Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756160 | XP_003611587.1 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756160 | sp|Q9FJX3|VDAC2_ARATH | 66.667 | 276 | 92 | 0 | 1 | 276 | 1 | 276 | 1.72e-139 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756160 | G7K2J4 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618020 | Msa0756160 | 0.836847 | 7.359202e-57 | -8.615850e-47 |
| Msa0657060 | Msa0756160 | 0.815350 | 9.671924e-52 | -8.615850e-47 |
| Msa0701040 | Msa0756160 | 0.832709 | 8.098321e-56 | -8.615850e-47 |
| Msa0713900 | Msa0756160 | 0.924116 | 1.081498e-89 | -8.615850e-47 |
| Msa0756160 | Msa0835180 | 0.942806 | 3.740080e-102 | -8.615850e-47 |
| Msa0756160 | Msa1221780 | 0.800705 | 1.271558e-48 | -8.615850e-47 |
| Msa0756160 | Msa1358720 | 0.821527 | 3.850115e-53 | -8.615850e-47 |
| Msa0564920 | Msa0756160 | 0.825975 | 3.496930e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756160 | MtrunA17_Chr5g0401201 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Msa0756160 | MtrunA17_Chr1g0152591 | 56.364 | 275 | 120 | 0 | 2 | 276 | 3 | 277 | 2.07e-110 | 320 |
| Msa0756160 | MtrunA17_Chr6g0452811 | 48.921 | 278 | 140 | 1 | 1 | 276 | 1 | 278 | 6.51e-92 | 273 |
| Msa0756160 | MtrunA17_Chr7g0216561 | 49.818 | 275 | 138 | 0 | 2 | 276 | 3 | 277 | 1.68e-90 | 269 |
| Msa0756160 | MtrunA17_Chr8g0362621 | 41.304 | 276 | 162 | 0 | 1 | 276 | 1 | 276 | 1.37e-76 | 234 |
| Msa0756160 | MtrunA17_Chr4g0072511 | 43.011 | 279 | 156 | 2 | 1 | 276 | 1 | 279 | 5.57e-75 | 230 |
| Msa0756160 | MtrunA17_Chr4g0060181 | 26.148 | 283 | 163 | 5 | 1 | 276 | 1 | 244 | 1.10e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0756160 | AT5G67500.3 | 66.667 | 276 | 92 | 0 | 1 | 276 | 1 | 276 | 1.74e-140 | 396 |
| Msa0756160 | AT5G67500.2 | 60.726 | 303 | 92 | 1 | 1 | 276 | 1 | 303 | 1.17e-134 | 383 |
| Msa0756160 | AT5G67500.1 | 66.292 | 267 | 90 | 0 | 1 | 267 | 1 | 267 | 2.56e-134 | 382 |
| Msa0756160 | AT5G15090.1 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 1.35e-89 | 267 |
| Msa0756160 | AT5G15090.2 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 1.35e-89 | 267 |
| Msa0756160 | AT3G01280.1 | 48.913 | 276 | 141 | 0 | 1 | 276 | 1 | 276 | 2.27e-88 | 264 |
| Msa0756160 | AT5G57490.1 | 46.014 | 276 | 147 | 1 | 1 | 276 | 1 | 274 | 5.09e-83 | 251 |
| Msa0756160 | AT3G49920.1 | 48.188 | 276 | 93 | 3 | 1 | 276 | 1 | 226 | 1.83e-81 | 245 |
| Msa0756160 | AT3G49920.2 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.77e-28 | 106 |
| Msa0756160 | AT3G49920.4 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.77e-28 | 106 |
| Msa0756160 | AT3G49920.3 | 67.123 | 73 | 24 | 0 | 1 | 73 | 1 | 73 | 3.02e-28 | 104 |
Find 90 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATTAGTTTCACGAAAT+TGG | 0.171691 | 5_2:-10213482 | Msa0756160:CDS |
| AAGTCAGTGCTGACTATTTC+TGG | 0.215709 | 5_2:-10213127 | Msa0756160:CDS |
| TCTTCTTGATTTGGTCTAGA+TGG | 0.272788 | 5_2:+10213305 | None:intergenic |
| CTGATTTGTTGAGAACTTTC+GGG | 0.283303 | 5_2:+10213261 | None:intergenic |
| CAGCAGCACTCTTCTTGATT+TGG | 0.283867 | 5_2:+10213296 | None:intergenic |
| TCTGATTTGTTGAGAACTTT+CGG | 0.295502 | 5_2:+10213260 | None:intergenic |
| TTCCACAGATGAGCGTTTCT+AGG | 0.313600 | 5_2:-10212940 | Msa0756160:three_prime_UTR |
| AAGCTGCCTGATTATAGTTC+TGG | 0.319469 | 5_2:-10213757 | Msa0756160:CDS |
| CCGGGTCTCTACTCCGATAT+TGG | 0.330823 | 5_2:-10217482 | Msa0756160:CDS |
| GTAGTAGATATTCTGATATA+TGG | 0.350500 | 5_2:-10212821 | Msa0756160:three_prime_UTR |
| AATATGAAAATAGAACTTAA+AGG | 0.369433 | 5_2:+10212757 | None:intergenic |
| TGCACTGTGCTTCACGAAAC+AGG | 0.370007 | 5_2:+10217577 | None:intergenic |
| AAGAAAGGAGGACTCTCAAC+TGG | 0.374633 | 5_2:-10213986 | Msa0756160:CDS |
| TTTGGCTTTCTTGCCAATAT+CGG | 0.377017 | 5_2:+10217469 | None:intergenic |
| TCGTCTTTGTGGATGGAAAA+AGG | 0.380002 | 5_2:+10213791 | None:intergenic |
| GGTTCTCCAACCCTTGCATT+TGG | 0.392286 | 5_2:-10213556 | Msa0756160:CDS |
| AATTGAAGCTATCGTCTTTG+TGG | 0.392722 | 5_2:+10213780 | None:intergenic |
| GTTTCTAGGTTCTTTCTGAT+TGG | 0.394439 | 5_2:-10212926 | Msa0756160:three_prime_UTR |
| GTGGCAGAAACATCAAAGAT+AGG | 0.400234 | 5_2:+10213583 | None:intergenic |
| ATTATTCTACCCTCCCTTCA+AGG | 0.401275 | 5_2:+10212966 | None:intergenic |
| CAGTGTAGCGACTGAGGTTA+AGG | 0.410879 | 5_2:+10213615 | None:intergenic |
| GAAATAGTCAGCACTGACTT+TGG | 0.413358 | 5_2:+10213130 | None:intergenic |
| CAATAACTTGAATCAACCTA+TGG | 0.418971 | 5_2:-10212892 | Msa0756160:three_prime_UTR |
| AAATAGTCAGCACTGACTTT+GGG | 0.425846 | 5_2:+10213131 | None:intergenic |
| AGCAATGGCCAACCCAAACT+TGG | 0.435980 | 5_2:+10213072 | None:intergenic |
| CTTGCATTTGGTGCTGAGGC+AGG | 0.440987 | 5_2:-10213544 | Msa0756160:CDS |
| ACTTCAACTGCTTTGAAGAA+AGG | 0.441282 | 5_2:-10214001 | Msa0756160:CDS |
| AACAAATCAGAACACTATTA+CGG | 0.464512 | 5_2:-10213248 | Msa0756160:CDS |
| GTTTCATCTTACAGCACTAC+TGG | 0.464789 | 5_2:-10217327 | Msa0756160:CDS |
| TCAACAATCAAGGAAAGGTT+GGG | 0.467034 | 5_2:-10213177 | Msa0756160:CDS |
| GCAGGCTATGATACTAAATC+TGG | 0.479364 | 5_2:-10213526 | Msa0756160:CDS |
| ATCGAAGATGAGCAAGGGAC+CGG | 0.481251 | 5_2:-10217501 | Msa0756160:exon |
| TCTTGATTTGGTCTAGATGG+TGG | 0.484846 | 5_2:+10213308 | None:intergenic |
| TTTGATGTTTCTGCCACTGT+TGG | 0.487886 | 5_2:-10213577 | Msa0756160:CDS |
| TTTGGTGGCCCTTGAAGGGA+GGG | 0.490932 | 5_2:-10212975 | Msa0756160:three_prime_UTR |
| TGGCAGAAACATCAAAGATA+GGG | 0.491347 | 5_2:+10213584 | None:intergenic |
| AACCCTTGCATTTGGTGCTG+AGG | 0.491987 | 5_2:-10213548 | Msa0756160:CDS |
| TTCAACAATCAAGGAAAGGT+TGG | 0.493974 | 5_2:-10213178 | Msa0756160:CDS |
| AGGACTCTCAACTGGGGATG+TGG | 0.494637 | 5_2:-10213978 | Msa0756160:CDS |
| CTTTCCTATCAGTGGCGACA+AGG | 0.504369 | 5_2:-10213356 | Msa0756160:intron |
| AAAGCTAGGTTCAACAATCA+AGG | 0.508554 | 5_2:-10213187 | Msa0756160:CDS |
| CTCTCAACTGGGGATGTGGC+AGG | 0.509688 | 5_2:-10213974 | Msa0756160:CDS |
| CAAGAAGAGTGCTGCTGTTG+TGG | 0.509776 | 5_2:-10213290 | Msa0756160:CDS |
| TACAATGTAAGAAGCAAAGC+AGG | 0.516555 | 5_2:+10212841 | None:intergenic |
| ACCTTGCCAGAACTATAATC+AGG | 0.517672 | 5_2:+10213751 | None:intergenic |
| AAGGTAAAACACAATAGATA+AGG | 0.519952 | 5_2:+10212776 | None:intergenic |
| AGTAGTGCTGTAAGATGAAA+CGG | 0.520738 | 5_2:+10217329 | None:intergenic |
| TGATTTGGTCTAGATGGTGG+AGG | 0.521733 | 5_2:+10213311 | None:intergenic |
| GAAGCTATCGTCTTTGTGGA+TGG | 0.527003 | 5_2:+10213784 | None:intergenic |
| TGAGGTTGATACCAAGGCCC+TGG | 0.529736 | 5_2:-10213104 | Msa0756160:CDS |
| TTATTCTACCCTCCCTTCAA+GGG | 0.531937 | 5_2:+10212967 | None:intergenic |
| CAGAACACTATTACGGTTGG+AGG | 0.533154 | 5_2:-10213241 | Msa0756160:CDS |
| TTGGGAAGAGCTCGTGCTGT+AGG | 0.540312 | 5_2:+10213149 | None:intergenic |
| TCTAAAATCGAAGATGAGCA+AGG | 0.548154 | 5_2:-10217507 | Msa0756160:exon |
| CTGCCTCAGCACCAAATGCA+AGG | 0.548233 | 5_2:+10213545 | None:intergenic |
| AATCAGAACACTATTACGGT+TGG | 0.550635 | 5_2:-10213244 | Msa0756160:CDS |
| AGGTTAAGGTAGCATGGTCG+TGG | 0.557344 | 5_2:+10213629 | None:intergenic |
| TCAGCACCAAATGCAAGGGT+TGG | 0.562271 | 5_2:+10213550 | None:intergenic |
| CCAATATCGGAGTAGAGACC+CGG | 0.566055 | 5_2:+10217482 | None:intergenic |
| GCAATGGCCAACCCAAACTT+GGG | 0.566984 | 5_2:+10213073 | None:intergenic |
| ACTTCAAGGTTTGAGAGCAA+TGG | 0.567035 | 5_2:+10213057 | None:intergenic |
| AGAAAGGAGGACTCTCAACT+GGG | 0.567353 | 5_2:-10213985 | Msa0756160:CDS |
| TTCTGGTGAGGTTGATACCA+AGG | 0.578817 | 5_2:-10213110 | Msa0756160:CDS |
| TCGAAGATGAGCAAGGGACC+GGG | 0.581110 | 5_2:-10217500 | Msa0756160:exon |
| AAATGGGAAACGGAAGCCAT+AGG | 0.584624 | 5_2:+10212876 | None:intergenic |
| CTAGCTTTGATCTGTGTCAG+AGG | 0.591430 | 5_2:+10213202 | None:intergenic |
| ACAATAGATAAGGATCCTCT+CGG | 0.592510 | 5_2:+10212786 | None:intergenic |
| AGTGCTGACTATTTCTGGTG+AGG | 0.600743 | 5_2:-10213122 | Msa0756160:CDS |
| AACCTAGAAACGCTCATCTG+TGG | 0.604343 | 5_2:+10212938 | None:intergenic |
| CAACAATCAAGGAAAGGTTG+GGG | 0.608378 | 5_2:-10213176 | Msa0756160:CDS |
| TGCCTCAGCACCAAATGCAA+GGG | 0.611427 | 5_2:+10213546 | None:intergenic |
| TAGGTTCAACAATCAAGGAA+AGG | 0.612340 | 5_2:-10213182 | Msa0756160:CDS |
| TCAACTGCTTTGAAGAAAGG+AGG | 0.613940 | 5_2:-10213998 | Msa0756160:CDS |
| CGACTGAGGTTAAGGTAGCA+TGG | 0.618567 | 5_2:+10213623 | None:intergenic |
| TTGCTTCAGTGTAGCGACTG+AGG | 0.620374 | 5_2:+10213609 | None:intergenic |
| GCCTGATTATAGTTCTGGCA+AGG | 0.623753 | 5_2:-10213752 | Msa0756160:intron |
| GGCAGAAACATCAAAGATAG+GGG | 0.624754 | 5_2:+10213585 | None:intergenic |
| TTTCCTATCAGTGGCGACAA+GGG | 0.625564 | 5_2:-10213355 | Msa0756160:intron |
| CTAAAATCGAAGATGAGCAA+GGG | 0.627918 | 5_2:-10217506 | Msa0756160:exon |
| CTCTGACACAGATCAAAGCT+AGG | 0.632557 | 5_2:-10213201 | Msa0756160:CDS |
| GTGCTTCACGAAACAGGGTG+TGG | 0.632752 | 5_2:+10217583 | None:intergenic |
| TAGCTTTGATCTGTGTCAGA+GGG | 0.634327 | 5_2:+10213203 | None:intergenic |
| TGAAACGGTAAGCTTCTGAT+CGG | 0.639844 | 5_2:+10217344 | None:intergenic |
| GATATTGGCAAGAAAGCCAA+AGG | 0.654162 | 5_2:-10217467 | Msa0756160:intron |
| GCACTGTGCTTCACGAAACA+GGG | 0.655155 | 5_2:+10217578 | None:intergenic |
| AGAACACTATTACGGTTGGA+GGG | 0.671397 | 5_2:-10213240 | Msa0756160:CDS |
| AACAATCAAGGAAAGGTTGG+GGG | 0.680087 | 5_2:-10213175 | Msa0756160:CDS |
| TGGAAGTCTTGTTCTCCGAG+AGG | 0.705406 | 5_2:-10212801 | Msa0756160:three_prime_UTR |
| GAAAGGAGGACTCTCAACTG+GGG | 0.714176 | 5_2:-10213984 | Msa0756160:CDS |
| AAGGGTTGGAGAACCAACAG+TGG | 0.718653 | 5_2:+10213564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATCAGAATAAT+TGG | + | chr5_2:10212992-10213011 | None:intergenic | 10.0% |
| !! | TTATTAATTATAAATTGTAG+TGG | + | chr5_2:10213113-10213132 | None:intergenic | 10.0% |
| !!! | ATTTTCAAAAAAGAATTAAT+GGG | + | chr5_2:10213697-10213716 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAAAAGAATTAA+TGG | + | chr5_2:10213698-10213717 | None:intergenic | 10.0% |
| !! | ATACATTAAAATAAAAAGAT+AGG | + | chr5_2:10213831-10213850 | None:intergenic | 10.0% |
| !!! | AAAGTGTTATAATAAAATAA+AGG | + | chr5_2:10214737-10214756 | None:intergenic | 10.0% |
| !! | ATGTAGAATATAATTTAAAA+AGG | - | chr5_2:10215007-10215026 | Msa0756160:intron | 10.0% |
| !! | TGTAGAATATAATTTAAAAA+GGG | - | chr5_2:10215008-10215027 | Msa0756160:intron | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | + | chr5_2:10215785-10215804 | None:intergenic | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | + | chr5_2:10215786-10215805 | None:intergenic | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | + | chr5_2:10215785-10215804 | None:intergenic | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | + | chr5_2:10215786-10215805 | None:intergenic | 10.0% |
| !!! | ACAGTTTTATTTTTTTAATA+CGG | - | chr5_2:10216131-10216150 | Msa0756160:intron | 10.0% |
| !!! | ACAATAACTCTTTTTATATA+GGG | + | chr5_2:10213536-10213555 | None:intergenic | 15.0% |
| !!! | TTTTCAAAAAAGAATTAATG+GGG | + | chr5_2:10213696-10213715 | None:intergenic | 15.0% |
| !! | AGAGAAAAAATAATAAAAGA+GGG | + | chr5_2:10214316-10214335 | None:intergenic | 15.0% |
| !!! | TTTACATTTTATTACTTACA+GGG | + | chr5_2:10214487-10214506 | None:intergenic | 15.0% |
| !!! | ATTTACATTTTATTACTTAC+AGG | + | chr5_2:10214488-10214507 | None:intergenic | 15.0% |
| !! | GTAGAATATAATTTAAAAAG+GGG | - | chr5_2:10215009-10215028 | Msa0756160:intron | 15.0% |
| !! | TAGAATATAATTTAAAAAGG+GGG | - | chr5_2:10215010-10215029 | Msa0756160:intron | 15.0% |
| !!! | AGCTTTATAAATTAATTATC+TGG | - | chr5_2:10215218-10215237 | Msa0756160:intron | 15.0% |
| !!! | TATTTTGAATTCATAAATGT+TGG | - | chr5_2:10215534-10215553 | Msa0756160:intron | 15.0% |
| !!! | TACATTTTCATAATTCATTT+TGG | - | chr5_2:10215826-10215845 | Msa0756160:intron | 15.0% |
| !!! | CAGTTTTATTTTTTTAATAC+GGG | - | chr5_2:10216132-10216151 | Msa0756160:intron | 15.0% |
| !!! | AGTTTTATTTTTTTAATACG+GGG | - | chr5_2:10216133-10216152 | Msa0756160:intron | 15.0% |
| !! | AATATGAAAATAGAACTTAA+AGG | + | chr5_2:10217639-10217658 | None:intergenic | 15.0% |
| !! | CTTATGTTCAATTAATTCTT+GGG | - | chr5_2:10213293-10213312 | Msa0756160:CDS | 20.0% |
| !! | TTATGTTCAATTAATTCTTG+GGG | - | chr5_2:10213294-10213313 | Msa0756160:CDS | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | + | chr5_2:10213371-10213390 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr5_2:10213372-10213391 | None:intergenic | 20.0% |
| !!! | AACGAAATATTTTGATATCA+AGG | + | chr5_2:10213432-10213451 | None:intergenic | 20.0% |
| !!! | CACAATAACTCTTTTTATAT+AGG | + | chr5_2:10213537-10213556 | None:intergenic | 20.0% |
| !!! | TTAGAATTTTGATACATTGA+AGG | - | chr5_2:10213623-10213642 | Msa0756160:CDS | 20.0% |
| !!! | TCTTTTTTGAAAATTTTGAC+CGG | - | chr5_2:10213703-10213722 | Msa0756160:intron | 20.0% |
| !! | GAGAGAAAAAATAATAAAAG+AGG | + | chr5_2:10214317-10214336 | None:intergenic | 20.0% |
| !! | ATAAAATGTAAATGCAATGT+AGG | - | chr5_2:10214495-10214514 | Msa0756160:intron | 20.0% |
| !!! | TACTTTTGTGAATTTAGTTT+TGG | - | chr5_2:10214601-10214620 | Msa0756160:intron | 20.0% |
| !! | TAAACAAAATAGCAATATCT+TGG | - | chr5_2:10214762-10214781 | Msa0756160:intron | 20.0% |
| !! | AGAATATAATTTAAAAAGGG+GGG | - | chr5_2:10215011-10215030 | Msa0756160:intron | 20.0% |
| !! | TAAGAAAAATCACAAATCAA+TGG | - | chr5_2:10215266-10215285 | Msa0756160:intron | 20.0% |
| !!! | ATGATCAATTGATTTATCTA+AGG | - | chr5_2:10215505-10215524 | Msa0756160:intron | 20.0% |
| !!! | TGATCAATTGATTTATCTAA+GGG | - | chr5_2:10215506-10215525 | Msa0756160:intron | 20.0% |
| !! | ATGCTTATTACCTAAAATTT+GGG | - | chr5_2:10215667-10215686 | Msa0756160:intron | 20.0% |
| !!! | TACTTATTGGCTAAAAAATT+AGG | - | chr5_2:10215877-10215896 | Msa0756160:intron | 20.0% |
| !!! | ACTTATTGGCTAAAAAATTA+GGG | - | chr5_2:10215878-10215897 | Msa0756160:intron | 20.0% |
| !! | ATCTAATGTTCATTTCAATA+TGG | - | chr5_2:10216349-10216368 | Msa0756160:intron | 20.0% |
| !! | AAAAATAAAGGAAAACTTCA+AGG | + | chr5_2:10217353-10217372 | None:intergenic | 20.0% |
| !!! | ATCACACGTTTTAAAAATAA+AGG | + | chr5_2:10217365-10217384 | None:intergenic | 20.0% |
| !!! | TATTCAATACTCCATTTTTT+TGG | - | chr5_2:10217400-10217419 | Msa0756160:intron | 20.0% |
| !! | ATTTAATCAAAAATGGGAAA+CGG | + | chr5_2:10217530-10217549 | None:intergenic | 20.0% |
| !! | CAGGAAATTTAATCAAAAAT+GGG | + | chr5_2:10217536-10217555 | None:intergenic | 20.0% |
| !!! | TGTTTTAGATCTTTTGACAA+AGG | - | chr5_2:10213017-10213036 | Msa0756160:three_prime_UTR | 25.0% |
| ! | GCTTATGTTCAATTAATTCT+TGG | - | chr5_2:10213292-10213311 | Msa0756160:CDS | 25.0% |
| ! | ACAATAAGTAAGTACGTATA+AGG | + | chr5_2:10213504-10213523 | None:intergenic | 25.0% |
| ! | AAGAGTTATTGTGAGTATTA+AGG | - | chr5_2:10213544-10213563 | Msa0756160:CDS | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+GGG | - | chr5_2:10213545-10213564 | Msa0756160:CDS | 25.0% |
| ! | GAGTATTAAGGGATTATTTA+AGG | - | chr5_2:10213556-10213575 | Msa0756160:CDS | 25.0% |
| !!! | TTACGATGTTTTTAAAGGAA+CGG | + | chr5_2:10213801-10213820 | None:intergenic | 25.0% |
| !!! | ACTGTTTACGATGTTTTTAA+AGG | + | chr5_2:10213806-10213825 | None:intergenic | 25.0% |
| ! | TTATGTACAGACTAAAATAC+TGG | + | chr5_2:10214396-10214415 | None:intergenic | 25.0% |
| !! | CTGATTCATATTTTATTACG+TGG | - | chr5_2:10214419-10214438 | Msa0756160:intron | 25.0% |
| ! | AATACTATATGAACAATGTC+TGG | - | chr5_2:10214806-10214825 | Msa0756160:intron | 25.0% |
| ! | ATACTATATGAACAATGTCT+GGG | - | chr5_2:10214807-10214826 | Msa0756160:intron | 25.0% |
| ! | AAAAGAAACTGAATGTTTAG+AGG | - | chr5_2:10214836-10214855 | Msa0756160:intron | 25.0% |
| !!! | TTTTCATGTCTGAAATACTT+GGG | - | chr5_2:10215082-10215101 | Msa0756160:intron | 25.0% |
| ! | AAACGATTTATGAGCATAAA+TGG | + | chr5_2:10215127-10215146 | None:intergenic | 25.0% |
| !! | TACATTTCCATAATTCCTTT+TGG | - | chr5_2:10215617-10215636 | Msa0756160:intron | 25.0% |
| ! | AGAAATTCCAAAAGGAATTA+TGG | + | chr5_2:10215627-10215646 | None:intergenic | 25.0% |
| ! | CATGCTTATTACCTAAAATT+TGG | - | chr5_2:10215666-10215685 | Msa0756160:intron | 25.0% |
| ! | TGCTTATTACCTAAAATTTG+GGG | - | chr5_2:10215668-10215687 | Msa0756160:intron | 25.0% |
| ! | AAAAAGTAAGAAAGGGATAA+AGG | + | chr5_2:10215778-10215797 | None:intergenic | 25.0% |
| !! | TTGTACGTTATTGATGATTA+TGG | + | chr5_2:10216044-10216063 | None:intergenic | 25.0% |
| ! | ATAATCATCAATAACGTACA+AGG | - | chr5_2:10216043-10216062 | Msa0756160:intron | 25.0% |
| !!! | TTATTTTTTTAATACGGGGA+TGG | - | chr5_2:10216137-10216156 | Msa0756160:intron | 25.0% |
| !! | GTTCTTTTTAAATTCATGTC+TGG | - | chr5_2:10216216-10216235 | Msa0756160:intron | 25.0% |
| !!! | CTCAATTTTGACATCAATAA+GGG | + | chr5_2:10216465-10216484 | None:intergenic | 25.0% |
| !!! | TCTCAATTTTGACATCAATA+AGG | + | chr5_2:10216466-10216485 | None:intergenic | 25.0% |
| !! | GTGATTTTTCATCTTTTGTA+TGG | - | chr5_2:10216667-10216686 | Msa0756160:intron | 25.0% |
| !! | AGTTTTACTAAATACAACAC+TGG | - | chr5_2:10216891-10216910 | Msa0756160:intron | 25.0% |
| !! | GTTTTACTAAATACAACACT+GGG | - | chr5_2:10216892-10216911 | Msa0756160:intron | 25.0% |
| ! | AACAAATCAGAACACTATTA+CGG | - | chr5_2:10217145-10217164 | Msa0756160:intron | 25.0% |
| ! | GCAGGAAATTTAATCAAAAA+TGG | + | chr5_2:10217537-10217556 | None:intergenic | 25.0% |
| ! | GTAGTAGATATTCTGATATA+TGG | - | chr5_2:10217572-10217591 | Msa0756160:five_prime_UTR | 25.0% |
| ! | AAGGTAAAACACAATAGATA+AGG | + | chr5_2:10217620-10217639 | None:intergenic | 25.0% |
| TAATTGCATTATCAGATGTC+AGG | - | chr5_2:10213161-10213180 | Msa0756160:CDS | 30.0% | |
| !! | ATTAATTTGTTAGCCGTTGT+CGG | - | chr5_2:10213229-10213248 | Msa0756160:CDS | 30.0% |
| ! | TAATCACACATCAGAAGTAT+CGG | + | chr5_2:10213265-10213284 | None:intergenic | 30.0% |
| ACTAACAAAATGCACAATCA+GGG | + | chr5_2:10213400-10213419 | None:intergenic | 30.0% | |
| ACTAACAAAGTAGACAATCA+GGG | - | chr5_2:10213594-10213613 | Msa0756160:CDS | 30.0% | |
| ! | TAATGGGGTAATAGTCATTT+TGG | + | chr5_2:10213681-10213700 | None:intergenic | 30.0% |
| TATGAAGCTTAGATATAGAC+AGG | + | chr5_2:10213751-10213770 | None:intergenic | 30.0% | |
| CAACTTGGATGGATAAAATT+TGG | + | chr5_2:10214190-10214209 | None:intergenic | 30.0% | |
| ! | TGTTTTGTCTATAGACAAAG+CGG | + | chr5_2:10214256-10214275 | None:intergenic | 30.0% |
| AATAAACATCAGCCTTAAGA+AGG | + | chr5_2:10214448-10214467 | None:intergenic | 30.0% | |
| ! | TTCTGCATAAACTTGTTTCA+CGG | - | chr5_2:10214573-10214592 | Msa0756160:intron | 30.0% |
| ATTCTGTATAAGTGCGATAA+TGG | + | chr5_2:10214710-10214729 | None:intergenic | 30.0% | |
| !! | GTTTTCATGTCTGAAATACT+TGG | - | chr5_2:10215081-10215100 | Msa0756160:intron | 30.0% |
| GGAATTATGGAAATGTACAA+TGG | + | chr5_2:10215614-10215633 | None:intergenic | 30.0% | |
| ATGTAAGGAGAAATTCCAAA+AGG | + | chr5_2:10215635-10215654 | None:intergenic | 30.0% | |
| CATAGCACATTCTTAGTATT+TGG | + | chr5_2:10216274-10216293 | None:intergenic | 30.0% | |
| CAAATACTAAGAATGTGCTA+TGG | - | chr5_2:10216272-10216291 | Msa0756160:intron | 30.0% | |
| CTTAAGTAAATCATCTCATG+TGG | - | chr5_2:10216538-10216557 | Msa0756160:intron | 30.0% | |
| GAGATTTGTAACAGAAATCT+TGG | + | chr5_2:10216976-10216995 | None:intergenic | 30.0% | |
| TTTCTGTTACAAATCTCTAG+CGG | - | chr5_2:10216979-10216998 | Msa0756160:intron | 30.0% | |
| !! | TCTGATTTGTTGAGAACTTT+CGG | + | chr5_2:10217136-10217155 | None:intergenic | 30.0% |
| !!! | TCAATACTCCATTTTTTTGG+TGG | - | chr5_2:10217403-10217422 | Msa0756160:intron | 30.0% |
| CAATAACTTGAATCAACCTA+TGG | - | chr5_2:10217501-10217520 | Msa0756160:exon | 30.0% | |
| ! | TCTAAAATCGAAGATGAGCA+AGG | - | chr5_2:10212886-10212905 | Msa0756160:three_prime_UTR | 35.0% |
| CTAAAATCGAAGATGAGCAA+GGG | - | chr5_2:10212887-10212906 | Msa0756160:three_prime_UTR | 35.0% | |
| !! | TTTGGCTTTCTTGCCAATAT+CGG | + | chr5_2:10212927-10212946 | None:intergenic | 35.0% |
| ! | GAATCGATTCAATTCACCTT+TGG | + | chr5_2:10212945-10212964 | None:intergenic | 35.0% |
| AGTAGTGCTGTAAGATGAAA+CGG | + | chr5_2:10213067-10213086 | None:intergenic | 35.0% | |
| ATTATCAGATGTCAGGTTAC+TGG | - | chr5_2:10213168-10213187 | Msa0756160:CDS | 35.0% | |
| ATTCATTCGTTCCTCATTCA+GGG | + | chr5_2:10213336-10213355 | None:intergenic | 35.0% | |
| TATTCATTCGTTCCTCATTC+AGG | + | chr5_2:10213337-10213356 | None:intergenic | 35.0% | |
| GACTAACAAAATGCACAATC+AGG | + | chr5_2:10213401-10213420 | None:intergenic | 35.0% | |
| GACTAACAAAGTAGACAATC+AGG | - | chr5_2:10213593-10213612 | Msa0756160:CDS | 35.0% | |
| GATATTCAGCCTAACAATGT+CGG | + | chr5_2:10214068-10214087 | None:intergenic | 35.0% | |
| ! | AATATCTTTTGTGCTCTCCT+TGG | - | chr5_2:10214082-10214101 | Msa0756160:intron | 35.0% |
| AAACAAACTAACACACGACA+TGG | + | chr5_2:10214124-10214143 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTATAGACGAAG+CGG | + | chr5_2:10214154-10214173 | None:intergenic | 35.0% |
| ! | TTTATCCATCCAAGTTGAGT+CGG | - | chr5_2:10214193-10214212 | Msa0756160:intron | 35.0% |
| !! | TTATGCAGAAGCATTGGATT+TGG | + | chr5_2:10214563-10214582 | None:intergenic | 35.0% |
| ! | ACAAGTTTATGCAGAAGCAT+TGG | + | chr5_2:10214569-10214588 | None:intergenic | 35.0% |
| !! | TGGTTTTCAAGACATGTTGT+TGG | - | chr5_2:10214653-10214672 | Msa0756160:intron | 35.0% |
| !! | TGTATAAGTGCGATAATGGA+TGG | + | chr5_2:10214706-10214725 | None:intergenic | 35.0% |
| ACTGAATGTTTAGAGGCAAT+TGG | - | chr5_2:10214843-10214862 | Msa0756160:intron | 35.0% | |
| CAATTGGATTGAATGTAGAC+AGG | - | chr5_2:10214859-10214878 | Msa0756160:intron | 35.0% | |
| !!! | ATGGTTTTAGGAATCAGACA+TGG | - | chr5_2:10214958-10214977 | Msa0756160:intron | 35.0% |
| TTTAAAAAGGGGGGAATTCT+TGG | - | chr5_2:10215020-10215039 | Msa0756160:intron | 35.0% | |
| ! | ATGTTGGAAGCCTTTTGTAT+AGG | - | chr5_2:10215550-10215569 | Msa0756160:intron | 35.0% |
| TATTGAGTGGCCTATACAAA+AGG | + | chr5_2:10215563-10215582 | None:intergenic | 35.0% | |
| CAATGGCAACACTAATCATT+TGG | + | chr5_2:10215597-10215616 | None:intergenic | 35.0% | |
| TACCTAAAATTTGGGGATAG+TGG | - | chr5_2:10215675-10215694 | Msa0756160:intron | 35.0% | |
| ! | ATCCACTATCCCCAAATTTT+AGG | + | chr5_2:10215680-10215699 | None:intergenic | 35.0% |
| GTTGCATACTGCATACTTAT+TGG | - | chr5_2:10215864-10215883 | Msa0756160:intron | 35.0% | |
| TTTCAACTTGGTTGTTCTGA+AGG | - | chr5_2:10215933-10215952 | Msa0756160:intron | 35.0% | |
| TAATTTCCAGACACAAAGCT+TGG | + | chr5_2:10216193-10216212 | None:intergenic | 35.0% | |
| ATTGTACTTCCTGGTTATCA+TGG | - | chr5_2:10216241-10216260 | Msa0756160:intron | 35.0% | |
| CAATATGGTTTCTTCCTTTC+AGG | - | chr5_2:10216364-10216383 | Msa0756160:intron | 35.0% | |
| !! | ACTTCAACTGCTTTGAAGAA+AGG | - | chr5_2:10216392-10216411 | Msa0756160:intron | 35.0% |
| AAAAAGGTCAGTGAATGTGA+GGG | + | chr5_2:10216589-10216608 | None:intergenic | 35.0% | |
| AATTGAAGCTATCGTCTTTG+TGG | + | chr5_2:10216616-10216635 | None:intergenic | 35.0% | |
| ! | GATTTGTCATTTGCAGTTAG+AGG | - | chr5_2:10216731-10216750 | Msa0756160:intron | 35.0% |
| TGGCAGAAACATCAAAGATA+GGG | + | chr5_2:10216812-10216831 | None:intergenic | 35.0% | |
| !! | TGGGATTAGTTTCACGAAAT+TGG | - | chr5_2:10216911-10216930 | Msa0756160:intron | 35.0% |
| AACATGTTCTTTCCTATCAG+TGG | - | chr5_2:10217029-10217048 | Msa0756160:intron | 35.0% | |
| !! | TCTTCTTGATTTGGTCTAGA+TGG | + | chr5_2:10217091-10217110 | None:intergenic | 35.0% |
| !! | CTGATTTGTTGAGAACTTTC+GGG | + | chr5_2:10217135-10217154 | None:intergenic | 35.0% |
| AATCAGAACACTATTACGGT+TGG | - | chr5_2:10217149-10217168 | Msa0756160:intron | 35.0% | |
| AAAGCTAGGTTCAACAATCA+AGG | - | chr5_2:10217206-10217225 | Msa0756160:intron | 35.0% | |
| TAGGTTCAACAATCAAGGAA+AGG | - | chr5_2:10217211-10217230 | Msa0756160:intron | 35.0% | |
| TTCAACAATCAAGGAAAGGT+TGG | - | chr5_2:10217215-10217234 | Msa0756160:intron | 35.0% | |
| TCAACAATCAAGGAAAGGTT+GGG | - | chr5_2:10217216-10217235 | Msa0756160:intron | 35.0% | |
| !! | AAATAGTCAGCACTGACTTT+GGG | + | chr5_2:10217265-10217284 | None:intergenic | 35.0% |
| !!! | AAACTTGGGTTTTTTCTCCA+GGG | + | chr5_2:10217309-10217328 | None:intergenic | 35.0% |
| TGGAGAAAAAACCCAAGTTT+GGG | - | chr5_2:10217309-10217328 | Msa0756160:intron | 35.0% | |
| ! | GTTTCTAGGTTCTTTCTGAT+TGG | - | chr5_2:10217467-10217486 | Msa0756160:intron | 35.0% |
| TACAATGTAAGAAGCAAAGC+AGG | + | chr5_2:10217555-10217574 | None:intergenic | 35.0% | |
| ACAATAGATAAGGATCCTCT+CGG | + | chr5_2:10217610-10217629 | None:intergenic | 35.0% | |
| GATATTGGCAAGAAAGCCAA+AGG | - | chr5_2:10212926-10212945 | Msa0756160:three_prime_UTR | 40.0% | |
| TGAAACGGTAAGCTTCTGAT+CGG | + | chr5_2:10213052-10213071 | None:intergenic | 40.0% | |
| GTTTCATCTTACAGCACTAC+TGG | - | chr5_2:10213066-10213085 | Msa0756160:CDS | 40.0% | |
| TCTGATGTGTGATTAGTGTC+TGG | - | chr5_2:10213270-10213289 | Msa0756160:CDS | 40.0% | |
| ! | TGACTACTTGCTACACATTC+AGG | - | chr5_2:10213653-10213672 | Msa0756160:intron | 40.0% |
| ! | GACTACTTGCTACACATTCA+GGG | - | chr5_2:10213654-10213673 | Msa0756160:intron | 40.0% |
| !! | GCGCATTTGATGATGATTGT+CGG | - | chr5_2:10213775-10213794 | Msa0756160:CDS | 40.0% |
| CTCCACACTTAAACGTGATT+TGG | - | chr5_2:10213894-10213913 | Msa0756160:intron | 40.0% | |
| TGCCAAATCACGTTTAAGTG+TGG | + | chr5_2:10213899-10213918 | None:intergenic | 40.0% | |
| GCGATAATACCGACATTGTT+AGG | - | chr5_2:10214056-10214075 | Msa0756160:intron | 40.0% | |
| TTGTTGTCTATAGACGAAGC+GGG | + | chr5_2:10214153-10214172 | None:intergenic | 40.0% | |
| TGTCTATAGACAAAGCGGTT+TGG | + | chr5_2:10214251-10214270 | None:intergenic | 40.0% | |
| ! | GCTCGCTTTAAATGTTTCTG+AGG | + | chr5_2:10214372-10214391 | None:intergenic | 40.0% |
| ATTACGTGGTCACCTTCTTA+AGG | - | chr5_2:10214433-10214452 | Msa0756160:intron | 40.0% | |
| CTTTCTGCTAGTCATAAGAG+CGG | - | chr5_2:10214624-10214643 | Msa0756160:intron | 40.0% | |
| TAGACAGGAACTTTGACAGA+AGG | - | chr5_2:10214874-10214893 | Msa0756160:intron | 40.0% | |
| AGACAGGAACTTTGACAGAA+GGG | - | chr5_2:10214875-10214894 | Msa0756160:intron | 40.0% | |
| TCAGACATGGAAGAAACAGA+TGG | - | chr5_2:10214971-10214990 | Msa0756160:intron | 40.0% | |
| CAGAGGCTCAGAAAAATTGT+TGG | - | chr5_2:10215303-10215322 | Msa0756160:intron | 40.0% | |
| AGGCTCAGAAAAATTGTTGG+TGG | - | chr5_2:10215306-10215325 | Msa0756160:intron | 40.0% | |
| GAGATTGAGTGATTGATCAC+TGG | - | chr5_2:10215391-10215410 | Msa0756160:intron | 40.0% | |
| ! | GTGAGTTGAGAAATCTGTAG+AGG | - | chr5_2:10215418-10215437 | Msa0756160:intron | 40.0% |
| TTGAGAAATCTGTAGAGGAC+AGG | - | chr5_2:10215423-10215442 | Msa0756160:intron | 40.0% | |
| GGTGATTCAAACGTATTGAG+TGG | + | chr5_2:10215576-10215595 | None:intergenic | 40.0% | |
| ! | GCAATGAAAGCTTTTCAGCT+TGG | - | chr5_2:10215711-10215730 | Msa0756160:intron | 40.0% |
| TTTCAGCTTGGTTGTTCTGA+AGG | - | chr5_2:10215723-10215742 | Msa0756160:intron | 40.0% | |
| TATGCAGTATGCAACATGTG+AGG | + | chr5_2:10215859-10215878 | None:intergenic | 40.0% | |
| !! | TCAACTGCTTTGAAGAAAGG+AGG | - | chr5_2:10216395-10216414 | Msa0756160:intron | 40.0% |
| AATTGAGACAGCGTCAATTG+TGG | - | chr5_2:10216478-10216497 | Msa0756160:intron | 40.0% | |
| ATTGAGACAGCGTCAATTGT+GGG | - | chr5_2:10216479-10216498 | Msa0756160:intron | 40.0% | |
| ! | GGTTGTATTGATCTGGAAGA+GGG | + | chr5_2:10216568-10216587 | None:intergenic | 40.0% |
| ! | ATGTGAGGGTTGTATTGATC+TGG | + | chr5_2:10216575-10216594 | None:intergenic | 40.0% |
| GAAAAAGGTCAGTGAATGTG+AGG | + | chr5_2:10216590-10216609 | None:intergenic | 40.0% | |
| TCGTCTTTGTGGATGGAAAA+AGG | + | chr5_2:10216605-10216624 | None:intergenic | 40.0% | |
| AAGCTGCCTGATTATAGTTC+TGG | - | chr5_2:10216636-10216655 | Msa0756160:intron | 40.0% | |
| ACCTTGCCAGAACTATAATC+AGG | + | chr5_2:10216645-10216664 | None:intergenic | 40.0% | |
| !! | ACACTGTCTCTGAAATTGTG+TGG | - | chr5_2:10216708-10216727 | Msa0756160:intron | 40.0% |
| !! | CACTGTCTCTGAAATTGTGT+GGG | - | chr5_2:10216709-10216728 | Msa0756160:intron | 40.0% |
| GGCAGAAACATCAAAGATAG+GGG | + | chr5_2:10216811-10216830 | None:intergenic | 40.0% | |
| GTGGCAGAAACATCAAAGAT+AGG | + | chr5_2:10216813-10216832 | None:intergenic | 40.0% | |
| ! | TTTGATGTTTCTGCCACTGT+TGG | - | chr5_2:10216816-10216835 | Msa0756160:intron | 40.0% |
| GCAGGCTATGATACTAAATC+TGG | - | chr5_2:10216867-10216886 | Msa0756160:intron | 40.0% | |
| !! | TCTTGATTTGGTCTAGATGG+TGG | + | chr5_2:10217088-10217107 | None:intergenic | 40.0% |
| AGAACACTATTACGGTTGGA+GGG | - | chr5_2:10217153-10217172 | Msa0756160:intron | 40.0% | |
| !! | TAGCTTTGATCTGTGTCAGA+GGG | + | chr5_2:10217193-10217212 | None:intergenic | 40.0% |
| CAACAATCAAGGAAAGGTTG+GGG | - | chr5_2:10217217-10217236 | Msa0756160:intron | 40.0% | |
| AACAATCAAGGAAAGGTTGG+GGG | - | chr5_2:10217218-10217237 | Msa0756160:intron | 40.0% | |
| !! | GAAATAGTCAGCACTGACTT+TGG | + | chr5_2:10217266-10217285 | None:intergenic | 40.0% |
| !! | AAGTCAGTGCTGACTATTTC+TGG | - | chr5_2:10217266-10217285 | Msa0756160:intron | 40.0% |
| !!! | CAAACTTGGGTTTTTTCTCC+AGG | + | chr5_2:10217310-10217329 | None:intergenic | 40.0% |
| CTGGAGAAAAAACCCAAGTT+TGG | - | chr5_2:10217308-10217327 | Msa0756160:intron | 40.0% | |
| GAAAAAACCCAAGTTTGGGT+TGG | - | chr5_2:10217313-10217332 | Msa0756160:intron | 40.0% | |
| ACTTCAAGGTTTGAGAGCAA+TGG | + | chr5_2:10217339-10217358 | None:intergenic | 40.0% | |
| TTCAAGGGCCACCAAAAAAA+TGG | + | chr5_2:10217414-10217433 | None:intergenic | 40.0% | |
| !!! | ATTTTTTTGGTGGCCCTTGA+AGG | - | chr5_2:10217413-10217432 | Msa0756160:intron | 40.0% |
| !!! | TTTTTTTGGTGGCCCTTGAA+GGG | - | chr5_2:10217414-10217433 | Msa0756160:intron | 40.0% |
| TTATTCTACCCTCCCTTCAA+GGG | + | chr5_2:10217429-10217448 | None:intergenic | 40.0% | |
| ATTATTCTACCCTCCCTTCA+AGG | + | chr5_2:10217430-10217449 | None:intergenic | 40.0% | |
| ! | GTCACTTTAGTCCCTGAATG+AGG | - | chr5_2:10213322-10213341 | Msa0756160:CDS | 45.0% |
| GACAGGACACAACATAGACA+GGG | + | chr5_2:10213734-10213753 | None:intergenic | 45.0% | |
| AGACAGGACACAACATAGAC+AGG | + | chr5_2:10213735-10213754 | None:intergenic | 45.0% | |
| GATTTGGCAAGAGTAGTACC+TGG | - | chr5_2:10213910-10213929 | Msa0756160:intron | 45.0% | |
| CTATTCCCACTAAGTGGGAT+GGG | + | chr5_2:10213978-10213997 | None:intergenic | 45.0% | |
| CAAGCCTATTCCCACTAAGT+GGG | + | chr5_2:10213983-10214002 | None:intergenic | 45.0% | |
| TCGGTATTATCGCTTGTGCT+AGG | + | chr5_2:10214049-10214068 | None:intergenic | 45.0% | |
| ! | GAAGATCCTGGTTTGAACCA+AGG | + | chr5_2:10214102-10214121 | None:intergenic | 45.0% |
| ! | TTCATGTAGCCGACTCAACT+TGG | + | chr5_2:10214205-10214224 | None:intergenic | 45.0% |
| !! | CGGTTTGGTTCAACACAATG+GGG | + | chr5_2:10214236-10214255 | None:intergenic | 45.0% |
| !! | GCGGTTTGGTTCAACACAAT+GGG | + | chr5_2:10214237-10214256 | None:intergenic | 45.0% |
| !! | AGCGGTTTGGTTCAACACAA+TGG | + | chr5_2:10214238-10214257 | None:intergenic | 45.0% |
| AGTCATAAGAGCGGAGCATA+TGG | - | chr5_2:10214633-10214652 | Msa0756160:intron | 45.0% | |
| !! | GCGATAATGGATGGTTCGTA+GGG | + | chr5_2:10214697-10214716 | None:intergenic | 45.0% |
| !! | TGCGATAATGGATGGTTCGT+AGG | + | chr5_2:10214698-10214717 | None:intergenic | 45.0% |
| ! | CTTGGACAAGAGTTGAGTTG+AGG | - | chr5_2:10214780-10214799 | Msa0756160:intron | 45.0% |
| AAAACCATCCAAGCCTCCAA+GGG | + | chr5_2:10214946-10214965 | None:intergenic | 45.0% | |
| TAAAACCATCCAAGCCTCCA+AGG | + | chr5_2:10214947-10214966 | None:intergenic | 45.0% | |
| ! | TTGGAGGCTTGGATGGTTTT+AGG | - | chr5_2:10214946-10214965 | Msa0756160:intron | 45.0% |
| GCTGTTGAAAGTTATCACGC+AGG | - | chr5_2:10215051-10215070 | Msa0756160:intron | 45.0% | |
| TGGCCAATAATAGACAGCAG+AGG | - | chr5_2:10215286-10215305 | Msa0756160:intron | 45.0% | |
| GAGCCTCTGCTGTCTATTAT+TGG | + | chr5_2:10215292-10215311 | None:intergenic | 45.0% | |
| CATGCAGTACGCATCATGTA+AGG | + | chr5_2:10215650-10215669 | None:intergenic | 45.0% | |
| ATGCATGTTGACAGCAACGT+AGG | - | chr5_2:10215908-10215927 | Msa0756160:intron | 45.0% | |
| ! | GCAACGTAGGCTTTTCAACT+TGG | - | chr5_2:10215921-10215940 | Msa0756160:intron | 45.0% |
| TTCTTAATGCCGTACTGCAG+CGG | - | chr5_2:10216082-10216101 | Msa0756160:intron | 45.0% | |
| ! | TTTCCTCCAAGCTTTGTGTC+TGG | - | chr5_2:10216184-10216203 | Msa0756160:intron | 45.0% |
| TTTCCAGACACAAAGCTTGG+AGG | + | chr5_2:10216190-10216209 | None:intergenic | 45.0% | |
| TGTCTGGCTATTGTACTTCC+TGG | - | chr5_2:10216232-10216251 | Msa0756160:intron | 45.0% | |
| GTACTTCCTGGTTATCATGG+TGG | - | chr5_2:10216244-10216263 | Msa0756160:intron | 45.0% | |
| AAGAATGTGCTATGGTTCCC+AGG | - | chr5_2:10216280-10216299 | Msa0756160:intron | 45.0% | |
| AGAATGTGCTATGGTTCCCA+GGG | - | chr5_2:10216281-10216300 | Msa0756160:intron | 45.0% | |
| AGTTGAAGTGAGTGCCTGAA+AGG | + | chr5_2:10216381-10216400 | None:intergenic | 45.0% | |
| AAGAAAGGAGGACTCTCAAC+TGG | - | chr5_2:10216407-10216426 | Msa0756160:intron | 45.0% | |
| AGAAAGGAGGACTCTCAACT+GGG | - | chr5_2:10216408-10216427 | Msa0756160:intron | 45.0% | |
| ! | GGGTTGTATTGATCTGGAAG+AGG | + | chr5_2:10216569-10216588 | None:intergenic | 45.0% |
| GAAGCTATCGTCTTTGTGGA+TGG | + | chr5_2:10216612-10216631 | None:intergenic | 45.0% | |
| !! | GCCTGATTATAGTTCTGGCA+AGG | - | chr5_2:10216641-10216660 | Msa0756160:intron | 45.0% |
| TTTCCTATCAGTGGCGACAA+GGG | - | chr5_2:10217038-10217057 | Msa0756160:intron | 45.0% | |
| !! | TGATTTGGTCTAGATGGTGG+AGG | + | chr5_2:10217085-10217104 | None:intergenic | 45.0% |
| CAGCAGCACTCTTCTTGATT+TGG | + | chr5_2:10217100-10217119 | None:intergenic | 45.0% | |
| CAGAACACTATTACGGTTGG+AGG | - | chr5_2:10217152-10217171 | Msa0756160:intron | 45.0% | |
| !! | CTAGCTTTGATCTGTGTCAG+AGG | + | chr5_2:10217194-10217213 | None:intergenic | 45.0% |
| CTCTGACACAGATCAAAGCT+AGG | - | chr5_2:10217192-10217211 | Msa0756160:intron | 45.0% | |
| !! | AGTGCTGACTATTTCTGGTG+AGG | - | chr5_2:10217271-10217290 | Msa0756160:intron | 45.0% |
| !! | TTCTGGTGAGGTTGATACCA+AGG | - | chr5_2:10217283-10217302 | Msa0756160:intron | 45.0% |
| TTCCACAGATGAGCGTTTCT+AGG | - | chr5_2:10217453-10217472 | Msa0756160:intron | 45.0% | |
| AACCTAGAAACGCTCATCTG+TGG | + | chr5_2:10217458-10217477 | None:intergenic | 45.0% | |
| AAATGGGAAACGGAAGCCAT+AGG | + | chr5_2:10217520-10217539 | None:intergenic | 45.0% | |
| GCACTGTGCTTCACGAAACA+GGG | + | chr5_2:10212818-10212837 | None:intergenic | 50.0% | |
| TGCACTGTGCTTCACGAAAC+AGG | + | chr5_2:10212819-10212838 | None:intergenic | 50.0% | |
| ATCGAAGATGAGCAAGGGAC+CGG | - | chr5_2:10212892-10212911 | Msa0756160:three_prime_UTR | 50.0% | |
| CCAATATCGGAGTAGAGACC+CGG | + | chr5_2:10212914-10212933 | None:intergenic | 50.0% | |
| ACCTGGATGTGTGACATCCT+AGG | - | chr5_2:10213927-10213946 | Msa0756160:CDS | 50.0% | |
| TCCTAGGATGTCACACATCC+AGG | + | chr5_2:10213931-10213950 | None:intergenic | 50.0% | |
| GTGCAACACAAGGACTTCCT+AGG | + | chr5_2:10213947-10213966 | None:intergenic | 50.0% | |
| CCTATTCCCACTAAGTGGGA+TGG | + | chr5_2:10213979-10213998 | None:intergenic | 50.0% | |
| CCATCCCACTTAGTGGGAAT+AGG | - | chr5_2:10213976-10213995 | Msa0756160:CDS | 50.0% | |
| CCAAGCCTATTCCCACTAAG+TGG | + | chr5_2:10213984-10214003 | None:intergenic | 50.0% | |
| CCACTTAGTGGGAATAGGCT+TGG | - | chr5_2:10213981-10214000 | Msa0756160:CDS | 50.0% | |
| CTTAGTGGGAATAGGCTTGG+TGG | - | chr5_2:10213984-10214003 | Msa0756160:CDS | 50.0% | |
| TGCTCTCCTTGGTTCAAACC+AGG | - | chr5_2:10214093-10214112 | Msa0756160:intron | 50.0% | |
| ACACACGACATGGAAGATCC+TGG | + | chr5_2:10214114-10214133 | None:intergenic | 50.0% | |
| ! | TGTAGCCGACTCAACTTGGA+TGG | + | chr5_2:10214201-10214220 | None:intergenic | 50.0% |
| TCAAAAAACAGCGCCACCCT+TGG | - | chr5_2:10214927-10214946 | Msa0756160:intron | 50.0% | |
| ATGCCAATGCGAGACTGACA+AGG | - | chr5_2:10215475-10215494 | Msa0756160:intron | 50.0% | |
| TCTTAATGCCGTACTGCAGC+GGG | - | chr5_2:10216083-10216102 | Msa0756160:intron | 50.0% | |
| AACATGAACCCGCTGCAGTA+CGG | + | chr5_2:10216094-10216113 | None:intergenic | 50.0% | |
| GGAAAGCCACCATGATAACC+AGG | + | chr5_2:10216253-10216272 | None:intergenic | 50.0% | |
| GAAAGGAGGACTCTCAACTG+GGG | - | chr5_2:10216409-10216428 | Msa0756160:intron | 50.0% | |
| AGGTTAAGGTAGCATGGTCG+TGG | + | chr5_2:10216767-10216786 | None:intergenic | 50.0% | |
| CGACTGAGGTTAAGGTAGCA+TGG | + | chr5_2:10216773-10216792 | None:intergenic | 50.0% | |
| CAGTGTAGCGACTGAGGTTA+AGG | + | chr5_2:10216781-10216800 | None:intergenic | 50.0% | |
| TTGCTTCAGTGTAGCGACTG+AGG | + | chr5_2:10216787-10216806 | None:intergenic | 50.0% | |
| AAGGGTTGGAGAACCAACAG+TGG | + | chr5_2:10216832-10216851 | None:intergenic | 50.0% | |
| GGTTCTCCAACCCTTGCATT+TGG | - | chr5_2:10216837-10216856 | Msa0756160:intron | 50.0% | |
| TCAGCACCAAATGCAAGGGT+TGG | + | chr5_2:10216846-10216865 | None:intergenic | 50.0% | |
| !! | AACCCTTGCATTTGGTGCTG+AGG | - | chr5_2:10216845-10216864 | Msa0756160:intron | 50.0% |
| TGCCTCAGCACCAAATGCAA+GGG | + | chr5_2:10216850-10216869 | None:intergenic | 50.0% | |
| CTTTCCTATCAGTGGCGACA+AGG | - | chr5_2:10217037-10217056 | Msa0756160:intron | 50.0% | |
| !! | CAAGAAGAGTGCTGCTGTTG+TGG | - | chr5_2:10217103-10217122 | Msa0756160:intron | 50.0% |
| GCAATGGCCAACCCAAACTT+GGG | + | chr5_2:10217323-10217342 | None:intergenic | 50.0% | |
| AGCAATGGCCAACCCAAACT+TGG | + | chr5_2:10217324-10217343 | None:intergenic | 50.0% | |
| !! | TGGAAGTCTTGTTCTCCGAG+AGG | - | chr5_2:10217592-10217611 | Msa0756160:five_prime_UTR | 50.0% |
| GTGCTTCACGAAACAGGGTG+TGG | + | chr5_2:10212813-10212832 | None:intergenic | 55.0% | |
| TCGAAGATGAGCAAGGGACC+GGG | - | chr5_2:10212893-10212912 | Msa0756160:three_prime_UTR | 55.0% | |
| CCGGGTCTCTACTCCGATAT+TGG | - | chr5_2:10212911-10212930 | Msa0756160:three_prime_UTR | 55.0% | |
| !! | CGGTGCTACATAGCCGACAA+CGG | + | chr5_2:10213245-10213264 | None:intergenic | 55.0% |
| CAACATAGACAGGGCGACAC+CGG | + | chr5_2:10213725-10213744 | None:intergenic | 55.0% | |
| TTCCCACTAAGTGGGATGGG+CGG | + | chr5_2:10213975-10213994 | None:intergenic | 55.0% | |
| AAAAACAGCGCCACCCTTGG+AGG | - | chr5_2:10214930-10214949 | Msa0756160:intron | 55.0% | |
| GCACCTTGTCAGTCTCGCAT+TGG | + | chr5_2:10215481-10215500 | None:intergenic | 55.0% | |
| ! | CTGCAGCGGGTTCATGTTGA+AGG | - | chr5_2:10216096-10216115 | Msa0756160:intron | 55.0% |
| ! | CAGCGGGTTCATGTTGAAGG+TGG | - | chr5_2:10216099-10216118 | Msa0756160:intron | 55.0% |
| AGGACTCTCAACTGGGGATG+TGG | - | chr5_2:10216415-10216434 | Msa0756160:intron | 55.0% | |
| CTGCCTCAGCACCAAATGCA+AGG | + | chr5_2:10216851-10216870 | None:intergenic | 55.0% | |
| !! | CTTGCATTTGGTGCTGAGGC+AGG | - | chr5_2:10216849-10216868 | Msa0756160:intron | 55.0% |
| TCACCCTTGTCGCCACTGAT+AGG | + | chr5_2:10217044-10217063 | None:intergenic | 55.0% | |
| TTGGGAAGAGCTCGTGCTGT+AGG | + | chr5_2:10217247-10217266 | None:intergenic | 55.0% | |
| !! | TGAGGTTGATACCAAGGCCC+TGG | - | chr5_2:10217289-10217308 | Msa0756160:intron | 55.0% |
| !!! | GGGTTTTTTCTCCAGGGCCT+TGG | + | chr5_2:10217303-10217322 | None:intergenic | 55.0% |
| !! | TTTTGGTGGCCCTTGAAGGG+AGG | - | chr5_2:10217417-10217436 | Msa0756160:intron | 55.0% |
| ! | TTTGGTGGCCCTTGAAGGGA+GGG | - | chr5_2:10217418-10217437 | Msa0756160:intron | 55.0% |
| TCCCGCCCATCCCACTTAGT+GGG | - | chr5_2:10213970-10213989 | Msa0756160:CDS | 60.0% | |
| TCCCACTAAGTGGGATGGGC+GGG | + | chr5_2:10213974-10213993 | None:intergenic | 60.0% | |
| ACCATCCAAGCCTCCAAGGG+TGG | + | chr5_2:10214943-10214962 | None:intergenic | 60.0% | |
| CTCAGCTGAGTCGTGACCCT+GGG | + | chr5_2:10216300-10216319 | None:intergenic | 60.0% | |
| TCTCAGCTGAGTCGTGACCC+TGG | + | chr5_2:10216301-10216320 | None:intergenic | 60.0% | |
| CTCTCAACTGGGGATGTGGC+AGG | - | chr5_2:10216419-10216438 | Msa0756160:intron | 60.0% | |
| ! | GGCGGGAGAGGTGCAACACA+AGG | + | chr5_2:10213957-10213976 | None:intergenic | 65.0% |
| CTAAGTGGGATGGGCGGGAG+AGG | + | chr5_2:10213969-10213988 | None:intergenic | 65.0% | |
| CTCCCGCCCATCCCACTTAG+TGG | - | chr5_2:10213969-10213988 | Msa0756160:CDS | 65.0% | |
| GCCACCCTTGGAGGCTTGGA+TGG | - | chr5_2:10214939-10214958 | Msa0756160:intron | 65.0% | |
| CAGCGCCACCCTTGGAGGCT+TGG | - | chr5_2:10214935-10214954 | Msa0756160:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 10212754 | 10217661 | 10212754 | ID=Msa0756160;Name=Msa0756160 |
| chr5_2 | mRNA | 10212754 | 10217661 | 10212754 | ID=Msa0756160-mRNA-1;Parent=Msa0756160;Name=Msa0756160-mRNA-1;_AED=0.30;_eAED=0.30;_QI=145|1|1|1|1|1|6|306|276 |
| chr5_2 | exon | 10212754 | 10213366 | 10212754 | ID=Msa0756160-mRNA-1:exon:4718;Parent=Msa0756160-mRNA-1 |
| chr5_2 | exon | 10213460 | 10213668 | 10213460 | ID=Msa0756160-mRNA-1:exon:4717;Parent=Msa0756160-mRNA-1 |
| chr5_2 | exon | 10213753 | 10213839 | 10213753 | ID=Msa0756160-mRNA-1:exon:4716;Parent=Msa0756160-mRNA-1 |
| chr5_2 | exon | 10213919 | 10214029 | 10213919 | ID=Msa0756160-mRNA-1:exon:4715;Parent=Msa0756160-mRNA-1 |
| chr5_2 | exon | 10217323 | 10217390 | 10217323 | ID=Msa0756160-mRNA-1:exon:4714;Parent=Msa0756160-mRNA-1 |
| chr5_2 | exon | 10217468 | 10217661 | 10217468 | ID=Msa0756160-mRNA-1:exon:4713;Parent=Msa0756160-mRNA-1 |
| chr5_2 | five_prime_UTR | 10217517 | 10217661 | 10217517 | ID=Msa0756160-mRNA-1:five_prime_utr;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10217468 | 10217516 | 10217468 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10217323 | 10217390 | 10217323 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10213919 | 10214029 | 10213919 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10213753 | 10213839 | 10213753 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10213460 | 10213668 | 10213460 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | CDS | 10213060 | 10213366 | 10213060 | ID=Msa0756160-mRNA-1:cds;Parent=Msa0756160-mRNA-1 |
| chr5_2 | three_prime_UTR | 10212754 | 10213059 | 10212754 | ID=Msa0756160-mRNA-1:three_prime_utr;Parent=Msa0756160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
