AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0290950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290950 MtrunA17_Chr2g0322731 99.322 738 4 1 1 738 34 770 0.0 1521
Msa0290950 MtrunA17_Chr4g0024351 84.853 746 93 10 1 738 1 734 0.0 1249
Msa0290950 MtrunA17_Chr8g0350321 55.689 747 281 11 26 736 77 809 0.0 798
Msa0290950 MtrunA17_Chr7g0246631 56.860 707 258 13 61 736 87 777 0.0 785
Msa0290950 MtrunA17_Chr1g0203671 52.439 738 305 11 34 733 60 789 0.0 753
Msa0290950 MtrunA17_Chr6g0481041 49.364 707 316 14 63 734 25 724 0.0 681
Msa0290950 MtrunA17_Chr5g0394111 50.285 702 269 13 46 733 11 646 0.0 646
Msa0290950 MtrunA17_Chr5g0410711 44.490 735 357 14 37 733 57 778 0.0 633
Msa0290950 MtrunA17_Chr2g0331581 45.361 679 329 9 71 736 143 792 0.0 617
Msa0290950 MtrunA17_Chr6g0472471 43.624 745 361 14 34 733 35 765 0.0 601
Msa0290950 MtrunA17_Chr7g0224451 43.067 476 206 11 67 530 16 438 4.30e-122 372
Msa0290950 MtrunA17_Chr2g0292731 36.727 501 298 8 250 737 58 552 9.92e-105 331
Msa0290950 MtrunA17_Chr2g0292741 36.505 515 314 8 231 737 30 539 2.28e-102 324
Msa0290950 MtrunA17_Chr7g0224491 47.335 319 131 8 428 734 1 294 4.35e-84 268
Msa0290950 MtrunA17_Chr7g0224481 41.351 370 160 9 67 425 16 339 6.99e-82 264
Msa0290950 MtrunA17_Chr2g0292761 31.208 596 351 15 146 735 1 543 1.42e-75 254
Msa0290950 MtrunA17_Chr2g0319671 41.860 215 114 2 262 476 65 268 5.43e-50 177
Msa0290950 MtrunA17_Chr1g0205981 43.367 196 99 3 122 313 1 188 5.26e-41 149
Msa0290950 MtrunA17_Chr5g0419821 48.413 126 64 1 63 187 29 154 4.29e-36 134
Msa0290950 MtrunA17_Chr2g0319701 39.207 227 125 6 514 734 5 224 9.20e-36 135
Msa0290950 MtrunA17_Chr2g0319681 36.522 230 137 4 510 734 1 226 2.32e-35 134
Msa0290950 MtrunA17_Chr2g0319691 52.101 119 57 0 368 486 1 119 5.11e-35 130
Msa0290950 MtrunA17_Chr3g0140351 22.602 761 386 28 70 734 20 673 5.72e-27 117
Msa0290950 MtrunA17_Chr7g0224461 47.107 121 46 3 624 733 1 114 2.75e-23 95.5
Msa0290950 MtrunA17_Chr7g0224431 35.484 155 60 3 283 436 6 121 1.69e-16 76.3
Msa0290950 MtrunA17_Chr2g0304191 32.061 131 87 1 264 392 1 131 2.80e-16 76.3
Msa0290950 MtrunA17_Chr4g0028991 22.846 499 280 17 312 734 212 681 2.30e-15 80.5
Msa0290950 MtrunA17_Chr4g0028991 31.405 121 69 3 50 159 8 125 4.52e-13 73.2
Msa0290950 MtrunA17_Chr1g0179581 36.047 86 52 1 65 150 26 108 1.14e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0290950 AT1G05230.8 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.4 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.9 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.10 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.7 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.11 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.2 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.6 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.5 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.1 76.954 742 146 7 1 738 1 721 0.0 1140
Msa0290950 AT1G05230.3 76.685 742 146 8 1 738 1 719 0.0 1131
Msa0290950 AT4G04890.2 73.705 753 168 10 1 737 1 739 0.0 1124
Msa0290950 AT4G04890.1 73.705 753 168 10 1 737 1 739 0.0 1124
Msa0290950 AT4G21750.2 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290950 AT4G21750.1 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290950 AT4G21750.3 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290950 AT4G21750.4 71.948 770 176 8 1 738 1 762 0.0 1110
Msa0290950 AT1G05230.12 75.444 619 132 6 1 615 1 603 0.0 942
Msa0290950 AT2G32370.1 53.846 702 288 12 42 730 39 717 0.0 745
Msa0290950 AT3G61150.1 51.135 749 316 8 24 733 66 803 0.0 739
Msa0290950 AT4G00730.1 53.709 728 300 13 26 736 94 801 0.0 733
Msa0290950 AT1G73360.1 47.845 696 338 9 63 738 28 718 0.0 643
Msa0290950 AT1G17920.2 47.076 701 334 12 48 734 5 682 0.0 618
Msa0290950 AT1G17920.1 47.076 701 334 12 48 734 5 682 0.0 618
Msa0290950 AT5G52170.2 45.504 734 329 15 16 733 5 683 0.0 609
Msa0290950 AT5G52170.3 45.640 734 323 17 16 733 5 678 0.0 605
Msa0290950 AT5G52170.1 45.640 734 323 17 16 733 5 678 0.0 605
Msa0290950 AT5G46880.3 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290950 AT5G46880.1 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290950 AT5G46880.2 45.404 718 343 18 60 738 104 811 0.0 603
Msa0290950 AT1G79840.1 42.714 700 337 14 55 736 92 745 0.0 555
Msa0290950 AT1G79840.3 42.714 700 337 14 55 736 34 687 0.0 554
Msa0290950 AT1G79840.6 42.714 700 337 14 55 736 34 687 0.0 554
Msa0290950 AT1G79840.2 42.714 700 337 14 55 736 121 774 0.0 553
Msa0290950 AT4G17710.1 42.258 691 329 17 57 737 77 707 4.58e-172 511
Msa0290950 AT1G79840.4 43.386 567 273 12 55 611 92 620 1.31e-155 466
Msa0290950 AT3G03260.1 38.732 710 392 18 48 734 6 695 1.22e-150 455
Msa0290950 AT4G00730.2 49.167 480 212 9 26 490 94 556 3.65e-146 439
Msa0290950 AT4G25530.1 37.353 680 394 11 58 733 31 682 1.72e-144 439
Msa0290950 AT5G17320.1 34.747 731 422 19 45 736 4 718 1.36e-127 396
Msa0290950 AT1G34650.1 34.233 704 404 15 74 736 23 708 5.58e-117 368
Msa0290950 AT3G03260.2 38.532 545 314 14 48 583 6 538 8.65e-112 349
Msa0290950 AT1G79840.5 42.601 446 208 11 55 490 92 499 9.56e-110 343
Msa0290950 AT5G07260.1 26.364 550 325 17 134 672 11 491 1.21e-43 166
Msa0290950 AT5G07260.2 26.230 549 322 17 134 672 11 486 5.53e-43 164
Msa0290950 AT1G52150.3 21.925 748 409 29 70 734 17 672 5.83e-22 102
Msa0290950 AT1G52150.1 21.925 748 409 29 70 734 17 672 8.77e-22 101
Msa0290950 AT1G52150.2 21.896 749 409 29 70 734 17 673 1.08e-21 101
Msa0290950 AT1G30490.1 22.638 508 294 18 298 734 199 678 1.28e-15 81.6
Msa0290950 AT4G26920.1 21.414 481 258 14 264 728 72 448 8.39e-14 75.1
Msa0290950 AT5G60690.1 25.000 304 192 10 298 584 190 474 2.66e-11 67.8
Msa0290950 AT5G60690.1 27.273 187 92 6 46 201 11 184 5.02e-11 67.0

Find 243 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTACGCTTCCATTTCT+TGG 0.138519 2_3:-39074619 None:intergenic
CATCATCTGAAAGCCATTTA+AGG 0.155720 2_3:+39073650 Msa0290950:five_prime_UTR
AAAATTTCCCCTAGGTTATA+TGG 0.155848 2_3:+39076803 Msa0290950:intron
AACAATAACGTTGGTGTCTT+TGG 0.194570 2_3:+39073802 Msa0290950:five_prime_UTR
CACTTAAAACCAGCTGGTTT+TGG 0.238060 2_3:-39076008 None:intergenic
TAGCAATATGTGCCATTTCT+TGG 0.247675 2_3:-39078163 None:intergenic
AAAGGTAGTAGATTGTTTAA+AGG 0.257548 2_3:-39072906 None:intergenic
ATATTCCTCTTCATTGAGTA+TGG 0.259965 2_3:-39075958 None:intergenic
GACTGTTGCATTTCAAATAT+TGG 0.260496 2_3:+39078784 Msa0290950:CDS
GGCAGTAGTGGATGTTTCTT+TGG 0.266653 2_3:+39076588 Msa0290950:CDS
TCCTTCCTTTGCTTGTCATC+AGG 0.267823 2_3:-39074805 None:intergenic
AAGGGAAAAGCATTGCATTT+TGG 0.268583 2_3:+39079054 Msa0290950:three_prime_UTR
AATTCATCTTCACGGATTCT+TGG 0.284298 2_3:-39074479 None:intergenic
CACACGTGGACAACACTTTC+AGG 0.288181 2_3:+39077227 Msa0290950:CDS
TACAAGCAGCTTGTTAGTTC+TGG 0.292041 2_3:+39076868 Msa0290950:CDS
GGCTTATATTCAAGACTATA+TGG 0.292382 2_3:+39079304 Msa0290950:three_prime_UTR
AAGGAACTGAGCAGAGAGTT+AGG 0.301450 2_3:+39074823 Msa0290950:CDS
AAGGTAGTAGATTGTTTAAA+GGG 0.305251 2_3:-39072905 None:intergenic
ACAATGCCAGCTGGTCTTCC+TGG 0.308126 2_3:-39077299 None:intergenic
AGCCATTACAAGTGAAGTTT+TGG 0.309939 2_3:+39074851 Msa0290950:CDS
GTTATGGAAAGTTGGGTATA+TGG 0.311170 2_3:-39072983 None:intergenic
GTTGCATTTACTATTATCTA+AGG 0.315748 2_3:-39079207 None:intergenic
GTCTTTCACATTGTCGATCT+AGG 0.317831 2_3:-39076924 None:intergenic
AATCAAGAAGCTGCTAATTC+TGG 0.319183 2_3:+39074536 Msa0290950:CDS
GAACTCGGCATTGGTGGTTT+CGG 0.320296 2_3:+39075756 Msa0290950:CDS
TTGTACTGTTGAGAGGATTA+AGG 0.330586 2_3:+39078871 Msa0290950:CDS
TACATATCTCCTCCCATTCC+TGG 0.333263 2_3:-39075786 None:intergenic
AGGATTAAGGCTTCTTTGTC+TGG 0.337763 2_3:+39078884 Msa0290950:CDS
GCAACCAGAAGGCCTTCTTC+TGG 0.341248 2_3:-39076641 None:intergenic
GGAGGAGGTGTTGGTGAAAC+TGG 0.354741 2_3:+39078740 Msa0290950:CDS
TGTCCAGCTTCCATTAGATT+TGG 0.355568 2_3:-39074392 None:intergenic
TTTGGTGTGGTTGTCCCATC+TGG 0.359343 2_3:-39078716 None:intergenic
CGTTACATTAGATGACTTGA+TGG 0.359804 2_3:-39078920 None:intergenic
GTAATATCAACATGTTGCTT+TGG 0.360562 2_3:-39078562 None:intergenic
TTCTCTAAACCTCATGTTAT+CGG 0.361729 2_3:-39075052 None:intergenic
GATTGAAAACAATAAGCATT+TGG 0.362525 2_3:+39074339 Msa0290950:intron
GACTGAGAGGATTAAGGTTC+GGG 0.364771 2_3:+39079175 Msa0290950:three_prime_UTR
TATAGATATATTGTCTTAGA+AGG 0.366422 2_3:-39079358 None:intergenic
CCTTCCTTTGCTTGTCATCA+GGG 0.367415 2_3:-39074804 None:intergenic
ATTGCTAATGGAAGAGATAC+TGG 0.369741 2_3:+39078179 Msa0290950:CDS
GGAAGAAGTGCTACATAATC+TGG 0.371226 2_3:-39078674 None:intergenic
GTGCTATCAACTGGGGTGGC+AGG 0.373210 2_3:+39076310 Msa0290950:CDS
TTCGACAGTGCTACAAAATC+TGG 0.373686 2_3:+39074503 Msa0290950:CDS
TTGAGGAAGTTATGGAAAGT+TGG 0.374900 2_3:-39072991 None:intergenic
TATGTAGCACTTCTTCCATC+TGG 0.375152 2_3:+39078680 Msa0290950:CDS
GGCAAAACTTTCTCTTGGTT+CGG 0.376070 2_3:+39078823 Msa0290950:CDS
CTGAAATTGAGTAGACAAAA+TGG 0.376478 2_3:-39079564 None:intergenic
CACTGGCTTTCCTACGTACT+TGG 0.377299 2_3:-39075685 None:intergenic
GTTAGTTCTGGACATGCATT+TGG 0.380690 2_3:+39076880 Msa0290950:CDS
CTGGATCTGGCAGAAGGACT+AGG 0.382500 2_3:-39076622 None:intergenic
ACTGAGGACTGAGAGGATTA+AGG 0.383946 2_3:+39079169 Msa0290950:three_prime_UTR
GAATGTATACCTCTTCTCTA+AGG 0.384454 2_3:-39075170 None:intergenic
ACACTGGAAGTGCTATCAAC+TGG 0.386707 2_3:+39076301 Msa0290950:CDS
CTGGGTCATCTACACTCTTA+CGG 0.388294 2_3:-39077280 None:intergenic
GCAATGAATGTGGTTCTAAA+TGG 0.388547 2_3:+39078644 Msa0290950:CDS
TGAGGAAGTTATGGAAAGTT+GGG 0.392762 2_3:-39072990 None:intergenic
GAAATGGCACATATTGCTAA+TGG 0.396088 2_3:+39078167 Msa0290950:CDS
ACATACTCTTTCTCCCATCT+TGG 0.396801 2_3:-39077145 None:intergenic
ACTCATTGGAATGGCACAAA+TGG 0.397042 2_3:+39075899 Msa0290950:CDS
GCAGTTGGTCCACCACAATT+AGG 0.400312 2_3:-39075096 None:intergenic
GATTCTTCTGTCAGCTTTAG+CGG 0.401217 2_3:-39073615 None:intergenic
ATAACCTTTGAGTAGCCATT+TGG 0.403234 2_3:-39076679 None:intergenic
AAAGCACAAATGACAATAGA+AGG 0.404339 2_3:-39079447 None:intergenic
ACTGCTAGCTCAATTATCAT+TGG 0.404803 2_3:-39075861 None:intergenic
ATTTCAAATATTGGTTGATT+CGG 0.406456 2_3:+39078793 Msa0290950:CDS
AAATTTCCCCTAGGTTATAT+GGG 0.407762 2_3:+39076804 Msa0290950:intron
CTTTGGTTGCCTACACTTGA+AGG 0.408059 2_3:+39075930 Msa0290950:CDS
CTTTGCTTGTCATCAGGGTG+TGG 0.418881 2_3:-39074799 None:intergenic
TGAGAGGACAAAGGAATTGA+AGG 0.418990 2_3:-39072843 None:intergenic
TGGGTCATCTACACTCTTAC+GGG 0.423400 2_3:-39077279 None:intergenic
CAGCTTCCATTAGATTTGGC+TGG 0.429412 2_3:-39074388 None:intergenic
TCACCAACACCTCCTCCATT+TGG 0.438216 2_3:-39078734 None:intergenic
AATGTTCCAGCCAAATCTAA+TGG 0.438842 2_3:+39074382 Msa0290950:exon
CCAACGGCAAAACTTTCTCT+TGG 0.441531 2_3:+39078818 Msa0290950:CDS
GCACAGGAGCTGATGATGTA+AGG 0.441905 2_3:+39077249 Msa0290950:CDS
AGCAACATGCTGATGGAACT+TGG 0.445791 2_3:+39076566 Msa0290950:CDS
CCTCTAGAACTCGGCATTGG+TGG 0.447065 2_3:+39075750 Msa0290950:CDS
TTCTCTTGGTTCGGTTGCTA+CGG 0.447827 2_3:+39078832 Msa0290950:CDS
AGAAGGCCTTCTTCTGGATC+TGG 0.453379 2_3:-39076635 None:intergenic
AACCAAAACTTCACTTGTAA+TGG 0.453525 2_3:-39074853 None:intergenic
AACCTTAAAGAAGGATAAAA+CGG 0.454387 2_3:-39079522 None:intergenic
ATGAGGAGGCAAGAGAACTT+AGG 0.455868 2_3:+39079080 Msa0290950:three_prime_UTR
ACAGCATCAGATCCAAGAAA+TGG 0.457226 2_3:+39074607 Msa0290950:CDS
TGAGCTAGCAGTTGCTGCTA+TGG 0.464050 2_3:+39075872 Msa0290950:CDS
TTCTTGGACAACTCCACCAT+TGG 0.466612 2_3:-39078147 None:intergenic
GGACTGAGAGGATTAAGGTT+CGG 0.467189 2_3:+39079174 Msa0290950:three_prime_UTR
GATGGGACAACCACACCAAA+TGG 0.467628 2_3:+39078719 Msa0290950:CDS
CTCTCTCTAGTTGGCACAAG+TGG 0.472336 2_3:-39076523 None:intergenic
TGGTGGAGTTGTCCAAGAAA+TGG 0.474459 2_3:+39078151 Msa0290950:CDS
CTCTTGTGCAGTTAAGAAGA+AGG 0.474651 2_3:+39079028 Msa0290950:intron
GGAGGAGATATGTATGGAGC+TGG 0.474886 2_3:+39075795 Msa0290950:CDS
TCAATGAAGAGGAATATGTT+AGG 0.476700 2_3:+39075964 Msa0290950:CDS
GGGCGAGGAGGAACCGATGA+AGG 0.476736 2_3:-39075729 None:intergenic
ACAAAATAACTCTCTCTAGT+TGG 0.477153 2_3:-39076532 None:intergenic
TTCGGAGGACAACCAGGAAT+GGG 0.477190 2_3:+39075774 Msa0290950:CDS
TCTTTCACATTGTCGATCTA+GGG 0.482839 2_3:-39076923 None:intergenic
TGTCGAATAATTCATCTTCA+CGG 0.483352 2_3:-39074487 None:intergenic
GAAGATGAAGAAGATGAAGA+AGG 0.496661 2_3:-39072866 None:intergenic
TCCTACGTACTTGGCAGCAA+TGG 0.502677 2_3:-39075676 None:intergenic
GAGAGTTGTACGGATTCAAC+AGG 0.503171 2_3:+39078587 Msa0290950:CDS
CGCCCTCTAGAACTCGGCAT+TGG 0.503902 2_3:+39075747 Msa0290950:CDS
CACTGGAAGTGCTATCAACT+GGG 0.506183 2_3:+39076302 Msa0290950:CDS
ATTGAATGCATGTTACTAGC+TGG 0.506437 2_3:-39073766 None:intergenic
AGATCCAGAAGAAGGCCTTC+TGG 0.506911 2_3:+39076637 Msa0290950:CDS
GGCGAGGAGGAACCGATGAA+GGG 0.507726 2_3:-39075728 None:intergenic
TTCATCTCTCTCTCTATCCC+AGG 0.507918 2_3:+39073831 Msa0290950:five_prime_UTR
CAATGCCAGCTGGTCTTCCT+GGG 0.508862 2_3:-39077298 None:intergenic
CTCATTGGAATGGCACAAAT+GGG 0.511283 2_3:+39075900 Msa0290950:CDS
CAGAGAAAACTGTGGACCAT+TGG 0.512102 2_3:-39076258 None:intergenic
ACATTTCAAAACCTTAAAGA+AGG 0.512833 2_3:-39079531 None:intergenic
TTAATTCAAGAAATGCCAAA+TGG 0.513645 2_3:+39076664 Msa0290950:CDS
TTTCGGAGGACAACCAGGAA+TGG 0.514423 2_3:+39075773 Msa0290950:CDS
TGAGGAGGCAAGAGAACTTA+GGG 0.514455 2_3:+39079081 Msa0290950:three_prime_UTR
TGCTATCAACTGGGGTGGCA+GGG 0.518257 2_3:+39076311 Msa0290950:CDS
AGGAACTGAGCAGAGAGTTA+GGG 0.519123 2_3:+39074824 Msa0290950:CDS
GCTGCTATGGAGGAACTCAT+TGG 0.520147 2_3:+39075885 Msa0290950:CDS
TTGTGGTTTATAAGAACCAA+TGG 0.522609 2_3:+39076242 Msa0290950:intron
GCTTCACACTTAAAACCAGC+TGG 0.523425 2_3:-39076014 None:intergenic
TGAAGAAGGTGAGAGGACAA+AGG 0.524909 2_3:-39072852 None:intergenic
TCCACTACTCTCCCCTTCAT+CGG 0.525289 2_3:+39075716 Msa0290950:CDS
TTCATTGCAACTATGTCTAC+AGG 0.525326 2_3:-39078629 None:intergenic
CAGCCAAATCTAATGGAAGC+TGG 0.529949 2_3:+39074389 Msa0290950:CDS
TGTGGGAATGTTTGTTGCCA+TGG 0.531917 2_3:-39076956 None:intergenic
GTATACCTCTTCTCTAAGGC+GGG 0.534397 2_3:-39075166 None:intergenic
GAACAAACGTACTCAAATGA+AGG 0.534903 2_3:+39074879 Msa0290950:CDS
TTTCCCACTTACCAAGAGGA+AGG 0.535363 2_3:-39073143 None:intergenic
GATATTACAAGAGAGTTGTA+CGG 0.536286 2_3:+39078577 Msa0290950:CDS
CACAAATGGGTGATCCACTT+TGG 0.540052 2_3:+39075913 Msa0290950:CDS
GCGAGGAGGAACCGATGAAG+GGG 0.541185 2_3:-39075727 None:intergenic
GAAATTAACCACTGTTTGCA+TGG 0.541790 2_3:-39079487 None:intergenic
AAAGAAATAGAGTGAACGGA+TGG 0.543476 2_3:-39072813 None:intergenic
GACATTTCTCCGATGGCAGT+TGG 0.544696 2_3:-39075111 None:intergenic
AGTAACATGCATTCAATGAT+CGG 0.546113 2_3:+39073772 Msa0290950:five_prime_UTR
AAATTCCCGCCTTAGAGAAG+AGG 0.547209 2_3:+39075161 Msa0290950:CDS
CTAGTTGGCACAAGTGGTGA+AGG 0.548358 2_3:-39076517 None:intergenic
GCTTCTTGTCCTAATTGTGG+TGG 0.548941 2_3:+39075087 Msa0290950:CDS
CTCAGTTGGTCGTTCTGAGA+AGG 0.549427 2_3:-39079152 None:intergenic
CTCGGCATTGGTGGTTTCGG+AGG 0.549851 2_3:+39075759 Msa0290950:CDS
GGAATGGGAGGAGATATGTA+TGG 0.550014 2_3:+39075789 Msa0290950:CDS
GGTGAAACTGGACATGGTGG+TGG 0.551703 2_3:+39078752 Msa0290950:CDS
TTATTGCTTGTACTGTTGAG+AGG 0.553910 2_3:+39078864 Msa0290950:CDS
CCACCAATGCCGAGTTCTAG+AGG 0.555033 2_3:-39075750 None:intergenic
ATTGGTTGATTCGGTTCCAA+CGG 0.555616 2_3:+39078802 Msa0290950:CDS
AAGAAGATGAAGAAGGTGAG+AGG 0.558791 2_3:-39072859 None:intergenic
ATCAAACGACATTTCTCCGA+TGG 0.559536 2_3:-39075118 None:intergenic
CTTCTGCCAGATCCAGAAGA+AGG 0.560942 2_3:+39076629 Msa0290950:CDS
ACACCAAATGGAGGAGGTGT+TGG 0.560944 2_3:+39078731 Msa0290950:CDS
CTTCTTCTGGATCTGGCAGA+AGG 0.561436 2_3:-39076628 None:intergenic
AATAGAGTGAACGGATGGAG+AGG 0.563194 2_3:-39072808 None:intergenic
TCTTGTGCAGTTAAGAAGAA+GGG 0.563569 2_3:+39079029 Msa0290950:intron
AACACCTCCTCCATTTGGTG+TGG 0.563793 2_3:-39078729 None:intergenic
GGAATTGGTCCAAAACCAGC+TGG 0.564202 2_3:+39075999 Msa0290950:CDS
GGATTTGCTATACTTCCAGA+TGG 0.564453 2_3:+39078701 Msa0290950:CDS
CAGTTAAGAAGAAGGGCAAA+GGG 0.565908 2_3:+39079036 Msa0290950:intron
TATTGTAAGCAACATGCTGA+TGG 0.566221 2_3:+39076559 Msa0290950:CDS
ATGTGCATAAGCTTCTGTGC+TGG 0.567127 2_3:+39077185 Msa0290950:CDS
ATGGGTTGAGCATGTTGAAG+TGG 0.567383 2_3:+39076822 Msa0290950:CDS
TTATTTATATTTAAAACGGA+AGG 0.567607 2_3:-39079231 None:intergenic
TAGTGATAACAAACCAAGAT+GGG 0.567631 2_3:+39077132 Msa0290950:intron
TGGATCTGGCAGAAGGACTA+GGG 0.567829 2_3:-39076621 None:intergenic
TCTTGAATTAAGCAACCAGA+AGG 0.568304 2_3:-39076652 None:intergenic
ATGCCGAGTTCTAGAGGGCG+AGG 0.568671 2_3:-39075744 None:intergenic
ATAGCAACTACCCTTCCTCT+TGG 0.569307 2_3:+39073132 Msa0290950:five_prime_UTR
ATGCATTTGGTGCAAAACGT+TGG 0.570053 2_3:+39076893 Msa0290950:CDS
TGTGGTGGACCAACTGCCAT+CGG 0.570061 2_3:+39075102 Msa0290950:CDS
GGTGGTTTCGGAGGACAACC+AGG 0.570493 2_3:+39075768 Msa0290950:CDS
GATGACCCAGGAAGACCAGC+TGG 0.571107 2_3:+39077293 Msa0290950:CDS
GATCTTCTTAGATCAATAAG+TGG 0.572048 2_3:+39075819 Msa0290950:CDS
TTAGTGATAACAAACCAAGA+TGG 0.574822 2_3:+39077131 Msa0290950:intron
ATTGGTTTATCAGCTTCAGT+AGG 0.576989 2_3:-39075843 None:intergenic
TAACCTTGTTGAGATTCTCA+TGG 0.576995 2_3:+39076073 Msa0290950:CDS
CACAGGAGCTGATGATGTAA+GGG 0.577558 2_3:+39077250 Msa0290950:CDS
GCACTTAGAACAATGCCAGC+TGG 0.578109 2_3:-39077308 None:intergenic
ACCGATGAAGGGGAGAGTAG+TGG 0.579805 2_3:-39075717 None:intergenic
CCTCCTCGCCCTCTAGAACT+CGG 0.581323 2_3:+39075741 Msa0290950:CDS
AACATTCCCACAGTCGATGT+TGG 0.581462 2_3:+39076967 Msa0290950:CDS
TGTCCACGTGTGTGCTGTTG+AGG 0.582831 2_3:-39077216 None:intergenic
TAATCCTCTCAGTCCTCAGT+TGG 0.583524 2_3:-39079166 None:intergenic
TGAATGTGGTTCTAAATGGA+GGG 0.584402 2_3:+39078648 Msa0290950:CDS
TTCCCACTTACCAAGAGGAA+GGG 0.587238 2_3:-39073142 None:intergenic
TGTTGAGATTCTCATGGATG+TGG 0.587472 2_3:+39076079 Msa0290950:CDS
TGGGATATCCTTTCCAATGG+TGG 0.588001 2_3:+39078134 Msa0290950:CDS
CGTTTGATGAACATCACTTG+AGG 0.589246 2_3:+39075133 Msa0290950:CDS
AATGCTTCTTGTCCTAATTG+TGG 0.590261 2_3:+39075084 Msa0290950:CDS
TGATTGTGAAATATGCAAGC+TGG 0.590342 2_3:+39073733 Msa0290950:five_prime_UTR
GGATCTGATGCTGTGTATGA+CGG 0.590628 2_3:-39074598 None:intergenic
CCCTGATGACAAGCAAAGGA+AGG 0.591678 2_3:+39074804 Msa0290950:CDS
AGTAGTGGATAGCTCACCAC+TGG 0.592239 2_3:-39075702 None:intergenic
CTTCTCAGAACGACCAACTG+AGG 0.592750 2_3:+39079153 Msa0290950:three_prime_UTR
GCTAGCAGTTGCTGCTATGG+AGG 0.593019 2_3:+39075875 Msa0290950:CDS
TGGACAACACTTTCAGGCAC+AGG 0.595843 2_3:+39077233 Msa0290950:CDS
TGTATACCTCTTCTCTAAGG+CGG 0.598180 2_3:-39075167 None:intergenic
GCAACATGCTGATGGAACTT+GGG 0.599510 2_3:+39076567 Msa0290950:CDS
ATGGAACCTCCTTCAAGTGT+AGG 0.599518 2_3:-39075939 None:intergenic
GAATGTGGTTCTAAATGGAG+GGG 0.601539 2_3:+39078649 Msa0290950:CDS
GGACAACTCCACCATTGGAA+AGG 0.603145 2_3:-39078142 None:intergenic
AATGCCAAATGGCTACTCAA+AGG 0.605118 2_3:+39076675 Msa0290950:CDS
TGTCTCAAGAGCAATGACAC+TGG 0.606529 2_3:+39076285 Msa0290950:CDS
ATTCCCACAGTCGATGTTGG+CGG 0.607641 2_3:+39076970 Msa0290950:CDS
GGTACCGCCAACATCGACTG+TGG 0.611425 2_3:-39076974 None:intergenic
CACCAATGCCGAGTTCTAGA+GGG 0.615823 2_3:-39075749 None:intergenic
GCAGTTAAGAAGAAGGGCAA+AGG 0.617155 2_3:+39079035 Msa0290950:intron
AACTTCGTGCCGATAACATG+AGG 0.617798 2_3:+39075043 Msa0290950:CDS
CACACCCTGATGACAAGCAA+AGG 0.619885 2_3:+39074800 Msa0290950:CDS
CAGTGGGATATCCTTTCCAA+TGG 0.619986 2_3:+39078131 Msa0290950:intron
GGAAGTATAGCAAATCCAGA+TGG 0.620130 2_3:-39078695 None:intergenic
AGGTTCCATACTCAATGAAG+AGG 0.621981 2_3:+39075953 Msa0290950:CDS
TATGGAGGAACTCATTGGAA+TGG 0.622262 2_3:+39075890 Msa0290950:CDS
TGATGGAACTTGGGCAGTAG+TGG 0.623796 2_3:+39076576 Msa0290950:CDS
AGAGAGATAGAAGCTAGAAG+AGG 0.624084 2_3:-39073109 None:intergenic
GTTTGCAGACTCAACAGGAG+AGG 0.625915 2_3:+39074986 Msa0290950:intron
GATTTGCTATACTTCCAGAT+GGG 0.631821 2_3:+39078702 Msa0290950:CDS
TAACGTTTCTTCTTAGCACG+AGG 0.632532 2_3:-39074572 None:intergenic
GGAAGTGCTATCAACTGGGG+TGG 0.632566 2_3:+39076306 Msa0290950:CDS
GGAGGACAACCAGGAATGGG+AGG 0.639321 2_3:+39075777 Msa0290950:CDS
TCAAGTGTAGGCAACCAAAG+TGG 0.640121 2_3:-39075927 None:intergenic
CTACAATGGTGCATTACAAG+TGG 0.640429 2_3:+39076336 Msa0290950:CDS
GTACCGCCAACATCGACTGT+GGG 0.642719 2_3:-39076973 None:intergenic
ACAACCACACCAAATGGAGG+AGG 0.644018 2_3:+39078725 Msa0290950:CDS
GTGCCTCAACAGCACACACG+TGG 0.644853 2_3:+39077213 Msa0290950:CDS
TCTGAGAAGGAAATCTTGCA+AGG 0.646214 2_3:-39079139 None:intergenic
GACAATAGAAGGAACATGAG+AGG 0.647575 2_3:-39079436 None:intergenic
ATGAATGTGGTTCTAAATGG+AGG 0.647763 2_3:+39078647 Msa0290950:CDS
GGGGTGGCAGGGAACTACAA+TGG 0.649866 2_3:+39076322 Msa0290950:CDS
ACGGATGGAGAGGAAAATTG+TGG 0.650847 2_3:-39072798 None:intergenic
TGGTTGCCTACACTTGAAGG+AGG 0.652894 2_3:+39075933 Msa0290950:CDS
GGAAGAAACAACAATAACGT+TGG 0.654744 2_3:+39073793 Msa0290950:five_prime_UTR
AGATGAAAACTCAAGAAGTG+AGG 0.655242 2_3:+39077385 Msa0290950:CDS
CATGTTGAAGTGGATGATAG+AGG 0.665308 2_3:+39076832 Msa0290950:CDS
GGGACAACCACACCAAATGG+AGG 0.673800 2_3:+39078722 Msa0290950:CDS
CATCCATGAGAATCTCAACA+AGG 0.674971 2_3:-39076076 None:intergenic
ACGACCAACTGAGGACTGAG+AGG 0.677160 2_3:+39079162 Msa0290950:three_prime_UTR
CGTAAGAGTGTAGATGACCC+AGG 0.679064 2_3:+39077281 Msa0290950:CDS
GCCATTGCTGCCAAGTACGT+AGG 0.683580 2_3:+39075675 Msa0290950:CDS
CCGAGTTCTAGAGGGCGAGG+AGG 0.684847 2_3:-39075741 None:intergenic
GTTGGTGAAACTGGACATGG+TGG 0.688482 2_3:+39078749 Msa0290950:CDS
TGAAAGACTTGCTAGTGCCA+TGG 0.696212 2_3:+39076939 Msa0290950:CDS
TTGCACTACCATGCAAACAG+TGG 0.696826 2_3:+39079479 Msa0290950:three_prime_UTR
CAAGTACGTAGGAAAGCCAG+TGG 0.711066 2_3:+39075686 Msa0290950:CDS
GGTGTTGGTGAAACTGGACA+TGG 0.714667 2_3:+39078746 Msa0290950:CDS
AGACATAGTTGCAATGAATG+TGG 0.720864 2_3:+39078634 Msa0290950:CDS
GACAATGCCAGAGAAAACTG+TGG 0.735059 2_3:-39076266 None:intergenic
ACTGGAAGTGCTATCAACTG+GGG 0.765115 2_3:+39076303 Msa0290950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAACTAAATAATATT+GGG - chr2_3:39073493-39073512 None:intergenic 10.0%
!! AAACAAAAACTAAATAATAT+TGG - chr2_3:39073494-39073513 None:intergenic 10.0%
!!! AATTTTTGATAAAAATGTTA+TGG - chr2_3:39073875-39073894 None:intergenic 10.0%
!!! ATGTTAATTTAATTTGATAA+AGG + chr2_3:39073934-39073953 Msa0290950:intron 10.0%
!!! TGTTAATTTAATTTGATAAA+GGG + chr2_3:39073935-39073954 Msa0290950:intron 10.0%
!!! TTTTGTTAAATTAATTTATG+TGG + chr2_3:39074746-39074765 Msa0290950:intron 10.0%
!!! GGATTTTTTTATTTTATTTT+TGG + chr2_3:39074924-39074943 Msa0290950:intron 10.0%
!! CAATGATATAAAAATAAAAA+TGG + chr2_3:39077961-39077980 Msa0290950:intron 10.0%
!!! TTTTACAAAAACAATGATAT+TGG - chr2_3:39073212-39073231 None:intergenic 15.0%
!!! TTGTTTTTGTAAAACTAAAT+CGG + chr2_3:39073218-39073237 Msa0290950:intron 15.0%
!! AATGATAAAGAAAAAAAATC+TGG + chr2_3:39073456-39073475 Msa0290950:intron 15.0%
!! ACAAAAACTAAATAATATTG+GGG - chr2_3:39073492-39073511 None:intergenic 15.0%
!! AGAGAAAAAAAATTAAAAGA+AGG + chr2_3:39073689-39073708 Msa0290950:five_prime_UTR 15.0%
!!! TTTTTTTATAAGTCAACATT+TGG + chr2_3:39073992-39074011 Msa0290950:intron 15.0%
!!! TTTAACTGTTTTTTCTTTTT+TGG + chr2_3:39074721-39074740 Msa0290950:intron 15.0%
!!! GGTATTTGATTTTATTAATT+TGG + chr2_3:39074900-39074919 Msa0290950:intron 15.0%
!!! ATTTGATTTTATTAATTTGG+AGG + chr2_3:39074903-39074922 Msa0290950:intron 15.0%
!!! CATAGAATGATATTTTTTTT+TGG + chr2_3:39074964-39074983 Msa0290950:intron 15.0%
!!! ATTTTAACCTTCTTTAATTT+TGG + chr2_3:39075624-39075643 Msa0290950:intron 15.0%
!!! TTATCTAATCTTAAAGTTTT+AGG + chr2_3:39077458-39077477 Msa0290950:intron 15.0%
!! AATTTGTAAGAAAAACTATA+AGG - chr2_3:39077884-39077903 None:intergenic 15.0%
!!! TATAGTTTTTCTTACAAATT+AGG + chr2_3:39077884-39077903 Msa0290950:intron 15.0%
!!! ATAGTTTTTCTTACAAATTA+GGG + chr2_3:39077885-39077904 Msa0290950:intron 15.0%
!!! TTTTTATATCATTGTGTAAT+TGG - chr2_3:39077955-39077974 None:intergenic 15.0%
!!! TTCAATTTAGATTTTTCATA+GGG - chr2_3:39078471-39078490 None:intergenic 15.0%
!!! TTTCAATTTAGATTTTTCAT+AGG - chr2_3:39078472-39078491 None:intergenic 15.0%
!!! TTATTTATATTTAAAACGGA+AGG - chr2_3:39079234-39079253 None:intergenic 15.0%
!! AATAAAAAGTCAAATGTATT+TGG + chr2_3:39079249-39079268 Msa0290950:three_prime_UTR 15.0%
!! AAGATGAATATGAAAAAAGA+AGG - chr2_3:39073026-39073045 None:intergenic 20.0%
!!! TAGTTTTTGTTTATAAAGTG+AGG + chr2_3:39073502-39073521 Msa0290950:intron 20.0%
!!! TTTTTCTCTCATGTTATTTA+CGG + chr2_3:39073549-39073568 Msa0290950:intron 20.0%
!!! AAAGGTTTTTTTGTTTGTTT+AGG - chr2_3:39074036-39074055 None:intergenic 20.0%
!! TAAATAGTGAAAAAGTGAAA+AGG - chr2_3:39074113-39074132 None:intergenic 20.0%
!!! TTGTTTGTTTAGGTTTTTTA+AGG + chr2_3:39074771-39074790 Msa0290950:intron 20.0%
!! ATTAACACCAAAATTAAAGA+AGG - chr2_3:39075634-39075653 None:intergenic 20.0%
!!! TTTTTAAAAAAATTTCCCCT+AGG + chr2_3:39076795-39076814 Msa0290950:intron 20.0%
!!! AGAAATTCAAAAACTCTTTT+TGG - chr2_3:39077362-39077381 None:intergenic 20.0%
!!! CTTTAAGATTAGATAATGAT+TGG - chr2_3:39077454-39077473 None:intergenic 20.0%
!! ATTATAGAGTCTTCATTAAA+AGG - chr2_3:39077716-39077735 None:intergenic 20.0%
!! GATGACATAAGATAAAAAAA+GGG - chr2_3:39077761-39077780 None:intergenic 20.0%
!! AGATGACATAAGATAAAAAA+AGG - chr2_3:39077762-39077781 None:intergenic 20.0%
!!! ATGTACTGATTTTTTTACTA+GGG - chr2_3:39077832-39077851 None:intergenic 20.0%
!!! AATGTACTGATTTTTTTACT+AGG - chr2_3:39077833-39077852 None:intergenic 20.0%
!!! TTGTGTAATTGGATATTTTA+TGG - chr2_3:39077944-39077963 None:intergenic 20.0%
!! ATGGTATAAAAATAACCAAA+AGG + chr2_3:39077980-39077999 Msa0290950:intron 20.0%
!!! CAAAAATTTGTTCAAGAATT+TGG - chr2_3:39078009-39078028 None:intergenic 20.0%
!! AATGAATATTCGATCAAAAT+TGG - chr2_3:39078420-39078439 None:intergenic 20.0%
!! AATCTAAATTGAAAATGTCT+TGG + chr2_3:39078478-39078497 Msa0290950:intron 20.0%
!!! ATTTCAAATATTGGTTGATT+CGG + chr2_3:39078793-39078812 Msa0290950:CDS 20.0%
!! TTAGGGTTATATAAAAAAGA+CGG + chr2_3:39079098-39079117 Msa0290950:three_prime_UTR 20.0%
!!! ACTAAATACATATGACTTTT+TGG + chr2_3:39079283-39079302 Msa0290950:three_prime_UTR 20.0%
!! TATAGATATATTGTCTTAGA+AGG - chr2_3:39079361-39079380 None:intergenic 20.0%
! AGAAAAAGAAATAGAGTGAA+CGG - chr2_3:39072820-39072839 None:intergenic 25.0%
! AAGGTAGTAGATTGTTTAAA+GGG - chr2_3:39072908-39072927 None:intergenic 25.0%
! AAAGGTAGTAGATTGTTTAA+AGG - chr2_3:39072909-39072928 None:intergenic 25.0%
! TGAATATGAAAAAAGAAGGA+AGG - chr2_3:39073022-39073041 None:intergenic 25.0%
! GAAAAAATGTAGATCTACTA+TGG - chr2_3:39073087-39073106 None:intergenic 25.0%
! CAGAAAGAAAGAAAAAAAGA+TGG - chr2_3:39073339-39073358 None:intergenic 25.0%
!!! ATTAATGTGTCACTTCAAAA+AGG - chr2_3:39073583-39073602 None:intergenic 25.0%
!! TCTTTTGTTAGATCCTTAAA+TGG - chr2_3:39073666-39073685 None:intergenic 25.0%
!!! ATTTTGACTTTATCTTTGCA+AGG + chr2_3:39073964-39073983 Msa0290950:intron 25.0%
!!! TTTTGACTTTATCTTTGCAA+GGG + chr2_3:39073965-39073984 Msa0290950:intron 25.0%
! AAAACATGTGAATTTGACTA+AGG - chr2_3:39074161-39074180 None:intergenic 25.0%
! GATTGAAAACAATAAGCATT+TGG + chr2_3:39074339-39074358 Msa0290950:intron 25.0%
!!! TTATGTGGTTTTGTTTGTTT+AGG + chr2_3:39074761-39074780 Msa0290950:intron 25.0%
!!! TTTTTGGTTGAAAAATGAAG+AGG + chr2_3:39074940-39074959 Msa0290950:intron 25.0%
! ATCGAAGCCTATATATTTAT+GGG + chr2_3:39075347-39075366 Msa0290950:intron 25.0%
! TATGAGATTGAAATGAACAA+TGG + chr2_3:39075383-39075402 Msa0290950:intron 25.0%
!! GATTGATGCGATATTAATTT+TGG - chr2_3:39075426-39075445 None:intergenic 25.0%
! GATAGAGATAGAATAACAAT+AGG - chr2_3:39075573-39075592 None:intergenic 25.0%
!! GTGTTAATTTTCAGATTGAT+AGG + chr2_3:39075646-39075665 Msa0290950:intron 25.0%
! TTAATTCAAGAAATGCCAAA+TGG + chr2_3:39076664-39076683 Msa0290950:CDS 25.0%
!!! CTTGATTATTTTTCTCTATG+TGG + chr2_3:39076755-39076774 Msa0290950:intron 25.0%
!!! TTTTTTCTTCTTCCTTTTGA+TGG + chr2_3:39077076-39077095 Msa0290950:intron 25.0%
! TCATGAAAAATTCCATCAAA+AGG - chr2_3:39077091-39077110 None:intergenic 25.0%
!! AATTCAAAAACTCTTTTTGG+TGG - chr2_3:39077359-39077378 None:intergenic 25.0%
! TTGCATTATTGTGTTATCAT+AGG + chr2_3:39077481-39077500 Msa0290950:intron 25.0%
! AAGCAATTGATATAAGATGA+TGG - chr2_3:39077636-39077655 None:intergenic 25.0%
! TATAACGGTTTGATCAAAAT+TGG + chr2_3:39078335-39078354 Msa0290950:intron 25.0%
! AATATTCGATCAAAATTGGA+CGG - chr2_3:39078416-39078435 None:intergenic 25.0%
! GTTGCATTTACTATTATCTA+AGG - chr2_3:39079210-39079229 None:intergenic 25.0%
! AACCTTAAAGAAGGATAAAA+CGG - chr2_3:39079525-39079544 None:intergenic 25.0%
! ACATTTCAAAACCTTAAAGA+AGG - chr2_3:39079534-39079553 None:intergenic 25.0%
!!! AGGTTTTTTTGAGGAAGTTA+TGG - chr2_3:39073002-39073021 None:intergenic 30.0%
!!! AAAGAAGGAAGGTTTTTTTG+AGG - chr2_3:39073011-39073030 None:intergenic 30.0%
AGTAACATGCATTCAATGAT+CGG + chr2_3:39073772-39073791 Msa0290950:five_prime_UTR 30.0%
AAAAAGAAGAAGATTCACCT+GGG - chr2_3:39073851-39073870 None:intergenic 30.0%
AAAAAAGAAGAAGATTCACC+TGG - chr2_3:39073852-39073871 None:intergenic 30.0%
GACTGGTAAAATACAAAGAA+AGG - chr2_3:39074054-39074073 None:intergenic 30.0%
AAAAGTGAAAAGGAATAACG+CGG - chr2_3:39074103-39074122 None:intergenic 30.0%
!! TTGTTTTGTGTCATGTCAAA+TGG - chr2_3:39074434-39074453 None:intergenic 30.0%
TGTCGAATAATTCATCTTCA+CGG - chr2_3:39074490-39074509 None:intergenic 30.0%
AACCAAAACTTCACTTGTAA+TGG - chr2_3:39074856-39074875 None:intergenic 30.0%
TTCTCTAAACCTCATGTTAT+CGG - chr2_3:39075055-39075074 None:intergenic 30.0%
CAGAAATTACACCAAGTTTA+TGG + chr2_3:39075205-39075224 Msa0290950:intron 30.0%
!!! ATGTATGTTTTAACTGCGTT+TGG - chr2_3:39075272-39075291 None:intergenic 30.0%
TAAAACATACATCAAGGTCT+TGG + chr2_3:39075280-39075299 Msa0290950:intron 30.0%
GATCGAAGCCTATATATTTA+TGG + chr2_3:39075346-39075365 Msa0290950:intron 30.0%
TCAAACGCCCATAAATATAT+AGG - chr2_3:39075357-39075376 None:intergenic 30.0%
GATCTTCTTAGATCAATAAG+TGG + chr2_3:39075819-39075838 Msa0290950:CDS 30.0%
ATATTCCTCTTCATTGAGTA+TGG - chr2_3:39075961-39075980 None:intergenic 30.0%
TCAATGAAGAGGAATATGTT+AGG + chr2_3:39075964-39075983 Msa0290950:CDS 30.0%
!!! TGACACTATTTTTGTTCTTG+TGG + chr2_3:39076225-39076244 Msa0290950:intron 30.0%
TTGTGGTTTATAAGAACCAA+TGG + chr2_3:39076242-39076261 Msa0290950:intron 30.0%
ACAAAATAACTCTCTCTAGT+TGG - chr2_3:39076535-39076554 None:intergenic 30.0%
AAAATTTCCCCTAGGTTATA+TGG + chr2_3:39076803-39076822 Msa0290950:intron 30.0%
AAATTTCCCCTAGGTTATAT+GGG + chr2_3:39076804-39076823 Msa0290950:intron 30.0%
!! GAGTAGTGTTTTTGTAGTAT+TGG - chr2_3:39076998-39077017 None:intergenic 30.0%
TTAGTGATAACAAACCAAGA+TGG + chr2_3:39077131-39077150 Msa0290950:intron 30.0%
TAGTGATAACAAACCAAGAT+GGG + chr2_3:39077132-39077151 Msa0290950:intron 30.0%
ATAGAGTCTTCATTAAAAGG+AGG - chr2_3:39077713-39077732 None:intergenic 30.0%
TTCGGCTCAAATATCTATAA+CGG + chr2_3:39078320-39078339 Msa0290950:intron 30.0%
! TGGACTTTTCAATTCAAACT+CGG + chr2_3:39078355-39078374 Msa0290950:intron 30.0%
GAATTATGCATTCACACATT+TGG - chr2_3:39078449-39078468 None:intergenic 30.0%
! GTAATATCAACATGTTGCTT+TGG - chr2_3:39078565-39078584 None:intergenic 30.0%
GATATTACAAGAGAGTTGTA+CGG + chr2_3:39078577-39078596 Msa0290950:CDS 30.0%
GACTGTTGCATTTCAAATAT+TGG + chr2_3:39078784-39078803 Msa0290950:CDS 30.0%
CATCAAGTCATCTAATGTAA+CGG + chr2_3:39078921-39078940 Msa0290950:intron 30.0%
GGCTTATATTCAAGACTATA+TGG + chr2_3:39079304-39079323 Msa0290950:three_prime_UTR 30.0%
AAAGCACAAATGACAATAGA+AGG - chr2_3:39079450-39079469 None:intergenic 30.0%
! ATCCGTTTTATCCTTCTTTA+AGG + chr2_3:39079520-39079539 Msa0290950:three_prime_UTR 30.0%
CTGAAATTGAGTAGACAAAA+TGG - chr2_3:39079567-39079586 None:intergenic 30.0%
AAAGAAATAGAGTGAACGGA+TGG - chr2_3:39072816-39072835 None:intergenic 35.0%
GAAGATGAAGAAGATGAAGA+AGG - chr2_3:39072869-39072888 None:intergenic 35.0%
! GAAAGCTTGATGAGTGTTTT+TGG - chr2_3:39072947-39072966 None:intergenic 35.0%
GTTATGGAAAGTTGGGTATA+TGG - chr2_3:39072986-39073005 None:intergenic 35.0%
TGAGGAAGTTATGGAAAGTT+GGG - chr2_3:39072993-39073012 None:intergenic 35.0%
TTGAGGAAGTTATGGAAAGT+TGG - chr2_3:39072994-39073013 None:intergenic 35.0%
!!! TTTTTTTCCCACTTACCAAG+AGG - chr2_3:39073150-39073169 None:intergenic 35.0%
TTCTAGCAACCCTAACTATA+TGG - chr2_3:39073284-39073303 None:intergenic 35.0%
CATCATCTGAAAGCCATTTA+AGG + chr2_3:39073650-39073669 Msa0290950:five_prime_UTR 35.0%
TGATTGTGAAATATGCAAGC+TGG + chr2_3:39073733-39073752 Msa0290950:five_prime_UTR 35.0%
ATTGAATGCATGTTACTAGC+TGG - chr2_3:39073769-39073788 None:intergenic 35.0%
GGAAGAAACAACAATAACGT+TGG + chr2_3:39073793-39073812 Msa0290950:five_prime_UTR 35.0%
! AACAATAACGTTGGTGTCTT+TGG + chr2_3:39073802-39073821 Msa0290950:five_prime_UTR 35.0%
CAAGTATCCTTCTCGTTATT+CGG + chr2_3:39074074-39074093 Msa0290950:intron 35.0%
!!! GACTAAGGTTGATGTTTTTG+AGG - chr2_3:39074146-39074165 None:intergenic 35.0%
AATGTTCCAGCCAAATCTAA+TGG + chr2_3:39074382-39074401 Msa0290950:exon 35.0%
AATTCATCTTCACGGATTCT+TGG - chr2_3:39074482-39074501 None:intergenic 35.0%
AATCAAGAAGCTGCTAATTC+TGG + chr2_3:39074536-39074555 Msa0290950:CDS 35.0%
! AGCCATTACAAGTGAAGTTT+TGG + chr2_3:39074851-39074870 Msa0290950:CDS 35.0%
GAACAAACGTACTCAAATGA+AGG + chr2_3:39074879-39074898 Msa0290950:CDS 35.0%
AATGCTTCTTGTCCTAATTG+TGG + chr2_3:39075084-39075103 Msa0290950:CDS 35.0%
GAATGTATACCTCTTCTCTA+AGG - chr2_3:39075173-39075192 None:intergenic 35.0%
TATCAATCGCACCATAAACT+TGG - chr2_3:39075219-39075238 None:intergenic 35.0%
CGCAGTTAAAACATACATCA+AGG + chr2_3:39075274-39075293 Msa0290950:intron 35.0%
!! TGCGATATTAATTTTGGTCG+AGG - chr2_3:39075420-39075439 None:intergenic 35.0%
! ATTGGTTTATCAGCTTCAGT+AGG - chr2_3:39075846-39075865 None:intergenic 35.0%
ACTGCTAGCTCAATTATCAT+TGG - chr2_3:39075864-39075883 None:intergenic 35.0%
! TATGTTAGGTCTTTTCCTAG+AGG + chr2_3:39075978-39075997 Msa0290950:CDS 35.0%
TAACCTTGTTGAGATTCTCA+TGG + chr2_3:39076073-39076092 Msa0290950:CDS 35.0%
!! CTAGAGAGAGTTATTTTGTG+AGG + chr2_3:39076536-39076555 Msa0290950:CDS 35.0%
TATTGTAAGCAACATGCTGA+TGG + chr2_3:39076559-39076578 Msa0290950:CDS 35.0%
TCTTGAATTAAGCAACCAGA+AGG - chr2_3:39076655-39076674 None:intergenic 35.0%
ATAACCTTTGAGTAGCCATT+TGG - chr2_3:39076682-39076701 None:intergenic 35.0%
TCTTTCACATTGTCGATCTA+GGG - chr2_3:39076926-39076945 None:intergenic 35.0%
! AACACTACTCTTTCTCGTTT+TGG + chr2_3:39077008-39077027 Msa0290950:intron 35.0%
!! TAAGTGCTGCAACTTCTTTT+TGG + chr2_3:39077324-39077343 Msa0290950:CDS 35.0%
AGATGAAAACTCAAGAAGTG+AGG + chr2_3:39077385-39077404 Msa0290950:CDS 35.0%
TCTTCATTAAAAGGAGGAGT+CGG - chr2_3:39077707-39077726 None:intergenic 35.0%
!! TCAAGAATTTGGTAGCCTTT+TGG - chr2_3:39077998-39078017 None:intergenic 35.0%
! TTTTCAACTCTCGAAAACAG+TGG + chr2_3:39078114-39078133 Msa0290950:intron 35.0%
TTTCAACTCTCGAAAACAGT+GGG + chr2_3:39078115-39078134 Msa0290950:intron 35.0%
!! TAGCAATATGTGCCATTTCT+TGG - chr2_3:39078166-39078185 None:intergenic 35.0%
GAAATGGCACATATTGCTAA+TGG + chr2_3:39078167-39078186 Msa0290950:CDS 35.0%
ATTGCTAATGGAAGAGATAC+TGG + chr2_3:39078179-39078198 Msa0290950:CDS 35.0%
TGCAAATTCCCACATTCATT+CGG + chr2_3:39078302-39078321 Msa0290950:intron 35.0%
TATTTGAGCCGAATGAATGT+GGG - chr2_3:39078313-39078332 None:intergenic 35.0%
ATATTTGAGCCGAATGAATG+TGG - chr2_3:39078314-39078333 None:intergenic 35.0%
TTCATTGCAACTATGTCTAC+AGG - chr2_3:39078632-39078651 None:intergenic 35.0%
AGACATAGTTGCAATGAATG+TGG + chr2_3:39078634-39078653 Msa0290950:CDS 35.0%
!! GCAATGAATGTGGTTCTAAA+TGG + chr2_3:39078644-39078663 Msa0290950:CDS 35.0%
!! ATGAATGTGGTTCTAAATGG+AGG + chr2_3:39078647-39078666 Msa0290950:CDS 35.0%
!! TGAATGTGGTTCTAAATGGA+GGG + chr2_3:39078648-39078667 Msa0290950:CDS 35.0%
!! GATTTGCTATACTTCCAGAT+GGG + chr2_3:39078702-39078721 Msa0290950:CDS 35.0%
TTATTGCTTGTACTGTTGAG+AGG + chr2_3:39078864-39078883 Msa0290950:CDS 35.0%
TTGTACTGTTGAGAGGATTA+AGG + chr2_3:39078871-39078890 Msa0290950:CDS 35.0%
CGTTACATTAGATGACTTGA+TGG - chr2_3:39078923-39078942 None:intergenic 35.0%
TCTTGTGCAGTTAAGAAGAA+GGG + chr2_3:39079029-39079048 Msa0290950:intron 35.0%
!!! AAGGGAAAAGCATTGCATTT+TGG + chr2_3:39079054-39079073 Msa0290950:three_prime_UTR 35.0%
GAAATTAACCACTGTTTGCA+TGG - chr2_3:39079490-39079509 None:intergenic 35.0%
TGAGAGGACAAAGGAATTGA+AGG - chr2_3:39072846-39072865 None:intergenic 40.0%
AAGAAGATGAAGAAGGTGAG+AGG - chr2_3:39072862-39072881 None:intergenic 40.0%
! TGGACGGTCTAGCTTAAAAA+AGG - chr2_3:39072927-39072946 None:intergenic 40.0%
!!! GCTTGATGAGTGTTTTTGGA+CGG - chr2_3:39072943-39072962 None:intergenic 40.0%
AGAGAGATAGAAGCTAGAAG+AGG - chr2_3:39073112-39073131 None:intergenic 40.0%
TGTCTCCGTCCATATAGTTA+GGG + chr2_3:39073272-39073291 Msa0290950:intron 40.0%
AGCAACCCTAACTATATGGA+CGG - chr2_3:39073280-39073299 None:intergenic 40.0%
! GATTCTTCTGTCAGCTTTAG+CGG - chr2_3:39073618-39073637 None:intergenic 40.0%
CGAATAACGAGAAGGATACT+TGG - chr2_3:39074076-39074095 None:intergenic 40.0%
TGTCCAGCTTCCATTAGATT+TGG - chr2_3:39074395-39074414 None:intergenic 40.0%
TTCGACAGTGCTACAAAATC+TGG + chr2_3:39074503-39074522 Msa0290950:CDS 40.0%
TAACGTTTCTTCTTAGCACG+AGG - chr2_3:39074575-39074594 None:intergenic 40.0%
ACAGCATCAGATCCAAGAAA+TGG + chr2_3:39074607-39074626 Msa0290950:CDS 40.0%
CTTCTTACGCTTCCATTTCT+TGG - chr2_3:39074622-39074641 None:intergenic 40.0%
!!! TTTTGGTTTGCAGACTCAAC+AGG + chr2_3:39074981-39075000 Msa0290950:intron 40.0%
ATCAAACGACATTTCTCCGA+TGG - chr2_3:39075121-39075140 None:intergenic 40.0%
CGTTTGATGAACATCACTTG+AGG + chr2_3:39075133-39075152 Msa0290950:CDS 40.0%
! TGTATACCTCTTCTCTAAGG+CGG - chr2_3:39075170-39075189 None:intergenic 40.0%
TATGGAGGAACTCATTGGAA+TGG + chr2_3:39075890-39075909 Msa0290950:CDS 40.0%
ACTCATTGGAATGGCACAAA+TGG + chr2_3:39075899-39075918 Msa0290950:CDS 40.0%
CTCATTGGAATGGCACAAAT+GGG + chr2_3:39075900-39075919 Msa0290950:CDS 40.0%
AGGTTCCATACTCAATGAAG+AGG + chr2_3:39075953-39075972 Msa0290950:CDS 40.0%
! AGGTCTTTTCCTAGAGGAAT+TGG + chr2_3:39075984-39076003 Msa0290950:CDS 40.0%
!! CACTTAAAACCAGCTGGTTT+TGG - chr2_3:39076011-39076030 None:intergenic 40.0%
CATCCATGAGAATCTCAACA+AGG - chr2_3:39076079-39076098 None:intergenic 40.0%
TGTTGAGATTCTCATGGATG+TGG + chr2_3:39076079-39076098 Msa0290950:CDS 40.0%
CTACAATGGTGCATTACAAG+TGG + chr2_3:39076336-39076355 Msa0290950:CDS 40.0%
AATGCCAAATGGCTACTCAA+AGG + chr2_3:39076675-39076694 Msa0290950:CDS 40.0%
TGCTCAACCCATATAACCTA+GGG - chr2_3:39076814-39076833 None:intergenic 40.0%
ATGCTCAACCCATATAACCT+AGG - chr2_3:39076815-39076834 None:intergenic 40.0%
CATGTTGAAGTGGATGATAG+AGG + chr2_3:39076832-39076851 Msa0290950:CDS 40.0%
!! TACAAGCAGCTTGTTAGTTC+TGG + chr2_3:39076868-39076887 Msa0290950:CDS 40.0%
!! GTTAGTTCTGGACATGCATT+TGG + chr2_3:39076880-39076899 Msa0290950:CDS 40.0%
!! ATGCATTTGGTGCAAAACGT+TGG + chr2_3:39076893-39076912 Msa0290950:CDS 40.0%
GTCTTTCACATTGTCGATCT+AGG - chr2_3:39076927-39076946 None:intergenic 40.0%
ACATACTCTTTCTCCCATCT+TGG - chr2_3:39077148-39077167 None:intergenic 40.0%
!! AAAACTCTTTTTGGTGGCAC+TGG - chr2_3:39077353-39077372 None:intergenic 40.0%
!! GAATGTGGTTCTAAATGGAG+GGG + chr2_3:39078649-39078668 Msa0290950:CDS 40.0%
!! GGAAGAAGTGCTACATAATC+TGG - chr2_3:39078677-39078696 None:intergenic 40.0%
TATGTAGCACTTCTTCCATC+TGG + chr2_3:39078680-39078699 Msa0290950:CDS 40.0%
! GGAAGTATAGCAAATCCAGA+TGG - chr2_3:39078698-39078717 None:intergenic 40.0%
!! GGATTTGCTATACTTCCAGA+TGG + chr2_3:39078701-39078720 Msa0290950:CDS 40.0%
!! ATTGGTTGATTCGGTTCCAA+CGG + chr2_3:39078802-39078821 Msa0290950:CDS 40.0%
GGCAAAACTTTCTCTTGGTT+CGG + chr2_3:39078823-39078842 Msa0290950:CDS 40.0%
AGGATTAAGGCTTCTTTGTC+TGG + chr2_3:39078884-39078903 Msa0290950:CDS 40.0%
CTCTTGTGCAGTTAAGAAGA+AGG + chr2_3:39079028-39079047 Msa0290950:intron 40.0%
CAGTTAAGAAGAAGGGCAAA+GGG + chr2_3:39079036-39079055 Msa0290950:intron 40.0%
! GCATTGCATTTTGGATGATG+AGG + chr2_3:39079063-39079082 Msa0290950:three_prime_UTR 40.0%
! TTGCATTTTGGATGATGAGG+AGG + chr2_3:39079066-39079085 Msa0290950:three_prime_UTR 40.0%
TCTGAGAAGGAAATCTTGCA+AGG - chr2_3:39079142-39079161 None:intergenic 40.0%
GACAATAGAAGGAACATGAG+AGG - chr2_3:39079439-39079458 None:intergenic 40.0%
ACGGATGGAGAGGAAAATTG+TGG - chr2_3:39072801-39072820 None:intergenic 45.0%
AATAGAGTGAACGGATGGAG+AGG - chr2_3:39072811-39072830 None:intergenic 45.0%
TGAAGAAGGTGAGAGGACAA+AGG - chr2_3:39072855-39072874 None:intergenic 45.0%
ATAGCAACTACCCTTCCTCT+TGG + chr2_3:39073132-39073151 Msa0290950:five_prime_UTR 45.0%
TACCCTTCCTCTTGGTAAGT+GGG + chr2_3:39073140-39073159 Msa0290950:intron 45.0%
TTCCCACTTACCAAGAGGAA+GGG - chr2_3:39073145-39073164 None:intergenic 45.0%
TTTCCCACTTACCAAGAGGA+AGG - chr2_3:39073146-39073165 None:intergenic 45.0%
CTGTCTCCGTCCATATAGTT+AGG + chr2_3:39073271-39073290 Msa0290950:intron 45.0%
TTCATCTCTCTCTCTATCCC+AGG + chr2_3:39073831-39073850 Msa0290950:five_prime_UTR 45.0%
AACGAGAAGGATACTTGGAC+TGG - chr2_3:39074071-39074090 None:intergenic 45.0%
CAGCTTCCATTAGATTTGGC+TGG - chr2_3:39074391-39074410 None:intergenic 45.0%
CAGCCAAATCTAATGGAAGC+TGG + chr2_3:39074389-39074408 Msa0290950:CDS 45.0%
GGATCTGATGCTGTGTATGA+CGG - chr2_3:39074601-39074620 None:intergenic 45.0%
CCTTCCTTTGCTTGTCATCA+GGG - chr2_3:39074807-39074826 None:intergenic 45.0%
TCCTTCCTTTGCTTGTCATC+AGG - chr2_3:39074808-39074827 None:intergenic 45.0%
AAGGAACTGAGCAGAGAGTT+AGG + chr2_3:39074823-39074842 Msa0290950:CDS 45.0%
AGGAACTGAGCAGAGAGTTA+GGG + chr2_3:39074824-39074843 Msa0290950:CDS 45.0%
! AACTTCGTGCCGATAACATG+AGG + chr2_3:39075043-39075062 Msa0290950:CDS 45.0%
GCTTCTTGTCCTAATTGTGG+TGG + chr2_3:39075087-39075106 Msa0290950:CDS 45.0%
AAATTCCCGCCTTAGAGAAG+AGG + chr2_3:39075161-39075180 Msa0290950:CDS 45.0%
!! GTATACCTCTTCTCTAAGGC+GGG - chr2_3:39075169-39075188 None:intergenic 45.0%
TACATATCTCCTCCCATTCC+TGG - chr2_3:39075789-39075808 None:intergenic 45.0%
GGAATGGGAGGAGATATGTA+TGG + chr2_3:39075789-39075808 Msa0290950:CDS 45.0%
CACAAATGGGTGATCCACTT+TGG + chr2_3:39075913-39075932 Msa0290950:CDS 45.0%
TCAAGTGTAGGCAACCAAAG+TGG - chr2_3:39075930-39075949 None:intergenic 45.0%
CTTTGGTTGCCTACACTTGA+AGG + chr2_3:39075930-39075949 Msa0290950:CDS 45.0%
ATGGAACCTCCTTCAAGTGT+AGG - chr2_3:39075942-39075961 None:intergenic 45.0%
!!! GGTTTTGGACCAATTCCTCT+AGG - chr2_3:39075996-39076015 None:intergenic 45.0%
GCTTCACACTTAAAACCAGC+TGG - chr2_3:39076017-39076036 None:intergenic 45.0%
CAGAGAAAACTGTGGACCAT+TGG - chr2_3:39076261-39076280 None:intergenic 45.0%
! CAATGGTCCACAGTTTTCTC+TGG + chr2_3:39076259-39076278 Msa0290950:CDS 45.0%
GACAATGCCAGAGAAAACTG+TGG - chr2_3:39076269-39076288 None:intergenic 45.0%
TGTCTCAAGAGCAATGACAC+TGG + chr2_3:39076285-39076304 Msa0290950:CDS 45.0%
!! ACACTGGAAGTGCTATCAAC+TGG + chr2_3:39076301-39076320 Msa0290950:CDS 45.0%
!! CACTGGAAGTGCTATCAACT+GGG + chr2_3:39076302-39076321 Msa0290950:CDS 45.0%
!! ACTGGAAGTGCTATCAACTG+GGG + chr2_3:39076303-39076322 Msa0290950:CDS 45.0%
AGCAACATGCTGATGGAACT+TGG + chr2_3:39076566-39076585 Msa0290950:CDS 45.0%
GCAACATGCTGATGGAACTT+GGG + chr2_3:39076567-39076586 Msa0290950:CDS 45.0%
!! GGCAGTAGTGGATGTTTCTT+TGG + chr2_3:39076588-39076607 Msa0290950:CDS 45.0%
GCTCAACCCATATAACCTAG+GGG - chr2_3:39076813-39076832 None:intergenic 45.0%
! ATGGGTTGAGCATGTTGAAG+TGG + chr2_3:39076822-39076841 Msa0290950:CDS 45.0%
!! TGAAAGACTTGCTAGTGCCA+TGG + chr2_3:39076939-39076958 Msa0290950:CDS 45.0%
! TGTGGGAATGTTTGTTGCCA+TGG - chr2_3:39076959-39076978 None:intergenic 45.0%
AACATTCCCACAGTCGATGT+TGG + chr2_3:39076967-39076986 Msa0290950:CDS 45.0%
ATGTGCATAAGCTTCTGTGC+TGG + chr2_3:39077185-39077204 Msa0290950:CDS 45.0%
! CACAGGAGCTGATGATGTAA+GGG + chr2_3:39077250-39077269 Msa0290950:CDS 45.0%
TGGGTCATCTACACTCTTAC+GGG - chr2_3:39077282-39077301 None:intergenic 45.0%
CTGGGTCATCTACACTCTTA+CGG - chr2_3:39077283-39077302 None:intergenic 45.0%
AGAAGTGAGGTAAGCAAGCA+AGG + chr2_3:39077398-39077417 Msa0290950:intron 45.0%
CAGTGGGATATCCTTTCCAA+TGG + chr2_3:39078131-39078150 Msa0290950:intron 45.0%
TGGGATATCCTTTCCAATGG+TGG + chr2_3:39078134-39078153 Msa0290950:CDS 45.0%
TTCTTGGACAACTCCACCAT+TGG - chr2_3:39078150-39078169 None:intergenic 45.0%
TGGTGGAGTTGTCCAAGAAA+TGG + chr2_3:39078151-39078170 Msa0290950:CDS 45.0%
GAGAGTTGTACGGATTCAAC+AGG + chr2_3:39078587-39078606 Msa0290950:CDS 45.0%
! CCAAGAGAAAGTTTTGCCGT+TGG - chr2_3:39078821-39078840 None:intergenic 45.0%
CCAACGGCAAAACTTTCTCT+TGG + chr2_3:39078818-39078837 Msa0290950:CDS 45.0%
!! TTCTCTTGGTTCGGTTGCTA+CGG + chr2_3:39078832-39078851 Msa0290950:CDS 45.0%
GCAGTTAAGAAGAAGGGCAA+AGG + chr2_3:39079035-39079054 Msa0290950:intron 45.0%
ATGAGGAGGCAAGAGAACTT+AGG + chr2_3:39079080-39079099 Msa0290950:three_prime_UTR 45.0%
TGAGGAGGCAAGAGAACTTA+GGG + chr2_3:39079081-39079100 Msa0290950:three_prime_UTR 45.0%
TAATCCTCTCAGTCCTCAGT+TGG - chr2_3:39079169-39079188 None:intergenic 45.0%
ACTGAGGACTGAGAGGATTA+AGG + chr2_3:39079169-39079188 Msa0290950:three_prime_UTR 45.0%
GGACTGAGAGGATTAAGGTT+CGG + chr2_3:39079174-39079193 Msa0290950:three_prime_UTR 45.0%
GACTGAGAGGATTAAGGTTC+GGG + chr2_3:39079175-39079194 Msa0290950:three_prime_UTR 45.0%
TTGCACTACCATGCAAACAG+TGG + chr2_3:39079479-39079498 Msa0290950:three_prime_UTR 45.0%
!!! TTATTTTTTTGTAAATAAAT+TGG - chr2_3:39074203-39074222 None:intergenic 5.0%
!! AAAAGTAAATAAATAAAAAA+TGG - chr2_3:39074669-39074688 None:intergenic 5.0%
!! ATTAAATATATTAGTAAATA+TGG - chr2_3:39078249-39078268 None:intergenic 5.0%
!! TTAATTAAAAAAACTAATTA+GGG - chr2_3:39078955-39078974 None:intergenic 5.0%
!! ATTAATTAAAAAAACTAATT+AGG - chr2_3:39078956-39078975 None:intergenic 5.0%
!!! CTTTTTATTTATATTTAAAA+CGG - chr2_3:39079238-39079257 None:intergenic 5.0%
CTACCCTTCCTCTTGGTAAG+TGG + chr2_3:39073139-39073158 Msa0290950:intron 50.0%
GCGGTTTCCGAATAACGAGA+AGG - chr2_3:39074084-39074103 None:intergenic 50.0%
CTTTGCTTGTCATCAGGGTG+TGG - chr2_3:39074802-39074821 None:intergenic 50.0%
CACACCCTGATGACAAGCAA+AGG + chr2_3:39074800-39074819 Msa0290950:CDS 50.0%
CCCTGATGACAAGCAAAGGA+AGG + chr2_3:39074804-39074823 Msa0290950:CDS 50.0%
GTTTGCAGACTCAACAGGAG+AGG + chr2_3:39074986-39075005 Msa0290950:intron 50.0%
GCAGTTGGTCCACCACAATT+AGG - chr2_3:39075099-39075118 None:intergenic 50.0%
GACATTTCTCCGATGGCAGT+TGG - chr2_3:39075114-39075133 None:intergenic 50.0%
GATCCCCTACAACAGTTGCA+CGG + chr2_3:39075302-39075321 Msa0290950:intron 50.0%
TGCACCGTGCAACTGTTGTA+GGG - chr2_3:39075309-39075328 None:intergenic 50.0%
GGCTTCGATCCCCTACATTA+GGG - chr2_3:39075336-39075355 None:intergenic 50.0%
AGGCTTCGATCCCCTACATT+AGG - chr2_3:39075337-39075356 None:intergenic 50.0%
TCCTACGTACTTGGCAGCAA+TGG - chr2_3:39075679-39075698 None:intergenic 50.0%
!! CACTGGCTTTCCTACGTACT+TGG - chr2_3:39075688-39075707 None:intergenic 50.0%
CAAGTACGTAGGAAAGCCAG+TGG + chr2_3:39075686-39075705 Msa0290950:CDS 50.0%
!! AGTAGTGGATAGCTCACCAC+TGG - chr2_3:39075705-39075724 None:intergenic 50.0%
TCCACTACTCTCCCCTTCAT+CGG + chr2_3:39075716-39075735 Msa0290950:CDS 50.0%
!! CACCAATGCCGAGTTCTAGA+GGG - chr2_3:39075752-39075771 None:intergenic 50.0%
!! GAACTCGGCATTGGTGGTTT+CGG + chr2_3:39075756-39075775 Msa0290950:CDS 50.0%
TTTCGGAGGACAACCAGGAA+TGG + chr2_3:39075773-39075792 Msa0290950:CDS 50.0%
TTCGGAGGACAACCAGGAAT+GGG + chr2_3:39075774-39075793 Msa0290950:CDS 50.0%
GGAGGAGATATGTATGGAGC+TGG + chr2_3:39075795-39075814 Msa0290950:CDS 50.0%
TGAGCTAGCAGTTGCTGCTA+TGG + chr2_3:39075872-39075891 Msa0290950:CDS 50.0%
GCTGCTATGGAGGAACTCAT+TGG + chr2_3:39075885-39075904 Msa0290950:CDS 50.0%
TGGTTGCCTACACTTGAAGG+AGG + chr2_3:39075933-39075952 Msa0290950:CDS 50.0%
GGAATTGGTCCAAAACCAGC+TGG + chr2_3:39075999-39076018 Msa0290950:CDS 50.0%
CTAGTTGGCACAAGTGGTGA+AGG - chr2_3:39076520-39076539 None:intergenic 50.0%
CTCTCTCTAGTTGGCACAAG+TGG - chr2_3:39076526-39076545 None:intergenic 50.0%
TGATGGAACTTGGGCAGTAG+TGG + chr2_3:39076576-39076595 Msa0290950:CDS 50.0%
TGGATCTGGCAGAAGGACTA+GGG - chr2_3:39076624-39076643 None:intergenic 50.0%
CTTCTTCTGGATCTGGCAGA+AGG - chr2_3:39076631-39076650 None:intergenic 50.0%
CTTCTGCCAGATCCAGAAGA+AGG + chr2_3:39076629-39076648 Msa0290950:CDS 50.0%
AGAAGGCCTTCTTCTGGATC+TGG - chr2_3:39076638-39076657 None:intergenic 50.0%
AGATCCAGAAGAAGGCCTTC+TGG + chr2_3:39076637-39076656 Msa0290950:CDS 50.0%
ATTCCCACAGTCGATGTTGG+CGG + chr2_3:39076970-39076989 Msa0290950:CDS 50.0%
CACACGTGGACAACACTTTC+AGG + chr2_3:39077227-39077246 Msa0290950:CDS 50.0%
TGGACAACACTTTCAGGCAC+AGG + chr2_3:39077233-39077252 Msa0290950:CDS 50.0%
! GCACAGGAGCTGATGATGTA+AGG + chr2_3:39077249-39077268 Msa0290950:CDS 50.0%
! CGTAAGAGTGTAGATGACCC+AGG + chr2_3:39077281-39077300 Msa0290950:CDS 50.0%
GCACTTAGAACAATGCCAGC+TGG - chr2_3:39077311-39077330 None:intergenic 50.0%
GGACAACTCCACCATTGGAA+AGG - chr2_3:39078145-39078164 None:intergenic 50.0%
! TTTGGTGTGGTTGTCCCATC+TGG - chr2_3:39078719-39078738 None:intergenic 50.0%
GATGGGACAACCACACCAAA+TGG + chr2_3:39078719-39078738 Msa0290950:CDS 50.0%
ACAACCACACCAAATGGAGG+AGG + chr2_3:39078725-39078744 Msa0290950:CDS 50.0%
! AACACCTCCTCCATTTGGTG+TGG - chr2_3:39078732-39078751 None:intergenic 50.0%
! ACACCAAATGGAGGAGGTGT+TGG + chr2_3:39078731-39078750 Msa0290950:CDS 50.0%
TCACCAACACCTCCTCCATT+TGG - chr2_3:39078737-39078756 None:intergenic 50.0%
!! GGTGTTGGTGAAACTGGACA+TGG + chr2_3:39078746-39078765 Msa0290950:CDS 50.0%
! GTTGGTGAAACTGGACATGG+TGG + chr2_3:39078749-39078768 Msa0290950:CDS 50.0%
!! CTCAGTTGGTCGTTCTGAGA+AGG - chr2_3:39079155-39079174 None:intergenic 50.0%
CTTCTCAGAACGACCAACTG+AGG + chr2_3:39079153-39079172 Msa0290950:three_prime_UTR 50.0%
!! TGTGGTGGACCAACTGCCAT+CGG + chr2_3:39075102-39075121 Msa0290950:CDS 55.0%
GCACCGTGCAACTGTTGTAG+GGG - chr2_3:39075308-39075327 None:intergenic 55.0%
CTGCACCGTGCAACTGTTGT+AGG - chr2_3:39075310-39075329 None:intergenic 55.0%
GGTGCAGCGACCCTAATGTA+GGG + chr2_3:39075323-39075342 Msa0290950:intron 55.0%
GTGCAGCGACCCTAATGTAG+GGG + chr2_3:39075324-39075343 Msa0290950:intron 55.0%
GCCATTGCTGCCAAGTACGT+AGG + chr2_3:39075675-39075694 Msa0290950:CDS 55.0%
ACCGATGAAGGGGAGAGTAG+TGG - chr2_3:39075720-39075739 None:intergenic 55.0%
! CCACCAATGCCGAGTTCTAG+AGG - chr2_3:39075753-39075772 None:intergenic 55.0%
!! CCTCTAGAACTCGGCATTGG+TGG + chr2_3:39075750-39075769 Msa0290950:CDS 55.0%
GCTAGCAGTTGCTGCTATGG+AGG + chr2_3:39075875-39075894 Msa0290950:CDS 55.0%
!! GGAAGTGCTATCAACTGGGG+TGG + chr2_3:39076306-39076325 Msa0290950:CDS 55.0%
TGCTATCAACTGGGGTGGCA+GGG + chr2_3:39076311-39076330 Msa0290950:CDS 55.0%
CTGGATCTGGCAGAAGGACT+AGG - chr2_3:39076625-39076644 None:intergenic 55.0%
GCAACCAGAAGGCCTTCTTC+TGG - chr2_3:39076644-39076663 None:intergenic 55.0%
! GTACCGCCAACATCGACTGT+GGG - chr2_3:39076976-39076995 None:intergenic 55.0%
! TGTCCACGTGTGTGCTGTTG+AGG - chr2_3:39077219-39077238 None:intergenic 55.0%
!! CAATGCCAGCTGGTCTTCCT+GGG - chr2_3:39077301-39077320 None:intergenic 55.0%
!! ACAATGCCAGCTGGTCTTCC+TGG - chr2_3:39077302-39077321 None:intergenic 55.0%
GGGACAACCACACCAAATGG+AGG + chr2_3:39078722-39078741 Msa0290950:CDS 55.0%
!! GGAGGAGGTGTTGGTGAAAC+TGG + chr2_3:39078740-39078759 Msa0290950:CDS 55.0%
GGTGAAACTGGACATGGTGG+TGG + chr2_3:39078752-39078771 Msa0290950:CDS 55.0%
ACGACCAACTGAGGACTGAG+AGG + chr2_3:39079162-39079181 Msa0290950:three_prime_UTR 55.0%
CGGTGCAGCGACCCTAATGT+AGG + chr2_3:39075322-39075341 Msa0290950:intron 60.0%
GCGAGGAGGAACCGATGAAG+GGG - chr2_3:39075730-39075749 None:intergenic 60.0%
GGCGAGGAGGAACCGATGAA+GGG - chr2_3:39075731-39075750 None:intergenic 60.0%
!! CCTCCTCGCCCTCTAGAACT+CGG + chr2_3:39075741-39075760 Msa0290950:CDS 60.0%
!! ATGCCGAGTTCTAGAGGGCG+AGG - chr2_3:39075747-39075766 None:intergenic 60.0%
!! CGCCCTCTAGAACTCGGCAT+TGG + chr2_3:39075747-39075766 Msa0290950:CDS 60.0%
!! CTCGGCATTGGTGGTTTCGG+AGG + chr2_3:39075759-39075778 Msa0290950:CDS 60.0%
GGTGGTTTCGGAGGACAACC+AGG + chr2_3:39075768-39075787 Msa0290950:CDS 60.0%
GGAGGACAACCAGGAATGGG+AGG + chr2_3:39075777-39075796 Msa0290950:CDS 60.0%
GTGCTATCAACTGGGGTGGC+AGG + chr2_3:39076310-39076329 Msa0290950:CDS 60.0%
GGGGTGGCAGGGAACTACAA+TGG + chr2_3:39076322-39076341 Msa0290950:CDS 60.0%
! GGTACCGCCAACATCGACTG+TGG - chr2_3:39076977-39076996 None:intergenic 60.0%
GTGCCTCAACAGCACACACG+TGG + chr2_3:39077213-39077232 Msa0290950:CDS 60.0%
GATGACCCAGGAAGACCAGC+TGG + chr2_3:39077293-39077312 Msa0290950:CDS 60.0%
GGGCGAGGAGGAACCGATGA+AGG - chr2_3:39075732-39075751 None:intergenic 65.0%
!! CCGAGTTCTAGAGGGCGAGG+AGG - chr2_3:39075744-39075763 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 39072782 39079601 39072782 ID=Msa0290950;Name=Msa0290950
chr2_3 mRNA 39072782 39079601 39072782 ID=Msa0290950-mRNA-1;Parent=Msa0290950;Name=Msa0290950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=677|1|1|1|0.75|0.69|13|580|738
chr2_3 exon 39072782 39073153 39072782 ID=Msa0290950-mRNA-1:exon:12639;Parent=Msa0290950-mRNA-1
chr2_3 exon 39073591 39073852 39073591 ID=Msa0290950-mRNA-1:exon:12640;Parent=Msa0290950-mRNA-1
chr2_3 exon 39074340 39074633 39074340 ID=Msa0290950-mRNA-1:exon:12641;Parent=Msa0290950-mRNA-1
chr2_3 exon 39074783 39074900 39074783 ID=Msa0290950-mRNA-1:exon:12642;Parent=Msa0290950-mRNA-1
chr2_3 exon 39074994 39075182 39074994 ID=Msa0290950-mRNA-1:exon:12643;Parent=Msa0290950-mRNA-1
chr2_3 exon 39075660 39076100 39075660 ID=Msa0290950-mRNA-1:exon:12644;Parent=Msa0290950-mRNA-1
chr2_3 exon 39076256 39076357 39076256 ID=Msa0290950-mRNA-1:exon:12645;Parent=Msa0290950-mRNA-1
chr2_3 exon 39076496 39076696 39076496 ID=Msa0290950-mRNA-1:exon:12646;Parent=Msa0290950-mRNA-1
chr2_3 exon 39076817 39076991 39076817 ID=Msa0290950-mRNA-1:exon:12647;Parent=Msa0290950-mRNA-1
chr2_3 exon 39077135 39077406 39077135 ID=Msa0290950-mRNA-1:exon:12648;Parent=Msa0290950-mRNA-1
chr2_3 exon 39078134 39078229 39078134 ID=Msa0290950-mRNA-1:exon:12649;Parent=Msa0290950-mRNA-1
chr2_3 exon 39078548 39078936 39078548 ID=Msa0290950-mRNA-1:exon:12650;Parent=Msa0290950-mRNA-1
chr2_3 exon 39079039 39079601 39079039 ID=Msa0290950-mRNA-1:exon:12651;Parent=Msa0290950-mRNA-1
chr2_3 five_prime_UTR 39072782 39073153 39072782 ID=Msa0290950-mRNA-1:five_prime_utr;Parent=Msa0290950-mRNA-1
chr2_3 five_prime_UTR 39073591 39073852 39073591 ID=Msa0290950-mRNA-1:five_prime_utr;Parent=Msa0290950-mRNA-1
chr2_3 five_prime_UTR 39074340 39074382 39074340 ID=Msa0290950-mRNA-1:five_prime_utr;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39074383 39074633 39074383 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39074783 39074900 39074783 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39074994 39075182 39074994 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39075660 39076100 39075660 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39076256 39076357 39076256 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39076496 39076696 39076496 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39076817 39076991 39076817 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39077135 39077406 39077135 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39078134 39078229 39078134 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 CDS 39078548 39078919 39078548 ID=Msa0290950-mRNA-1:cds;Parent=Msa0290950-mRNA-1
chr2_3 three_prime_UTR 39078920 39078936 39078920 ID=Msa0290950-mRNA-1:three_prime_utr;Parent=Msa0290950-mRNA-1
chr2_3 three_prime_UTR 39079039 39079601 39079039 ID=Msa0290950-mRNA-1:three_prime_utr;Parent=Msa0290950-mRNA-1
Gene Sequence

>Msa0290950

ATGTTCCAGCCAAATCTAATGGAAGCTGGACAACATCATCAACTTCTGCCATTTGACATGACACAAAACAACAACAACACTTCAGAAAGTGATGTTCCAAGAATCCGTGAAGATGAATTATTCGACAGTGCTACAAAATCTGGTAACAGTGAAAATCAAGAAGCTGCTAATTCTGGTGAAGATCAAGAGCCTCGTGCTAAGAAGAAACGTTATCACCGTCATACACAGCATCAGATCCAAGAAATGGAAGCGTTTTTTAAGGAATGTCCACACCCTGATGACAAGCAAAGGAAGGAACTGAGCAGAGAGTTAGGGTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAGAACAAACGTACTCAAATGAAGACTCAACAGGAGAGGCACGAGAATACTTCACTTAGAACTGAGAATGAGAAACTTCGTGCCGATAACATGAGGTTTAGAGAAGCTCTAAGTAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCCATCGGAGAAATGTCGTTTGATGAACATCACTTGAGGCTTGAAAATTCCCGCCTTAGAGAAGAGATTGATAGGATATCTGCCATTGCTGCCAAGTACGTAGGAAAGCCAGTGGTGAGCTATCCACTACTCTCCCCTTCATCGGTTCCTCCTCGCCCTCTAGAACTCGGCATTGGTGGTTTCGGAGGACAACCAGGAATGGGAGGAGATATGTATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCTACTGAAGCTGATAAACCAATGATAATTGAGCTAGCAGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCACTTTGGTTGCCTACACTTGAAGGAGGTTCCATACTCAATGAAGAGGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAGTGTGAAGCTTCAAGAGAATCTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTTTTCTCTGGCATTGTCTCAAGAGCAATGACACTGGAAGTGCTATCAACTGGGGTGGCAGGGAACTACAATGGTGCATTACAAGTGATGACAGCAGAACTGCAAGTACCTTCACCACTTGTGCCAACTAGAGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCTGATGGAACTTGGGCAGTAGTGGATGTTTCTTTGGACAATTTACGCCCTAGTCCTTCTGCCAGATCCAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTACTCAAAGGTTATATGGGTTGAGCATGTTGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGTTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCCTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACAAACATTCCCACAGTCGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTCTGTGCTGGAGTGAGTGCCTCAACAGCACACACGTGGACAACACTTTCAGGCACAGGAGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTTCTAAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCAAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTACGGATTCAACAGGATCATTTGTGATATATGCACCTGTAGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGGGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGGACAACCACACCAAATGGAGGAGGTGTTGGTGAAACTGGACATGGTGGTGGATCTCTTTTGACTGTTGCATTTCAAATATTGGTTGATTCGGTTCCAACGGCAAAACTTTCTCTTGGTTCGGTTGCTACGGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA

Protein sequence

>Msa0290950

MFQPNLMEAGQHHQLLPFDMTQNNNNTSESDVPRIREDELFDSATKSGNSENQEAANSGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTSLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENSRLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGMGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLPTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRESSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARSRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTPNGGGVGETGHGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA*