr2_3:39094359-39094378 None:intergenic 55.0%
! GTACCGCCAACATCGACTGT+GGG + chr2_3:39094691-39094710 None:intergenic 55.0%
! TGTCCACGTGTGTGCTGTTG+AGG + chr2_3:39094931-39094950 None:intergenic 55.0%
!! CAATGCCAGCTGGTCTTCCT+GGG + chr2_3:39095013-39095032 None:intergenic 55.0%
!! ACAATGCCAGCTGGTCTTCC+TGG + chr2_3:39095014-39095033 None:intergenic 55.0%
GGGACAACCACACCAAATGG+AGG - chr2_3:39096435-39096454 Msa0290970:five_prime_UTR 55.0%
!! GGAGGAGGTGTTGGTGAAAC+TGG - chr2_3:39096453-39096472 Msa0290970:five_prime_UTR 55.0%
GGTGAAACTGGACATGGTGG+TGG - chr2_3:39096465-39096484 Msa0290970:five_prime_UTR 55.0%
ACGACCAACTGAGGACTGAG+AGG - chr2_3:39096875-39096894 Msa0290970:intron 55.0%
CGGTGCAGCGACCCTAATGT+AGG - chr2_3:39093035-39093054 Msa0290970:intron 60.0%
GCGAGGAGGAACCGATGAAG+GGG + chr2_3:39093443-39093462 None:intergenic 60.0%
GGCGAGGAGGAACCGATGAA+GGG + chr2_3:39093444-39093463 None:intergenic 60.0%
!! CCTCCTCGCCCTCTAGAACT+CGG - chr2_3:39093454-39093473 Msa0290970:CDS 60.0%
!! ATGCCGAGTTCTAGAGGGCG+AGG + chr2_3:39093460-39093479 None:intergenic 60.0%
!! CGCCCTCTAGAACTCGGCAT+TGG - chr2_3:39093460-39093479 Msa0290970:CDS 60.0%
!! CTCGGCATTGGTGGTTTCGG+AGG - chr2_3:39093472-39093491 Msa0290970:CDS 60.0%
GGTGGTTTCGGAGGACAACC+AGG - chr2_3:39093481-39093500 Msa0290970:CDS 60.0%
GGAGGACAACCAGGAATGGG+AGG - chr2_3:39093490-39093509 Msa0290970:CDS 60.0%
GTGCTATCAACTGGGGTGGC+AGG - chr2_3:39094024-39094043 Msa0290970:CDS 60.0%
GGGGTGGCAGGGAACTACAA+TGG - chr2_3:39094036-39094055 Msa0290970:CDS 60.0%
! GGTACCGCCAACATCGACTG+TGG + chr2_3:39094692-39094711 None:intergenic 60.0%
GTGCCTCAACAGCACACACG+TGG - chr2_3:39094925-39094944 Msa0290970:intron 60.0%
GATGACCCAGGAAGACCAGC+TGG - chr2_3:39095005-39095024 Msa0290970:CDS 60.0%
GGGCGAGGAGGAACCGATGA+AGG + chr2_3:39093445-39093464 None:intergenic 65.0%
!! CCGAGTTCTAGAGGGCGAGG+AGG + chr2_3:39093457-39093476 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 39090507 39097314 39090507 ID=Msa0290970;Name=Msa0290970
chr2_3 mRNA 39090507 39097314 39090507 ID=Msa0290970-mRNA-1;Parent=Msa0290970;Name=Msa0290970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=666|1|1|1|0.75|0.69|13|580|738
chr2_3 exon 39090507 39091069 39090507 ID=Msa0290970-mRNA-1:exon:12700;Parent=Msa0290970-mRNA-1
chr2_3 exon 39091172 39091560 39091172 ID=Msa0290970-mRNA-1:exon:12699;Parent=Msa0290970-mRNA-1
chr2_3 exon 39091879 39091974 39091879 ID=Msa0290970-mRNA-1:exon:12698;Parent=Msa0290970-mRNA-1
chr2_3 exon 39092703 39092974 39092703 ID=Msa0290970-mRNA-1:exon:12697;Parent=Msa0290970-mRNA-1
chr2_3 exon 39093115 39093289 39093115 ID=Msa0290970-mRNA-1:exon:12696;Parent=Msa0290970-mRNA-1
chr2_3 exon 39093410 39093610 39093410 ID=Msa0290970-mRNA-1:exon:12695;Parent=Msa0290970-mRNA-1
chr2_3 exon 39093750 39093851 39093750 ID=Msa0290970-mRNA-1:exon:12694;Parent=Msa0290970-mRNA-1
chr2_3 exon 39094008 39094448 39094008 ID=Msa0290970-mRNA-1:exon:12693;Parent=Msa0290970-mRNA-1
chr2_3 exon 39094926 39095114 39094926 ID=Msa0290970-mRNA-1:exon:12692;Parent=Msa0290970-mRNA-1
chr2_3 exon 39095208 39095325 39095208 ID=Msa0290970-mRNA-1:exon:12691;Parent=Msa0290970-mRNA-1
chr2_3 exon 39095474 39095767 39095474 ID=Msa0290970-mRNA-1:exon:12690;Parent=Msa0290970-mRNA-1
chr2_3 exon 39096255 39096514 39096255 ID=Msa0290970-mRNA-1:exon:12689;Parent=Msa0290970-mRNA-1
chr2_3 exon 39096952 39097314 39096952 ID=Msa0290970-mRNA-1:exon:12688;Parent=Msa0290970-mRNA-1
chr2_3 five_prime_UTR 39096952 39097314 39096952 ID=Msa0290970-mRNA-1:five_prime_utr;Parent=Msa0290970-mRNA-1
chr2_3 five_prime_UTR 39096255 39096514 39096255 ID=Msa0290970-mRNA-1:five_prime_utr;Parent=Msa0290970-mRNA-1
chr2_3 five_prime_UTR 39095725 39095767 39095725 ID=Msa0290970-mRNA-1:five_prime_utr;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39095474 39095724 39095474 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39095208 39095325 39095208 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39094926 39095114 39094926 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39094008 39094448 39094008 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39093750 39093851 39093750 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39093410 39093610 39093410 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39093115 39093289 39093115 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39092703 39092974 39092703 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39091879 39091974 39091879 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 CDS 39091189 39091560 39091189 ID=Msa0290970-mRNA-1:cds;Parent=Msa0290970-mRNA-1
chr2_3 three_prime_UTR 39091172 39091188 39091172 ID=Msa0290970-mRNA-1:three_prime_utr;Parent=Msa0290970-mRNA-1
chr2_3 three_prime_UTR 39090507 39091069 39090507 ID=Msa0290970-mRNA-1:three_prime_utr;Parent=Msa0290970-mRNA-1
Gene Sequence

>Msa0290970

ATGTTCCAGCCAAATCTAATGGAAGCTGGACAACATCATCAACTTCTGCCATTTGACATGACACAAAACAACAACAACACTTCAGAAAGTGATGTTCCAAGAATCCGTGAAGATGAATTATTCGACAGTGCTACAAAATCTGGTAACAGTGAAAATCAAGAAGCTGCTAATTCTGGTGAAGATCAAGAGCCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAGCATCAGATCCAAGAAATGGAAGCGTTTTTTAAGGAATGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGAGAGTTAGGGTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAGAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCACGAGAATACTTCACTTAGAACTGAGAATGAGAAACTTCGTGCCGATAACATGAGGTTTAGAGAAGCTCTAAGTAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCCATCGGAGAAATGTCGTTTGATGAACATCACTTGAGGCTTGAAAATTCCCGCCTTAGAGAAGAGATTGATAGGATATCTGCCATTGCTGCCAAGTACGTAGGAAAGCCAGTGGTGAGCTATCCACTACTCTCCCCTTCATCGGTTCCTCCTCGCCCTCTAGAACTCGGCATTGGTGGTTTCGGAGGACAACCAGGAATGGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCTACTGAAGCTGATAAACCAATGATAATTGAGCTAGCAGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTGCCTACACTTGAAGGAGGTTCCATACTCAATGAAGAGGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAGTGTGAAGCTTCAAGAGAATCTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTCTCTGGCATTGTCTCAAGAGCAATGACACTGGAAGTGCTATCAACTGGGGTGGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCAGAACTGCAAGTACCTTCACCACTTGTGCCAACTAGAGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCTGATGGAACTTGGGCAGTAGTGGATGTTTCTTTGGACAATTTACGCCCTAGTCCTTCTGCCAGATCCAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTACTCAAAGGTTATATGGGTTGAGCATGTTGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGTTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCCTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACAAACATTCCCACAGTCGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTCTGTGCTGGAGTGAGTGCCTCAACAGCACACACGTGGACAACACTTTCAGGCACAGGAGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTTCTAAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCAAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTACGGATTCAACAGGATCATTTGTGATATATGCACCTGTAGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGGGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGGACAACCACACCAAATGGAGGAGGTGTTGGTGAAACTGGACATGGTGGTGGATCTCTTTTGACTGTTGCATTTCAAATATTGGTTGATTCGGTTCCAACGGCAAAACTTTCTCTTGGTTCGGTTGCTACGGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA
Protein sequence

>Msa0290970

MFQPNLMEAGQHHQLLPFDMTQNNNNTSESDVPRIREDELFDSATKSGNSENQEAANSGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTSLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENSRLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGMGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLPTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARSRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTPNGGGVGETGHGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA*