AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0564920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564920 MtrunA17_Chr8g0378951 99.003 301 3 0 1 301 1 301 0.0 612
Msa0564920 MtrunA17_Chr5g0412401 37.963 324 155 4 18 299 3 322 3.11e-64 205
Msa0564920 MtrunA17_Chr8g0367641 39.062 320 150 6 18 299 3 315 2.46e-61 197
Msa0564920 MtrunA17_Chr3g0133111 37.421 318 156 6 18 299 3 313 9.65e-61 196
Msa0564920 MtrunA17_Chr7g0241521 33.000 300 166 6 21 297 13 300 1.48e-40 143
Msa0564920 MtrunA17_Chr7g0241521 25.128 195 125 4 16 199 116 300 1.74e-11 63.9
Msa0564920 MtrunA17_Chr1g0196921 33.333 279 174 5 27 295 20 296 7.91e-40 141
Msa0564920 MtrunA17_Chr4g0008061 32.441 299 178 5 14 298 11 299 7.93e-40 141
Msa0564920 MtrunA17_Chr8g0379131 63.014 73 27 0 212 284 28 100 1.76e-26 100
Msa0564920 MtrunA17_Chr8g0378971 72.131 61 17 0 234 294 3 63 8.02e-26 97.4
Msa0564920 MtrunA17_Chr3g0103681 28.417 278 176 4 33 295 28 297 1.35e-24 100
Msa0564920 MtrunA17_Chr3g0103681 28.409 176 107 4 34 199 133 299 5.55e-13 68.2
Msa0564920 MtrunA17_Chr4g0028531 26.936 297 199 10 17 299 15 307 3.86e-20 88.6
Msa0564920 MtrunA17_Chr4g0004571 26.718 262 175 6 14 263 3 259 4.75e-20 88.2
Msa0564920 MtrunA17_Chr1g0196161 27.869 183 116 4 118 295 3 174 1.37e-16 76.3
Msa0564920 MtrunA17_Chr7g0269701 22.819 298 197 8 23 299 24 309 2.04e-14 72.4
Msa0564920 MtrunA17_Chr7g0252401 24.913 289 184 7 21 294 207 477 3.24e-14 72.8
Msa0564920 MtrunA17_Chr3g0131501 32.934 167 98 6 24 181 302 463 7.26e-13 68.6
Msa0564920 MtrunA17_Chr3g0131501 23.592 284 201 8 19 294 203 478 7.88e-13 68.6
Msa0564920 MtrunA17_Chr2g0331771 27.143 280 184 8 19 288 154 423 8.73e-13 68.2
Msa0564920 MtrunA17_Chr6g0463351 26.108 203 131 4 20 210 159 354 9.03e-13 68.2
Msa0564920 MtrunA17_Chr5g0396801 21.104 308 212 5 8 287 25 329 6.29e-12 65.5
Msa0564920 MtrunA17_Chr8g0386871 26.455 189 120 6 22 204 414 589 2.06e-11 64.3
Msa0564920 MtrunA17_Chr1g0195101 24.555 281 177 11 37 295 35 302 3.46e-11 62.8
Msa0564920 MtrunA17_Chr3g0137941 25.926 162 114 2 21 179 216 374 5.33e-11 62.8
Msa0564920 MtrunA17_Chr5g0411411 29.078 282 157 14 24 278 15 280 6.83e-11 62.0
Msa0564920 MtrunA17_Chr8g0366791 29.304 273 166 11 19 271 7 272 9.04e-11 61.6
Msa0564920 MtrunA17_Chr8g0383321 24.549 277 156 10 22 287 53 287 9.63e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0564920 AT5G19760.1 83.056 301 48 2 1 301 1 298 0.0 523
Msa0564920 AT4G24570.1 38.871 319 150 7 18 299 3 313 5.18e-63 202
Msa0564920 AT2G22500.1 38.291 316 154 7 18 299 3 311 1.81e-56 185
Msa0564920 AT5G09470.1 37.591 274 157 5 33 298 67 334 1.54e-48 165
Msa0564920 AT1G14140.1 35.034 294 172 7 16 295 11 299 2.77e-41 145
Msa0564920 AT5G58970.1 30.976 297 174 5 18 295 13 297 4.77e-40 142
Msa0564920 AT5G58970.1 26.596 188 107 5 27 198 126 298 9.47e-12 65.1
Msa0564920 AT3G54110.1 34.420 276 161 6 32 294 27 295 9.82e-40 141
Msa0564920 AT4G03115.1 30.492 305 188 10 2 295 17 308 1.48e-31 120
Msa0564920 AT5G58970.2 31.120 241 142 4 18 239 13 248 1.55e-31 119
Msa0564920 AT4G03115.3 30.492 305 188 10 2 295 49 340 2.72e-31 120
Msa0564920 AT4G03115.5 29.707 239 153 6 59 295 12 237 5.44e-25 100
Msa0564920 AT4G03115.6 29.707 239 153 6 59 295 20 245 8.49e-25 100
Msa0564920 AT5G01340.1 27.817 284 192 7 22 295 18 298 1.79e-22 95.5
Msa0564920 AT4G03115.2 32.558 215 123 8 2 206 17 219 3.35e-19 84.7
Msa0564920 AT4G03115.4 32.558 215 123 8 2 206 17 219 3.42e-19 84.7
Msa0564920 AT4G32400.1 21.951 287 206 7 16 295 109 384 1.06e-14 74.3
Msa0564920 AT5G07320.1 30.120 166 99 6 24 181 303 459 6.52e-13 69.3
Msa0564920 AT5G51050.1 31.034 174 101 5 17 181 315 478 6.83e-13 69.3
Msa0564920 AT5G46800.2 28.873 284 174 8 19 280 6 283 1.22e-12 67.4
Msa0564920 AT5G46800.3 28.873 284 174 8 19 280 6 283 1.22e-12 67.4
Msa0564920 AT5G46800.1 28.873 284 174 8 19 280 6 283 1.22e-12 67.4
Msa0564920 AT5G42130.1 26.316 171 121 3 15 180 205 375 5.59e-11 63.2

Find 108 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTGTTGCTACTGGTTTC+TGG 0.106398 4_1:-65721972 Msa0564920:CDS
CCTCAACCAGCTCCAGAAAT+TGG 0.196597 4_1:-65717798 Msa0564920:CDS
TTGATATCCAATTTCCAAAA+AGG 0.198633 4_1:+65717684 None:intergenic
GGAGAAAAGTTATGGGTTAT+AGG 0.255079 4_1:-65717777 Msa0564920:exon
TTCGTCAATGGTGGTGCTTC+TGG 0.275917 4_1:-65721934 Msa0564920:CDS
TTAGGTGCAAGTAGTGTATC+TGG 0.278521 4_1:-65718142 Msa0564920:intron
CAGAAATTGGAGAAAAGTTA+TGG 0.301655 4_1:-65717785 Msa0564920:CDS
TTCTTGCAGGGTCTATCAGC+TGG 0.316238 4_1:-65721380 Msa0564920:intron
AGTTGGTAGTCCAGCTGATT+TGG 0.324876 4_1:-65720919 Msa0564920:CDS
CTTTCACTGTGGAAAGGTGC+TGG 0.335848 4_1:-65720792 Msa0564920:CDS
GGGCTGACTGCTGGTGCAAT+TGG 0.358637 4_1:-65720948 Msa0564920:CDS
AAACTACACAAACGCCTTCC+AGG 0.363434 4_1:-65720847 Msa0564920:CDS
CTGCACGCCTTGGAACATTT+AGG 0.364412 4_1:-65721331 Msa0564920:intron
GGGTGTTGGTGCCTTCTATA+AGG 0.368056 4_1:-65721698 Msa0564920:intron
TGGCAGGGGCTTGCCATCAT+TGG 0.380343 4_1:+65720992 None:intergenic
GGAAGGCGTTTGTGTAGTTT+CGG 0.380503 4_1:+65720850 None:intergenic
CCAATTTCTGGAGCTGGTTG+AGG 0.389193 4_1:+65717798 None:intergenic
TTCTTCTCGTCTCCCATTGT+TGG 0.393560 4_1:+65722000 None:intergenic
AATTCAGGTTAGGATTCAAC+TGG 0.396885 4_1:-65721767 Msa0564920:intron
TAATTTGTTGGCTGTGTTGT+AGG 0.400868 4_1:-65717708 Msa0564920:three_prime_UTR
GAAGGGTCCTCCAGATTTGA+AGG 0.417928 4_1:+65718000 None:intergenic
TTGAGCATTGAATAATTTGT+TGG 0.423699 4_1:-65717720 Msa0564920:three_prime_UTR
AGAAATTGGAGAAAAGTTAT+GGG 0.426080 4_1:-65717784 Msa0564920:CDS
ACCATTGACGAAAGGCTTGA+TGG 0.428395 4_1:+65721945 None:intergenic
GCTGTCAAGACCTTCAAATC+TGG 0.432966 4_1:-65718010 Msa0564920:CDS
CAGTCAAGAGAGCCGGTGTA+TGG 0.437255 4_1:+65718034 None:intergenic
CATACCTTGATCATATCAAT+AGG 0.444555 4_1:+65721886 None:intergenic
TGAGTCTTCACATAATCAAA+TGG 0.453835 4_1:+65718094 None:intergenic
TACCGTATCGGTGCAGATGA+AGG 0.455491 4_1:-65720819 Msa0564920:CDS
ACCATCAAGCCTTTCGTCAA+TGG 0.457555 4_1:-65721946 Msa0564920:CDS
GGCCAGAAACCAGTAGCAAC+AGG 0.466383 4_1:+65721970 None:intergenic
CACCGATACGGTAAAGTGCC+TGG 0.473291 4_1:+65720829 None:intergenic
AAGCCTAAGCCTGTTGCTAC+TGG 0.474321 4_1:-65721979 Msa0564920:CDS
TCAAAGTGTTGAGTTCTTCA+AGG 0.476440 4_1:-65720715 Msa0564920:CDS
TTCAAGGATACCGTTGGTCT+AGG 0.476717 4_1:-65720699 Msa0564920:CDS
AAACCAGTAGCAACAGGCTT+AGG 0.477001 4_1:+65721976 None:intergenic
GTCTATCAGCTGGGTTACTC+AGG 0.478134 4_1:-65721370 Msa0564920:CDS
GATTCCCTGTCTACTGTGTC+AGG 0.479793 4_1:-65717964 Msa0564920:CDS
TTTCACTGTGGAAAGGTGCT+GGG 0.480851 4_1:-65720791 Msa0564920:CDS
TCAACCTATTGATATGATCA+AGG 0.487786 4_1:-65721890 Msa0564920:intron
AAACAAGGAAAACAATGAAA+AGG 0.495989 4_1:+65722222 None:intergenic
CTTGACAAATAAAGCAATTG+AGG 0.499499 4_1:-65721015 Msa0564920:CDS
ACTTACACCACTGCACGCCT+TGG 0.499902 4_1:-65721341 Msa0564920:CDS
TTTGGCACTCATTCGTATGC+AGG 0.500271 4_1:-65720901 Msa0564920:CDS
GACACAGTAGACAGGGAATC+CGG 0.501193 4_1:+65717967 None:intergenic
AAGAGCCATGGCATTGAACA+TGG 0.503929 4_1:-65720757 Msa0564920:CDS
GAATCCGGTGTAAAATTTGA+AGG 0.507310 4_1:+65717982 None:intergenic
GCAATCCTGACACAGTAGAC+AGG 0.508794 4_1:+65717959 None:intergenic
ATCTACCATGCTCAAGAATG+AGG 0.513560 4_1:-65721719 Msa0564920:CDS
ATCAGCTGGGTTACTCAGGC+AGG 0.514032 4_1:-65721366 Msa0564920:CDS
GCTCTATGTGGGCTGACTGC+TGG 0.520808 4_1:-65720957 Msa0564920:CDS
CGAATGAGTGCCAAATCAGC+TGG 0.523817 4_1:+65720909 None:intergenic
ATTAGTCATGCAATTCAAGC+GGG 0.524365 4_1:-65717632 Msa0564920:three_prime_UTR
AAAGCAATTGAGGCCAATGA+TGG 0.524756 4_1:-65721005 Msa0564920:CDS
TTCCAGGCACTTTACCGTAT+CGG 0.534625 4_1:-65720831 Msa0564920:CDS
ACTTCGCTAATACCAACAAT+GGG 0.536551 4_1:-65722012 Msa0564920:exon
TCTTGCAGGGTCTATCAGCT+GGG 0.537823 4_1:-65721379 Msa0564920:intron
CAGGATTGCTCCCCATGTCA+TGG 0.543518 4_1:-65717945 Msa0564920:intron
TCCCTTCATCTGCACCGATA+CGG 0.543890 4_1:+65720817 None:intergenic
AAGTTATGGGTTATAGGTGA+TGG 0.547875 4_1:-65717771 Msa0564920:exon
ACCGTATCGGTGCAGATGAA+GGG 0.548027 4_1:-65720818 Msa0564920:CDS
TTGACGAAAGGCTTGATGGT+TGG 0.552826 4_1:+65721949 None:intergenic
AACTTCGCTAATACCAACAA+TGG 0.553022 4_1:-65722013 Msa0564920:exon
CATCCCCATGTTCAATGCCA+TGG 0.555090 4_1:+65720752 None:intergenic
ACTGCTTATGGCAGATGACA+TGG 0.559975 4_1:-65717826 Msa0564920:intron
GTTAGGATTCAACTGGGTCA+AGG 0.566704 4_1:-65721760 Msa0564920:CDS
GAGTTCTTCAAGGATACCGT+TGG 0.572249 4_1:-65720705 Msa0564920:CDS
GACAGCACAGTCAAGAGAGC+CGG 0.574269 4_1:+65718027 None:intergenic
TCTTCTTAACCCAACAAACA+AGG 0.579884 4_1:+65722207 None:intergenic
AAAGATGCAACCTGATGCTG+AGG 0.582204 4_1:-65718065 Msa0564920:CDS
TAGTTTCGGCGCTGAGCAAG+AGG 0.584237 4_1:+65720864 None:intergenic
TATGATATGATATGATGCGT+TGG 0.588193 4_1:-65717569 Msa0564920:three_prime_UTR
ATCAATAGGTTGAATAACAC+AGG 0.588855 4_1:+65721900 None:intergenic
GAAATGAAGCGAAGAAAACG+AGG 0.590384 4_1:+65722043 None:intergenic
GGGATTCTTTCACTGTGGAA+AGG 0.593663 4_1:-65720798 Msa0564920:CDS
AACACCCTCATTCTTGAGCA+TGG 0.603718 4_1:+65721714 None:intergenic
GTCAAGACCTTCAAATCTGG+AGG 0.605904 4_1:-65718007 Msa0564920:CDS
AAGAGAATAGTACCATGACA+TGG 0.606457 4_1:+65717933 None:intergenic
AGAGCCATGGCATTGAACAT+GGG 0.610100 4_1:-65720756 Msa0564920:CDS
AAATGTTCCAAGGCGTGCAG+TGG 0.610327 4_1:+65721334 None:intergenic
GAGCCATGGCATTGAACATG+GGG 0.612866 4_1:-65720755 Msa0564920:CDS
ATCAAGCCTTTCGTCAATGG+TGG 0.613468 4_1:-65721943 Msa0564920:CDS
AGAGAATAGTACCATGACAT+GGG 0.614065 4_1:+65717934 None:intergenic
AATTAGTCATGCAATTCAAG+CGG 0.614528 4_1:-65717633 Msa0564920:three_prime_UTR
AATCCGGTGTAAAATTTGAA+GGG 0.616204 4_1:+65717983 None:intergenic
TCTACCATGCTCAAGAATGA+GGG 0.619139 4_1:-65721718 Msa0564920:CDS
CAATCCTGACACAGTAGACA+GGG 0.622100 4_1:+65717960 None:intergenic
ATAACATGTACAATATCTCG+TGG 0.622110 4_1:-65717352 Msa0564920:three_prime_UTR
CAACTCACCTAAATGTTCCA+AGG 0.622902 4_1:+65721324 None:intergenic
ATGAAGGGATTCTTTCACTG+TGG 0.628478 4_1:-65720803 Msa0564920:CDS
GGTGAAATGACTACTGTGGT+TGG 0.629754 4_1:-65720678 Msa0564920:intron
GATACGGTAAAGTGCCTGGA+AGG 0.630447 4_1:+65720833 None:intergenic
GCCATGGCTCTTACTACAGT+AGG 0.638558 4_1:+65720768 None:intergenic
GAAGTGAAGAACGAATCTAG+TGG 0.641926 4_1:+65722109 None:intergenic
GCCTACTGTAGTAAGAGCCA+TGG 0.642788 4_1:-65720769 Msa0564920:CDS
ATGTGTCGAAAAGATGTCTG+AGG 0.652732 4_1:+65717464 None:intergenic
GGTGCAATTGGAGCAACAGT+TGG 0.654003 4_1:-65720936 Msa0564920:CDS
GAAGCACCACCATTGACGAA+AGG 0.656464 4_1:+65721937 None:intergenic
ATTCAGGTTAGGATTCAACT+GGG 0.656898 4_1:-65721766 Msa0564920:intron
GAGGGAAAATATCCATACAC+CGG 0.660454 4_1:-65718046 Msa0564920:CDS
AGTCATTTCACCTAGACCAA+CGG 0.665426 4_1:+65720689 None:intergenic
TTAGTCATGCAATTCAAGCG+GGG 0.668074 4_1:-65717631 Msa0564920:three_prime_UTR
TAACATGTACAATATCTCGT+GGG 0.675913 4_1:-65717351 Msa0564920:three_prime_UTR
AAATGAAGCGAAGAAAACGA+GGG 0.676255 4_1:+65722044 None:intergenic
ATGCTCAAGAATGAGGGTGT+TGG 0.676666 4_1:-65721712 Msa0564920:CDS
GAGAATAGTACCATGACATG+GGG 0.680357 4_1:+65717935 None:intergenic
AAGATGCAACCTGATGCTGA+GGG 0.680874 4_1:-65718064 Msa0564920:CDS
TCTAGGTGAAATGACTACTG+TGG 0.723327 4_1:-65720682 Msa0564920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATATTGTTTACTT+TGG - chr4_1:65718012-65718031 Msa0564920:CDS 10.0%
!!! ATTTATTCTTTTATAAAAAG+GGG + chr4_1:65718982-65719001 None:intergenic 10.0%
!!! ATAAATTCATTTTTTTTAAC+TGG - chr4_1:65720492-65720511 Msa0564920:intron 10.0%
!!! TAAATTCATTTTTTTTAACT+GGG - chr4_1:65720493-65720512 Msa0564920:intron 10.0%
!!! AATTAGTCAAACTTTTTATT+AGG - chr4_1:65718999-65719018 Msa0564920:intron 15.0%
!! TTCTGTTATCTATTAAAAAA+AGG + chr4_1:65719476-65719495 None:intergenic 15.0%
!!! TTAATTTCAATTTTGTAACT+TGG - chr4_1:65720089-65720108 Msa0564920:intron 15.0%
!!! TTTTTGCAGTATAATAAAAA+GGG + chr4_1:65721302-65721321 None:intergenic 15.0%
!!! TTTTTTGCAGTATAATAAAA+AGG + chr4_1:65721303-65721322 None:intergenic 15.0%
!!! TCTTTCATTTTTTGATGAAT+TGG - chr4_1:65717656-65717675 Msa0564920:three_prime_UTR 20.0%
!! AGAAAAAAAAACCTTATAGA+AGG + chr4_1:65717817-65717836 None:intergenic 20.0%
!! ATTTATTGAGTCATTGTATT+TGG - chr4_1:65718042-65718061 Msa0564920:CDS 20.0%
!! ATTGCAATATTCATCAAAAT+TGG - chr4_1:65718212-65718231 Msa0564920:intron 20.0%
!! TAAAAACACAATGTAATTGT+AGG + chr4_1:65718318-65718337 None:intergenic 20.0%
!!! ATAAAACATATCCTTTTGAA+TGG + chr4_1:65718363-65718382 None:intergenic 20.0%
!! AAACTAACAACAGTATATTA+TGG - chr4_1:65719233-65719252 Msa0564920:intron 20.0%
!! AACTAACAACAGTATATTAT+GGG - chr4_1:65719234-65719253 Msa0564920:intron 20.0%
!!! AAGGTTTTGAAATCTAATAT+TGG - chr4_1:65719394-65719413 Msa0564920:intron 20.0%
!! AAATCTAATATTGGATGATA+AGG - chr4_1:65719403-65719422 Msa0564920:intron 20.0%
!! AATCTAATATTGGATGATAA+GGG - chr4_1:65719404-65719423 Msa0564920:intron 20.0%
!! ATTTGATATGATGAATAAAG+GGG + chr4_1:65719560-65719579 None:intergenic 20.0%
!! CATTTGATATGATGAATAAA+GGG + chr4_1:65719561-65719580 None:intergenic 20.0%
!! TATTGTATTTACTAGCTAAT+TGG - chr4_1:65719614-65719633 Msa0564920:intron 20.0%
!!! TATTTCAGTTTTTTACAATC+AGG + chr4_1:65719763-65719782 None:intergenic 20.0%
!! AAAACTGAAATATTTCATCT+TGG - chr4_1:65719771-65719790 Msa0564920:intron 20.0%
!!! ATCTAAGTGTAATTTGTTAA+GGG + chr4_1:65720544-65720563 None:intergenic 20.0%
!! GTGAAATTATAGTTTGATTA+AGG + chr4_1:65720899-65720918 None:intergenic 20.0%
!!! ATTACCAATTTTCTTCTAAT+CGG - chr4_1:65721229-65721248 Msa0564920:intron 20.0%
!!! ATTGATTTTTTTATTGCCTT+TGG - chr4_1:65721594-65721613 Msa0564920:intron 20.0%
! AAACAAGGAAAACAATGAAA+AGG + chr4_1:65717282-65717301 None:intergenic 25.0%
!!! TTTTTTGATGAATTGGTATC+TGG - chr4_1:65717663-65717682 Msa0564920:three_prime_UTR 25.0%
!! TTTTTGATGAATTGGTATCT+GGG - chr4_1:65717664-65717683 Msa0564920:three_prime_UTR 25.0%
!!! GTGTTTTTTGTTTTGAATTC+AGG - chr4_1:65717719-65717738 Msa0564920:three_prime_UTR 25.0%
!!! TTTTGTTTTGAATTCAGGTT+AGG - chr4_1:65717724-65717743 Msa0564920:three_prime_UTR 25.0%
!!! TTGTGTTGATAATTTCAATG+TGG - chr4_1:65717914-65717933 Msa0564920:intron 25.0%
!!! TGTGTTGATAATTTCAATGT+GGG - chr4_1:65717915-65717934 Msa0564920:intron 25.0%
! ATATTCATCAAAATTGGATC+TGG - chr4_1:65718218-65718237 Msa0564920:intron 25.0%
!!! TATCCTTTTGAATGGATTAA+GGG + chr4_1:65718355-65718374 None:intergenic 25.0%
!!! ATATCCTTTTGAATGGATTA+AGG + chr4_1:65718356-65718375 None:intergenic 25.0%
!!! GTTATGGAATGCATTTTTTA+TGG - chr4_1:65718424-65718443 Msa0564920:intron 25.0%
!!! TGCATTTTTTATGGTGTTAA+CGG - chr4_1:65718433-65718452 Msa0564920:intron 25.0%
! ATGAGTCAACAATATCAAAA+TGG + chr4_1:65718856-65718875 None:intergenic 25.0%
!!! GAATACTTTTGAAACATCAA+TGG + chr4_1:65718953-65718972 None:intergenic 25.0%
! TTCTCAAATGATGAAAAGAT+AGG + chr4_1:65719196-65719215 None:intergenic 25.0%
!! ATACTGTTGTTAGTTTCAAA+AGG + chr4_1:65719229-65719248 None:intergenic 25.0%
! ACTAACAACAGTATATTATG+GGG - chr4_1:65719235-65719254 Msa0564920:intron 25.0%
!! TTTAATTTCTACTTTGCTGA+AGG - chr4_1:65719347-65719366 Msa0564920:intron 25.0%
! TTAATTTCTACTTTGCTGAA+GGG - chr4_1:65719348-65719367 Msa0564920:intron 25.0%
! CCATTTGATATGATGAATAA+AGG + chr4_1:65719562-65719581 None:intergenic 25.0%
! CCTTTATTCATCATATCAAA+TGG - chr4_1:65719559-65719578 Msa0564920:intron 25.0%
! AAATAGATACTATCTTGAGT+AGG - chr4_1:65719892-65719911 Msa0564920:intron 25.0%
! AATAGATACTATCTTGAGTA+GGG - chr4_1:65719893-65719912 Msa0564920:intron 25.0%
! AGAAATCAGTCTTAATTTCA+TGG - chr4_1:65719981-65720000 Msa0564920:intron 25.0%
! GAGCTTAAATTAATCCAAAT+TGG + chr4_1:65720008-65720027 None:intergenic 25.0%
! AGACTCAATTTATACAAGAT+TGG + chr4_1:65720054-65720073 None:intergenic 25.0%
!! AATGTATGTAAGTTCAAGTT+TGG - chr4_1:65720235-65720254 Msa0564920:intron 25.0%
! TATTGTCAAACTTGACATTA+GGG + chr4_1:65720337-65720356 None:intergenic 25.0%
!!! GATCTAAGTGTAATTTGTTA+AGG + chr4_1:65720545-65720564 None:intergenic 25.0%
! TGAAGAGGTTGTTTATTTAT+TGG - chr4_1:65720657-65720676 Msa0564920:intron 25.0%
! TGTGTGAACAATTCTTAAAA+CGG + chr4_1:65720724-65720743 None:intergenic 25.0%
! AACAACCTAATAAACATTGA+TGG - chr4_1:65720759-65720778 Msa0564920:CDS 25.0%
!! GTTTAAAATTAAGTGAGCTA+GGG + chr4_1:65720785-65720804 None:intergenic 25.0%
!! CTTTTTCTGTGTCTTTTAAA+AGG + chr4_1:65720818-65720837 None:intergenic 25.0%
! TGATAGAAACAAAAAACATG+TGG + chr4_1:65721034-65721053 None:intergenic 25.0%
! ATTGTACCATAATCACAAAT+TGG + chr4_1:65721116-65721135 None:intergenic 25.0%
! ATTTGTGATTATGGTACAAT+CGG - chr4_1:65721116-65721135 Msa0564920:intron 25.0%
!! AGAAAATTGGTAATCAGAAA+AGG + chr4_1:65721223-65721242 None:intergenic 25.0%
! ATTAATGTACACAATCCAAA+TGG + chr4_1:65721267-65721286 None:intergenic 25.0%
! TCAAGTTTATATACTGCTTA+TGG - chr4_1:65721663-65721682 Msa0564920:intron 25.0%
!!! TTGAGCATTGAATAATTTGT+TGG - chr4_1:65721781-65721800 Msa0564920:intron 25.0%
! TGATATCCAATTTCCAAAAA+GGG + chr4_1:65721819-65721838 None:intergenic 25.0%
! TTGATATCCAATTTCCAAAA+AGG + chr4_1:65721820-65721839 None:intergenic 25.0%
!!! TTTTGGAAATTGGATATCAA+TGG - chr4_1:65721820-65721839 Msa0564920:intron 25.0%
!!! GTATAAATCCCATTTTTGAA+TGG - chr4_1:65721969-65721988 Msa0564920:CDS 25.0%
!! TCATTGTTTTCCTTGTTTGT+TGG - chr4_1:65717284-65717303 Msa0564920:three_prime_UTR 30.0%
!! CATTGTTTTCCTTGTTTGTT+GGG - chr4_1:65717285-65717304 Msa0564920:three_prime_UTR 30.0%
!! GAGTTTTATAAGCTCTTGTT+TGG + chr4_1:65717370-65717389 None:intergenic 30.0%
! ATCAATAGGTTGAATAACAC+AGG + chr4_1:65717604-65717623 None:intergenic 30.0%
TCAACCTATTGATATGATCA+AGG - chr4_1:65717611-65717630 Msa0564920:three_prime_UTR 30.0%
CATACCTTGATCATATCAAT+AGG + chr4_1:65717618-65717637 None:intergenic 30.0%
! TTTGATTGCTTTGTTCTTAG+TGG - chr4_1:65717884-65717903 Msa0564920:intron 30.0%
!! TTTTAGATCTGTGAGTTGAA+GGG - chr4_1:65717987-65718006 Msa0564920:CDS 30.0%
!! TGAGTCATTGTATTTGGTTT+TGG - chr4_1:65718048-65718067 Msa0564920:CDS 30.0%
! ATCAAAATTGGATCTGGAAT+TGG - chr4_1:65718224-65718243 Msa0564920:intron 30.0%
!! GCTCTGAAAGAAATTACAAA+AGG + chr4_1:65718254-65718273 None:intergenic 30.0%
ACACAATGTAATTGTAGGAT+GGG + chr4_1:65718313-65718332 None:intergenic 30.0%
AACACAATGTAATTGTAGGA+TGG + chr4_1:65718314-65718333 None:intergenic 30.0%
CTTGACAAATAAAGCAATTG+AGG - chr4_1:65718486-65718505 Msa0564920:intron 30.0%
! TTGACACTTGCTAAAAGATT+TGG + chr4_1:65718896-65718915 None:intergenic 30.0%
! CTTTTATAAAAAGGGGTTTG+TGG + chr4_1:65718975-65718994 None:intergenic 30.0%
AACTCCACAAAAATGAAACA+GGG + chr4_1:65719134-65719153 None:intergenic 30.0%
AAACTCCACAAAAATGAAAC+AGG + chr4_1:65719135-65719154 None:intergenic 30.0%
AGTGGCAATAAAGAATCTTA+AGG - chr4_1:65719375-65719394 Msa0564920:intron 30.0%
! TTTTATCTACTGTGGTGTAA+AGG + chr4_1:65719526-65719545 None:intergenic 30.0%
TGTATTTACTAGCTAATTGG+TGG - chr4_1:65719617-65719636 Msa0564920:intron 30.0%
GTATTTACTAGCTAATTGGT+GGG - chr4_1:65719618-65719637 Msa0564920:intron 30.0%
!!! TACGAGTCTAGTTTTGAAAA+GGG + chr4_1:65719662-65719681 None:intergenic 30.0%
!!! ATACGAGTCTAGTTTTGAAA+AGG + chr4_1:65719663-65719682 None:intergenic 30.0%
ATACAACTATAGCACAAGAA+AGG + chr4_1:65719720-65719739 None:intergenic 30.0%
ATTTCATCTTGGTTCATGTT+TGG - chr4_1:65719782-65719801 Msa0564920:intron 30.0%
ACTTGAGTTTGAATTGAACT+AGG + chr4_1:65719948-65719967 None:intergenic 30.0%
CTTAATTTCATGGTCCAATT+TGG - chr4_1:65719991-65720010 Msa0564920:intron 30.0%
GTATTGTCAAACTTGACATT+AGG + chr4_1:65720338-65720357 None:intergenic 30.0%
!! CGATTGCTACAATTTAGTTT+TGG - chr4_1:65720599-65720618 Msa0564920:intron 30.0%
! GGTTTAAAATTAAGTGAGCT+AGG + chr4_1:65720786-65720805 None:intergenic 30.0%
!! GTTCTTTGAAATAGTGAATC+TGG - chr4_1:65720920-65720939 Msa0564920:CDS 30.0%
GAACATAGTACCATTGATAT+TGG + chr4_1:65720958-65720977 None:intergenic 30.0%
AACTAAATATGCCATCTCTT+GGG + chr4_1:65720999-65721018 None:intergenic 30.0%
TAACTAAATATGCCATCTCT+TGG + chr4_1:65721000-65721019 None:intergenic 30.0%
TGCATTCCAATTTGTGATTA+TGG - chr4_1:65721107-65721126 Msa0564920:intron 30.0%
! TTTCTAGTCTAAGTCATGTA+AGG - chr4_1:65721190-65721209 Msa0564920:intron 30.0%
TTCTAGTCTAAGTCATGTAA+GGG - chr4_1:65721191-65721210 Msa0564920:intron 30.0%
ATCTCCGATTAGAAGAAAAT+TGG + chr4_1:65721236-65721255 None:intergenic 30.0%
TGAGTCTTCACATAATCAAA+TGG + chr4_1:65721410-65721429 None:intergenic 30.0%
AATCCGGTGTAAAATTTGAA+GGG + chr4_1:65721521-65721540 None:intergenic 30.0%
TAGCTAGAAAAACATACCAA+AGG + chr4_1:65721613-65721632 None:intergenic 30.0%
AATTAGTCATGCAATTCAAG+CGG - chr4_1:65721868-65721887 Msa0564920:intron 30.0%
TATGATATGATATGATGCGT+TGG - chr4_1:65721932-65721951 Msa0564920:CDS 30.0%
CAAGTTCTCCATTCAAAAAT+GGG + chr4_1:65721980-65721999 None:intergenic 30.0%
ACAAGTTCTCCATTCAAAAA+TGG + chr4_1:65721981-65722000 None:intergenic 30.0%
ATAACATGTACAATATCTCG+TGG - chr4_1:65722149-65722168 Msa0564920:five_prime_UTR 30.0%
TAACATGTACAATATCTCGT+GGG - chr4_1:65722150-65722169 Msa0564920:five_prime_UTR 30.0%
TCTTCTTAACCCAACAAACA+AGG + chr4_1:65717297-65717316 None:intergenic 35.0%
!!! AAGCTCTTGTTTGGTTTTTG+TGG + chr4_1:65717361-65717380 None:intergenic 35.0%
AAATGAAGCGAAGAAAACGA+GGG + chr4_1:65717460-65717479 None:intergenic 35.0%
AACTTCGCTAATACCAACAA+TGG - chr4_1:65717488-65717507 Msa0564920:three_prime_UTR 35.0%
ACTTCGCTAATACCAACAAT+GGG - chr4_1:65717489-65717508 Msa0564920:three_prime_UTR 35.0%
! AATTCAGGTTAGGATTCAAC+TGG - chr4_1:65717734-65717753 Msa0564920:three_prime_UTR 35.0%
! ATTCAGGTTAGGATTCAACT+GGG - chr4_1:65717735-65717754 Msa0564920:three_prime_UTR 35.0%
!! CTTTTAGATCTGTGAGTTGA+AGG - chr4_1:65717986-65718005 Msa0564920:CDS 35.0%
! TTTAGATCTGTGAGTTGAAG+GGG - chr4_1:65717988-65718007 Msa0564920:CDS 35.0%
CTAAATCCATACCTCAACAA+AGG + chr4_1:65718081-65718100 None:intergenic 35.0%
TTGTTGAGGTATGGATTTAG+TGG - chr4_1:65718081-65718100 Msa0564920:CDS 35.0%
ATGCAAAGGACTAATGACAA+AGG + chr4_1:65718402-65718421 None:intergenic 35.0%
TTGTCATTAGTCCTTTGCAT+TGG - chr4_1:65718402-65718421 Msa0564920:intron 35.0%
!! TTAGTCCTTTGCATTGGTTA+TGG - chr4_1:65718408-65718427 Msa0564920:intron 35.0%
TCTACCAAAAAGCTCTATGT+GGG - chr4_1:65718533-65718552 Msa0564920:intron 35.0%
!! TCAAAGTGTTGAGTTCTTCA+AGG - chr4_1:65718786-65718805 Msa0564920:intron 35.0%
AAACAGCAAAGAAACAGAAC+AGG + chr4_1:65719097-65719116 None:intergenic 35.0%
!! GTTCTGTTTCTTTGCTGTTT+AGG - chr4_1:65719097-65719116 Msa0564920:intron 35.0%
!! AATGCCCTGTTTCATTTTTG+TGG - chr4_1:65719127-65719146 Msa0564920:intron 35.0%
ATTGACAACTTAGAGTGCAT+TGG + chr4_1:65719273-65719292 None:intergenic 35.0%
ACTGTGGTGTAAAGGAAATA+GGG + chr4_1:65719518-65719537 None:intergenic 35.0%
TACTGTGGTGTAAAGGAAAT+AGG + chr4_1:65719519-65719538 None:intergenic 35.0%
ATGAATAAAGGGGAAACTAG+GGG + chr4_1:65719550-65719569 None:intergenic 35.0%
GATGAATAAAGGGGAAACTA+GGG + chr4_1:65719551-65719570 None:intergenic 35.0%
TGATGAATAAAGGGGAAACT+AGG + chr4_1:65719552-65719571 None:intergenic 35.0%
!!! ACGAGTCTAGTTTTGAAAAG+GGG + chr4_1:65719661-65719680 None:intergenic 35.0%
ACTAGACTCGTATAGATCAA+AGG - chr4_1:65719670-65719689 Msa0564920:intron 35.0%
AGTTTGAATTGAACTAGGTC+TGG + chr4_1:65719943-65719962 None:intergenic 35.0%
TCATTGAGTTTCAAAAGTCG+GGG + chr4_1:65720030-65720049 None:intergenic 35.0%
CTCATTGAGTTTCAAAAGTC+GGG + chr4_1:65720031-65720050 None:intergenic 35.0%
GCTCATTGAGTTTCAAAAGT+CGG + chr4_1:65720032-65720051 None:intergenic 35.0%
! ATTGAGTCTTTTATGCTCAG+TGG - chr4_1:65720065-65720084 Msa0564920:intron 35.0%
! TTGAGTCTTTTATGCTCAGT+GGG - chr4_1:65720066-65720085 Msa0564920:intron 35.0%
!! CTTTCTGTATTGAGTTGAGT+AGG - chr4_1:65720283-65720302 Msa0564920:intron 35.0%
TAAGAGATACACGAAGATGA+AGG - chr4_1:65720371-65720390 Msa0564920:intron 35.0%
ACGAAGATGAAGGTTATATC+TGG - chr4_1:65720381-65720400 Msa0564920:intron 35.0%
!! GCATTTCTTTCTAGTTGGAT+AGG - chr4_1:65720515-65720534 Msa0564920:intron 35.0%
AATTGTAGCAATCGCACTAT+AGG + chr4_1:65720593-65720612 None:intergenic 35.0%
TTCACACATCAAAAGTGAAC+TGG - chr4_1:65720736-65720755 Msa0564920:CDS 35.0%
TAGGGCCATCAATGTTTATT+AGG + chr4_1:65720767-65720786 None:intergenic 35.0%
CAACTTACAGCAACAAAACA+AGG + chr4_1:65720846-65720865 None:intergenic 35.0%
!!! CTTGTTTTGTTGCTGTAAGT+TGG - chr4_1:65720844-65720863 Msa0564920:CDS 35.0%
!! AGTGAATCTGGTTCTTTATC+TGG - chr4_1:65720932-65720951 Msa0564920:CDS 35.0%
CTTTATCTGGCCAATATCAA+TGG - chr4_1:65720945-65720964 Msa0564920:CDS 35.0%
AACAAAAAACATGTGGCAAC+AGG + chr4_1:65721027-65721046 None:intergenic 35.0%
GTTCAAGACACATATTGCAA+GGG + chr4_1:65721060-65721079 None:intergenic 35.0%
AGTTCAAGACACATATTGCA+AGG + chr4_1:65721061-65721080 None:intergenic 35.0%
CGGAGATATGATATTCCATT+TGG - chr4_1:65721249-65721268 Msa0564920:intron 35.0%
AGAAGAGATTCAGTAGCAAA+TGG + chr4_1:65721339-65721358 None:intergenic 35.0%
TGCTACTGAATCTCTTCTTT+AGG - chr4_1:65721341-65721360 Msa0564920:CDS 35.0%
GAATCCGGTGTAAAATTTGA+AGG + chr4_1:65721522-65721541 None:intergenic 35.0%
AGAGAATAGTACCATGACAT+GGG + chr4_1:65721570-65721589 None:intergenic 35.0%
AAGAGAATAGTACCATGACA+TGG + chr4_1:65721571-65721590 None:intergenic 35.0%
!! TAATTTGTTGGCTGTGTTGT+AGG - chr4_1:65721793-65721812 Msa0564920:intron 35.0%
ATTAGTCATGCAATTCAAGC+GGG - chr4_1:65721869-65721888 Msa0564920:intron 35.0%
GAAGTGAAGAACGAATCTAG+TGG + chr4_1:65717395-65717414 None:intergenic 40.0%
GAAATGAAGCGAAGAAAACG+AGG + chr4_1:65717461-65717480 None:intergenic 40.0%
ATCTACCATGCTCAAGAATG+AGG - chr4_1:65717782-65717801 Msa0564920:CDS 40.0%
TCTACCATGCTCAAGAATGA+GGG - chr4_1:65717783-65717802 Msa0564920:CDS 40.0%
CAACTCACAGATCTAAAAGC+AGG + chr4_1:65717985-65718004 None:intergenic 40.0%
TTGGACTTCATCCTTTGTTG+AGG - chr4_1:65718067-65718086 Msa0564920:CDS 40.0%
CTTCATCCTTTGTTGAGGTA+TGG - chr4_1:65718072-65718091 Msa0564920:CDS 40.0%
TAAGCTGAATCACTTCTTGC+AGG - chr4_1:65718108-65718127 Msa0564920:CDS 40.0%
AAGCTGAATCACTTCTTGCA+GGG - chr4_1:65718109-65718128 Msa0564920:CDS 40.0%
CAACTCACCTAAATGTTCCA+AGG + chr4_1:65718180-65718199 None:intergenic 40.0%
CAGCCCTTAATCCATTCAAA+AGG - chr4_1:65718349-65718368 Msa0564920:intron 40.0%
GCATTCCATAACCAATGCAA+AGG + chr4_1:65718416-65718435 None:intergenic 40.0%
! ATGGTGTTAACGGTTGTCAT+TGG - chr4_1:65718443-65718462 Msa0564920:intron 40.0%
AAAGCAATTGAGGCCAATGA+TGG - chr4_1:65718496-65718515 Msa0564920:intron 40.0%
!! CATAGAGCTTTTTGGTAGAG+TGG + chr4_1:65718532-65718551 None:intergenic 40.0%
CTCTACCAAAAAGCTCTATG+TGG - chr4_1:65718532-65718551 Msa0564920:intron 40.0%
ATGAAGGGATTCTTTCACTG+TGG - chr4_1:65718698-65718717 Msa0564920:intron 40.0%
AGTCATTTCACCTAGACCAA+CGG + chr4_1:65718815-65718834 None:intergenic 40.0%
TCTAGGTGAAATGACTACTG+TGG - chr4_1:65718819-65718838 Msa0564920:intron 40.0%
TAGGGAGGAAGATTAGATGA+TGG + chr4_1:65719500-65719519 None:intergenic 40.0%
! CTAGGGGATTTTATCTACTG+TGG + chr4_1:65719534-65719553 None:intergenic 40.0%
GATACTATCTTGAGTAGGGT+TGG - chr4_1:65719897-65719916 Msa0564920:intron 40.0%
TGTCAAACTTGACATTAGGG+CGG + chr4_1:65720334-65720353 None:intergenic 40.0%
! ACTGGGCATTTCTTTCTAGT+TGG - chr4_1:65720510-65720529 Msa0564920:intron 40.0%
TAACTCAGTGAACTGTGAAG+AGG - chr4_1:65720642-65720661 Msa0564920:intron 40.0%
!! TCTTTTAAAAGGCTGACGCA+TGG + chr4_1:65720807-65720826 None:intergenic 40.0%
TATGGTACAATCGGTAGTCT+TGG - chr4_1:65721125-65721144 Msa0564920:intron 40.0%
TTAGGTGCAAGTAGTGTATC+TGG - chr4_1:65721359-65721378 Msa0564920:CDS 40.0%
GAGGGAAAATATCCATACAC+CGG - chr4_1:65721455-65721474 Msa0564920:intron 40.0%
! GGACCCTTCAAATTTTACAC+CGG - chr4_1:65721515-65721534 Msa0564920:intron 40.0%
GAGAATAGTACCATGACATG+GGG + chr4_1:65721569-65721588 None:intergenic 40.0%
!!! TTTTCTCCAATTTCTGGAGC+TGG + chr4_1:65721712-65721731 None:intergenic 40.0%
!! TGTAGGCCCTTTTTGGAAAT+TGG - chr4_1:65721810-65721829 Msa0564920:intron 40.0%
TTAGTCATGCAATTCAAGCG+GGG - chr4_1:65721870-65721889 Msa0564920:intron 40.0%
ATGTGTCGAAAAGATGTCTG+AGG + chr4_1:65722040-65722059 None:intergenic 40.0%
TTCTTCTCGTCTCCCATTGT+TGG + chr4_1:65717504-65717523 None:intergenic 45.0%
AAACCAGTAGCAACAGGCTT+AGG + chr4_1:65717528-65717547 None:intergenic 45.0%
! TTGACGAAAGGCTTGATGGT+TGG + chr4_1:65717555-65717574 None:intergenic 45.0%
ACCATCAAGCCTTTCGTCAA+TGG - chr4_1:65717555-65717574 Msa0564920:three_prime_UTR 45.0%
ACCATTGACGAAAGGCTTGA+TGG + chr4_1:65717559-65717578 None:intergenic 45.0%
ATCAAGCCTTTCGTCAATGG+TGG - chr4_1:65717558-65717577 Msa0564920:three_prime_UTR 45.0%
GTTAGGATTCAACTGGGTCA+AGG - chr4_1:65717741-65717760 Msa0564920:three_prime_UTR 45.0%
AACACCCTCATTCTTGAGCA+TGG + chr4_1:65717790-65717809 None:intergenic 45.0%
! ATGCTCAAGAATGAGGGTGT+TGG - chr4_1:65717789-65717808 Msa0564920:CDS 45.0%
!! AGCTTTTTGGTAGAGTGGCA+GGG + chr4_1:65718527-65718546 None:intergenic 45.0%
! TCAGCCCACATAGAGCTTTT+TGG + chr4_1:65718540-65718559 None:intergenic 45.0%
!! AGTTGGTAGTCCAGCTGATT+TGG - chr4_1:65718582-65718601 Msa0564920:intron 45.0%
TTTGGCACTCATTCGTATGC+AGG - chr4_1:65718600-65718619 Msa0564920:intron 45.0%
!! GGAAGGCGTTTGTGTAGTTT+CGG + chr4_1:65718654-65718673 None:intergenic 45.0%
AAACTACACAAACGCCTTCC+AGG - chr4_1:65718654-65718673 Msa0564920:intron 45.0%
TTCCAGGCACTTTACCGTAT+CGG - chr4_1:65718670-65718689 Msa0564920:intron 45.0%
GGGATTCTTTCACTGTGGAA+AGG - chr4_1:65718703-65718722 Msa0564920:intron 45.0%
!! TTTCACTGTGGAAAGGTGCT+GGG - chr4_1:65718710-65718729 Msa0564920:intron 45.0%
! AAGAGCCATGGCATTGAACA+TGG - chr4_1:65718744-65718763 Msa0564920:intron 45.0%
! AGAGCCATGGCATTGAACAT+GGG - chr4_1:65718745-65718764 Msa0564920:intron 45.0%
GAGTTCTTCAAGGATACCGT+TGG - chr4_1:65718796-65718815 Msa0564920:intron 45.0%
! TTCAAGGATACCGTTGGTCT+AGG - chr4_1:65718802-65718821 Msa0564920:intron 45.0%
GGTGAAATGACTACTGTGGT+TGG - chr4_1:65718823-65718842 Msa0564920:intron 45.0%
ACTTTGCTGAAGGGATTGAG+TGG - chr4_1:65719357-65719376 Msa0564920:intron 45.0%
GTGGTGTAAAGGAAATAGGG+AGG + chr4_1:65719515-65719534 None:intergenic 45.0%
!! TCACTCTCTAGCTAGCTTTC+TGG - chr4_1:65719586-65719605 Msa0564920:intron 45.0%
GAATTGAACTAGGTCTGGCT+TGG + chr4_1:65719938-65719957 None:intergenic 45.0%
!! AGAAGCATCGCTGTTATTCG+AGG - chr4_1:65720190-65720209 Msa0564920:intron 45.0%
!! GTATTGAGTTGAGTAGGCAC+AGG - chr4_1:65720289-65720308 Msa0564920:intron 45.0%
CTTTATGCACACCCAAGAGA+TGG - chr4_1:65720985-65721004 Msa0564920:CDS 45.0%
AAAGATGCAACCTGATGCTG+AGG - chr4_1:65721436-65721455 Msa0564920:intron 45.0%
AAGATGCAACCTGATGCTGA+GGG - chr4_1:65721437-65721456 Msa0564920:intron 45.0%
! GGATATTTTCCCTCAGCATC+AGG + chr4_1:65721449-65721468 None:intergenic 45.0%
GCTGTCAAGACCTTCAAATC+TGG - chr4_1:65721491-65721510 Msa0564920:intron 45.0%
GTCAAGACCTTCAAATCTGG+AGG - chr4_1:65721494-65721513 Msa0564920:intron 45.0%
CAATCCTGACACAGTAGACA+GGG + chr4_1:65721544-65721563 None:intergenic 45.0%
ACTGCTTATGGCAGATGACA+TGG - chr4_1:65721675-65721694 Msa0564920:intron 45.0%
!!! AATTTATTCTTTTATAAAAA+GGG + chr4_1:65718983-65719002 None:intergenic 5.0%
!!! TAATTTATTCTTTTATAAAA+AGG + chr4_1:65718984-65719003 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAGAT+AGG + chr4_1:65720685-65720704 None:intergenic 5.0%
!!! TTTTTATGTATTTTTTAATT+TGG - chr4_1:65722118-65722137 Msa0564920:five_prime_UTR 5.0%
!!! TTTTATGTATTTTTTAATTT+GGG - chr4_1:65722119-65722138 Msa0564920:five_prime_UTR 5.0%
AAGCCTAAGCCTGTTGCTAC+TGG - chr4_1:65717522-65717541 Msa0564920:three_prime_UTR 50.0%
!! AGCCTGTTGCTACTGGTTTC+TGG - chr4_1:65717529-65717548 Msa0564920:three_prime_UTR 50.0%
! GAAGCACCACCATTGACGAA+AGG + chr4_1:65717567-65717586 None:intergenic 50.0%
! TTCGTCAATGGTGGTGCTTC+TGG - chr4_1:65717567-65717586 Msa0564920:three_prime_UTR 50.0%
!! GGGTGTTGGTGCCTTCTATA+AGG - chr4_1:65717803-65717822 Msa0564920:CDS 50.0%
TTCTTGCAGGGTCTATCAGC+TGG - chr4_1:65718121-65718140 Msa0564920:CDS 50.0%
TCTTGCAGGGTCTATCAGCT+GGG - chr4_1:65718122-65718141 Msa0564920:CDS 50.0%
GTCTATCAGCTGGGTTACTC+AGG - chr4_1:65718131-65718150 Msa0564920:CDS 50.0%
AAATGTTCCAAGGCGTGCAG+TGG + chr4_1:65718170-65718189 None:intergenic 50.0%
CTGCACGCCTTGGAACATTT+AGG - chr4_1:65718170-65718189 Msa0564920:intron 50.0%
!! GCTTTTTGGTAGAGTGGCAG+GGG + chr4_1:65718526-65718545 None:intergenic 50.0%
!! GAGCTTTTTGGTAGAGTGGC+AGG + chr4_1:65718528-65718547 None:intergenic 50.0%
GGTGCAATTGGAGCAACAGT+TGG - chr4_1:65718565-65718584 Msa0564920:intron 50.0%
CGAATGAGTGCCAAATCAGC+TGG + chr4_1:65718595-65718614 None:intergenic 50.0%
! GATACGGTAAAGTGCCTGGA+AGG + chr4_1:65718671-65718690 None:intergenic 50.0%
! TACCGTATCGGTGCAGATGA+AGG - chr4_1:65718682-65718701 Msa0564920:intron 50.0%
! ACCGTATCGGTGCAGATGAA+GGG - chr4_1:65718683-65718702 Msa0564920:intron 50.0%
! TCCCTTCATCTGCACCGATA+CGG + chr4_1:65718687-65718706 None:intergenic 50.0%
! CTTTCACTGTGGAAAGGTGC+TGG - chr4_1:65718709-65718728 Msa0564920:intron 50.0%
GCCTACTGTAGTAAGAGCCA+TGG - chr4_1:65718732-65718751 Msa0564920:intron 50.0%
GCCATGGCTCTTACTACAGT+AGG + chr4_1:65718736-65718755 None:intergenic 50.0%
! GAGCCATGGCATTGAACATG+GGG - chr4_1:65718746-65718765 Msa0564920:intron 50.0%
CATCCCCATGTTCAATGCCA+TGG + chr4_1:65718752-65718771 None:intergenic 50.0%
AGCATCGCTGTTATTCGAGG+CGG - chr4_1:65720193-65720212 Msa0564920:intron 50.0%
AGTTGAGTAGGCACAGGAGT+TGG - chr4_1:65720295-65720314 Msa0564920:intron 50.0%
GAAGGGTCCTCCAGATTTGA+AGG + chr4_1:65721504-65721523 None:intergenic 50.0%
GACACAGTAGACAGGGAATC+CGG + chr4_1:65721537-65721556 None:intergenic 50.0%
GATTCCCTGTCTACTGTGTC+AGG - chr4_1:65721537-65721556 Msa0564920:intron 50.0%
GCAATCCTGACACAGTAGAC+AGG + chr4_1:65721545-65721564 None:intergenic 50.0%
!! CCAATTTCTGGAGCTGGTTG+AGG + chr4_1:65721706-65721725 None:intergenic 50.0%
CCTCAACCAGCTCCAGAAAT+TGG - chr4_1:65721703-65721722 Msa0564920:CDS 50.0%
! GCTGTGTTGTAGGCCCTTTT+TGG - chr4_1:65721803-65721822 Msa0564920:intron 50.0%
GGCCAGAAACCAGTAGCAAC+AGG + chr4_1:65717534-65717553 None:intergenic 55.0%
ATCAGCTGGGTTACTCAGGC+AGG - chr4_1:65718135-65718154 Msa0564920:CDS 55.0%
ACTTACACCACTGCACGCCT+TGG - chr4_1:65718160-65718179 Msa0564920:intron 55.0%
! TAGTTTCGGCGCTGAGCAAG+AGG + chr4_1:65718640-65718659 None:intergenic 55.0%
! CACCGATACGGTAAAGTGCC+TGG + chr4_1:65718675-65718694 None:intergenic 55.0%
CAGTCAAGAGAGCCGGTGTA+TGG + chr4_1:65721470-65721489 None:intergenic 55.0%
GACAGCACAGTCAAGAGAGC+CGG + chr4_1:65721477-65721496 None:intergenic 55.0%
CAGGATTGCTCCCCATGTCA+TGG - chr4_1:65721556-65721575 Msa0564920:intron 55.0%
TGGCAGGGGCTTGCCATCAT+TGG + chr4_1:65718512-65718531 None:intergenic 60.0%
! GCTCTATGTGGGCTGACTGC+TGG - chr4_1:65718544-65718563 Msa0564920:intron 60.0%
GGGCTGACTGCTGGTGCAAT+TGG - chr4_1:65718553-65718572 Msa0564920:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 65717235 65722288 65717235 ID=Msa0564920;Name=Msa0564920
chr4_1 mRNA 65717235 65722288 65717235 ID=Msa0564920-mRNA-1;Parent=Msa0564920;Name=Msa0564920-mRNA-1;_AED=0.23;_eAED=0.23;_QI=272|1|1|1|1|1|6|543|301
chr4_1 exon 65717235 65717834 65717235 ID=Msa0564920-mRNA-1:exon:21252;Parent=Msa0564920-mRNA-1
chr4_1 exon 65717946 65718160 65717946 ID=Msa0564920-mRNA-1:exon:21251;Parent=Msa0564920-mRNA-1
chr4_1 exon 65720679 65721040 65720679 ID=Msa0564920-mRNA-1:exon:21250;Parent=Msa0564920-mRNA-1
chr4_1 exon 65721332 65721393 65721332 ID=Msa0564920-mRNA-1:exon:21249;Parent=Msa0564920-mRNA-1
chr4_1 exon 65721699 65721782 65721699 ID=Msa0564920-mRNA-1:exon:21248;Parent=Msa0564920-mRNA-1
chr4_1 exon 65721891 65722288 65721891 ID=Msa0564920-mRNA-1:exon:21247;Parent=Msa0564920-mRNA-1
chr4_1 five_prime_UTR 65722017 65722288 65722017 ID=Msa0564920-mRNA-1:five_prime_utr;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65721891 65722016 65721891 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65721699 65721782 65721699 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65721332 65721393 65721332 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65720679 65721040 65720679 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65717946 65718160 65717946 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 CDS 65717778 65717834 65717778 ID=Msa0564920-mRNA-1:cds;Parent=Msa0564920-mRNA-1
chr4_1 three_prime_UTR 65717235 65717777 65717235 ID=Msa0564920-mRNA-1:three_prime_utr;Parent=Msa0564920-mRNA-1
Gene Sequence

>Msa0564920

ATGGGAGACGAGAAGAAGCCTAAGCCTGTTGCTACTGGTTTCTGGCCAACCATCAAGCCTTTCGTCAATGGTGGTGCTTCTGGTATGCTCGCTACCTGTGTTATTCAACCTATTGATATGATCAAGGTTAGGATTCAACTGGGTCAAGGTTCAGCTGCTAGTGTCACATCTACCATGCTCAAGAATGAGGGTGTTGGTGCCTTCTATAAGGGTCTATCAGCTGGGTTACTCAGGCAGGCTACTTACACCACTGCACGCCTTGGAACATTTAGAATCTTGACAAATAAAGCAATTGAGGCCAATGATGGCAAGCCCCTGCCACTCTACCAAAAAGCTCTATGTGGGCTGACTGCTGGTGCAATTGGAGCAACAGTTGGTAGTCCAGCTGATTTGGCACTCATTCGTATGCAGGCTGATGCGACTTTACCTCTTGCTCAGCGCCGAAACTACACAAACGCCTTCCAGGCACTTTACCGTATCGGTGCAGATGAAGGGATTCTTTCACTGTGGAAAGGTGCTGGGCCTACTGTAGTAAGAGCCATGGCATTGAACATGGGGATGCTTGCTTCTTATGATCAAAGTGTTGAGTTCTTCAAGGATACCGTTGGTCTAGGTGAAATGACTACTGTGGTTGGTGCAAGTAGTGTATCTGGATTTTTCGCAGCAGCTTGCAGTTTGCCATTTGATTATGTGAAGACTCAAATTCAAAAGATGCAACCTGATGCTGAGGGAAAATATCCATACACCGGCTCTCTTGACTGTGCTGTCAAGACCTTCAAATCTGGAGGACCCTTCAAATTTTACACCGGATTCCCTGTCTACTGTGTCAGGATTGCTCCCCATGTCATGATGACATGGATTTTCCTCAACCAGCTCCAGAAATTGGAGAAAAGTTATGGGTTATAG
Protein sequence

>Msa0564920

MGDEKKPKPVATGFWPTIKPFVNGGASGMLATCVIQPIDMIKVRIQLGQGSAASVTSTMLKNEGVGAFYKGLSAGLLRQATYTTARLGTFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGATVGSPADLALIRMQADATLPLAQRRNYTNAFQALYRIGADEGILSLWKGAGPTVVRAMALNMGMLASYDQSVEFFKDTVGLGEMTTVVGASSVSGFFAAACSLPFDYVKTQIQKMQPDAEGKYPYTGSLDCAVKTFKSGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQLQKLEKSYGL*