Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835180 | XP_003611587.1 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835180 | sp|Q9FJX3|VDAC2_ARATH | 66.304 | 276 | 93 | 0 | 1 | 276 | 1 | 276 | 4.30e-139 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835180 | G7K2J4 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618020 | Msa0835180 | 0.809672 | 1.685293e-50 | -8.615850e-47 |
| Msa0657060 | Msa0835180 | 0.805789 | 1.126505e-49 | -8.615850e-47 |
| Msa0701040 | Msa0835180 | 0.816866 | 4.433656e-52 | -8.615850e-47 |
| Msa0713900 | Msa0835180 | 0.835112 | 2.028295e-56 | -8.615850e-47 |
| Msa0756160 | Msa0835180 | 0.942806 | 3.740080e-102 | -8.615850e-47 |
| Msa0835180 | Msa1358720 | 0.867582 | 1.230695e-65 | -8.615850e-47 |
| Msa0564920 | Msa0835180 | 0.816069 | 6.687284e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835180 | MtrunA17_Chr5g0401201 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Msa0835180 | MtrunA17_Chr1g0152591 | 56.727 | 275 | 119 | 0 | 2 | 276 | 3 | 277 | 5.82e-111 | 321 |
| Msa0835180 | MtrunA17_Chr6g0452811 | 49.281 | 278 | 139 | 1 | 1 | 276 | 1 | 278 | 3.13e-92 | 274 |
| Msa0835180 | MtrunA17_Chr7g0216561 | 49.818 | 275 | 138 | 0 | 2 | 276 | 3 | 277 | 1.07e-90 | 270 |
| Msa0835180 | MtrunA17_Chr8g0362621 | 41.304 | 276 | 162 | 0 | 1 | 276 | 1 | 276 | 3.04e-76 | 233 |
| Msa0835180 | MtrunA17_Chr4g0072511 | 42.652 | 279 | 157 | 2 | 1 | 276 | 1 | 279 | 2.19e-74 | 228 |
| Msa0835180 | MtrunA17_Chr4g0060181 | 26.148 | 283 | 163 | 5 | 1 | 276 | 1 | 244 | 1.92e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0835180 | AT5G67500.3 | 66.304 | 276 | 93 | 0 | 1 | 276 | 1 | 276 | 4.38e-140 | 395 |
| Msa0835180 | AT5G67500.2 | 60.396 | 303 | 93 | 1 | 1 | 276 | 1 | 303 | 2.69e-134 | 382 |
| Msa0835180 | AT5G67500.1 | 65.918 | 267 | 91 | 0 | 1 | 267 | 1 | 267 | 6.07e-134 | 381 |
| Msa0835180 | AT5G15090.1 | 49.640 | 278 | 134 | 2 | 1 | 276 | 1 | 274 | 2.87e-89 | 266 |
| Msa0835180 | AT5G15090.2 | 49.640 | 278 | 134 | 2 | 1 | 276 | 1 | 274 | 2.87e-89 | 266 |
| Msa0835180 | AT3G01280.1 | 48.551 | 276 | 142 | 0 | 1 | 276 | 1 | 276 | 9.07e-88 | 263 |
| Msa0835180 | AT5G57490.1 | 46.377 | 276 | 146 | 1 | 1 | 276 | 1 | 274 | 1.04e-83 | 252 |
| Msa0835180 | AT3G49920.1 | 47.826 | 276 | 94 | 3 | 1 | 276 | 1 | 226 | 3.96e-81 | 244 |
| Msa0835180 | AT3G49920.2 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.63e-28 | 106 |
| Msa0835180 | AT3G49920.4 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.63e-28 | 106 |
| Msa0835180 | AT3G49920.3 | 67.123 | 73 | 24 | 0 | 1 | 73 | 1 | 73 | 3.19e-28 | 104 |
Find 91 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAGTTTATTTATTT+TGG | 0.104599 | 5_4:-8472846 | None:intergenic |
| TGGGATTAGTTTCACGAAAT+TGG | 0.171691 | 5_4:+8476980 | Msa0835180:CDS |
| CAAGAAGAGTGCTGCTGTTT+TGG | 0.209970 | 5_4:+8477172 | Msa0835180:CDS |
| AAGTCAGTGCTGACTATTTC+TGG | 0.215709 | 5_4:+8477335 | Msa0835180:CDS |
| CAGCAGCACTCTTCTTGATT+TGG | 0.271448 | 5_4:-8477166 | None:intergenic |
| TCTTCTTGATTTGGTCTAGA+TGG | 0.272788 | 5_4:-8477157 | None:intergenic |
| TTCCACAGATGAGCGTTTCT+AGG | 0.313600 | 5_4:+8477522 | Msa0835180:three_prime_UTR |
| AAGCTGCCTGATTATAGTTC+TGG | 0.319469 | 5_4:+8476705 | Msa0835180:CDS |
| CCGGGTCTCTACTCCGATAT+TGG | 0.330823 | 5_4:+8472977 | Msa0835180:CDS |
| GTAGTAGACATTCTGATATA+TGG | 0.350500 | 5_4:+8477641 | Msa0835180:three_prime_UTR |
| AATATGAAAATAGAACTTAA+AGG | 0.369433 | 5_4:-8477705 | None:intergenic |
| TGCACTGTGCTTCACGAAAC+AGG | 0.370007 | 5_4:-8472882 | None:intergenic |
| AAGAAAGGAGGACTCTCAAC+TGG | 0.374633 | 5_4:+8476476 | Msa0835180:CDS |
| TTTGGCTTTCTTGCCAATAT+CGG | 0.377017 | 5_4:-8472990 | None:intergenic |
| TCGTCTTTGTGGATGGAAAA+AGG | 0.380002 | 5_4:-8476671 | None:intergenic |
| TCTGATTTGTTGAGAACCTT+CGG | 0.383141 | 5_4:-8477202 | None:intergenic |
| GGTTCTCCAACCCTTGCATT+TGG | 0.392286 | 5_4:+8476906 | Msa0835180:CDS |
| AATTGAAGCTATCGTCTTTG+TGG | 0.392722 | 5_4:-8476682 | None:intergenic |
| GTTTCTAGGTTCTTTCTGAT+TGG | 0.394439 | 5_4:+8477536 | Msa0835180:three_prime_UTR |
| GTGGCAGAAACATCAAAGAT+AGG | 0.400234 | 5_4:-8476879 | None:intergenic |
| CTGATTTGTTGAGAACCTTC+GGG | 0.400674 | 5_4:-8477201 | None:intergenic |
| ATTATTCTACCCTCCCTTCA+AGG | 0.401275 | 5_4:-8477496 | None:intergenic |
| CAGTGTAGCGACTGAGGTTA+AGG | 0.410879 | 5_4:-8476847 | None:intergenic |
| GAAATAGTCAGCACTGACTT+TGG | 0.413358 | 5_4:-8477332 | None:intergenic |
| CAATAACTTGAATCAACCTA+TGG | 0.418971 | 5_4:+8477570 | Msa0835180:three_prime_UTR |
| AAATAGTCAGCACTGACTTT+GGG | 0.425846 | 5_4:-8477331 | None:intergenic |
| AGCAATGGCCAACCCAAACT+TGG | 0.435980 | 5_4:-8477390 | None:intergenic |
| CTTGCATTTGGTGCTGAGGC+AGG | 0.440987 | 5_4:+8476918 | Msa0835180:CDS |
| ACTTCAACTGCTTTGAAGAA+AGG | 0.441282 | 5_4:+8476461 | Msa0835180:CDS |
| AACAAATCAGAACACTATTA+CGG | 0.464512 | 5_4:+8477214 | Msa0835180:CDS |
| GTTTCATCTTACAGCACTAC+TGG | 0.464789 | 5_4:+8473138 | Msa0835180:CDS |
| TCAACAATCAAGGAAAGGTT+GGG | 0.467034 | 5_4:+8477285 | Msa0835180:CDS |
| GCAGGCTATGATACTAAATC+TGG | 0.479364 | 5_4:+8476936 | Msa0835180:CDS |
| ATCGAAGATGAGCAAGGGAC+CGG | 0.481251 | 5_4:+8472958 | Msa0835180:exon |
| TCTTGATTTGGTCTAGATGG+TGG | 0.484846 | 5_4:-8477154 | None:intergenic |
| TTTGATGTTTCTGCCACTGT+TGG | 0.487886 | 5_4:+8476885 | Msa0835180:CDS |
| TTTGGTGGCCCTTGAAGGGA+GGG | 0.490932 | 5_4:+8477487 | Msa0835180:three_prime_UTR |
| TGGCAGAAACATCAAAGATA+GGG | 0.491347 | 5_4:-8476878 | None:intergenic |
| AACCCTTGCATTTGGTGCTG+AGG | 0.491987 | 5_4:+8476914 | Msa0835180:CDS |
| TTCAACAATCAAGGAAAGGT+TGG | 0.493974 | 5_4:+8477284 | Msa0835180:CDS |
| AGGACTCTCAACTGGGGATG+TGG | 0.494637 | 5_4:+8476484 | Msa0835180:CDS |
| CTTTCCTATCAGTGGCGACA+AGG | 0.504369 | 5_4:+8477106 | Msa0835180:intron |
| AAAGCTAGGTTCAACAATCA+AGG | 0.508554 | 5_4:+8477275 | Msa0835180:CDS |
| CTCTCAACTGGGGATGTGGC+AGG | 0.509688 | 5_4:+8476488 | Msa0835180:CDS |
| TACAATGTAAGAAGCAAAGC+AGG | 0.516555 | 5_4:-8477621 | None:intergenic |
| ACCTTGCCAGAACTATAATC+AGG | 0.517672 | 5_4:-8476711 | None:intergenic |
| AAGGTAAAACACAATAGATA+AGG | 0.519952 | 5_4:-8477686 | None:intergenic |
| AGTAGTGCTGTAAGATGAAA+CGG | 0.520738 | 5_4:-8473136 | None:intergenic |
| TGATTTGGTCTAGATGGTGG+AGG | 0.521733 | 5_4:-8477151 | None:intergenic |
| GAAGCTATCGTCTTTGTGGA+TGG | 0.527003 | 5_4:-8476678 | None:intergenic |
| TGAGGTTGATACCAAGGCCC+TGG | 0.529736 | 5_4:+8477358 | Msa0835180:CDS |
| TTATTCTACCCTCCCTTCAA+GGG | 0.531937 | 5_4:-8477495 | None:intergenic |
| CAGAACACTATTACGGTTGG+AGG | 0.533154 | 5_4:+8477221 | Msa0835180:CDS |
| TTGGGAAGAGCTCGTGCTGT+AGG | 0.540312 | 5_4:-8477313 | None:intergenic |
| TCTAAAATCGAAGATGAGCA+AGG | 0.548154 | 5_4:+8472952 | Msa0835180:exon |
| CTGCCTCAGCACCAAATGCA+AGG | 0.548233 | 5_4:-8476917 | None:intergenic |
| AATCAGAACACTATTACGGT+TGG | 0.550635 | 5_4:+8477218 | Msa0835180:CDS |
| AGGTTAAGGTAGCATGGTCG+TGG | 0.557344 | 5_4:-8476833 | None:intergenic |
| TCAGCACCAAATGCAAGGGT+TGG | 0.562271 | 5_4:-8476912 | None:intergenic |
| CCAATATCGGAGTAGAGACC+CGG | 0.566055 | 5_4:-8472977 | None:intergenic |
| GCAATGGCCAACCCAAACTT+GGG | 0.566984 | 5_4:-8477389 | None:intergenic |
| ACTTCAAGGTTTGAGAGCAA+TGG | 0.567035 | 5_4:-8477405 | None:intergenic |
| AGAAAGGAGGACTCTCAACT+GGG | 0.567353 | 5_4:+8476477 | Msa0835180:CDS |
| TTCTGGTGAGGTTGATACCA+AGG | 0.578817 | 5_4:+8477352 | Msa0835180:CDS |
| TCGAAGATGAGCAAGGGACC+GGG | 0.581110 | 5_4:+8472959 | Msa0835180:exon |
| AAATGGGAAACGGAAGCCAT+AGG | 0.584624 | 5_4:-8477586 | None:intergenic |
| CTAGCTTTGATCTGTGTCAG+AGG | 0.591430 | 5_4:-8477260 | None:intergenic |
| ACAATAGATAAGGATCCTCT+CGG | 0.592510 | 5_4:-8477676 | None:intergenic |
| AGTGCTGACTATTTCTGGTG+AGG | 0.600743 | 5_4:+8477340 | Msa0835180:CDS |
| AACCTAGAAACGCTCATCTG+TGG | 0.604343 | 5_4:-8477524 | None:intergenic |
| CAACAATCAAGGAAAGGTTG+GGG | 0.608378 | 5_4:+8477286 | Msa0835180:CDS |
| TGCCTCAGCACCAAATGCAA+GGG | 0.611427 | 5_4:-8476916 | None:intergenic |
| TAGGTTCAACAATCAAGGAA+AGG | 0.612340 | 5_4:+8477280 | Msa0835180:CDS |
| TCAACTGCTTTGAAGAAAGG+AGG | 0.613940 | 5_4:+8476464 | Msa0835180:CDS |
| CGACTGAGGTTAAGGTAGCA+TGG | 0.618567 | 5_4:-8476839 | None:intergenic |
| TTGCTTCAGTGTAGCGACTG+AGG | 0.620374 | 5_4:-8476853 | None:intergenic |
| GCCTGATTATAGTTCTGGCA+AGG | 0.623753 | 5_4:+8476710 | Msa0835180:CDS |
| GGCAGAAACATCAAAGATAG+GGG | 0.624754 | 5_4:-8476877 | None:intergenic |
| TTTCCTATCAGTGGCGACAA+GGG | 0.625564 | 5_4:+8477107 | Msa0835180:intron |
| CTAAAATCGAAGATGAGCAA+GGG | 0.627918 | 5_4:+8472953 | Msa0835180:exon |
| CTCTGACACAGATCAAAGCT+AGG | 0.632557 | 5_4:+8477261 | Msa0835180:CDS |
| GTGCTTCACGAAACAGGGTG+TGG | 0.632752 | 5_4:-8472876 | None:intergenic |
| TAGCTTTGATCTGTGTCAGA+GGG | 0.634327 | 5_4:-8477259 | None:intergenic |
| TGAAACGGTAAGCTTCTGAT+CGG | 0.639844 | 5_4:-8473121 | None:intergenic |
| GATATTGGCAAGAAAGCCAA+AGG | 0.654162 | 5_4:+8472992 | Msa0835180:CDS |
| GCACTGTGCTTCACGAAACA+GGG | 0.655155 | 5_4:-8472881 | None:intergenic |
| AGAACACTATTACGGTTGGA+GGG | 0.671397 | 5_4:+8477222 | Msa0835180:CDS |
| AACAATCAAGGAAAGGTTGG+GGG | 0.680087 | 5_4:+8477287 | Msa0835180:CDS |
| TGGAAGTCTTGTTCTCCGAG+AGG | 0.705406 | 5_4:+8477661 | Msa0835180:three_prime_UTR |
| GAAAGGAGGACTCTCAACTG+GGG | 0.714176 | 5_4:+8476478 | Msa0835180:CDS |
| AAGGGTTGGAGAACCAACAG+TGG | 0.718653 | 5_4:-8476898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTATAAATTGTAG+TGG | - | chr5_4:8473185-8473204 | None:intergenic | 10.0% |
| !!! | ATTTTCAAAAAAGAATTAAT+GGG | - | chr5_4:8473770-8473789 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAAAAGAATTAA+TGG | - | chr5_4:8473771-8473790 | None:intergenic | 10.0% |
| !! | ATACATTAAAATAAAAAGAT+AGG | - | chr5_4:8473904-8473923 | None:intergenic | 10.0% |
| !!! | AAAGTGTTATAATAAAATAA+AGG | - | chr5_4:8474809-8474828 | None:intergenic | 10.0% |
| !! | ATGTAGAATATAATTTAAAA+AGG | + | chr5_4:8475079-8475098 | Msa0835180:intron | 10.0% |
| !! | TGTAGAATATAATTTAAAAA+GGG | + | chr5_4:8475080-8475099 | Msa0835180:intron | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | - | chr5_4:8476068-8476087 | None:intergenic | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | - | chr5_4:8476069-8476088 | None:intergenic | 10.0% |
| !!! | TACAGTTTTATTTTTTTAAT+AGG | + | chr5_4:8476202-8476221 | Msa0835180:intron | 10.0% |
| !!! | ACAGTTTTATTTTTTTAATA+GGG | + | chr5_4:8476203-8476222 | Msa0835180:intron | 10.0% |
| !!! | AAGAAGAAGTTTATTTATTT+TGG | - | chr5_4:8472849-8472868 | None:intergenic | 15.0% |
| !!! | AACGAAATATTTTAATATCA+AGG | - | chr5_4:8473504-8473523 | None:intergenic | 15.0% |
| !!! | ACAATAACTCTTTTTATATA+GGG | - | chr5_4:8473608-8473627 | None:intergenic | 15.0% |
| !!! | TTAGAATTTTGATATATTGA+AGG | + | chr5_4:8473696-8473715 | Msa0835180:intron | 15.0% |
| !!! | TTTTCAAAAAAGAATTAATG+GGG | - | chr5_4:8473769-8473788 | None:intergenic | 15.0% |
| !! | AGAGAAAAAATAATAAAAGA+GGG | - | chr5_4:8474386-8474405 | None:intergenic | 15.0% |
| !!! | TTTACATTTTATTACTTACA+GGG | - | chr5_4:8474559-8474578 | None:intergenic | 15.0% |
| !!! | ATTTACATTTTATTACTTAC+AGG | - | chr5_4:8474560-8474579 | None:intergenic | 15.0% |
| !! | ATAAAATGTAAATGTAATGT+AGG | + | chr5_4:8474567-8474586 | Msa0835180:intron | 15.0% |
| !! | GTAGAATATAATTTAAAAAG+GGG | + | chr5_4:8475081-8475100 | Msa0835180:intron | 15.0% |
| !! | TAGAATATAATTTAAAAAGG+GGG | + | chr5_4:8475082-8475101 | Msa0835180:intron | 15.0% |
| !!! | AGCTTTATAAATTAATTATC+TGG | + | chr5_4:8475290-8475309 | Msa0835180:intron | 15.0% |
| !! | TAATAAGAAAAAGTAAGAAA+GGG | - | chr5_4:8475857-8475876 | None:intergenic | 15.0% |
| !! | TTAATAAGAAAAAGTAAGAA+AGG | - | chr5_4:8475858-8475877 | None:intergenic | 15.0% |
| !!! | TACATTTTCATAATTCATTT+TGG | + | chr5_4:8475898-8475917 | Msa0835180:intron | 15.0% |
| !!! | CAGTTTTATTTTTTTAATAG+GGG | + | chr5_4:8476204-8476223 | Msa0835180:intron | 15.0% |
| !!! | AGTTTTATTTTTTTAATAGG+GGG | + | chr5_4:8476205-8476224 | Msa0835180:intron | 15.0% |
| !! | AATATGAAAATAGAACTTAA+AGG | - | chr5_4:8477708-8477727 | None:intergenic | 15.0% |
| !! | CTTATGTTCAATTAATTCTT+GGG | + | chr5_4:8473365-8473384 | Msa0835180:intron | 20.0% |
| !! | TTATGTTCAATTAATTCTTG+GGG | + | chr5_4:8473366-8473385 | Msa0835180:intron | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | - | chr5_4:8473443-8473462 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | - | chr5_4:8473444-8473463 | None:intergenic | 20.0% |
| !!! | CACAATAACTCTTTTTATAT+AGG | - | chr5_4:8473609-8473628 | None:intergenic | 20.0% |
| !!! | TCTTTTTTGAAAATTTTGAC+CGG | + | chr5_4:8473776-8473795 | Msa0835180:intron | 20.0% |
| !! | GAGAGAAAAAATAATAAAAG+AGG | - | chr5_4:8474387-8474406 | None:intergenic | 20.0% |
| !!! | TACTTTTGTGAATTTAGTTT+TGG | + | chr5_4:8474673-8474692 | Msa0835180:intron | 20.0% |
| !! | TAAACAAAATAGCAATATCT+TGG | + | chr5_4:8474834-8474853 | Msa0835180:intron | 20.0% |
| !! | AGAATATAATTTAAAAAGGG+GGG | + | chr5_4:8475083-8475102 | Msa0835180:intron | 20.0% |
| !! | TAAGAAAAATCACAAATCAA+TGG | + | chr5_4:8475338-8475357 | Msa0835180:intron | 20.0% |
| !! | ATGCTTATTACCTAAAATTT+GGG | + | chr5_4:8475739-8475758 | Msa0835180:intron | 20.0% |
| !!! | TACTTATTGGCTAAAAAATT+AGG | + | chr5_4:8475949-8475968 | Msa0835180:intron | 20.0% |
| !!! | ACTTATTGGCTAAAAAATTA+GGG | + | chr5_4:8475950-8475969 | Msa0835180:intron | 20.0% |
| !! | ATCTAATGTTCATTTCAATA+TGG | + | chr5_4:8476418-8476437 | Msa0835180:intron | 20.0% |
| !! | AAAAATAAAGGAAAACTTCA+AGG | - | chr5_4:8477422-8477441 | None:intergenic | 20.0% |
| !!! | ATCACACGTTTTAAAAATAA+AGG | - | chr5_4:8477434-8477453 | None:intergenic | 20.0% |
| !!! | TATTCAATACTCCATTTTTT+TGG | + | chr5_4:8477469-8477488 | Msa0835180:three_prime_UTR | 20.0% |
| !! | ATTTAATCAAAAATGGGAAA+CGG | - | chr5_4:8477599-8477618 | None:intergenic | 20.0% |
| !! | CAGGAAATTTAATCAAAAAT+GGG | - | chr5_4:8477605-8477624 | None:intergenic | 20.0% |
| !!! | TGTTTTAGATCTTTTGACAA+AGG | + | chr5_4:8473089-8473108 | Msa0835180:intron | 25.0% |
| ! | GCTTATGTTCAATTAATTCT+TGG | + | chr5_4:8473364-8473383 | Msa0835180:intron | 25.0% |
| ! | ACAATAAGTAAGTACGTATA+AGG | - | chr5_4:8473576-8473595 | None:intergenic | 25.0% |
| ! | AAGAGTTATTGTGAGTATTA+AGG | + | chr5_4:8473616-8473635 | Msa0835180:intron | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+GGG | + | chr5_4:8473617-8473636 | Msa0835180:intron | 25.0% |
| !!! | TTACGATGTTTTTAAAGGAA+CGG | - | chr5_4:8473874-8473893 | None:intergenic | 25.0% |
| !!! | ACTGTTTACGATGTTTTTAA+AGG | - | chr5_4:8473879-8473898 | None:intergenic | 25.0% |
| ! | TTGTTTATCAAAAACTCGTA+AGG | + | chr5_4:8474096-8474115 | Msa0835180:intron | 25.0% |
| ! | TTATGTACAGACTAAAATAC+TGG | - | chr5_4:8474468-8474487 | None:intergenic | 25.0% |
| ! | CTGATTCATATATTATTACG+TGG | + | chr5_4:8474491-8474510 | Msa0835180:intron | 25.0% |
| !! | TTCTGTATAAACTTGTTTCA+CGG | + | chr5_4:8474645-8474664 | Msa0835180:intron | 25.0% |
| ! | AATACTATATGAACAATGTC+TGG | + | chr5_4:8474878-8474897 | Msa0835180:intron | 25.0% |
| ! | ATACTATATGAACAATGTCT+GGG | + | chr5_4:8474879-8474898 | Msa0835180:intron | 25.0% |
| !!! | TTTTCATGTCTGAAATACTT+GGG | + | chr5_4:8475154-8475173 | Msa0835180:intron | 25.0% |
| ! | AAACGATTTATGAGCATAAA+TGG | - | chr5_4:8475199-8475218 | None:intergenic | 25.0% |
| !!! | ATGATCAATTGATTTGTCTA+AGG | + | chr5_4:8475577-8475596 | Msa0835180:intron | 25.0% |
| !!! | TGATCAATTGATTTGTCTAA+GGG | + | chr5_4:8475578-8475597 | Msa0835180:intron | 25.0% |
| ! | TATGTTGCATTCATAAATGT+TGG | + | chr5_4:8475606-8475625 | Msa0835180:intron | 25.0% |
| ! | AGAAATTCCAAAAGGAATTA+TGG | - | chr5_4:8475699-8475718 | None:intergenic | 25.0% |
| ! | CATGCTTATTACCTAAAATT+TGG | + | chr5_4:8475738-8475757 | Msa0835180:intron | 25.0% |
| ! | TGCTTATTACCTAAAATTTG+GGG | + | chr5_4:8475740-8475759 | Msa0835180:intron | 25.0% |
| ! | AAAAAGTAAGAAAGGGATAA+AGG | - | chr5_4:8475850-8475869 | None:intergenic | 25.0% |
| !! | TTGTACGTTATTGATGATTA+TGG | - | chr5_4:8476116-8476135 | None:intergenic | 25.0% |
| ! | ATAATCATCAATAACGTACA+AGG | + | chr5_4:8476115-8476134 | Msa0835180:intron | 25.0% |
| !!! | TTATTTTTTTAATAGGGGGA+TGG | + | chr5_4:8476209-8476228 | Msa0835180:intron | 25.0% |
| !! | GTTCTTTTTAAATTCATGTC+TGG | + | chr5_4:8476285-8476304 | Msa0835180:intron | 25.0% |
| !!! | CTCAATTTTGACATCAATAA+GGG | - | chr5_4:8476534-8476553 | None:intergenic | 25.0% |
| !!! | TCTCAATTTTGACATCAATA+AGG | - | chr5_4:8476535-8476554 | None:intergenic | 25.0% |
| !! | GTGATTTTTCATCTTTTGTA+TGG | + | chr5_4:8476736-8476755 | Msa0835180:intron | 25.0% |
| !! | AGTTTTACTAAATACAACAC+TGG | + | chr5_4:8476960-8476979 | Msa0835180:CDS | 25.0% |
| !! | GTTTTACTAAATACAACACT+GGG | + | chr5_4:8476961-8476980 | Msa0835180:CDS | 25.0% |
| ! | AACAAATCAGAACACTATTA+CGG | + | chr5_4:8477214-8477233 | Msa0835180:CDS | 25.0% |
| ! | GCAGGAAATTTAATCAAAAA+TGG | - | chr5_4:8477606-8477625 | None:intergenic | 25.0% |
| ! | AAGGTAAAACACAATAGATA+AGG | - | chr5_4:8477689-8477708 | None:intergenic | 25.0% |
| TAATTGCATTATCAGATGTC+AGG | + | chr5_4:8473233-8473252 | Msa0835180:intron | 30.0% | |
| !! | ATTAATTTGTTAGCCGTTGT+CGG | + | chr5_4:8473301-8473320 | Msa0835180:intron | 30.0% |
| ! | TAATCACACATCAGAAGTAT+CGG | - | chr5_4:8473337-8473356 | None:intergenic | 30.0% |
| CAAAATTTCAAAATAGTCCC+TGG | + | chr5_4:8473452-8473471 | Msa0835180:intron | 30.0% | |
| TAAGGGATTATTTAAGCGTT+AGG | + | chr5_4:8473634-8473653 | Msa0835180:intron | 30.0% | |
| AAGGGATTATTTAAGCGTTA+GGG | + | chr5_4:8473635-8473654 | Msa0835180:intron | 30.0% | |
| !!! | GACTATTTTGACTAACAAAG+TGG | + | chr5_4:8473657-8473676 | Msa0835180:intron | 30.0% |
| TATGAAGCTTAGATATAGAC+AGG | - | chr5_4:8473824-8473843 | None:intergenic | 30.0% | |
| ! | AATATCTTTTGTGTTGTCCT+TGG | + | chr5_4:8474155-8474174 | Msa0835180:intron | 30.0% |
| AAAAAAACTAACACACGACA+TGG | - | chr5_4:8474197-8474216 | None:intergenic | 30.0% | |
| CAACTTGGATGGATAAAATT+TGG | - | chr5_4:8474263-8474282 | None:intergenic | 30.0% | |
| ! | TGTTTTGTCTATAGACAAAG+CGG | - | chr5_4:8474329-8474348 | None:intergenic | 30.0% |
| AATAAACATCAGCCTTAACA+AGG | - | chr5_4:8474520-8474539 | None:intergenic | 30.0% | |
| !! | TTATACAGAAGCATTGGATT+TGG | - | chr5_4:8474635-8474654 | None:intergenic | 30.0% |
| ! | ACAAGTTTATACAGAAGCAT+TGG | - | chr5_4:8474641-8474660 | None:intergenic | 30.0% |
| ATTCTGTATAAGTGCGATAA+TGG | - | chr5_4:8474782-8474801 | None:intergenic | 30.0% | |
| ACTGAATGTTTAGAGACAAT+TGG | + | chr5_4:8474915-8474934 | Msa0835180:intron | 30.0% | |
| !! | GTTTTCATGTCTGAAATACT+TGG | + | chr5_4:8475153-8475172 | Msa0835180:intron | 30.0% |
| ! | CACATTTCCATAATTCCTTT+TGG | + | chr5_4:8475689-8475708 | Msa0835180:intron | 30.0% |
| ATGTAAGGAGAAATTCCAAA+AGG | - | chr5_4:8475707-8475726 | None:intergenic | 30.0% | |
| !! | ATTGTACTTTCTGGTTATCA+TGG | + | chr5_4:8476310-8476329 | Msa0835180:intron | 30.0% |
| CATAGCACATTCTTAGTATT+TGG | - | chr5_4:8476343-8476362 | None:intergenic | 30.0% | |
| CAAATACTAAGAATGTGCTA+TGG | + | chr5_4:8476341-8476360 | Msa0835180:intron | 30.0% | |
| CTTAAGTAAATCATCTCATG+TGG | + | chr5_4:8476607-8476626 | Msa0835180:intron | 30.0% | |
| GAGATTTGTAACAGAAATCT+TGG | - | chr5_4:8477045-8477064 | None:intergenic | 30.0% | |
| TTTCTGTTACAAATCTCTAG+CGG | + | chr5_4:8477048-8477067 | Msa0835180:intron | 30.0% | |
| !!! | TCAATACTCCATTTTTTTGG+TGG | + | chr5_4:8477472-8477491 | Msa0835180:three_prime_UTR | 30.0% |
| CAATAACTTGAATCAACCTA+TGG | + | chr5_4:8477570-8477589 | Msa0835180:three_prime_UTR | 30.0% | |
| GTAGTAGACATTCTGATATA+TGG | + | chr5_4:8477641-8477660 | Msa0835180:three_prime_UTR | 30.0% | |
| ! | TCTAAAATCGAAGATGAGCA+AGG | + | chr5_4:8472952-8472971 | Msa0835180:exon | 35.0% |
| CTAAAATCGAAGATGAGCAA+GGG | + | chr5_4:8472953-8472972 | Msa0835180:exon | 35.0% | |
| !! | TTTGGCTTTCTTGCCAATAT+CGG | - | chr5_4:8472993-8473012 | None:intergenic | 35.0% |
| ! | GAATCGATTCAATTCACCTT+TGG | - | chr5_4:8473011-8473030 | None:intergenic | 35.0% |
| AGTAGTGCTGTAAGATGAAA+CGG | - | chr5_4:8473139-8473158 | None:intergenic | 35.0% | |
| ATTATCAGATGTCAGGTTAC+TGG | + | chr5_4:8473240-8473259 | Msa0835180:intron | 35.0% | |
| ATTCATTCGTTCCTCATTCA+GGG | - | chr5_4:8473408-8473427 | None:intergenic | 35.0% | |
| TATTCATTCGTTCCTCATTC+AGG | - | chr5_4:8473409-8473428 | None:intergenic | 35.0% | |
| ACTAACAAAATGCACAACCA+GGG | - | chr5_4:8473472-8473491 | None:intergenic | 35.0% | |
| ACTAACAAAGTGGACAATCA+GGG | + | chr5_4:8473667-8473686 | Msa0835180:intron | 35.0% | |
| TAATGGGGTAATAGTCACTT+TGG | - | chr5_4:8473754-8473773 | None:intergenic | 35.0% | |
| !! | GAGCATTTGATGATGATTGT+CGG | + | chr5_4:8473848-8473867 | Msa0835180:intron | 35.0% |
| GATATTCAGCCTAACAATGT+CGG | - | chr5_4:8474141-8474160 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTATAGACGAAG+CGG | - | chr5_4:8474227-8474246 | None:intergenic | 35.0% |
| ! | TTTATCCATCCAAGTTGAGT+CGG | + | chr5_4:8474266-8474285 | Msa0835180:intron | 35.0% |
| !! | TGGTTTTCAAGACATGTTGT+TGG | + | chr5_4:8474725-8474744 | Msa0835180:intron | 35.0% |
| !! | TGTATAAGTGCGATAATGGA+TGG | - | chr5_4:8474778-8474797 | None:intergenic | 35.0% |
| TAGACATGAACTTTGACAGA+AGG | + | chr5_4:8474946-8474965 | Msa0835180:intron | 35.0% | |
| AGACATGAACTTTGACAGAA+GGG | + | chr5_4:8474947-8474966 | Msa0835180:intron | 35.0% | |
| !!! | ATGGTTTTAGGAATCAGACA+TGG | + | chr5_4:8475030-8475049 | Msa0835180:intron | 35.0% |
| TTTAAAAAGGGGGGAATTCT+TGG | + | chr5_4:8475092-8475111 | Msa0835180:intron | 35.0% | |
| ! | ATGTTGGAAGCCTTTTGTAT+AGG | + | chr5_4:8475622-8475641 | Msa0835180:intron | 35.0% |
| TATTGAGTGGCCTATACAAA+AGG | - | chr5_4:8475635-8475654 | None:intergenic | 35.0% | |
| CAATGGCAACACTAATCATT+TGG | - | chr5_4:8475669-8475688 | None:intergenic | 35.0% | |
| GGAATTATGGAAATGTGCAA+TGG | - | chr5_4:8475686-8475705 | None:intergenic | 35.0% | |
| TACCTAAAATTTGGGGATAG+TGG | + | chr5_4:8475747-8475766 | Msa0835180:intron | 35.0% | |
| ! | ATCCACTATCCCCAAATTTT+AGG | - | chr5_4:8475752-8475771 | None:intergenic | 35.0% |
| GTTGCATACTGCATACTTAT+TGG | + | chr5_4:8475936-8475955 | Msa0835180:intron | 35.0% | |
| TTTCAACTTGGTTGTTCTGA+AGG | + | chr5_4:8476005-8476024 | Msa0835180:intron | 35.0% | |
| TAATTTCCAGACACAAAGCT+TGG | - | chr5_4:8476262-8476281 | None:intergenic | 35.0% | |
| !! | ACTTCAACTGCTTTGAAGAA+AGG | + | chr5_4:8476461-8476480 | Msa0835180:CDS | 35.0% |
| AAAAAGGTCAGTGAATGTGA+GGG | - | chr5_4:8476658-8476677 | None:intergenic | 35.0% | |
| AATTGAAGCTATCGTCTTTG+TGG | - | chr5_4:8476685-8476704 | None:intergenic | 35.0% | |
| ! | GATTTGTCATTTGCAGTTAG+AGG | + | chr5_4:8476800-8476819 | Msa0835180:intron | 35.0% |
| TGGCAGAAACATCAAAGATA+GGG | - | chr5_4:8476881-8476900 | None:intergenic | 35.0% | |
| !! | TGGGATTAGTTTCACGAAAT+TGG | + | chr5_4:8476980-8476999 | Msa0835180:CDS | 35.0% |
| AACATGTTCTTTCCTATCAG+TGG | + | chr5_4:8477098-8477117 | Msa0835180:intron | 35.0% | |
| !! | TCTTCTTGATTTGGTCTAGA+TGG | - | chr5_4:8477160-8477179 | None:intergenic | 35.0% |
| !! | TCTGATTTGTTGAGAACCTT+CGG | - | chr5_4:8477205-8477224 | None:intergenic | 35.0% |
| AATCAGAACACTATTACGGT+TGG | + | chr5_4:8477218-8477237 | Msa0835180:CDS | 35.0% | |
| AAAGCTAGGTTCAACAATCA+AGG | + | chr5_4:8477275-8477294 | Msa0835180:CDS | 35.0% | |
| TAGGTTCAACAATCAAGGAA+AGG | + | chr5_4:8477280-8477299 | Msa0835180:CDS | 35.0% | |
| TTCAACAATCAAGGAAAGGT+TGG | + | chr5_4:8477284-8477303 | Msa0835180:CDS | 35.0% | |
| TCAACAATCAAGGAAAGGTT+GGG | + | chr5_4:8477285-8477304 | Msa0835180:CDS | 35.0% | |
| !! | AAATAGTCAGCACTGACTTT+GGG | - | chr5_4:8477334-8477353 | None:intergenic | 35.0% |
| !!! | AAACTTGGGTTTTTTCTCCA+GGG | - | chr5_4:8477378-8477397 | None:intergenic | 35.0% |
| TGGAGAAAAAACCCAAGTTT+GGG | + | chr5_4:8477378-8477397 | Msa0835180:CDS | 35.0% | |
| ! | GTTTCTAGGTTCTTTCTGAT+TGG | + | chr5_4:8477536-8477555 | Msa0835180:three_prime_UTR | 35.0% |
| TACAATGTAAGAAGCAAAGC+AGG | - | chr5_4:8477624-8477643 | None:intergenic | 35.0% | |
| ACAATAGATAAGGATCCTCT+CGG | - | chr5_4:8477679-8477698 | None:intergenic | 35.0% | |
| GATATTGGCAAGAAAGCCAA+AGG | + | chr5_4:8472992-8473011 | Msa0835180:CDS | 40.0% | |
| TGAAACGGTAAGCTTCTGAT+CGG | - | chr5_4:8473124-8473143 | None:intergenic | 40.0% | |
| GTTTCATCTTACAGCACTAC+TGG | + | chr5_4:8473138-8473157 | Msa0835180:CDS | 40.0% | |
| TCTGATGTGTGATTAGTGTC+TGG | + | chr5_4:8473342-8473361 | Msa0835180:intron | 40.0% | |
| GACTAACAAAATGCACAACC+AGG | - | chr5_4:8473473-8473492 | None:intergenic | 40.0% | |
| GACTAACAAAGTGGACAATC+AGG | + | chr5_4:8473666-8473685 | Msa0835180:intron | 40.0% | |
| ! | TGACTACTTGCTACACATTC+AGG | + | chr5_4:8473726-8473745 | Msa0835180:intron | 40.0% |
| ! | GACTACTTGCTACACATTCA+GGG | + | chr5_4:8473727-8473746 | Msa0835180:intron | 40.0% |
| CTCCACACTTAAACGTGATT+TGG | + | chr5_4:8473967-8473986 | Msa0835180:intron | 40.0% | |
| TGCCAAATCACGTTTAAGTG+TGG | - | chr5_4:8473972-8473991 | None:intergenic | 40.0% | |
| TTGTTGTCTATAGACGAAGC+GGG | - | chr5_4:8474226-8474245 | None:intergenic | 40.0% | |
| TGTCTATAGACAAAGCGGTT+TGG | - | chr5_4:8474324-8474343 | None:intergenic | 40.0% | |
| ! | GCTCGCTTTAAATGTTTCTG+AGG | - | chr5_4:8474444-8474463 | None:intergenic | 40.0% |
| ATTACGTGGTCACCTTGTTA+AGG | + | chr5_4:8474505-8474524 | Msa0835180:intron | 40.0% | |
| CTTTCTGCTAGTCATAAGAG+CGG | + | chr5_4:8474696-8474715 | Msa0835180:intron | 40.0% | |
| TCAGACATGGAAGAAACAGA+TGG | + | chr5_4:8475043-8475062 | Msa0835180:intron | 40.0% | |
| CAGAGGCTCAGAAAAATTGT+TGG | + | chr5_4:8475375-8475394 | Msa0835180:intron | 40.0% | |
| AGGCTCAGAAAAATTGTTGG+TGG | + | chr5_4:8475378-8475397 | Msa0835180:intron | 40.0% | |
| GAGATTGAGTGATTGATCAC+TGG | + | chr5_4:8475463-8475482 | Msa0835180:intron | 40.0% | |
| ! | GTGAGTTGAGAAATCTGTAG+AGG | + | chr5_4:8475490-8475509 | Msa0835180:intron | 40.0% |
| TTGAGAAATCTGTAGAGGAC+AGG | + | chr5_4:8475495-8475514 | Msa0835180:intron | 40.0% | |
| GGTGATTCAAACGTATTGAG+TGG | - | chr5_4:8475648-8475667 | None:intergenic | 40.0% | |
| ! | GCAATGAAAGCTTTTCAGCT+TGG | + | chr5_4:8475783-8475802 | Msa0835180:intron | 40.0% |
| TTTCAGCTTGGTTGTTCTGA+AGG | + | chr5_4:8475795-8475814 | Msa0835180:intron | 40.0% | |
| TATGCAGTATGCAACATGTG+AGG | - | chr5_4:8475931-8475950 | None:intergenic | 40.0% | |
| TGTCTGGCTATTGTACTTTC+TGG | + | chr5_4:8476301-8476320 | Msa0835180:intron | 40.0% | |
| !! | GTACTTTCTGGTTATCATGG+TGG | + | chr5_4:8476313-8476332 | Msa0835180:intron | 40.0% |
| CAATATGGCTTCTTCCTTTC+AGG | + | chr5_4:8476433-8476452 | Msa0835180:intron | 40.0% | |
| !! | TCAACTGCTTTGAAGAAAGG+AGG | + | chr5_4:8476464-8476483 | Msa0835180:CDS | 40.0% |
| AATTGAGACAGCGTCAATTG+TGG | + | chr5_4:8476547-8476566 | Msa0835180:intron | 40.0% | |
| ATTGAGACAGCGTCAATTGT+GGG | + | chr5_4:8476548-8476567 | Msa0835180:intron | 40.0% | |
| ! | GGTTGTATTGATCTGGAAGA+GGG | - | chr5_4:8476637-8476656 | None:intergenic | 40.0% |
| ! | ATGTGAGGGTTGTATTGATC+TGG | - | chr5_4:8476644-8476663 | None:intergenic | 40.0% |
| GAAAAAGGTCAGTGAATGTG+AGG | - | chr5_4:8476659-8476678 | None:intergenic | 40.0% | |
| TCGTCTTTGTGGATGGAAAA+AGG | - | chr5_4:8476674-8476693 | None:intergenic | 40.0% | |
| AAGCTGCCTGATTATAGTTC+TGG | + | chr5_4:8476705-8476724 | Msa0835180:CDS | 40.0% | |
| ACCTTGCCAGAACTATAATC+AGG | - | chr5_4:8476714-8476733 | None:intergenic | 40.0% | |
| !! | ACACTGTCTCTGAAATTGTG+TGG | + | chr5_4:8476777-8476796 | Msa0835180:intron | 40.0% |
| !! | CACTGTCTCTGAAATTGTGT+GGG | + | chr5_4:8476778-8476797 | Msa0835180:intron | 40.0% |
| GGCAGAAACATCAAAGATAG+GGG | - | chr5_4:8476880-8476899 | None:intergenic | 40.0% | |
| GTGGCAGAAACATCAAAGAT+AGG | - | chr5_4:8476882-8476901 | None:intergenic | 40.0% | |
| ! | TTTGATGTTTCTGCCACTGT+TGG | + | chr5_4:8476885-8476904 | Msa0835180:CDS | 40.0% |
| GCAGGCTATGATACTAAATC+TGG | + | chr5_4:8476936-8476955 | Msa0835180:CDS | 40.0% | |
| !! | TCTTGATTTGGTCTAGATGG+TGG | - | chr5_4:8477157-8477176 | None:intergenic | 40.0% |
| !! | CTGTTTTGGATATTACCCGA+AGG | + | chr5_4:8477186-8477205 | Msa0835180:CDS | 40.0% |
| !! | CTGATTTGTTGAGAACCTTC+GGG | - | chr5_4:8477204-8477223 | None:intergenic | 40.0% |
| AGAACACTATTACGGTTGGA+GGG | + | chr5_4:8477222-8477241 | Msa0835180:CDS | 40.0% | |
| !! | TAGCTTTGATCTGTGTCAGA+GGG | - | chr5_4:8477262-8477281 | None:intergenic | 40.0% |
| CAACAATCAAGGAAAGGTTG+GGG | + | chr5_4:8477286-8477305 | Msa0835180:CDS | 40.0% | |
| AACAATCAAGGAAAGGTTGG+GGG | + | chr5_4:8477287-8477306 | Msa0835180:CDS | 40.0% | |
| !! | GAAATAGTCAGCACTGACTT+TGG | - | chr5_4:8477335-8477354 | None:intergenic | 40.0% |
| !! | AAGTCAGTGCTGACTATTTC+TGG | + | chr5_4:8477335-8477354 | Msa0835180:CDS | 40.0% |
| !!! | CAAACTTGGGTTTTTTCTCC+AGG | - | chr5_4:8477379-8477398 | None:intergenic | 40.0% |
| CTGGAGAAAAAACCCAAGTT+TGG | + | chr5_4:8477377-8477396 | Msa0835180:CDS | 40.0% | |
| GAAAAAACCCAAGTTTGGGT+TGG | + | chr5_4:8477382-8477401 | Msa0835180:CDS | 40.0% | |
| ACTTCAAGGTTTGAGAGCAA+TGG | - | chr5_4:8477408-8477427 | None:intergenic | 40.0% | |
| TTCAAGGGCCACCAAAAAAA+TGG | - | chr5_4:8477483-8477502 | None:intergenic | 40.0% | |
| !!! | ATTTTTTTGGTGGCCCTTGA+AGG | + | chr5_4:8477482-8477501 | Msa0835180:three_prime_UTR | 40.0% |
| !!! | TTTTTTTGGTGGCCCTTGAA+GGG | + | chr5_4:8477483-8477502 | Msa0835180:three_prime_UTR | 40.0% |
| TTATTCTACCCTCCCTTCAA+GGG | - | chr5_4:8477498-8477517 | None:intergenic | 40.0% | |
| ATTATTCTACCCTCCCTTCA+AGG | - | chr5_4:8477499-8477518 | None:intergenic | 40.0% | |
| ! | GTCACTTTAGTCCCTGAATG+AGG | + | chr5_4:8473394-8473413 | Msa0835180:intron | 45.0% |
| GACAGGACACAACATAGACA+GGG | - | chr5_4:8473807-8473826 | None:intergenic | 45.0% | |
| AGACAGGACACAACATAGAC+AGG | - | chr5_4:8473808-8473827 | None:intergenic | 45.0% | |
| GATTTGGCAAGAGTAGTACC+TGG | + | chr5_4:8473983-8474002 | Msa0835180:intron | 45.0% | |
| CTATTCCCACTAAGTGGGAT+GGG | - | chr5_4:8474051-8474070 | None:intergenic | 45.0% | |
| CAAGCCTATTCCCACTAAGT+GGG | - | chr5_4:8474056-8474075 | None:intergenic | 45.0% | |
| GCGGTAATACCGACATTGTT+AGG | + | chr5_4:8474129-8474148 | Msa0835180:intron | 45.0% | |
| ! | TTCATGTAGCCGACTCAACT+TGG | - | chr5_4:8474278-8474297 | None:intergenic | 45.0% |
| !! | CGGTTTGGTTCAACACAATG+GGG | - | chr5_4:8474309-8474328 | None:intergenic | 45.0% |
| !! | GCGGTTTGGTTCAACACAAT+GGG | - | chr5_4:8474310-8474329 | None:intergenic | 45.0% |
| !! | AGCGGTTTGGTTCAACACAA+TGG | - | chr5_4:8474311-8474330 | None:intergenic | 45.0% |
| AGTCATAAGAGCGGAGCATA+TGG | + | chr5_4:8474705-8474724 | Msa0835180:intron | 45.0% | |
| !! | GCGATAATGGATGGTTCGTA+GGG | - | chr5_4:8474769-8474788 | None:intergenic | 45.0% |
| !! | TGCGATAATGGATGGTTCGT+AGG | - | chr5_4:8474770-8474789 | None:intergenic | 45.0% |
| ! | CTTGGACAAGAGTTGAGTTG+AGG | + | chr5_4:8474852-8474871 | Msa0835180:intron | 45.0% |
| AAAACCATCCAAGCCTCCAA+GGG | - | chr5_4:8475018-8475037 | None:intergenic | 45.0% | |
| TAAAACCATCCAAGCCTCCA+AGG | - | chr5_4:8475019-8475038 | None:intergenic | 45.0% | |
| ! | TTGGAGGCTTGGATGGTTTT+AGG | + | chr5_4:8475018-8475037 | Msa0835180:intron | 45.0% |
| GCTGTTGAAAGTTATCACGC+AGG | + | chr5_4:8475123-8475142 | Msa0835180:intron | 45.0% | |
| TGGCCAATAATAGACAGCAG+AGG | + | chr5_4:8475358-8475377 | Msa0835180:intron | 45.0% | |
| GAGCCTCTGCTGTCTATTAT+TGG | - | chr5_4:8475364-8475383 | None:intergenic | 45.0% | |
| CATGCAGTACGCATCATGTA+AGG | - | chr5_4:8475722-8475741 | None:intergenic | 45.0% | |
| ATGCATGTTGACAGCAACGT+AGG | + | chr5_4:8475980-8475999 | Msa0835180:intron | 45.0% | |
| ! | GCAACGTAGGCTTTTCAACT+TGG | + | chr5_4:8475993-8476012 | Msa0835180:intron | 45.0% |
| TTCTTAATGCCGTACTGCAG+CGG | + | chr5_4:8476154-8476173 | Msa0835180:intron | 45.0% | |
| ! | TTTCCTCCAAGCTTTGTGTC+TGG | + | chr5_4:8476253-8476272 | Msa0835180:intron | 45.0% |
| TTTCCAGACACAAAGCTTGG+AGG | - | chr5_4:8476259-8476278 | None:intergenic | 45.0% | |
| AGTTGAAGTGAGTGCCTGAA+AGG | - | chr5_4:8476450-8476469 | None:intergenic | 45.0% | |
| AAGAAAGGAGGACTCTCAAC+TGG | + | chr5_4:8476476-8476495 | Msa0835180:CDS | 45.0% | |
| AGAAAGGAGGACTCTCAACT+GGG | + | chr5_4:8476477-8476496 | Msa0835180:CDS | 45.0% | |
| ! | GGGTTGTATTGATCTGGAAG+AGG | - | chr5_4:8476638-8476657 | None:intergenic | 45.0% |
| GAAGCTATCGTCTTTGTGGA+TGG | - | chr5_4:8476681-8476700 | None:intergenic | 45.0% | |
| !! | GCCTGATTATAGTTCTGGCA+AGG | + | chr5_4:8476710-8476729 | Msa0835180:CDS | 45.0% |
| TTTCCTATCAGTGGCGACAA+GGG | + | chr5_4:8477107-8477126 | Msa0835180:intron | 45.0% | |
| !! | TGATTTGGTCTAGATGGTGG+AGG | - | chr5_4:8477154-8477173 | None:intergenic | 45.0% |
| CAGCAGCACTCTTCTTGATT+TGG | - | chr5_4:8477169-8477188 | None:intergenic | 45.0% | |
| !!! | CAAGAAGAGTGCTGCTGTTT+TGG | + | chr5_4:8477172-8477191 | Msa0835180:CDS | 45.0% |
| CAGAACACTATTACGGTTGG+AGG | + | chr5_4:8477221-8477240 | Msa0835180:CDS | 45.0% | |
| !! | CTAGCTTTGATCTGTGTCAG+AGG | - | chr5_4:8477263-8477282 | None:intergenic | 45.0% |
| CTCTGACACAGATCAAAGCT+AGG | + | chr5_4:8477261-8477280 | Msa0835180:CDS | 45.0% | |
| !! | AGTGCTGACTATTTCTGGTG+AGG | + | chr5_4:8477340-8477359 | Msa0835180:CDS | 45.0% |
| !! | TTCTGGTGAGGTTGATACCA+AGG | + | chr5_4:8477352-8477371 | Msa0835180:CDS | 45.0% |
| TTCCACAGATGAGCGTTTCT+AGG | + | chr5_4:8477522-8477541 | Msa0835180:three_prime_UTR | 45.0% | |
| AACCTAGAAACGCTCATCTG+TGG | - | chr5_4:8477527-8477546 | None:intergenic | 45.0% | |
| AAATGGGAAACGGAAGCCAT+AGG | - | chr5_4:8477589-8477608 | None:intergenic | 45.0% | |
| GCACTGTGCTTCACGAAACA+GGG | - | chr5_4:8472884-8472903 | None:intergenic | 50.0% | |
| TGCACTGTGCTTCACGAAAC+AGG | - | chr5_4:8472885-8472904 | None:intergenic | 50.0% | |
| ATCGAAGATGAGCAAGGGAC+CGG | + | chr5_4:8472958-8472977 | Msa0835180:exon | 50.0% | |
| CCAATATCGGAGTAGAGACC+CGG | - | chr5_4:8472980-8472999 | None:intergenic | 50.0% | |
| ACCTGGATGTGTGACATCCT+AGG | + | chr5_4:8474000-8474019 | Msa0835180:intron | 50.0% | |
| TCCTAGGATGTCACACATCC+AGG | - | chr5_4:8474004-8474023 | None:intergenic | 50.0% | |
| GTGCAACACAAGGACTTCCT+AGG | - | chr5_4:8474020-8474039 | None:intergenic | 50.0% | |
| CCTATTCCCACTAAGTGGGA+TGG | - | chr5_4:8474052-8474071 | None:intergenic | 50.0% | |
| CCATCCCACTTAGTGGGAAT+AGG | + | chr5_4:8474049-8474068 | Msa0835180:intron | 50.0% | |
| CCAAGCCTATTCCCACTAAG+TGG | - | chr5_4:8474057-8474076 | None:intergenic | 50.0% | |
| CCACTTAGTGGGAATAGGCT+TGG | + | chr5_4:8474054-8474073 | Msa0835180:intron | 50.0% | |
| CTTAGTGGGAATAGGCTTGG+TGG | + | chr5_4:8474057-8474076 | Msa0835180:intron | 50.0% | |
| TCGGTATTACCGCTTGTGCT+AGG | - | chr5_4:8474122-8474141 | None:intergenic | 50.0% | |
| ! | GTGTTGTCCTTGGTTCGAAC+CGG | + | chr5_4:8474165-8474184 | Msa0835180:intron | 50.0% |
| ! | TGTTGTCCTTGGTTCGAACC+GGG | + | chr5_4:8474166-8474185 | Msa0835180:intron | 50.0% |
| ACACACGACATGGAAGATCC+CGG | - | chr5_4:8474187-8474206 | None:intergenic | 50.0% | |
| ! | TGTAGCCGACTCAACTTGGA+TGG | - | chr5_4:8474274-8474293 | None:intergenic | 50.0% |
| TCAAAAAACAGCGCCACCCT+TGG | + | chr5_4:8474999-8475018 | Msa0835180:intron | 50.0% | |
| ATGCCAATGCGAGACTGACA+AGG | + | chr5_4:8475547-8475566 | Msa0835180:intron | 50.0% | |
| TCTTAATGCCGTACTGCAGC+GGG | + | chr5_4:8476155-8476174 | Msa0835180:intron | 50.0% | |
| AACATGAACCCGCTGCAGTA+CGG | - | chr5_4:8476166-8476185 | None:intergenic | 50.0% | |
| AAGAATGTGCTATGGTGCCC+AGG | + | chr5_4:8476349-8476368 | Msa0835180:intron | 50.0% | |
| AGAATGTGCTATGGTGCCCA+GGG | + | chr5_4:8476350-8476369 | Msa0835180:intron | 50.0% | |
| GAAAGGAGGACTCTCAACTG+GGG | + | chr5_4:8476478-8476497 | Msa0835180:CDS | 50.0% | |
| AGGTTAAGGTAGCATGGTCG+TGG | - | chr5_4:8476836-8476855 | None:intergenic | 50.0% | |
| CGACTGAGGTTAAGGTAGCA+TGG | - | chr5_4:8476842-8476861 | None:intergenic | 50.0% | |
| CAGTGTAGCGACTGAGGTTA+AGG | - | chr5_4:8476850-8476869 | None:intergenic | 50.0% | |
| TTGCTTCAGTGTAGCGACTG+AGG | - | chr5_4:8476856-8476875 | None:intergenic | 50.0% | |
| AAGGGTTGGAGAACCAACAG+TGG | - | chr5_4:8476901-8476920 | None:intergenic | 50.0% | |
| GGTTCTCCAACCCTTGCATT+TGG | + | chr5_4:8476906-8476925 | Msa0835180:CDS | 50.0% | |
| TCAGCACCAAATGCAAGGGT+TGG | - | chr5_4:8476915-8476934 | None:intergenic | 50.0% | |
| !! | AACCCTTGCATTTGGTGCTG+AGG | + | chr5_4:8476914-8476933 | Msa0835180:CDS | 50.0% |
| TGCCTCAGCACCAAATGCAA+GGG | - | chr5_4:8476919-8476938 | None:intergenic | 50.0% | |
| CTTTCCTATCAGTGGCGACA+AGG | + | chr5_4:8477106-8477125 | Msa0835180:intron | 50.0% | |
| GCAATGGCCAACCCAAACTT+GGG | - | chr5_4:8477392-8477411 | None:intergenic | 50.0% | |
| AGCAATGGCCAACCCAAACT+TGG | - | chr5_4:8477393-8477412 | None:intergenic | 50.0% | |
| !! | TGGAAGTCTTGTTCTCCGAG+AGG | + | chr5_4:8477661-8477680 | Msa0835180:three_prime_UTR | 50.0% |
| GTGCTTCACGAAACAGGGTG+TGG | - | chr5_4:8472879-8472898 | None:intergenic | 55.0% | |
| TCGAAGATGAGCAAGGGACC+GGG | + | chr5_4:8472959-8472978 | Msa0835180:exon | 55.0% | |
| CCGGGTCTCTACTCCGATAT+TGG | + | chr5_4:8472977-8472996 | Msa0835180:CDS | 55.0% | |
| !! | CGGTGCTACATAGCCGACAA+CGG | - | chr5_4:8473317-8473336 | None:intergenic | 55.0% |
| CAACATAGACAGGGCGACAC+CGG | - | chr5_4:8473798-8473817 | None:intergenic | 55.0% | |
| TCCTGCCCATCCCACTTAGT+GGG | + | chr5_4:8474043-8474062 | Msa0835180:intron | 55.0% | |
| CTCGTAAGGCCTAGCACAAG+CGG | + | chr5_4:8474110-8474129 | Msa0835180:intron | 55.0% | |
| ! | GAAGATCCCGGTTCGAACCA+AGG | - | chr5_4:8474175-8474194 | None:intergenic | 55.0% |
| AAAAACAGCGCCACCCTTGG+AGG | + | chr5_4:8475002-8475021 | Msa0835180:intron | 55.0% | |
| GCACCTTGTCAGTCTCGCAT+TGG | - | chr5_4:8475553-8475572 | None:intergenic | 55.0% | |
| ! | CTGCAGCGGGTTCATGTTGA+AGG | + | chr5_4:8476168-8476187 | Msa0835180:intron | 55.0% |
| ! | CAGCGGGTTCATGTTGAAGG+TGG | + | chr5_4:8476171-8476190 | Msa0835180:intron | 55.0% |
| AGGACTCTCAACTGGGGATG+TGG | + | chr5_4:8476484-8476503 | Msa0835180:CDS | 55.0% | |
| CTGCCTCAGCACCAAATGCA+AGG | - | chr5_4:8476920-8476939 | None:intergenic | 55.0% | |
| !! | CTTGCATTTGGTGCTGAGGC+AGG | + | chr5_4:8476918-8476937 | Msa0835180:CDS | 55.0% |
| TCACCCTTGTCGCCACTGAT+AGG | - | chr5_4:8477113-8477132 | None:intergenic | 55.0% | |
| TTGGGAAGAGCTCGTGCTGT+AGG | - | chr5_4:8477316-8477335 | None:intergenic | 55.0% | |
| !! | TGAGGTTGATACCAAGGCCC+TGG | + | chr5_4:8477358-8477377 | Msa0835180:CDS | 55.0% |
| !!! | GGGTTTTTTCTCCAGGGCCT+TGG | - | chr5_4:8477372-8477391 | None:intergenic | 55.0% |
| !! | TTTTGGTGGCCCTTGAAGGG+AGG | + | chr5_4:8477486-8477505 | Msa0835180:three_prime_UTR | 55.0% |
| ! | TTTGGTGGCCCTTGAAGGGA+GGG | + | chr5_4:8477487-8477506 | Msa0835180:three_prime_UTR | 55.0% |
| ! | GGCAGGAGAGGTGCAACACA+AGG | - | chr5_4:8474030-8474049 | None:intergenic | 60.0% |
| CTAAGTGGGATGGGCAGGAG+AGG | - | chr5_4:8474042-8474061 | None:intergenic | 60.0% | |
| CTCCTGCCCATCCCACTTAG+TGG | + | chr5_4:8474042-8474061 | Msa0835180:intron | 60.0% | |
| TCCCACTAAGTGGGATGGGC+AGG | - | chr5_4:8474047-8474066 | None:intergenic | 60.0% | |
| ACCATCCAAGCCTCCAAGGG+TGG | - | chr5_4:8475015-8475034 | None:intergenic | 60.0% | |
| CTCAGCTGAGTCGTGACCCT+GGG | - | chr5_4:8476369-8476388 | None:intergenic | 60.0% | |
| TCTCAGCTGAGTCGTGACCC+TGG | - | chr5_4:8476370-8476389 | None:intergenic | 60.0% | |
| CTCTCAACTGGGGATGTGGC+AGG | + | chr5_4:8476488-8476507 | Msa0835180:CDS | 60.0% | |
| GCCACCCTTGGAGGCTTGGA+TGG | + | chr5_4:8475011-8475030 | Msa0835180:intron | 65.0% | |
| CAGCGCCACCCTTGGAGGCT+TGG | + | chr5_4:8475007-8475026 | Msa0835180:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8472839 | 8477730 | 8472839 | ID=Msa0835180;Name=Msa0835180 |
| chr5_4 | mRNA | 8472839 | 8477730 | 8472839 | ID=Msa0835180-mRNA-1;Parent=Msa0835180;Name=Msa0835180-mRNA-1;_AED=0.30;_eAED=0.30;_QI=126|1|1|1|1|1|6|306|276 |
| chr5_4 | exon | 8472839 | 8473013 | 8472839 | ID=Msa0835180-mRNA-1:exon:3733;Parent=Msa0835180-mRNA-1 |
| chr5_4 | exon | 8473097 | 8473164 | 8473097 | ID=Msa0835180-mRNA-1:exon:3734;Parent=Msa0835180-mRNA-1 |
| chr5_4 | exon | 8476455 | 8476565 | 8476455 | ID=Msa0835180-mRNA-1:exon:3735;Parent=Msa0835180-mRNA-1 |
| chr5_4 | exon | 8476645 | 8476731 | 8476645 | ID=Msa0835180-mRNA-1:exon:3736;Parent=Msa0835180-mRNA-1 |
| chr5_4 | exon | 8476816 | 8477024 | 8476816 | ID=Msa0835180-mRNA-1:exon:3737;Parent=Msa0835180-mRNA-1 |
| chr5_4 | exon | 8477118 | 8477730 | 8477118 | ID=Msa0835180-mRNA-1:exon:3738;Parent=Msa0835180-mRNA-1 |
| chr5_4 | five_prime_UTR | 8472839 | 8472964 | 8472839 | ID=Msa0835180-mRNA-1:five_prime_utr;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8472965 | 8473013 | 8472965 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8473097 | 8473164 | 8473097 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8476455 | 8476565 | 8476455 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8476645 | 8476731 | 8476645 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8476816 | 8477024 | 8476816 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | CDS | 8477118 | 8477424 | 8477118 | ID=Msa0835180-mRNA-1:cds;Parent=Msa0835180-mRNA-1 |
| chr5_4 | three_prime_UTR | 8477425 | 8477730 | 8477425 | ID=Msa0835180-mRNA-1:three_prime_utr;Parent=Msa0835180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
