Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713900 | XP_003611587.1 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713900 | sp|Q9FJX3|VDAC2_ARATH | 65.942 | 276 | 94 | 0 | 1 | 276 | 1 | 276 | 8.49e-139 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713900 | G7K2J4 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618020 | Msa0713900 | 0.822680 | 2.081194e-53 | -8.615850e-47 |
| Msa0701040 | Msa0713900 | 0.805384 | 1.370344e-49 | -8.615850e-47 |
| Msa0713900 | Msa0756160 | 0.924116 | 1.081498e-89 | -8.615850e-47 |
| Msa0713900 | Msa0810950 | 0.808838 | 2.543476e-50 | -8.615850e-47 |
| Msa0713900 | Msa0835180 | 0.835112 | 2.028295e-56 | -8.615850e-47 |
| Msa0713900 | Msa0902370 | 0.812176 | 4.836508e-51 | -8.615850e-47 |
| Msa0713900 | Msa1358720 | 0.814321 | 1.635339e-51 | -8.615850e-47 |
| Msa0235970 | Msa0713900 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0256570 | Msa0713900 | -0.808268 | 3.366979e-50 | -8.615850e-47 |
| Msa0295710 | Msa0713900 | -0.806658 | 7.391041e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713900 | MtrunA17_Chr5g0401201 | 99.638 | 276 | 1 | 0 | 1 | 276 | 1 | 276 | 0.0 | 545 |
| Msa0713900 | MtrunA17_Chr1g0152591 | 56.364 | 275 | 120 | 0 | 2 | 276 | 3 | 277 | 1.07e-110 | 320 |
| Msa0713900 | MtrunA17_Chr6g0452811 | 49.281 | 278 | 139 | 1 | 1 | 276 | 1 | 278 | 1.03e-92 | 275 |
| Msa0713900 | MtrunA17_Chr7g0216561 | 50.182 | 275 | 137 | 0 | 2 | 276 | 3 | 277 | 2.51e-91 | 271 |
| Msa0713900 | MtrunA17_Chr8g0362621 | 41.304 | 276 | 162 | 0 | 1 | 276 | 1 | 276 | 1.36e-76 | 234 |
| Msa0713900 | MtrunA17_Chr4g0072511 | 42.652 | 279 | 157 | 2 | 1 | 276 | 1 | 279 | 8.42e-75 | 229 |
| Msa0713900 | MtrunA17_Chr4g0060181 | 26.148 | 283 | 163 | 5 | 1 | 276 | 1 | 244 | 7.48e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713900 | AT5G67500.3 | 65.942 | 276 | 94 | 0 | 1 | 276 | 1 | 276 | 8.63e-140 | 395 |
| Msa0713900 | AT5G67500.2 | 60.066 | 303 | 94 | 1 | 1 | 276 | 1 | 303 | 6.97e-134 | 381 |
| Msa0713900 | AT5G67500.1 | 65.543 | 267 | 92 | 0 | 1 | 267 | 1 | 267 | 1.85e-133 | 380 |
| Msa0713900 | AT5G15090.1 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 7.34e-90 | 268 |
| Msa0713900 | AT5G15090.2 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 7.34e-90 | 268 |
| Msa0713900 | AT3G01280.1 | 48.551 | 276 | 142 | 0 | 1 | 276 | 1 | 276 | 3.75e-88 | 264 |
| Msa0713900 | AT5G57490.1 | 46.739 | 276 | 145 | 1 | 1 | 276 | 1 | 274 | 3.24e-84 | 253 |
| Msa0713900 | AT3G49920.1 | 47.464 | 276 | 95 | 3 | 1 | 276 | 1 | 226 | 1.29e-80 | 243 |
| Msa0713900 | AT3G49920.2 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.68e-28 | 106 |
| Msa0713900 | AT3G49920.4 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.68e-28 | 106 |
| Msa0713900 | AT3G49920.3 | 67.123 | 73 | 24 | 0 | 1 | 73 | 1 | 73 | 3.29e-28 | 104 |
Find 91 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATTAGTTTCACGAAAT+TGG | 0.171691 | 5_1:-6380426 | Msa0713900:CDS |
| AAGTCAGTGCTGACTATTTC+TGG | 0.215709 | 5_1:-6380071 | Msa0713900:CDS |
| TCTTCTTGATTTGGTCTAGA+TGG | 0.272788 | 5_1:+6380249 | None:intergenic |
| CAGCAGCACTCTTCTTGATT+TGG | 0.283867 | 5_1:+6380240 | None:intergenic |
| TTCCACAGATGAGCGTTTCT+AGG | 0.313600 | 5_1:-6379884 | Msa0713900:three_prime_UTR |
| AAGCTGCCTGATTATAGTTC+TGG | 0.319469 | 5_1:-6380699 | Msa0713900:CDS |
| TTTGGCTTTCTTGCCGATAT+CGG | 0.333599 | 5_1:+6384422 | None:intergenic |
| GTAGTAGATATTCTGATATA+TGG | 0.350500 | 5_1:-6379765 | Msa0713900:three_prime_UTR |
| AATATGAAAATAGAACTTAA+AGG | 0.369433 | 5_1:+6379701 | None:intergenic |
| TGCACTGTGCTTCACGAAAC+AGG | 0.370007 | 5_1:+6384548 | None:intergenic |
| AAGAAAGGAGGACTCTCAAC+TGG | 0.374633 | 5_1:-6380928 | Msa0713900:CDS |
| TCGTCTTTGTGGATGGAAAA+AGG | 0.380002 | 5_1:+6380733 | None:intergenic |
| TCTGATTTGTTGAGAACCTT+CGG | 0.383141 | 5_1:+6380204 | None:intergenic |
| GGTTCTCCAACCCTTGCATT+TGG | 0.392286 | 5_1:-6380500 | Msa0713900:CDS |
| AATTGAAGCTATCGTCTTTG+TGG | 0.392722 | 5_1:+6380722 | None:intergenic |
| GTTTCTAGGTTCTTTCTGAT+TGG | 0.394439 | 5_1:-6379870 | Msa0713900:three_prime_UTR |
| GTGGCAGAAACATCAAAGAT+AGG | 0.400234 | 5_1:+6380527 | None:intergenic |
| CTGATTTGTTGAGAACCTTC+GGG | 0.400674 | 5_1:+6380205 | None:intergenic |
| ATTATTCTACCCTCCCTTCA+AGG | 0.401275 | 5_1:+6379910 | None:intergenic |
| CAGTGTAGCGACTGAGGTTA+AGG | 0.410879 | 5_1:+6380559 | None:intergenic |
| GAAATAGTCAGCACTGACTT+TGG | 0.413358 | 5_1:+6380074 | None:intergenic |
| CAATAACTTGAATCAACCTA+TGG | 0.418971 | 5_1:-6379836 | Msa0713900:three_prime_UTR |
| AATGTGTGTTAGAGAGAGAA+AGG | 0.420532 | 5_1:+6384508 | None:intergenic |
| AAATAGTCAGCACTGACTTT+GGG | 0.425846 | 5_1:+6380075 | None:intergenic |
| CCGGGTCTCTACTCCGATAT+CGG | 0.434053 | 5_1:-6384435 | Msa0713900:CDS |
| AGCAATGGCCAACCCAAACT+TGG | 0.435980 | 5_1:+6380016 | None:intergenic |
| CTTGCATTTGGTGCTGAGGC+AGG | 0.440987 | 5_1:-6380488 | Msa0713900:CDS |
| ACTTCAACTGCTTTGAAGAA+AGG | 0.441282 | 5_1:-6380943 | Msa0713900:CDS |
| AACAAATCAGAACACTATTA+CGG | 0.464512 | 5_1:-6380192 | Msa0713900:CDS |
| GTTTCATCTTACAGCACTAC+TGG | 0.464789 | 5_1:-6384274 | Msa0713900:CDS |
| TCAACAATCAAGGAAAGGTT+GGG | 0.467034 | 5_1:-6380121 | Msa0713900:CDS |
| GCAGGCTATGATACTAAATC+TGG | 0.479364 | 5_1:-6380470 | Msa0713900:CDS |
| ATCGAAGATGAGCAAGGGAC+CGG | 0.481251 | 5_1:-6384454 | Msa0713900:exon |
| TCTTGATTTGGTCTAGATGG+TGG | 0.484846 | 5_1:+6380252 | None:intergenic |
| TTTGATGTTTCTGCCACTGT+TGG | 0.487886 | 5_1:-6380521 | Msa0713900:CDS |
| TTTGGTGGCCCTTGAAGGGA+GGG | 0.490932 | 5_1:-6379919 | Msa0713900:three_prime_UTR |
| TGGCAGAAACATCAAAGATA+GGG | 0.491347 | 5_1:+6380528 | None:intergenic |
| AACCCTTGCATTTGGTGCTG+AGG | 0.491987 | 5_1:-6380492 | Msa0713900:CDS |
| TTCAACAATCAAGGAAAGGT+TGG | 0.493974 | 5_1:-6380122 | Msa0713900:CDS |
| AGGACTCTCAACTGGGGATG+TGG | 0.494637 | 5_1:-6380920 | Msa0713900:CDS |
| CTTTCCTATCAGTGGCGACA+AGG | 0.504369 | 5_1:-6380300 | Msa0713900:intron |
| AAAGCTAGGTTCAACAATCA+AGG | 0.508554 | 5_1:-6380131 | Msa0713900:CDS |
| CTCTCAACTGGGGATGTGGC+AGG | 0.509688 | 5_1:-6380916 | Msa0713900:CDS |
| CAAGAAGAGTGCTGCTGTTG+TGG | 0.509776 | 5_1:-6380234 | Msa0713900:CDS |
| TACAATGTAAGAAGCAAAGC+AGG | 0.516555 | 5_1:+6379785 | None:intergenic |
| ACCTTGCCAGAACTATAATC+AGG | 0.517672 | 5_1:+6380693 | None:intergenic |
| AAGGTAAAACACAATAGATA+AGG | 0.519952 | 5_1:+6379720 | None:intergenic |
| AGTAGTGCTGTAAGATGAAA+CGG | 0.520738 | 5_1:+6384276 | None:intergenic |
| TGATTTGGTCTAGATGGTGG+AGG | 0.521733 | 5_1:+6380255 | None:intergenic |
| GAAGCTATCGTCTTTGTGGA+TGG | 0.527003 | 5_1:+6380726 | None:intergenic |
| TGAGGTTGATACCAAGGCCC+TGG | 0.529736 | 5_1:-6380048 | Msa0713900:CDS |
| TTATTCTACCCTCCCTTCAA+GGG | 0.531937 | 5_1:+6379911 | None:intergenic |
| CAGAACACTATTACGGTTGG+AGG | 0.533154 | 5_1:-6380185 | Msa0713900:CDS |
| TCTAAAATCGAAGATGAGCA+AGG | 0.548154 | 5_1:-6384460 | Msa0713900:exon |
| CTGCCTCAGCACCAAATGCA+AGG | 0.548233 | 5_1:+6380489 | None:intergenic |
| AATCAGAACACTATTACGGT+TGG | 0.550635 | 5_1:-6380188 | Msa0713900:CDS |
| AGGTTAAGGTAGCATGGTCG+TGG | 0.557344 | 5_1:+6380573 | None:intergenic |
| TCAGCACCAAATGCAAGGGT+TGG | 0.562271 | 5_1:+6380494 | None:intergenic |
| GCAATGGCCAACCCAAACTT+GGG | 0.566984 | 5_1:+6380017 | None:intergenic |
| ACTTCAAGGTTTGAGAGCAA+TGG | 0.567035 | 5_1:+6380001 | None:intergenic |
| AGAAAGGAGGACTCTCAACT+GGG | 0.567353 | 5_1:-6380927 | Msa0713900:CDS |
| TTCTGGTGAGGTTGATACCA+AGG | 0.578817 | 5_1:-6380054 | Msa0713900:CDS |
| TCGAAGATGAGCAAGGGACC+GGG | 0.581110 | 5_1:-6384453 | Msa0713900:exon |
| AAATGGGAAACGGAAGCCAT+AGG | 0.584624 | 5_1:+6379820 | None:intergenic |
| CTAGCTTTGATCTGTGTCAG+AGG | 0.591430 | 5_1:+6380146 | None:intergenic |
| ACAATAGATAAGGATCCTCT+CGG | 0.592510 | 5_1:+6379730 | None:intergenic |
| CCGATATCGGAGTAGAGACC+CGG | 0.593325 | 5_1:+6384435 | None:intergenic |
| AGTGCTGACTATTTCTGGTG+AGG | 0.600743 | 5_1:-6380066 | Msa0713900:CDS |
| AACCTAGAAACGCTCATCTG+TGG | 0.604343 | 5_1:+6379882 | None:intergenic |
| CAACAATCAAGGAAAGGTTG+GGG | 0.608378 | 5_1:-6380120 | Msa0713900:CDS |
| TGCCTCAGCACCAAATGCAA+GGG | 0.611427 | 5_1:+6380490 | None:intergenic |
| TAGGTTCAACAATCAAGGAA+AGG | 0.612340 | 5_1:-6380126 | Msa0713900:CDS |
| TCAACTGCTTTGAAGAAAGG+AGG | 0.613940 | 5_1:-6380940 | Msa0713900:CDS |
| CGACTGAGGTTAAGGTAGCA+TGG | 0.618567 | 5_1:+6380567 | None:intergenic |
| TTGCTTCAGTGTAGCGACTG+AGG | 0.620374 | 5_1:+6380553 | None:intergenic |
| GCCTGATTATAGTTCTGGCA+AGG | 0.623753 | 5_1:-6380694 | Msa0713900:intron |
| GGCAGAAACATCAAAGATAG+GGG | 0.624754 | 5_1:+6380529 | None:intergenic |
| TTTCCTATCAGTGGCGACAA+GGG | 0.625564 | 5_1:-6380299 | Msa0713900:intron |
| CTAAAATCGAAGATGAGCAA+GGG | 0.627918 | 5_1:-6384459 | Msa0713900:exon |
| CTCTGACACAGATCAAAGCT+AGG | 0.632557 | 5_1:-6380145 | Msa0713900:CDS |
| GTGCTTCACGAAACAGGGTG+TGG | 0.632752 | 5_1:+6384554 | None:intergenic |
| TAGCTTTGATCTGTGTCAGA+GGG | 0.634327 | 5_1:+6380147 | None:intergenic |
| TGAAACGGTAAGCTTCTGAT+CGG | 0.639844 | 5_1:+6384291 | None:intergenic |
| CTGTTGTGGATATTACCCGA+AGG | 0.654620 | 5_1:-6380220 | Msa0713900:CDS |
| GCACTGTGCTTCACGAAACA+GGG | 0.655155 | 5_1:+6384549 | None:intergenic |
| GATATCGGCAAGAAAGCCAA+AGG | 0.666859 | 5_1:-6384420 | Msa0713900:intron |
| AGAACACTATTACGGTTGGA+GGG | 0.671397 | 5_1:-6380184 | Msa0713900:CDS |
| AACAATCAAGGAAAGGTTGG+GGG | 0.680087 | 5_1:-6380119 | Msa0713900:CDS |
| TGGAAGTCTTGTTCTCCGAG+AGG | 0.705406 | 5_1:-6379745 | Msa0713900:three_prime_UTR |
| GAAAGGAGGACTCTCAACTG+GGG | 0.714176 | 5_1:-6380926 | Msa0713900:CDS |
| AAGGGTTGGAGAACCAACAG+TGG | 0.718653 | 5_1:+6380508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATTATAAATTGTAG+TGG | + | chr5_1:6380085-6380104 | None:intergenic | 10.0% |
| !!! | ATTTTCAAAAAAGAATTAAT+GGG | + | chr5_1:6380674-6380693 | None:intergenic | 10.0% |
| !!! | AATTTTCAAAAAAGAATTAA+TGG | + | chr5_1:6380675-6380694 | None:intergenic | 10.0% |
| !! | ATACATTAAAATAAAAAGAT+AGG | + | chr5_1:6380808-6380827 | None:intergenic | 10.0% |
| !!! | AAAGTGTTATAATAAAATAA+AGG | + | chr5_1:6381714-6381733 | None:intergenic | 10.0% |
| !! | ATGTAGAATATAATTTAAAA+AGG | - | chr5_1:6381984-6382003 | Msa0713900:intron | 10.0% |
| !! | TGTAGAATATAATTTAAAAA+GGG | - | chr5_1:6381985-6382004 | Msa0713900:intron | 10.0% |
| !!! | TATTTTAAATTCATAAATGT+TGG | - | chr5_1:6382511-6382530 | Msa0713900:intron | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | + | chr5_1:6382762-6382781 | None:intergenic | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | + | chr5_1:6382763-6382782 | None:intergenic | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | + | chr5_1:6382762-6382781 | None:intergenic | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | + | chr5_1:6382763-6382782 | None:intergenic | 10.0% |
| !!! | ACAGTTTTATTTTTTTAATA+CGG | - | chr5_1:6383108-6383127 | Msa0713900:intron | 10.0% |
| !!! | AACGAAATATTTTAATATCA+AGG | + | chr5_1:6380409-6380428 | None:intergenic | 15.0% |
| !!! | ACAATAACTCTTTTTATATA+GGG | + | chr5_1:6380513-6380532 | None:intergenic | 15.0% |
| !!! | TTTTCAAAAAAGAATTAATG+GGG | + | chr5_1:6380673-6380692 | None:intergenic | 15.0% |
| !! | AGAGAAAAAATAATAAAAGA+GGG | + | chr5_1:6381293-6381312 | None:intergenic | 15.0% |
| !!! | TTTACATTTTATTACTTACA+GGG | + | chr5_1:6381464-6381483 | None:intergenic | 15.0% |
| !!! | ATTTACATTTTATTACTTAC+AGG | + | chr5_1:6381465-6381484 | None:intergenic | 15.0% |
| !! | ATAAAATGTAAATGTAATGT+AGG | - | chr5_1:6381472-6381491 | Msa0713900:intron | 15.0% |
| !! | GTAGAATATAATTTAAAAAG+GGG | - | chr5_1:6381986-6382005 | Msa0713900:intron | 15.0% |
| !! | TAGAATATAATTTAAAAAGG+GGG | - | chr5_1:6381987-6382006 | Msa0713900:intron | 15.0% |
| !!! | AGCTTTATAAATTAATTATC+TGG | - | chr5_1:6382195-6382214 | Msa0713900:intron | 15.0% |
| !!! | TACATTTTCATAATTCATTT+TGG | - | chr5_1:6382803-6382822 | Msa0713900:intron | 15.0% |
| !!! | CAGTTTTATTTTTTTAATAC+GGG | - | chr5_1:6383109-6383128 | Msa0713900:intron | 15.0% |
| !!! | AGTTTTATTTTTTTAATACG+GGG | - | chr5_1:6383110-6383129 | Msa0713900:intron | 15.0% |
| !! | AATATGAAAATAGAACTTAA+AGG | + | chr5_1:6384614-6384633 | None:intergenic | 15.0% |
| !! | CTTATGTTCAATTAATTCTT+GGG | - | chr5_1:6380270-6380289 | Msa0713900:CDS | 20.0% |
| !! | TTATGTTCAATTAATTCTTG+GGG | - | chr5_1:6380271-6380290 | Msa0713900:CDS | 20.0% |
| !!! | TTGAAATTTTGATACATTGA+GGG | + | chr5_1:6380348-6380367 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTTGATACATTG+AGG | + | chr5_1:6380349-6380368 | None:intergenic | 20.0% |
| !!! | CACAATAACTCTTTTTATAT+AGG | + | chr5_1:6380514-6380533 | None:intergenic | 20.0% |
| !!! | TTAGAATTTTGATACATTGA+AGG | - | chr5_1:6380600-6380619 | Msa0713900:intron | 20.0% |
| !!! | TCTTTTTTGAAAATTTTGAC+CGG | - | chr5_1:6380680-6380699 | Msa0713900:intron | 20.0% |
| !! | GAGAGAAAAAATAATAAAAG+AGG | + | chr5_1:6381294-6381313 | None:intergenic | 20.0% |
| !!! | TACTTTTGTGAATTTAGTTT+TGG | - | chr5_1:6381578-6381597 | Msa0713900:intron | 20.0% |
| !! | TAAACAAAATAGCAATATCT+TGG | - | chr5_1:6381739-6381758 | Msa0713900:intron | 20.0% |
| !! | AGAATATAATTTAAAAAGGG+GGG | - | chr5_1:6381988-6382007 | Msa0713900:intron | 20.0% |
| !! | TAAGAAAAATCACAAATCAA+TGG | - | chr5_1:6382243-6382262 | Msa0713900:intron | 20.0% |
| !!! | ATGATCAATTGATTTATCTA+AGG | - | chr5_1:6382482-6382501 | Msa0713900:intron | 20.0% |
| !!! | TGATCAATTGATTTATCTAA+GGG | - | chr5_1:6382483-6382502 | Msa0713900:intron | 20.0% |
| !! | ATGCTTATTACCTAAAATTT+GGG | - | chr5_1:6382644-6382663 | Msa0713900:intron | 20.0% |
| !!! | TACTTATTGGCTAAAAAATT+AGG | - | chr5_1:6382854-6382873 | Msa0713900:intron | 20.0% |
| !!! | ACTTATTGGCTAAAAAATTA+GGG | - | chr5_1:6382855-6382874 | Msa0713900:intron | 20.0% |
| !! | ATCTAATGTTCATTTCAATA+TGG | - | chr5_1:6383326-6383345 | Msa0713900:intron | 20.0% |
| !! | AAAAATAAAGGAAAACTTCA+AGG | + | chr5_1:6384328-6384347 | None:intergenic | 20.0% |
| !!! | ATCACACGTTTTAAAAATAA+AGG | + | chr5_1:6384340-6384359 | None:intergenic | 20.0% |
| !!! | TATTCAATACTCCATTTTTT+TGG | - | chr5_1:6384375-6384394 | Msa0713900:intron | 20.0% |
| !! | ATTTAATCAAAAATGGGAAA+CGG | + | chr5_1:6384505-6384524 | None:intergenic | 20.0% |
| !! | CAGGAAATTTAATCAAAAAT+GGG | + | chr5_1:6384511-6384530 | None:intergenic | 20.0% |
| !!! | TGTTTTAGATCTTTTGACAA+AGG | - | chr5_1:6379989-6380008 | Msa0713900:exon | 25.0% |
| ! | GCTTATGTTCAATTAATTCT+TGG | - | chr5_1:6380269-6380288 | Msa0713900:CDS | 25.0% |
| ! | ACAATAAGTAAGTACGTATA+AGG | + | chr5_1:6380481-6380500 | None:intergenic | 25.0% |
| ! | AAGAGTTATTGTGAGTATTA+AGG | - | chr5_1:6380521-6380540 | Msa0713900:CDS | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+GGG | - | chr5_1:6380522-6380541 | Msa0713900:CDS | 25.0% |
| ! | GAGTATTAAGGGATTATTTA+AGG | - | chr5_1:6380533-6380552 | Msa0713900:CDS | 25.0% |
| !!! | TTACGATGTTTTTAAAGGAA+CGG | + | chr5_1:6380778-6380797 | None:intergenic | 25.0% |
| !!! | ACTGTTTACGATGTTTTTAA+AGG | + | chr5_1:6380783-6380802 | None:intergenic | 25.0% |
| ! | TTATGTACAGACTAAAATAC+TGG | + | chr5_1:6381373-6381392 | None:intergenic | 25.0% |
| !! | CTGATTCATATTTTATTACG+TGG | - | chr5_1:6381396-6381415 | Msa0713900:intron | 25.0% |
| !! | TTCTGTATAAACTTGTTTCA+CGG | - | chr5_1:6381550-6381569 | Msa0713900:intron | 25.0% |
| ! | AATACTATATGAACAATGTC+TGG | - | chr5_1:6381783-6381802 | Msa0713900:intron | 25.0% |
| ! | ATACTATATGAACAATGTCT+GGG | - | chr5_1:6381784-6381803 | Msa0713900:intron | 25.0% |
| ! | AAAAGAAACTGAATGTTTAG+AGG | - | chr5_1:6381813-6381832 | Msa0713900:intron | 25.0% |
| !!! | TTTTCATGTCTGAAATACTT+GGG | - | chr5_1:6382059-6382078 | Msa0713900:intron | 25.0% |
| ! | AAACGATTTATGAGCATAAA+TGG | + | chr5_1:6382104-6382123 | None:intergenic | 25.0% |
| !! | TACATTTCCATAATTCCTTT+TGG | - | chr5_1:6382594-6382613 | Msa0713900:intron | 25.0% |
| ! | AGAAATTCCAAAAGGAATTA+TGG | + | chr5_1:6382604-6382623 | None:intergenic | 25.0% |
| ! | CATGCTTATTACCTAAAATT+TGG | - | chr5_1:6382643-6382662 | Msa0713900:intron | 25.0% |
| ! | TGCTTATTACCTAAAATTTG+GGG | - | chr5_1:6382645-6382664 | Msa0713900:intron | 25.0% |
| ! | AAAAAGTAAGAAAGGGATAA+AGG | + | chr5_1:6382755-6382774 | None:intergenic | 25.0% |
| !! | TTGTACGTTATTGATGATTA+TGG | + | chr5_1:6383021-6383040 | None:intergenic | 25.0% |
| ! | ATAATCATCAATAACGTACA+AGG | - | chr5_1:6383020-6383039 | Msa0713900:intron | 25.0% |
| !!! | TTATTTTTTTAATACGGGGA+TGG | - | chr5_1:6383114-6383133 | Msa0713900:intron | 25.0% |
| !! | GTTCTTTTTAAATTCATGTC+TGG | - | chr5_1:6383193-6383212 | Msa0713900:intron | 25.0% |
| !!! | CTCAATTTTGACATCAATAA+GGG | + | chr5_1:6383442-6383461 | None:intergenic | 25.0% |
| !!! | TCTCAATTTTGACATCAATA+AGG | + | chr5_1:6383443-6383462 | None:intergenic | 25.0% |
| !! | GTGATTTTTCATCTTTTGTA+TGG | - | chr5_1:6383644-6383663 | Msa0713900:intron | 25.0% |
| !! | AGTTTTACTAAATACAACAC+TGG | - | chr5_1:6383866-6383885 | Msa0713900:intron | 25.0% |
| !! | GTTTTACTAAATACAACACT+GGG | - | chr5_1:6383867-6383886 | Msa0713900:intron | 25.0% |
| ! | AACAAATCAGAACACTATTA+CGG | - | chr5_1:6384120-6384139 | Msa0713900:intron | 25.0% |
| ! | GCAGGAAATTTAATCAAAAA+TGG | + | chr5_1:6384512-6384531 | None:intergenic | 25.0% |
| ! | GTAGTAGATATTCTGATATA+TGG | - | chr5_1:6384547-6384566 | Msa0713900:five_prime_UTR | 25.0% |
| ! | AAGGTAAAACACAATAGATA+AGG | + | chr5_1:6384595-6384614 | None:intergenic | 25.0% |
| TAATTGCATTATCAGATGTC+AGG | - | chr5_1:6380138-6380157 | Msa0713900:CDS | 30.0% | |
| !! | ATTAATTTGTTAGCCGTTGT+CGG | - | chr5_1:6380206-6380225 | Msa0713900:CDS | 30.0% |
| ACTAACAAAATGCACAATCA+GGG | + | chr5_1:6380377-6380396 | None:intergenic | 30.0% | |
| ACTAACAAAGTAGACAATCA+GGG | - | chr5_1:6380571-6380590 | Msa0713900:CDS | 30.0% | |
| ! | TAATGGGGTAATAGTCATTT+TGG | + | chr5_1:6380658-6380677 | None:intergenic | 30.0% |
| TATGAAGCTTAGATATAGAC+AGG | + | chr5_1:6380728-6380747 | None:intergenic | 30.0% | |
| CAACTTGGATGGATAAAATT+TGG | + | chr5_1:6381167-6381186 | None:intergenic | 30.0% | |
| ! | TGTTTTGTCTATAGACAAAG+CGG | + | chr5_1:6381233-6381252 | None:intergenic | 30.0% |
| AATAAACATCAGCCTTAAGA+AGG | + | chr5_1:6381425-6381444 | None:intergenic | 30.0% | |
| !! | TTATACAGAAGCATTGGATT+TGG | + | chr5_1:6381540-6381559 | None:intergenic | 30.0% |
| ! | ACAAGTTTATACAGAAGCAT+TGG | + | chr5_1:6381546-6381565 | None:intergenic | 30.0% |
| ATTCTGTATAAGTGCGATAA+TGG | + | chr5_1:6381687-6381706 | None:intergenic | 30.0% | |
| !! | GTTTTCATGTCTGAAATACT+TGG | - | chr5_1:6382058-6382077 | Msa0713900:intron | 30.0% |
| GGAATTATGGAAATGTACAA+TGG | + | chr5_1:6382591-6382610 | None:intergenic | 30.0% | |
| ATGTAAGGAGAAATTCCAAA+AGG | + | chr5_1:6382612-6382631 | None:intergenic | 30.0% | |
| CATAGCACATTCTTAGTATT+TGG | + | chr5_1:6383251-6383270 | None:intergenic | 30.0% | |
| CAAATACTAAGAATGTGCTA+TGG | - | chr5_1:6383249-6383268 | Msa0713900:intron | 30.0% | |
| CTTAAGTAAATCATCTCATG+TGG | - | chr5_1:6383515-6383534 | Msa0713900:intron | 30.0% | |
| GAGATTTGTAACAGAAATCT+TGG | + | chr5_1:6383951-6383970 | None:intergenic | 30.0% | |
| TTTCTGTTACAAATCTCTAG+CGG | - | chr5_1:6383954-6383973 | Msa0713900:intron | 30.0% | |
| !!! | TCAATACTCCATTTTTTTGG+TGG | - | chr5_1:6384378-6384397 | Msa0713900:intron | 30.0% |
| CAATAACTTGAATCAACCTA+TGG | - | chr5_1:6384476-6384495 | Msa0713900:intron | 30.0% | |
| AATGTGTGTTAGAGAGAGAA+AGG | + | chr5_1:6379807-6379826 | None:intergenic | 35.0% | |
| ! | TCTAAAATCGAAGATGAGCA+AGG | - | chr5_1:6379852-6379871 | Msa0713900:three_prime_UTR | 35.0% |
| CTAAAATCGAAGATGAGCAA+GGG | - | chr5_1:6379853-6379872 | Msa0713900:three_prime_UTR | 35.0% | |
| ! | GAATCGATTCAATTCACCTT+TGG | + | chr5_1:6379911-6379930 | None:intergenic | 35.0% |
| AGTAGTGCTGTAAGATGAAA+CGG | + | chr5_1:6380039-6380058 | None:intergenic | 35.0% | |
| ATTATCAGATGTCAGGTTAC+TGG | - | chr5_1:6380145-6380164 | Msa0713900:CDS | 35.0% | |
| ! | TAATCACACATCAGAGGTAT+CGG | + | chr5_1:6380242-6380261 | None:intergenic | 35.0% |
| ATTCATTCGTTCCTCATTCA+GGG | + | chr5_1:6380313-6380332 | None:intergenic | 35.0% | |
| TATTCATTCGTTCCTCATTC+AGG | + | chr5_1:6380314-6380333 | None:intergenic | 35.0% | |
| GACTAACAAAATGCACAATC+AGG | + | chr5_1:6380378-6380397 | None:intergenic | 35.0% | |
| GACTAACAAAGTAGACAATC+AGG | - | chr5_1:6380570-6380589 | Msa0713900:CDS | 35.0% | |
| GATATTCAGCCTAACAATGT+CGG | + | chr5_1:6381045-6381064 | None:intergenic | 35.0% | |
| ! | AATATCTTTTGTGCTCTCCT+TGG | - | chr5_1:6381059-6381078 | Msa0713900:intron | 35.0% |
| AAACAAACTAACACACGACA+TGG | + | chr5_1:6381101-6381120 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTATAGACGAAG+CGG | + | chr5_1:6381131-6381150 | None:intergenic | 35.0% |
| ! | TTTATCCATCCAAGTTGAGT+CGG | - | chr5_1:6381170-6381189 | Msa0713900:intron | 35.0% |
| !! | TGGTTTTCAAGACATGTTGT+TGG | - | chr5_1:6381630-6381649 | Msa0713900:intron | 35.0% |
| !! | TGTATAAGTGCGATAATGGA+TGG | + | chr5_1:6381683-6381702 | None:intergenic | 35.0% |
| ACTGAATGTTTAGAGGCAAT+TGG | - | chr5_1:6381820-6381839 | Msa0713900:intron | 35.0% | |
| CAATTGGATTGAATGTAGAC+AGG | - | chr5_1:6381836-6381855 | Msa0713900:intron | 35.0% | |
| !!! | ATGGTTTTAGGAATCAGACA+TGG | - | chr5_1:6381935-6381954 | Msa0713900:intron | 35.0% |
| TTTAAAAAGGGGGGAATTCT+TGG | - | chr5_1:6381997-6382016 | Msa0713900:intron | 35.0% | |
| ! | ATGTTGGAAGCCTTTTGTAT+AGG | - | chr5_1:6382527-6382546 | Msa0713900:intron | 35.0% |
| TATTGAGTGGCCTATACAAA+AGG | + | chr5_1:6382540-6382559 | None:intergenic | 35.0% | |
| CAATGGCAACACTAATCATT+TGG | + | chr5_1:6382574-6382593 | None:intergenic | 35.0% | |
| TACCTAAAATTTGGGGATAG+TGG | - | chr5_1:6382652-6382671 | Msa0713900:intron | 35.0% | |
| ! | ATCCACTATCCCCAAATTTT+AGG | + | chr5_1:6382657-6382676 | None:intergenic | 35.0% |
| GTTGCATACTGCATACTTAT+TGG | - | chr5_1:6382841-6382860 | Msa0713900:intron | 35.0% | |
| TTTCAACTTGGTTGTTCTGA+AGG | - | chr5_1:6382910-6382929 | Msa0713900:intron | 35.0% | |
| TAATTTCCAGACACAAAGCT+TGG | + | chr5_1:6383170-6383189 | None:intergenic | 35.0% | |
| ATTGTACTTCCTGGTTATCA+TGG | - | chr5_1:6383218-6383237 | Msa0713900:intron | 35.0% | |
| CAATATGGTTTCTTCCTTTC+AGG | - | chr5_1:6383341-6383360 | Msa0713900:intron | 35.0% | |
| !! | ACTTCAACTGCTTTGAAGAA+AGG | - | chr5_1:6383369-6383388 | Msa0713900:intron | 35.0% |
| AAAAAGGTCAGTGAATGTGA+GGG | + | chr5_1:6383566-6383585 | None:intergenic | 35.0% | |
| AATTGAAGCTATCGTCTTTG+TGG | + | chr5_1:6383593-6383612 | None:intergenic | 35.0% | |
| ! | TACACTGTCTGAAATTGTGT+GGG | - | chr5_1:6383684-6383703 | Msa0713900:intron | 35.0% |
| ! | GATTTGTCATTTGCAGTTAG+AGG | - | chr5_1:6383706-6383725 | Msa0713900:intron | 35.0% |
| TGGCAGAAACATCAAAGATA+GGG | + | chr5_1:6383787-6383806 | None:intergenic | 35.0% | |
| !! | TGGGATTAGTTTCACGAAAT+TGG | - | chr5_1:6383886-6383905 | Msa0713900:intron | 35.0% |
| AACATGTTCTTTCCTATCAG+TGG | - | chr5_1:6384004-6384023 | Msa0713900:intron | 35.0% | |
| !! | TCTTCTTGATTTGGTCTAGA+TGG | + | chr5_1:6384066-6384085 | None:intergenic | 35.0% |
| !! | TCTGATTTGTTGAGAACCTT+CGG | + | chr5_1:6384111-6384130 | None:intergenic | 35.0% |
| AATCAGAACACTATTACGGT+TGG | - | chr5_1:6384124-6384143 | Msa0713900:intron | 35.0% | |
| AAAGCTAGGTTCAACAATCA+AGG | - | chr5_1:6384181-6384200 | Msa0713900:intron | 35.0% | |
| TAGGTTCAACAATCAAGGAA+AGG | - | chr5_1:6384186-6384205 | Msa0713900:intron | 35.0% | |
| TTCAACAATCAAGGAAAGGT+TGG | - | chr5_1:6384190-6384209 | Msa0713900:intron | 35.0% | |
| TCAACAATCAAGGAAAGGTT+GGG | - | chr5_1:6384191-6384210 | Msa0713900:intron | 35.0% | |
| !! | AAATAGTCAGCACTGACTTT+GGG | + | chr5_1:6384240-6384259 | None:intergenic | 35.0% |
| !!! | AAACTTGGGTTTTTTCTCCA+GGG | + | chr5_1:6384284-6384303 | None:intergenic | 35.0% |
| TGGAGAAAAAACCCAAGTTT+GGG | - | chr5_1:6384284-6384303 | Msa0713900:CDS | 35.0% | |
| ! | GTTTCTAGGTTCTTTCTGAT+TGG | - | chr5_1:6384442-6384461 | Msa0713900:CDS | 35.0% |
| TACAATGTAAGAAGCAAAGC+AGG | + | chr5_1:6384530-6384549 | None:intergenic | 35.0% | |
| ACAATAGATAAGGATCCTCT+CGG | + | chr5_1:6384585-6384604 | None:intergenic | 35.0% | |
| !! | TTTGGCTTTCTTGCCGATAT+CGG | + | chr5_1:6379893-6379912 | None:intergenic | 40.0% |
| TGAAACGGTAAGCTTCTGAT+CGG | + | chr5_1:6380024-6380043 | None:intergenic | 40.0% | |
| GTTTCATCTTACAGCACTAC+TGG | - | chr5_1:6380038-6380057 | Msa0713900:CDS | 40.0% | |
| AGACACTAATCACACATCAG+AGG | + | chr5_1:6380248-6380267 | None:intergenic | 40.0% | |
| TCTGATGTGTGATTAGTGTC+TGG | - | chr5_1:6380247-6380266 | Msa0713900:CDS | 40.0% | |
| ! | TGACTACTTGCTACACATTC+AGG | - | chr5_1:6380630-6380649 | Msa0713900:intron | 40.0% |
| ! | GACTACTTGCTACACATTCA+GGG | - | chr5_1:6380631-6380650 | Msa0713900:intron | 40.0% |
| !! | GCGCATTTGATGATGATTGT+CGG | - | chr5_1:6380752-6380771 | Msa0713900:CDS | 40.0% |
| CTCCACACTTAAACGTGATT+TGG | - | chr5_1:6380871-6380890 | Msa0713900:CDS | 40.0% | |
| TGCCAAATCACGTTTAAGTG+TGG | + | chr5_1:6380876-6380895 | None:intergenic | 40.0% | |
| GCGATAATACCGACATTGTT+AGG | - | chr5_1:6381033-6381052 | Msa0713900:intron | 40.0% | |
| TTGTTGTCTATAGACGAAGC+GGG | + | chr5_1:6381130-6381149 | None:intergenic | 40.0% | |
| TGTCTATAGACAAAGCGGTT+TGG | + | chr5_1:6381228-6381247 | None:intergenic | 40.0% | |
| ! | GCTCGCTTTAAATGTTTCTG+AGG | + | chr5_1:6381349-6381368 | None:intergenic | 40.0% |
| ATTACGTGGTCACCTTCTTA+AGG | - | chr5_1:6381410-6381429 | Msa0713900:intron | 40.0% | |
| CTTTCTGCTAGTCATAAGAG+CGG | - | chr5_1:6381601-6381620 | Msa0713900:intron | 40.0% | |
| TAGACAGGAACTTTGACAGA+AGG | - | chr5_1:6381851-6381870 | Msa0713900:intron | 40.0% | |
| AGACAGGAACTTTGACAGAA+GGG | - | chr5_1:6381852-6381871 | Msa0713900:intron | 40.0% | |
| TCAGACATGGAAGAAACAGA+TGG | - | chr5_1:6381948-6381967 | Msa0713900:intron | 40.0% | |
| CAGAGGCTCAGAAAAATTGT+TGG | - | chr5_1:6382280-6382299 | Msa0713900:intron | 40.0% | |
| AGGCTCAGAAAAATTGTTGG+TGG | - | chr5_1:6382283-6382302 | Msa0713900:intron | 40.0% | |
| GAGATTGAGTGATTGATCAC+TGG | - | chr5_1:6382368-6382387 | Msa0713900:intron | 40.0% | |
| ! | GTGAGTTGAGAAATCTGTAG+AGG | - | chr5_1:6382395-6382414 | Msa0713900:intron | 40.0% |
| TTGAGAAATCTGTAGAGGAC+AGG | - | chr5_1:6382400-6382419 | Msa0713900:intron | 40.0% | |
| GGTGATTCAAACGTATTGAG+TGG | + | chr5_1:6382553-6382572 | None:intergenic | 40.0% | |
| ! | GCAATGAAAGCTTTTCAGCT+TGG | - | chr5_1:6382688-6382707 | Msa0713900:intron | 40.0% |
| TTTCAGCTTGGTTGTTCTGA+AGG | - | chr5_1:6382700-6382719 | Msa0713900:intron | 40.0% | |
| TATGCAGTATGCAACATGTG+AGG | + | chr5_1:6382836-6382855 | None:intergenic | 40.0% | |
| !! | TCAACTGCTTTGAAGAAAGG+AGG | - | chr5_1:6383372-6383391 | Msa0713900:intron | 40.0% |
| AATTGAGACAGCGTCAATTG+TGG | - | chr5_1:6383455-6383474 | Msa0713900:intron | 40.0% | |
| ATTGAGACAGCGTCAATTGT+GGG | - | chr5_1:6383456-6383475 | Msa0713900:intron | 40.0% | |
| ! | GGTTGTATTGATCTGGAAGA+GGG | + | chr5_1:6383545-6383564 | None:intergenic | 40.0% |
| ! | ATGTGAGGGTTGTATTGATC+TGG | + | chr5_1:6383552-6383571 | None:intergenic | 40.0% |
| GAAAAAGGTCAGTGAATGTG+AGG | + | chr5_1:6383567-6383586 | None:intergenic | 40.0% | |
| TCGTCTTTGTGGATGGAAAA+AGG | + | chr5_1:6383582-6383601 | None:intergenic | 40.0% | |
| AAGCTGCCTGATTATAGTTC+TGG | - | chr5_1:6383613-6383632 | Msa0713900:intron | 40.0% | |
| ACCTTGCCAGAACTATAATC+AGG | + | chr5_1:6383622-6383641 | None:intergenic | 40.0% | |
| ! | GTACACTGTCTGAAATTGTG+TGG | - | chr5_1:6383683-6383702 | Msa0713900:intron | 40.0% |
| GGCAGAAACATCAAAGATAG+GGG | + | chr5_1:6383786-6383805 | None:intergenic | 40.0% | |
| GTGGCAGAAACATCAAAGAT+AGG | + | chr5_1:6383788-6383807 | None:intergenic | 40.0% | |
| ! | TTTGATGTTTCTGCCACTGT+TGG | - | chr5_1:6383791-6383810 | Msa0713900:intron | 40.0% |
| GCAGGCTATGATACTAAATC+TGG | - | chr5_1:6383842-6383861 | Msa0713900:intron | 40.0% | |
| !! | TCTTGATTTGGTCTAGATGG+TGG | + | chr5_1:6384063-6384082 | None:intergenic | 40.0% |
| !! | CTGATTTGTTGAGAACCTTC+GGG | + | chr5_1:6384110-6384129 | None:intergenic | 40.0% |
| AGAACACTATTACGGTTGGA+GGG | - | chr5_1:6384128-6384147 | Msa0713900:intron | 40.0% | |
| !! | TAGCTTTGATCTGTGTCAGA+GGG | + | chr5_1:6384168-6384187 | None:intergenic | 40.0% |
| CAACAATCAAGGAAAGGTTG+GGG | - | chr5_1:6384192-6384211 | Msa0713900:intron | 40.0% | |
| AACAATCAAGGAAAGGTTGG+GGG | - | chr5_1:6384193-6384212 | Msa0713900:intron | 40.0% | |
| !! | GAAATAGTCAGCACTGACTT+TGG | + | chr5_1:6384241-6384260 | None:intergenic | 40.0% |
| !! | AAGTCAGTGCTGACTATTTC+TGG | - | chr5_1:6384241-6384260 | Msa0713900:intron | 40.0% |
| !!! | CAAACTTGGGTTTTTTCTCC+AGG | + | chr5_1:6384285-6384304 | None:intergenic | 40.0% |
| CTGGAGAAAAAACCCAAGTT+TGG | - | chr5_1:6384283-6384302 | Msa0713900:CDS | 40.0% | |
| GAAAAAACCCAAGTTTGGGT+TGG | - | chr5_1:6384288-6384307 | Msa0713900:CDS | 40.0% | |
| ACTTCAAGGTTTGAGAGCAA+TGG | + | chr5_1:6384314-6384333 | None:intergenic | 40.0% | |
| TTCAAGGGCCACCAAAAAAA+TGG | + | chr5_1:6384389-6384408 | None:intergenic | 40.0% | |
| !!! | ATTTTTTTGGTGGCCCTTGA+AGG | - | chr5_1:6384388-6384407 | Msa0713900:intron | 40.0% |
| !!! | TTTTTTTGGTGGCCCTTGAA+GGG | - | chr5_1:6384389-6384408 | Msa0713900:intron | 40.0% |
| TTATTCTACCCTCCCTTCAA+GGG | + | chr5_1:6384404-6384423 | None:intergenic | 40.0% | |
| ATTATTCTACCCTCCCTTCA+AGG | + | chr5_1:6384405-6384424 | None:intergenic | 40.0% | |
| GATATCGGCAAGAAAGCCAA+AGG | - | chr5_1:6379892-6379911 | Msa0713900:three_prime_UTR | 45.0% | |
| ! | GTCACTTTAGTCCCTGAATG+AGG | - | chr5_1:6380299-6380318 | Msa0713900:intron | 45.0% |
| GACAGGACACAACATAGACA+GGG | + | chr5_1:6380711-6380730 | None:intergenic | 45.0% | |
| AGACAGGACACAACATAGAC+AGG | + | chr5_1:6380712-6380731 | None:intergenic | 45.0% | |
| GATTTGGCAAGAGTAGTACC+TGG | - | chr5_1:6380887-6380906 | Msa0713900:CDS | 45.0% | |
| CTATTCCCACTAAGTGGGAT+GGG | + | chr5_1:6380955-6380974 | None:intergenic | 45.0% | |
| CAAGCCTATTCCCACTAAGT+GGG | + | chr5_1:6380960-6380979 | None:intergenic | 45.0% | |
| TCGGTATTATCGCTTGTGCT+AGG | + | chr5_1:6381026-6381045 | None:intergenic | 45.0% | |
| ! | TTCATGTAGCCGACTCAACT+TGG | + | chr5_1:6381182-6381201 | None:intergenic | 45.0% |
| !! | CGGTTTGGTTCAACACAATG+GGG | + | chr5_1:6381213-6381232 | None:intergenic | 45.0% |
| !! | GCGGTTTGGTTCAACACAAT+GGG | + | chr5_1:6381214-6381233 | None:intergenic | 45.0% |
| !! | AGCGGTTTGGTTCAACACAA+TGG | + | chr5_1:6381215-6381234 | None:intergenic | 45.0% |
| AGTCATAAGAGCGGAGCATA+TGG | - | chr5_1:6381610-6381629 | Msa0713900:intron | 45.0% | |
| !! | GCGATAATGGATGGTTCGTA+GGG | + | chr5_1:6381674-6381693 | None:intergenic | 45.0% |
| !! | TGCGATAATGGATGGTTCGT+AGG | + | chr5_1:6381675-6381694 | None:intergenic | 45.0% |
| ! | CTTGGACAAGAGTTGAGTTG+AGG | - | chr5_1:6381757-6381776 | Msa0713900:intron | 45.0% |
| AAAACCATCCAAGCCTCCAA+GGG | + | chr5_1:6381923-6381942 | None:intergenic | 45.0% | |
| TAAAACCATCCAAGCCTCCA+AGG | + | chr5_1:6381924-6381943 | None:intergenic | 45.0% | |
| ! | TTGGAGGCTTGGATGGTTTT+AGG | - | chr5_1:6381923-6381942 | Msa0713900:intron | 45.0% |
| GCTGTTGAAAGTTATCACGC+AGG | - | chr5_1:6382028-6382047 | Msa0713900:intron | 45.0% | |
| TGGCCAATAATAGACAGCAG+AGG | - | chr5_1:6382263-6382282 | Msa0713900:intron | 45.0% | |
| GAGCCTCTGCTGTCTATTAT+TGG | + | chr5_1:6382269-6382288 | None:intergenic | 45.0% | |
| CATGCAGTACGCATCATGTA+AGG | + | chr5_1:6382627-6382646 | None:intergenic | 45.0% | |
| ATGCATGTTGACAGCAACGT+AGG | - | chr5_1:6382885-6382904 | Msa0713900:intron | 45.0% | |
| ! | GCAACGTAGGCTTTTCAACT+TGG | - | chr5_1:6382898-6382917 | Msa0713900:intron | 45.0% |
| TTCTTAATGCCGTACTGCAG+CGG | - | chr5_1:6383059-6383078 | Msa0713900:intron | 45.0% | |
| ! | TTTCCTCCAAGCTTTGTGTC+TGG | - | chr5_1:6383161-6383180 | Msa0713900:intron | 45.0% |
| TTTCCAGACACAAAGCTTGG+AGG | + | chr5_1:6383167-6383186 | None:intergenic | 45.0% | |
| TGTCTGGCTATTGTACTTCC+TGG | - | chr5_1:6383209-6383228 | Msa0713900:intron | 45.0% | |
| GTACTTCCTGGTTATCATGG+TGG | - | chr5_1:6383221-6383240 | Msa0713900:intron | 45.0% | |
| AAGAATGTGCTATGGTTCCC+AGG | - | chr5_1:6383257-6383276 | Msa0713900:intron | 45.0% | |
| AGAATGTGCTATGGTTCCCA+GGG | - | chr5_1:6383258-6383277 | Msa0713900:intron | 45.0% | |
| AGTTGAAGTGAGTGCCTGAA+AGG | + | chr5_1:6383358-6383377 | None:intergenic | 45.0% | |
| AAGAAAGGAGGACTCTCAAC+TGG | - | chr5_1:6383384-6383403 | Msa0713900:intron | 45.0% | |
| AGAAAGGAGGACTCTCAACT+GGG | - | chr5_1:6383385-6383404 | Msa0713900:intron | 45.0% | |
| ! | GGGTTGTATTGATCTGGAAG+AGG | + | chr5_1:6383546-6383565 | None:intergenic | 45.0% |
| GAAGCTATCGTCTTTGTGGA+TGG | + | chr5_1:6383589-6383608 | None:intergenic | 45.0% | |
| !! | GCCTGATTATAGTTCTGGCA+AGG | - | chr5_1:6383618-6383637 | Msa0713900:intron | 45.0% |
| TTTCCTATCAGTGGCGACAA+GGG | - | chr5_1:6384013-6384032 | Msa0713900:intron | 45.0% | |
| !! | TGATTTGGTCTAGATGGTGG+AGG | + | chr5_1:6384060-6384079 | None:intergenic | 45.0% |
| CAGCAGCACTCTTCTTGATT+TGG | + | chr5_1:6384075-6384094 | None:intergenic | 45.0% | |
| CTGTTGTGGATATTACCCGA+AGG | - | chr5_1:6384092-6384111 | Msa0713900:intron | 45.0% | |
| CAGAACACTATTACGGTTGG+AGG | - | chr5_1:6384127-6384146 | Msa0713900:intron | 45.0% | |
| !! | CTAGCTTTGATCTGTGTCAG+AGG | + | chr5_1:6384169-6384188 | None:intergenic | 45.0% |
| CTCTGACACAGATCAAAGCT+AGG | - | chr5_1:6384167-6384186 | Msa0713900:intron | 45.0% | |
| !! | AGTGCTGACTATTTCTGGTG+AGG | - | chr5_1:6384246-6384265 | Msa0713900:intron | 45.0% |
| !! | TTCTGGTGAGGTTGATACCA+AGG | - | chr5_1:6384258-6384277 | Msa0713900:intron | 45.0% |
| TTCCACAGATGAGCGTTTCT+AGG | - | chr5_1:6384428-6384447 | Msa0713900:CDS | 45.0% | |
| AACCTAGAAACGCTCATCTG+TGG | + | chr5_1:6384433-6384452 | None:intergenic | 45.0% | |
| AAATGGGAAACGGAAGCCAT+AGG | + | chr5_1:6384495-6384514 | None:intergenic | 45.0% | |
| GCACTGTGCTTCACGAAACA+GGG | + | chr5_1:6379766-6379785 | None:intergenic | 50.0% | |
| TGCACTGTGCTTCACGAAAC+AGG | + | chr5_1:6379767-6379786 | None:intergenic | 50.0% | |
| ATCGAAGATGAGCAAGGGAC+CGG | - | chr5_1:6379858-6379877 | Msa0713900:three_prime_UTR | 50.0% | |
| ACCTGGATGTGTGACATCCT+AGG | - | chr5_1:6380904-6380923 | Msa0713900:CDS | 50.0% | |
| TCCTAGGATGTCACACATCC+AGG | + | chr5_1:6380908-6380927 | None:intergenic | 50.0% | |
| GTGCAACACAAGGACTTCCT+AGG | + | chr5_1:6380924-6380943 | None:intergenic | 50.0% | |
| CCTATTCCCACTAAGTGGGA+TGG | + | chr5_1:6380956-6380975 | None:intergenic | 50.0% | |
| CCATCCCACTTAGTGGGAAT+AGG | - | chr5_1:6380953-6380972 | Msa0713900:intron | 50.0% | |
| CCAAGCCTATTCCCACTAAG+TGG | + | chr5_1:6380961-6380980 | None:intergenic | 50.0% | |
| CCACTTAGTGGGAATAGGCT+TGG | - | chr5_1:6380958-6380977 | Msa0713900:intron | 50.0% | |
| CTTAGTGGGAATAGGCTTGG+TGG | - | chr5_1:6380961-6380980 | Msa0713900:intron | 50.0% | |
| ! | GAAGATCCTGGTTCGAACCA+AGG | + | chr5_1:6381079-6381098 | None:intergenic | 50.0% |
| ACACACGACATGGAAGATCC+TGG | + | chr5_1:6381091-6381110 | None:intergenic | 50.0% | |
| ! | TGTAGCCGACTCAACTTGGA+TGG | + | chr5_1:6381178-6381197 | None:intergenic | 50.0% |
| TCAAAAAACAGCGCCACCCT+TGG | - | chr5_1:6381904-6381923 | Msa0713900:intron | 50.0% | |
| ATGCCAATGCGAGACTGACA+AGG | - | chr5_1:6382452-6382471 | Msa0713900:intron | 50.0% | |
| TCTTAATGCCGTACTGCAGC+GGG | - | chr5_1:6383060-6383079 | Msa0713900:intron | 50.0% | |
| AACATGAACCCGCTGCAGTA+CGG | + | chr5_1:6383071-6383090 | None:intergenic | 50.0% | |
| GGAAAGCCACCATGATAACC+AGG | + | chr5_1:6383230-6383249 | None:intergenic | 50.0% | |
| GAAAGGAGGACTCTCAACTG+GGG | - | chr5_1:6383386-6383405 | Msa0713900:intron | 50.0% | |
| AGGTTAAGGTAGCATGGTCG+TGG | + | chr5_1:6383742-6383761 | None:intergenic | 50.0% | |
| CGACTGAGGTTAAGGTAGCA+TGG | + | chr5_1:6383748-6383767 | None:intergenic | 50.0% | |
| CAGTGTAGCGACTGAGGTTA+AGG | + | chr5_1:6383756-6383775 | None:intergenic | 50.0% | |
| TTGCTTCAGTGTAGCGACTG+AGG | + | chr5_1:6383762-6383781 | None:intergenic | 50.0% | |
| AAGGGTTGGAGAACCAACAG+TGG | + | chr5_1:6383807-6383826 | None:intergenic | 50.0% | |
| GGTTCTCCAACCCTTGCATT+TGG | - | chr5_1:6383812-6383831 | Msa0713900:intron | 50.0% | |
| TCAGCACCAAATGCAAGGGT+TGG | + | chr5_1:6383821-6383840 | None:intergenic | 50.0% | |
| !! | AACCCTTGCATTTGGTGCTG+AGG | - | chr5_1:6383820-6383839 | Msa0713900:intron | 50.0% |
| TGCCTCAGCACCAAATGCAA+GGG | + | chr5_1:6383825-6383844 | None:intergenic | 50.0% | |
| CTTTCCTATCAGTGGCGACA+AGG | - | chr5_1:6384012-6384031 | Msa0713900:intron | 50.0% | |
| !! | CAAGAAGAGTGCTGCTGTTG+TGG | - | chr5_1:6384078-6384097 | Msa0713900:intron | 50.0% |
| GCAATGGCCAACCCAAACTT+GGG | + | chr5_1:6384298-6384317 | None:intergenic | 50.0% | |
| AGCAATGGCCAACCCAAACT+TGG | + | chr5_1:6384299-6384318 | None:intergenic | 50.0% | |
| !! | TGGAAGTCTTGTTCTCCGAG+AGG | - | chr5_1:6384567-6384586 | Msa0713900:five_prime_UTR | 50.0% |
| GTGCTTCACGAAACAGGGTG+TGG | + | chr5_1:6379761-6379780 | None:intergenic | 55.0% | |
| TCGAAGATGAGCAAGGGACC+GGG | - | chr5_1:6379859-6379878 | Msa0713900:three_prime_UTR | 55.0% | |
| CCGATATCGGAGTAGAGACC+CGG | + | chr5_1:6379880-6379899 | None:intergenic | 55.0% | |
| CCGGGTCTCTACTCCGATAT+CGG | - | chr5_1:6379877-6379896 | Msa0713900:three_prime_UTR | 55.0% | |
| !! | CGGTGCTACATAGCCGACAA+CGG | + | chr5_1:6380222-6380241 | None:intergenic | 55.0% |
| CAACATAGACAGGGCGACAC+CGG | + | chr5_1:6380702-6380721 | None:intergenic | 55.0% | |
| TTCCCACTAAGTGGGATGGG+CGG | + | chr5_1:6380952-6380971 | None:intergenic | 55.0% | |
| ! | TGCTCTCCTTGGTTCGAACC+AGG | - | chr5_1:6381070-6381089 | Msa0713900:intron | 55.0% |
| AAAAACAGCGCCACCCTTGG+AGG | - | chr5_1:6381907-6381926 | Msa0713900:intron | 55.0% | |
| GCACCTTGTCAGTCTCGCAT+TGG | + | chr5_1:6382458-6382477 | None:intergenic | 55.0% | |
| ! | CTGCAGCGGGTTCATGTTGA+AGG | - | chr5_1:6383073-6383092 | Msa0713900:intron | 55.0% |
| ! | CAGCGGGTTCATGTTGAAGG+TGG | - | chr5_1:6383076-6383095 | Msa0713900:intron | 55.0% |
| AGGACTCTCAACTGGGGATG+TGG | - | chr5_1:6383392-6383411 | Msa0713900:intron | 55.0% | |
| CTGCCTCAGCACCAAATGCA+AGG | + | chr5_1:6383826-6383845 | None:intergenic | 55.0% | |
| !! | CTTGCATTTGGTGCTGAGGC+AGG | - | chr5_1:6383824-6383843 | Msa0713900:intron | 55.0% |
| TCACCCTTGTCGCCACTGAT+AGG | + | chr5_1:6384019-6384038 | None:intergenic | 55.0% | |
| !! | TGAGGTTGATACCAAGGCCC+TGG | - | chr5_1:6384264-6384283 | Msa0713900:intron | 55.0% |
| !!! | GGGTTTTTTCTCCAGGGCCT+TGG | + | chr5_1:6384278-6384297 | None:intergenic | 55.0% |
| !! | TTTTGGTGGCCCTTGAAGGG+AGG | - | chr5_1:6384392-6384411 | Msa0713900:intron | 55.0% |
| ! | TTTGGTGGCCCTTGAAGGGA+GGG | - | chr5_1:6384393-6384412 | Msa0713900:intron | 55.0% |
| TCCCGCCCATCCCACTTAGT+GGG | - | chr5_1:6380947-6380966 | Msa0713900:CDS | 60.0% | |
| TCCCACTAAGTGGGATGGGC+GGG | + | chr5_1:6380951-6380970 | None:intergenic | 60.0% | |
| ACCATCCAAGCCTCCAAGGG+TGG | + | chr5_1:6381920-6381939 | None:intergenic | 60.0% | |
| CTCAGCTGAGTCGTGACCCT+GGG | + | chr5_1:6383277-6383296 | None:intergenic | 60.0% | |
| TCTCAGCTGAGTCGTGACCC+TGG | + | chr5_1:6383278-6383297 | None:intergenic | 60.0% | |
| CTCTCAACTGGGGATGTGGC+AGG | - | chr5_1:6383396-6383415 | Msa0713900:intron | 60.0% | |
| ! | GGCGGGAGAGGTGCAACACA+AGG | + | chr5_1:6380934-6380953 | None:intergenic | 65.0% |
| CTAAGTGGGATGGGCGGGAG+AGG | + | chr5_1:6380946-6380965 | None:intergenic | 65.0% | |
| CTCCCGCCCATCCCACTTAG+TGG | - | chr5_1:6380946-6380965 | Msa0713900:CDS | 65.0% | |
| GCCACCCTTGGAGGCTTGGA+TGG | - | chr5_1:6381916-6381935 | Msa0713900:intron | 65.0% | |
| CAGCGCCACCCTTGGAGGCT+TGG | - | chr5_1:6381912-6381931 | Msa0713900:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 6379698 | 6384636 | 6379698 | ID=Msa0713900;Name=Msa0713900 |
| chr5_1 | mRNA | 6379698 | 6384636 | 6379698 | ID=Msa0713900-mRNA-1;Parent=Msa0713900;Name=Msa0713900-mRNA-1;_AED=0.30;_eAED=0.30;_QI=147|1|1|1|0.83|0.71|7|306|276 |
| chr5_1 | exon | 6379698 | 6380310 | 6379698 | ID=Msa0713900-mRNA-1:exon:2694;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6380404 | 6380612 | 6380404 | ID=Msa0713900-mRNA-1:exon:2693;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6380695 | 6380781 | 6380695 | ID=Msa0713900-mRNA-1:exon:2692;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6380861 | 6380971 | 6380861 | ID=Msa0713900-mRNA-1:exon:2691;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6384270 | 6384337 | 6384270 | ID=Msa0713900-mRNA-1:exon:2690;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6384421 | 6384479 | 6384421 | ID=Msa0713900-mRNA-1:exon:2689;Parent=Msa0713900-mRNA-1 |
| chr5_1 | exon | 6384500 | 6384636 | 6384500 | ID=Msa0713900-mRNA-1:exon:2688;Parent=Msa0713900-mRNA-1 |
| chr5_1 | five_prime_UTR | 6384500 | 6384636 | 6384500 | ID=Msa0713900-mRNA-1:five_prime_utr;Parent=Msa0713900-mRNA-1 |
| chr5_1 | five_prime_UTR | 6384470 | 6384479 | 6384470 | ID=Msa0713900-mRNA-1:five_prime_utr;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6384421 | 6384469 | 6384421 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6384270 | 6384337 | 6384270 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6380861 | 6380971 | 6380861 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6380695 | 6380781 | 6380695 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6380404 | 6380612 | 6380404 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | CDS | 6380004 | 6380310 | 6380004 | ID=Msa0713900-mRNA-1:cds;Parent=Msa0713900-mRNA-1 |
| chr5_1 | three_prime_UTR | 6379698 | 6380003 | 6379698 | ID=Msa0713900-mRNA-1:three_prime_utr;Parent=Msa0713900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
