AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019000 MtrunA17_Chr2g0284681 94.234 607 31 3 1 607 1 603 0.0 1169
Msa1019000 MtrunA17_Chr4g0073741 68.293 615 171 6 1 601 1 605 0.0 857
Msa1019000 MtrunA17_Chr4g0031301 67.270 608 175 6 8 601 9 606 0.0 821
Msa1019000 MtrunA17_Chr4g0031321 66.941 608 177 6 8 601 9 606 0.0 816
Msa1019000 MtrunA17_Chr7g0223181 66.502 609 180 6 8 602 9 607 0.0 813
Msa1019000 MtrunA17_Chr7g0262821 66.447 608 180 6 8 601 9 606 0.0 813
Msa1019000 MtrunA17_Chr7g0223291 66.447 608 180 6 8 601 9 606 0.0 808
Msa1019000 MtrunA17_Chr6g0462681 54.785 606 241 7 8 595 9 599 0.0 661
Msa1019000 MtrunA17_Chr7g0223741 59.612 567 215 6 5 569 6 560 0.0 660
Msa1019000 MtrunA17_Chr8g0388671 56.073 601 234 8 2 586 32 618 0.0 657
Msa1019000 MtrunA17_Chr7g0223751 57.979 564 222 8 8 569 9 559 0.0 652
Msa1019000 MtrunA17_Chr6g0462601 55.648 602 242 5 8 595 9 599 0.0 652
Msa1019000 MtrunA17_Chr8g0388761 55.333 600 238 8 3 586 33 618 0.0 652
Msa1019000 MtrunA17_Chr7g0223711 57.801 564 224 6 5 566 6 557 0.0 650
Msa1019000 MtrunA17_Chr2g0298851 55.556 621 247 11 4 607 5 613 0.0 648
Msa1019000 MtrunA17_Chr5g0427901 54.067 627 249 11 8 607 9 623 0.0 643
Msa1019000 MtrunA17_Chr7g0221661 55.483 611 244 9 8 602 9 607 0.0 641
Msa1019000 MtrunA17_Chr8g0350731 58.156 564 221 7 8 569 37 587 0.0 637
Msa1019000 MtrunA17_Chr7g0233311 58.230 565 223 7 8 570 9 562 0.0 636
Msa1019000 MtrunA17_Chr7g0223731 57.143 567 228 7 5 569 6 559 0.0 634
Msa1019000 MtrunA17_Chr2g0293581 53.409 616 259 9 7 605 9 613 0.0 634
Msa1019000 MtrunA17_Chr7g0223781 57.394 568 226 8 8 573 9 562 0.0 631
Msa1019000 MtrunA17_Chr7g0223801 52.864 611 258 9 8 602 9 605 0.0 626
Msa1019000 MtrunA17_Chr7g0223721 53.647 617 257 10 8 607 9 613 0.0 626
Msa1019000 MtrunA17_Chr6g0462771 52.562 605 265 5 5 594 6 603 0.0 624
Msa1019000 MtrunA17_Chr6g0462711 53.300 606 260 6 5 594 7 605 0.0 623
Msa1019000 MtrunA17_Chr7g0223701 54.309 615 253 9 8 602 9 615 0.0 623
Msa1019000 MtrunA17_Chr7g0223031 55.263 570 234 7 5 569 6 559 0.0 621
Msa1019000 MtrunA17_Chr7g0248131 57.292 576 221 11 8 578 9 564 0.0 619
Msa1019000 MtrunA17_Chr7g0225671 54.080 625 255 12 1 607 9 619 0.0 618
Msa1019000 MtrunA17_Chr7g0223621 55.496 564 236 7 8 569 9 559 0.0 617
Msa1019000 MtrunA17_Chr6g0462641 52.787 610 265 6 1 594 1 603 0.0 615
Msa1019000 MtrunA17_Chr2g0287631 53.160 617 261 9 8 607 9 614 0.0 613
Msa1019000 MtrunA17_Chr7g0223851 53.301 621 259 10 5 607 15 622 0.0 612
Msa1019000 MtrunA17_Chr7g0248151 58.007 562 216 8 8 564 9 555 0.0 612
Msa1019000 MtrunA17_Chr4g0040931 52.674 617 263 10 8 607 9 613 0.0 611
Msa1019000 MtrunA17_Chr2g0298861 52.389 628 258 12 9 607 10 625 0.0 607
Msa1019000 MtrunA17_Chr7g0223631 54.787 564 226 9 8 569 9 545 0.0 596
Msa1019000 MtrunA17_Chr7g0233301 55.732 567 207 8 8 572 9 533 0.0 593
Msa1019000 MtrunA17_Chr7g0217971 51.741 603 238 9 8 594 9 574 0.0 585
Msa1019000 MtrunA17_Chr2g0296391 55.805 534 223 6 4 535 5 527 0.0 581
Msa1019000 MtrunA17_Chr7g0223821 51.520 625 267 10 5 607 6 616 0.0 578
Msa1019000 MtrunA17_Chr4g0012541 50.322 622 269 12 4 607 5 604 0.0 560
Msa1019000 MtrunA17_Chr8g0390821 48.187 662 249 14 8 602 11 645 0.0 555
Msa1019000 MtrunA17_Chr7g0223831 53.076 569 223 10 5 570 6 533 0.0 554
Msa1019000 MtrunA17_Chr7g0215261 52.734 567 218 9 7 570 8 527 0.0 549
Msa1019000 MtrunA17_Chr6g0462611 53.061 539 226 7 71 595 22 547 0.0 549
Msa1019000 MtrunA17_Chr7g0223541 55.311 499 211 5 71 569 31 517 0.0 537
Msa1019000 MtrunA17_Chr2g0331381 51.193 545 190 8 9 551 7 477 0.0 536
Msa1019000 MtrunA17_Chr7g0228281 47.896 618 248 8 7 607 69 629 0.0 530
Msa1019000 MtrunA17_Chr7g0223681 54.772 482 205 6 88 569 2 470 2.81e-177 513
Msa1019000 MtrunA17_Chr2g0293601 52.783 521 199 7 8 526 9 484 1.33e-175 506
Msa1019000 MtrunA17_Chr2g0299921 66.237 388 122 4 8 395 1029 1407 3.64e-168 523
Msa1019000 MtrunA17_Chr2g0299921 65.375 387 124 6 8 393 1413 1790 1.53e-154 486
Msa1019000 MtrunA17_Chr2g0299821 62.000 400 142 5 8 405 9 400 7.77e-167 484
Msa1019000 MtrunA17_Chr2g0299821 52.041 98 37 2 458 548 390 484 1.91e-19 91.7
Msa1019000 MtrunA17_Chr2g0279901 46.555 595 274 16 9 588 57 622 1.31e-163 483
Msa1019000 MtrunA17_Chr2g0299851 64.249 386 129 5 8 393 1038 1414 1.61e-163 503
Msa1019000 MtrunA17_Chr2g0293561 62.198 373 132 4 8 378 9 374 8.03e-163 471
Msa1019000 MtrunA17_Chr4g0049501 44.959 605 294 14 6 596 51 630 5.19e-159 471
Msa1019000 MtrunA17_Chr2g0299791 63.731 386 131 5 8 393 1042 1418 2.48e-157 487
Msa1019000 MtrunA17_Chr6g0462861 43.291 626 290 16 8 607 9 595 8.95e-152 452
Msa1019000 MtrunA17_Chr2g0299881 59.901 404 149 6 9 408 1039 1433 6.06e-150 469
Msa1019000 MtrunA17_Chr2g0299881 60.606 66 22 1 183 248 1414 1475 4.88e-15 79.0
Msa1019000 MtrunA17_Chr2g0277021 45.283 583 286 14 7 580 70 628 3.71e-147 442
Msa1019000 MtrunA17_Chr1g0166551 42.088 613 213 11 8 602 5 493 1.18e-143 426
Msa1019000 MtrunA17_Chr2g0293271 48.198 444 150 6 20 461 43 408 5.07e-132 392
Msa1019000 MtrunA17_Chr1g0151991 62.021 287 104 3 7 291 8 291 1.46e-124 369
Msa1019000 MtrunA17_Chr7g0245521 66.045 268 86 3 8 273 9 273 6.26e-120 356
Msa1019000 MtrunA17_Chr6g0462631 48.968 339 123 5 83 421 9 297 9.05e-97 298
Msa1019000 MtrunA17_Chr6g0462751 44.538 357 132 6 64 418 12 304 5.69e-92 286
Msa1019000 MtrunA17_Chr7g0223671 60.733 191 74 1 71 261 8 197 1.84e-78 247
Msa1019000 MtrunA17_Chr5g0394391 32.220 509 316 12 8 503 29 521 6.51e-77 255
Msa1019000 MtrunA17_Chr7g0223761 38.281 384 170 5 239 607 3 334 6.86e-77 248
Msa1019000 MtrunA17_Chr1g0188601 62.500 192 69 2 91 282 3 191 7.43e-77 242
Msa1019000 MtrunA17_Chr4g0004331 33.933 445 271 6 9 440 4 438 1.85e-75 257
Msa1019000 MtrunA17_Chr7g0245531 44.872 312 149 6 305 602 2 304 5.40e-74 239
Msa1019000 MtrunA17_Chr2g0331901 31.590 478 301 8 9 472 4 469 7.50e-74 253
Msa1019000 MtrunA17_Chr3g0098761 29.389 507 335 9 9 507 4 495 1.01e-68 237
Msa1019000 MtrunA17_Chr5g0444001 31.567 434 281 6 9 436 4 427 2.86e-68 231
Msa1019000 MtrunA17_Chr1g0152001 42.345 307 151 7 316 607 2 297 6.92e-67 221
Msa1019000 MtrunA17_Chr7g0223771 66.234 154 51 1 91 244 2 154 2.49e-66 214
Msa1019000 MtrunA17_Chr6g0462791 59.218 179 69 3 105 283 1 175 3.18e-66 214
Msa1019000 MtrunA17_Chr7g0223861 67.424 132 42 1 75 206 4 134 5.98e-56 185
Msa1019000 MtrunA17_Chr1g0188611 47.600 250 118 5 322 569 1 239 2.75e-55 189
Msa1019000 MtrunA17_Chr4g0060241 29.354 511 324 13 8 505 20 506 3.56e-55 196
Msa1019000 MtrunA17_Chr4g0064621 31.157 536 338 13 8 525 140 662 3.96e-55 198
Msa1019000 MtrunA17_Chr3g0120101 27.828 557 344 16 6 520 24 564 1.68e-53 196
Msa1019000 MtrunA17_Chr4g0046881 62.162 148 50 3 128 275 10 151 5.55e-52 175
Msa1019000 MtrunA17_Chr6g0462701 51.479 169 55 3 102 270 27 168 3.84e-45 157
Msa1019000 MtrunA17_Chr5g0394231 40.870 230 82 5 71 299 5 181 9.82e-45 157
Msa1019000 MtrunA17_Chr5g0394221 36.727 275 154 8 299 568 69 328 1.86e-44 162
Msa1019000 MtrunA17_Chr6g0462691 53.425 146 64 2 322 467 1 142 3.60e-44 154
Msa1019000 MtrunA17_Chr5g0442171 32.174 345 192 12 168 496 1 319 4.42e-41 151
Msa1019000 MtrunA17_Chr2g0284661 67.708 96 31 0 359 454 48 143 3.38e-36 132
Msa1019000 MtrunA17_Chr2g0284661 85.455 55 8 0 223 277 5 59 1.25e-24 100
Msa1019000 MtrunA17_Chr6g0481391 54.472 123 52 2 35 157 13 131 3.81e-36 132
Msa1019000 MtrunA17_Chr4g0046871 54.128 109 45 2 332 440 2 105 9.14e-31 115
Msa1019000 MtrunA17_Chr7g0245541 36.410 195 106 3 422 602 1 191 1.17e-28 113
Msa1019000 MtrunA17_Chr6g0462621 67.606 71 22 1 1 70 1 71 3.37e-27 104
Msa1019000 MtrunA17_Chr7g0223691 70.769 65 17 1 8 70 9 73 1.54e-24 97.4
Msa1019000 MtrunA17_Chr6g0481381 62.162 74 28 0 174 247 1 74 2.48e-24 100
Msa1019000 MtrunA17_Chr1g0188591 61.765 68 24 1 5 70 6 73 3.80e-23 94.0
Msa1019000 MtrunA17_Chr7g0223791 51.220 82 32 2 53 134 18 91 2.15e-18 83.6
Msa1019000 MtrunA17_Chr7g0223791 37.975 79 49 0 491 569 90 168 3.71e-12 65.5
Msa1019000 MtrunA17_Chr7g0223881 49.351 77 38 1 288 364 9 84 3.24e-18 79.7
Msa1019000 MtrunA17_Chr6g0462801 56.061 66 28 1 322 386 1 66 9.37e-17 75.1
Msa1019000 MtrunA17_Chr5g0442161 32.026 153 96 4 8 155 28 177 1.60e-15 75.1
Msa1019000 MtrunA17_Chr4g0064651 37.895 95 56 1 402 496 29 120 2.15e-15 72.8
Msa1019000 MtrunA17_Chr2g0299891 65.909 44 15 0 316 359 2 45 4.35e-14 67.8
Msa1019000 MtrunA17_Chr2g0299941 60.000 55 22 0 404 458 23 77 1.27e-13 67.0
Msa1019000 MtrunA17_Chr7g0221651 40.698 86 49 1 213 298 1 84 2.84e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019000 AT1G16030.1 66.829 615 180 6 1 601 1 605 0.0 831
Msa1019000 AT3G12580.1 66.995 609 177 6 8 602 9 607 0.0 815
Msa1019000 AT5G02500.1 66.338 609 181 6 8 602 9 607 0.0 811
Msa1019000 AT5G02490.1 65.681 609 185 6 8 602 9 607 0.0 801
Msa1019000 AT3G09440.1 66.010 609 183 6 8 602 9 607 0.0 800
Msa1019000 AT3G09440.4 66.010 609 183 6 8 602 9 607 0.0 800
Msa1019000 AT3G09440.2 66.010 609 183 6 8 602 9 607 0.0 800
Msa1019000 AT3G09440.3 66.010 609 183 6 8 602 9 607 0.0 800
Msa1019000 AT1G56410.1 65.239 607 189 7 8 602 9 605 0.0 787
Msa1019000 AT5G42020.1 56.169 616 240 8 2 601 31 632 0.0 676
Msa1019000 AT5G42020.3 56.169 616 240 8 2 601 36 637 0.0 675
Msa1019000 AT5G28540.1 56.006 616 241 8 2 601 31 632 0.0 673
Msa1019000 AT1G09080.1 56.579 608 235 7 9 601 53 646 0.0 657
Msa1019000 AT1G09080.2 56.579 608 235 7 9 601 43 636 0.0 657
Msa1019000 AT5G42020.2 52.326 602 230 11 2 601 31 577 0.0 588
Msa1019000 AT5G02500.2 70.483 393 109 4 8 400 9 394 0.0 568
Msa1019000 AT5G02500.2 48.913 92 33 1 525 602 386 477 2.31e-16 82.8
Msa1019000 AT5G09590.1 46.180 589 275 15 9 582 60 621 2.56e-159 473
Msa1019000 AT4G37910.1 46.853 572 267 13 9 568 55 601 4.79e-151 451
Msa1019000 AT4G37910.2 46.853 572 267 13 9 568 55 601 4.79e-151 451
Msa1019000 AT4G24280.1 43.322 614 305 17 7 607 79 662 3.87e-146 440
Msa1019000 AT5G49910.1 42.904 613 309 14 7 607 79 662 3.95e-146 440
Msa1019000 AT1G79930.2 34.607 445 268 6 9 440 4 438 1.56e-79 267
Msa1019000 AT1G79920.1 34.607 445 268 6 9 440 4 438 3.03e-79 265
Msa1019000 AT1G79930.1 34.607 445 268 6 9 440 4 438 3.32e-79 267
Msa1019000 AT1G79920.3 34.607 445 268 6 9 440 4 438 4.78e-79 265
Msa1019000 AT1G79920.2 34.607 445 268 6 9 440 4 438 4.78e-79 265
Msa1019000 AT1G79920.4 34.607 445 268 6 9 440 4 438 4.78e-79 265
Msa1019000 AT1G11660.4 28.571 651 395 15 9 607 4 636 3.31e-78 263
Msa1019000 AT1G11660.3 28.571 651 395 15 9 607 4 636 3.31e-78 263
Msa1019000 AT1G11660.1 28.571 651 395 15 9 607 4 636 3.31e-78 263
Msa1019000 AT2G32120.1 31.373 510 312 12 8 505 30 513 1.89e-69 235
Msa1019000 AT2G32120.2 31.373 510 312 12 8 505 30 513 1.89e-69 235
Msa1019000 AT1G11660.2 28.247 616 372 15 44 607 2 599 3.62e-68 235
Msa1019000 AT4G16660.2 26.415 477 316 10 5 458 47 511 7.34e-48 180
Msa1019000 AT4G16660.1 26.415 477 316 10 5 458 23 487 8.29e-48 180

Find 121 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTGCTGAAACATATT+TGG 0.113940 7_1:-40066451 Msa1019000:CDS
CATGGTGTTGTCTAAGTTAA+AGG 0.173778 7_1:-40066472 Msa1019000:CDS
TCAAAACAAACATTGATATT+TGG 0.181030 7_1:+40065385 None:intergenic
TTCAATAGTTGTTGAATCTT+TGG 0.191487 7_1:+40065790 None:intergenic
ACTGCAGCTGCTATTGCTTA+TGG 0.208608 7_1:-40066303 Msa1019000:CDS
TGGTTTGGAACAACCTTAAA+AGG 0.212043 7_1:+40066567 None:intergenic
TTGATATTTGGAACCTTTCT+TGG 0.239641 7_1:+40065397 None:intergenic
TGTTGATGTTAATGGAATTT+TGG 0.249963 7_1:-40065362 Msa1019000:CDS
GTTTCAACACCAAGACTAAA+AGG 0.273894 7_1:+40065616 None:intergenic
TACTATGATCCCTACGAAAA+AGG 0.295550 7_1:-40065557 Msa1019000:CDS
CAATCACGGGTTTGTCTTTG+TGG 0.307374 7_1:+40066547 None:intergenic
CAGTGAGAATTCCAAAGCTT+TGG 0.318063 7_1:-40066061 Msa1019000:CDS
ATCATTCTTCTCATCTCTTC+AGG 0.329446 7_1:+40065265 None:intergenic
AATGTTCTTGTCTTTGATCT+TGG 0.331932 7_1:-40066246 Msa1019000:CDS
AGTGAGAATTCCAAAGCTTT+GGG 0.334628 7_1:-40066060 Msa1019000:CDS
TTCAACAAGACATAAGGTTT+TGG 0.340100 7_1:-40066590 Msa1019000:CDS
ACACGGTTCCCTTGGTCGTT+TGG 0.354947 7_1:+40066750 None:intergenic
ACTTTGGGAGATACTCATTT+GGG 0.360641 7_1:-40066162 Msa1019000:CDS
TTCAAGGTTAAGGCCACTTT+GGG 0.364020 7_1:-40066177 Msa1019000:CDS
GAGGGATGCCGAGCGGTATA+AGG 0.373164 7_1:-40065242 Msa1019000:CDS
GAAATTGCTGAAACATATTT+GGG 0.374370 7_1:-40066450 Msa1019000:CDS
ACGGGTTTGTCTTTGTGGTT+TGG 0.375126 7_1:+40066552 None:intergenic
AGCTGCTATTGCTTATGGTT+TGG 0.376546 7_1:-40066298 Msa1019000:CDS
CACTTTGGGAGATACTCATT+TGG 0.379211 7_1:-40066163 Msa1019000:CDS
GTTCATGAGTTTGTTCTTGT+AGG 0.379423 7_1:-40065829 Msa1019000:CDS
AAAGATGCAGGGAAAATTGC+TGG 0.381725 7_1:-40066357 Msa1019000:CDS
ACTCATCAATTTCTGCCAAT+TGG 0.383486 7_1:+40065089 None:intergenic
CGAAGGAATGTTCAAGGTTA+AGG 0.387070 7_1:-40066187 Msa1019000:CDS
ACCGACACTGAAAGATTAAT+AGG 0.390230 7_1:-40066705 Msa1019000:CDS
TCTTAACCTCCCCAAAGCTT+TGG 0.400779 7_1:+40066050 None:intergenic
AAAGATTCAACAACTATTGA+AGG 0.402328 7_1:-40065788 Msa1019000:CDS
CTTGTCTTTGATCTTGGTGG+TGG 0.402810 7_1:-40066240 Msa1019000:CDS
TTTGATGCCAAACGTTTGAT+TGG 0.402974 7_1:-40066636 Msa1019000:CDS
GTTCTTGTCTTTGATCTTGG+TGG 0.414303 7_1:-40066243 Msa1019000:CDS
TTATGTCTTGTTGAACTGAT+TGG 0.416899 7_1:+40066598 None:intergenic
AGAATTATGTTTATGAAATG+AGG 0.432257 7_1:-40065171 Msa1019000:CDS
CATGAGTTTGTTCTTGTAGG+AGG 0.437477 7_1:-40065826 Msa1019000:CDS
GTTCAAGGTTAAGGCCACTT+TGG 0.441611 7_1:-40066178 Msa1019000:CDS
GGATGAGGAGGTTAAGAAGA+AGG 0.443092 7_1:-40065215 Msa1019000:CDS
AATCAGTTCAACAAGACATA+AGG 0.446501 7_1:-40066596 Msa1019000:CDS
TCGGTGAAGGCAACGTAAGA+AGG 0.448873 7_1:+40066723 None:intergenic
CCCGATGAAGCTGTAGCATA+TGG 0.449147 7_1:-40065715 Msa1019000:CDS
AAATTTGAGCTCTCAGCAGC+AGG 0.450657 7_1:-40065436 Msa1019000:CDS
GTAGGGATCATAGTATTCTT+CGG 0.456815 7_1:+40065565 None:intergenic
AGTCTTGGTGTTGAAACTAA+AGG 0.463181 7_1:-40065610 Msa1019000:CDS
CTCTTTAGTAGTACCAAGAA+AGG 0.463823 7_1:-40065410 Msa1019000:CDS
GCGACGACCAATCAAACGTT+TGG 0.486511 7_1:+40066629 None:intergenic
ATGAGTTTGTTCTTGTAGGA+GGG 0.488901 7_1:-40065825 Msa1019000:CDS
TGTACCAAGGTCAATGCCTA+TGG 0.490620 7_1:+40066821 None:intergenic
GGAAACTGTGGAAAAGTGTT+TGG 0.491269 7_1:-40065878 Msa1019000:CDS
TGAGTTTGAATTCAAGAAGC+AGG 0.491801 7_1:-40065071 Msa1019000:CDS
GAAGAAGCTTGAGAAGGTAG+TGG 0.492150 7_1:-40065140 Msa1019000:CDS
CAAGAACAAACTCATGAACT+TGG 0.496491 7_1:+40065833 None:intergenic
TGAATTCAAGAAGCAGGAGT+TGG 0.497584 7_1:-40065065 Msa1019000:CDS
TCCTTCGTCAACGGTCACTA+AGG 0.501097 7_1:+40066203 None:intergenic
CCATATGCTACAGCTTCATC+GGG 0.502097 7_1:+40065715 None:intergenic
GAATTATGTTTATGAAATGA+GGG 0.504803 7_1:-40065170 Msa1019000:CDS
ATGGCTTGACAGAAACCAAT+TGG 0.505887 7_1:-40065104 Msa1019000:CDS
GCGGTATAAGGTAGAGGATG+AGG 0.507459 7_1:-40065230 Msa1019000:CDS
GCCATATGCTACAGCTTCAT+CGG 0.515011 7_1:+40065714 None:intergenic
AAGGGGTGACACGGTTCCCT+TGG 0.517703 7_1:+40066742 None:intergenic
ACCTATTAATCTTTCAGTGT+CGG 0.522436 7_1:+40066704 None:intergenic
AGACAAGCTACAAAAGATGC+AGG 0.525606 7_1:-40066369 Msa1019000:CDS
TGTGAGTTGTTGAAGTAAGC+AGG 0.526143 7_1:+40066393 None:intergenic
ATTGAGCTTGATTCACTATG+TGG 0.530275 7_1:-40065976 Msa1019000:CDS
CGTTGACGAAGGAATGTTCA+AGG 0.532858 7_1:-40066193 Msa1019000:CDS
ATCACTATCACCAACATTGA+GGG 0.534042 7_1:-40065298 Msa1019000:CDS
AGCTTGATTCACTATGTGGA+GGG 0.534646 7_1:-40065972 Msa1019000:CDS
CAATATTGCTGCTTGAACTG+CGG 0.535770 7_1:+40065690 None:intergenic
TGCCGAGCGGTATAAGGTAG+AGG 0.536561 7_1:-40065236 Msa1019000:CDS
CGGTGAAGGCAACGTAAGAA+GGG 0.538770 7_1:+40066724 None:intergenic
TAGTGGAGGAAAGTATAGAA+TGG 0.539580 7_1:-40065123 Msa1019000:CDS
ATCCTCTACCTTATACCGCT+CGG 0.541357 7_1:+40065234 None:intergenic
TTGTAATTGACAGCAATCAC+GGG 0.544513 7_1:+40066534 None:intergenic
TGTGGAAAAGTGTTTGGTTG+AGG 0.548325 7_1:-40065872 Msa1019000:CDS
GAAGCTTGAGAAGGTAGTGG+AGG 0.549564 7_1:-40065137 Msa1019000:CDS
AAGGAAATGTTTAGAGTCAA+CGG 0.552380 7_1:-40065769 Msa1019000:CDS
ACCTCAAGAGATATCTTCCA+TGG 0.553297 7_1:-40066490 Msa1019000:CDS
TTTGTAATTGACAGCAATCA+CGG 0.553769 7_1:+40066533 None:intergenic
CTTGAACATTCCTTCGTCAA+CGG 0.564856 7_1:+40066194 None:intergenic
AGAGATGAGAAGAATGATGA+GGG 0.564938 7_1:-40065260 Msa1019000:CDS
TAATCTTTCAGTGTCGGTGA+AGG 0.565703 7_1:+40066710 None:intergenic
GCAGCAATATTGAATACTGA+AGG 0.571285 7_1:-40065679 Msa1019000:CDS
TTGGGAGATACTCATTTGGG+TGG 0.571754 7_1:-40066159 Msa1019000:CDS
GATCACTATCACCAACATTG+AGG 0.578963 7_1:-40065299 Msa1019000:CDS
GAGAGTGAAGAAGCTTGAGA+AGG 0.581572 7_1:-40065146 Msa1019000:CDS
TATGAAATAATTCAACAAGA+CGG 0.584129 7_1:+40066109 None:intergenic
ACTAAGCCTTCCCTCAATGT+TGG 0.585019 7_1:+40065288 None:intergenic
GTATCGATCAAAGTGTATGA+AGG 0.587666 7_1:-40065496 Msa1019000:CDS
TACACTATCTTGATTATCAG+AGG 0.588367 7_1:+40065516 None:intergenic
GACAAGAAAATGTGGCGAGA+AGG 0.592688 7_1:-40066276 Msa1019000:CDS
ATTTCATAGAAAGTACAAGA+AGG 0.593476 7_1:-40066094 Msa1019000:CDS
GAGCTTGATTCACTATGTGG+AGG 0.595124 7_1:-40065973 Msa1019000:CDS
TGCAGCTGTAGCTTGTACCA+AGG 0.595496 7_1:+40066808 None:intergenic
GTATAAGGTAGAGGATGAGG+AGG 0.602447 7_1:-40065227 Msa1019000:CDS
AGAATTCCAAAGCTTTGGGG+AGG 0.611200 7_1:-40066056 Msa1019000:CDS
TAAGCAATAGCAGCTGCAGT+AGG 0.618882 7_1:+40066306 None:intergenic
GTGATTGCTGTCAATTACAA+AGG 0.623404 7_1:-40066531 Msa1019000:CDS
GTGAGAATTCCAAAGCTTTG+GGG 0.624343 7_1:-40066059 Msa1019000:CDS
AAGAGATGAGAAGAATGATG+AGG 0.628540 7_1:-40065261 Msa1019000:CDS
CAACGTAAGAAGGGGTGACA+CGG 0.629570 7_1:+40066733 None:intergenic
AAATCCATAGGCATTGACCT+TGG 0.630161 7_1:-40066825 Msa1019000:CDS
AGATCATTCCAAACGACCAA+GGG 0.630317 7_1:-40066758 Msa1019000:CDS
GAGATCATTCCAAACGACCA+AGG 0.630381 7_1:-40066759 Msa1019000:CDS
TCCTTAGTGACCGTTGACGA+AGG 0.634054 7_1:-40066204 Msa1019000:CDS
AATTTGAGCTCTCAGCAGCA+GGG 0.636454 7_1:-40065435 Msa1019000:CDS
CAAATGAGTATCTCCCAAAG+TGG 0.637746 7_1:+40066164 None:intergenic
ACCATGGAAGATATCTCTTG+AGG 0.641800 7_1:+40066489 None:intergenic
GACAAGCTACAAAAGATGCA+GGG 0.645331 7_1:-40066368 Msa1019000:CDS
CTATCACCAACATTGAGGGA+AGG 0.646725 7_1:-40065294 Msa1019000:CDS
ATGGTTTGGACAAGAAAATG+TGG 0.654549 7_1:-40066284 Msa1019000:CDS
CAGCATGCGAGAAAGCAAAG+AGG 0.658762 7_1:-40066026 Msa1019000:CDS
AGGAGAACATGCTAAGACCG+AGG 0.663006 7_1:-40065476 Msa1019000:CDS
GGTGAAGGCAACGTAAGAAG+GGG 0.669245 7_1:+40066725 None:intergenic
ATTGCAGTGTGGCGAAACAA+TGG 0.672404 7_1:-40066786 Msa1019000:CDS
CTTTAACTTAGACAACACCA+TGG 0.681981 7_1:+40066473 None:intergenic
CTGCTGAAGATGAGACACAA+GGG 0.687282 7_1:-40065333 Msa1019000:CDS
GCTACAGCTGCATTGCAGTG+TGG 0.691567 7_1:-40066797 Msa1019000:CDS
CTTGGTGTTGAAACTAAAGG+TGG 0.707841 7_1:-40065607 Msa1019000:CDS
GAATGATGAGGGATGCCGAG+CGG 0.719182 7_1:-40065249 Msa1019000:CDS
ACTGCTGAAGATGAGACACA+AGG 0.722680 7_1:-40065334 Msa1019000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGATTTTGATAACAATT+TGG - chr7_1:40065749-40065768 Msa1019000:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG + chr7_1:40065779-40065798 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr7_1:40065965-40065984 Msa1019000:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG + chr7_1:40066503-40066522 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr7_1:40066714-40066733 Msa1019000:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr7_1:40066715-40066734 Msa1019000:CDS 20.0%
!!! TGTTGATTTTGATAACAATT+TGG - chr7_1:40065749-40065768 Msa1019000:CDS 20.0%
!! TATGAAATAATTCAACAAGA+CGG + chr7_1:40065779-40065798 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr7_1:40065965-40065984 Msa1019000:CDS 20.0%
!! TCAAAACAAACATTGATATT+TGG + chr7_1:40066503-40066522 None:intergenic 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr7_1:40066714-40066733 Msa1019000:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr7_1:40066715-40066734 Msa1019000:CDS 20.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG + chr7_1:40065214-40065233 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG - chr7_1:40065435-40065454 Msa1019000:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr7_1:40065791-40065810 Msa1019000:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG + chr7_1:40066098-40066117 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG - chr7_1:40066097-40066116 Msa1019000:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr7_1:40066515-40066534 Msa1019000:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr7_1:40066523-40066542 Msa1019000:CDS 25.0%
!!! ATTTTTGGCTAATTGGTTTA+TGG + chr7_1:40065214-40065233 None:intergenic 25.0%
! GAAATTGCTGAAACATATTT+GGG - chr7_1:40065435-40065454 Msa1019000:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr7_1:40065791-40065810 Msa1019000:CDS 25.0%
! TTCAATAGTTGTTGAATCTT+TGG + chr7_1:40066098-40066117 None:intergenic 25.0%
! AAAGATTCAACAACTATTGA+AGG - chr7_1:40066097-40066116 Msa1019000:CDS 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr7_1:40066515-40066534 Msa1019000:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr7_1:40066523-40066542 Msa1019000:CDS 25.0%
ACAAGAAAAAGCAAATCCAT+AGG - chr7_1:40065048-40065067 Msa1019000:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG + chr7_1:40065184-40065203 None:intergenic 30.0%
! TTATGTCTTGTTGAACTGAT+TGG + chr7_1:40065290-40065309 None:intergenic 30.0%
AATCAGTTCAACAAGACATA+AGG - chr7_1:40065289-40065308 Msa1019000:CDS 30.0%
! TTCAACAAGACATAAGGTTT+TGG - chr7_1:40065295-40065314 Msa1019000:CDS 30.0%
TTTGTAATTGACAGCAATCA+CGG + chr7_1:40065355-40065374 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG + chr7_1:40065380-40065399 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG - chr7_1:40065434-40065453 Msa1019000:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr7_1:40065639-40065658 Msa1019000:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr7_1:40065953-40065972 Msa1019000:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG - chr7_1:40065986-40066005 Msa1019000:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG - chr7_1:40066116-40066135 Msa1019000:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG + chr7_1:40066340-40066359 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG + chr7_1:40066341-40066360 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG + chr7_1:40066372-40066391 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG + chr7_1:40066491-40066510 None:intergenic 30.0%
ACAAGAAAAAGCAAATCCAT+AGG - chr7_1:40065048-40065067 Msa1019000:CDS 30.0%
ACCTATTAATCTTTCAGTGT+CGG + chr7_1:40065184-40065203 None:intergenic 30.0%
! TTATGTCTTGTTGAACTGAT+TGG + chr7_1:40065290-40065309 None:intergenic 30.0%
AATCAGTTCAACAAGACATA+AGG - chr7_1:40065289-40065308 Msa1019000:CDS 30.0%
! TTCAACAAGACATAAGGTTT+TGG - chr7_1:40065295-40065314 Msa1019000:CDS 30.0%
TTTGTAATTGACAGCAATCA+CGG + chr7_1:40065355-40065374 None:intergenic 30.0%
! GAGGTGAAAAATGTTTTTCT+TGG + chr7_1:40065380-40065399 None:intergenic 30.0%
GGAAATTGCTGAAACATATT+TGG - chr7_1:40065434-40065453 Msa1019000:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr7_1:40065639-40065658 Msa1019000:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr7_1:40065953-40065972 Msa1019000:CDS 30.0%
! GGATTTGTTCAAAAAATGCA+TGG - chr7_1:40065986-40066005 Msa1019000:CDS 30.0%
! AAGGAAATGTTTAGAGTCAA+CGG - chr7_1:40066116-40066135 Msa1019000:CDS 30.0%
!! ATACATTCTCCTTTTTCGTA+GGG + chr7_1:40066340-40066359 None:intergenic 30.0%
!! AATACATTCTCCTTTTTCGT+AGG + chr7_1:40066341-40066360 None:intergenic 30.0%
TACACTATCTTGATTATCAG+AGG + chr7_1:40066372-40066391 None:intergenic 30.0%
! TTGATATTTGGAACCTTTCT+TGG + chr7_1:40066491-40066510 None:intergenic 30.0%
ACCGACACTGAAAGATTAAT+AGG - chr7_1:40065180-40065199 Msa1019000:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG + chr7_1:40065221-40065240 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG + chr7_1:40065229-40065248 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG + chr7_1:40065247-40065266 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr7_1:40065249-40065268 Msa1019000:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr7_1:40065305-40065324 Msa1019000:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr7_1:40065321-40065340 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG + chr7_1:40065354-40065373 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG - chr7_1:40065354-40065373 Msa1019000:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG + chr7_1:40065415-40065434 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG - chr7_1:40065413-40065432 Msa1019000:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG - chr7_1:40065544-40065563 Msa1019000:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr7_1:40065601-40065620 Msa1019000:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr7_1:40065723-40065742 Msa1019000:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr7_1:40065825-40065844 Msa1019000:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG - chr7_1:40065909-40065928 Msa1019000:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG - chr7_1:40065995-40066014 Msa1019000:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG + chr7_1:40066055-40066074 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG - chr7_1:40066056-40066075 Msa1019000:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG - chr7_1:40066060-40066079 Msa1019000:CDS 35.0%
GCAGCAATATTGAATACTGA+AGG - chr7_1:40066206-40066225 Msa1019000:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr7_1:40066260-40066279 Msa1019000:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr7_1:40066272-40066291 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr7_1:40066275-40066294 Msa1019000:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG + chr7_1:40066323-40066342 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG - chr7_1:40066328-40066347 Msa1019000:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG - chr7_1:40066389-40066408 Msa1019000:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG - chr7_1:40066475-40066494 Msa1019000:CDS 35.0%
ATCACTATCACCAACATTGA+GGG - chr7_1:40066587-40066606 Msa1019000:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG + chr7_1:40066623-40066642 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr7_1:40066624-40066643 Msa1019000:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr7_1:40066625-40066644 Msa1019000:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr7_1:40066762-40066781 Msa1019000:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr7_1:40066799-40066818 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr7_1:40066814-40066833 Msa1019000:CDS 35.0%
ACCGACACTGAAAGATTAAT+AGG - chr7_1:40065180-40065199 Msa1019000:CDS 35.0%
!!! TGTGTGGATTTTTGGCTAAT+TGG + chr7_1:40065221-40065240 None:intergenic 35.0%
!!! AATGGTGTTGTGTGGATTTT+TGG + chr7_1:40065229-40065248 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+TGG + chr7_1:40065247-40065266 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr7_1:40065249-40065268 Msa1019000:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr7_1:40065305-40065324 Msa1019000:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr7_1:40065321-40065340 None:intergenic 35.0%
TTGTAATTGACAGCAATCAC+GGG + chr7_1:40065354-40065373 None:intergenic 35.0%
GTGATTGCTGTCAATTACAA+AGG - chr7_1:40065354-40065373 Msa1019000:CDS 35.0%
! CTTTAACTTAGACAACACCA+TGG + chr7_1:40065415-40065434 None:intergenic 35.0%
!! CATGGTGTTGTCTAAGTTAA+AGG - chr7_1:40065413-40065432 Msa1019000:CDS 35.0%
!!! TTGCTGGTTTTAATGTGATG+AGG - chr7_1:40065544-40065563 Msa1019000:CDS 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr7_1:40065601-40065620 Msa1019000:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr7_1:40065723-40065742 Msa1019000:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr7_1:40065825-40065844 Msa1019000:CDS 35.0%
ATTGAGCTTGATTCACTATG+TGG - chr7_1:40065909-40065928 Msa1019000:CDS 35.0%
CAAAAAATGCATGGAAACTG+TGG - chr7_1:40065995-40066014 Msa1019000:CDS 35.0%
CAAGAACAAACTCATGAACT+TGG + chr7_1:40066055-40066074 None:intergenic 35.0%
! GTTCATGAGTTTGTTCTTGT+AGG - chr7_1:40066056-40066075 Msa1019000:CDS 35.0%
! ATGAGTTTGTTCTTGTAGGA+GGG - chr7_1:40066060-40066079 Msa1019000:CDS 35.0%
GCAGCAATATTGAATACTGA+AGG - chr7_1:40066206-40066225 Msa1019000:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr7_1:40066260-40066279 Msa1019000:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr7_1:40066272-40066291 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr7_1:40066275-40066294 Msa1019000:CDS 35.0%
GTAGGGATCATAGTATTCTT+CGG + chr7_1:40066323-40066342 None:intergenic 35.0%
TACTATGATCCCTACGAAAA+AGG - chr7_1:40066328-40066347 Msa1019000:CDS 35.0%
! GTATCGATCAAAGTGTATGA+AGG - chr7_1:40066389-40066408 Msa1019000:CDS 35.0%
CTCTTTAGTAGTACCAAGAA+AGG - chr7_1:40066475-40066494 Msa1019000:CDS 35.0%
ATCACTATCACCAACATTGA+GGG - chr7_1:40066587-40066606 Msa1019000:CDS 35.0%
ATCATTCTTCTCATCTCTTC+AGG + chr7_1:40066623-40066642 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr7_1:40066624-40066643 Msa1019000:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr7_1:40066625-40066644 Msa1019000:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr7_1:40066762-40066781 Msa1019000:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr7_1:40066799-40066818 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr7_1:40066814-40066833 Msa1019000:CDS 35.0%
!! AAATCCATAGGCATTGACCT+TGG - chr7_1:40065060-40065079 Msa1019000:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG - chr7_1:40065127-40065146 Msa1019000:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG + chr7_1:40065178-40065197 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG + chr7_1:40065237-40065256 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG - chr7_1:40065395-40065414 Msa1019000:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr7_1:40065399-40065418 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr7_1:40065495-40065514 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr7_1:40065516-40065535 Msa1019000:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG - chr7_1:40065517-40065536 Msa1019000:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG - chr7_1:40065528-40065547 Msa1019000:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr7_1:40065587-40065606 Msa1019000:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr7_1:40065642-40065661 Msa1019000:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG + chr7_1:40065694-40065713 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG - chr7_1:40065698-40065717 Msa1019000:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG - chr7_1:40065708-40065727 Msa1019000:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr7_1:40065724-40065743 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr7_1:40065722-40065741 Msa1019000:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr7_1:40065824-40065843 Msa1019000:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr7_1:40065826-40065845 Msa1019000:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG - chr7_1:40065913-40065932 Msa1019000:CDS 40.0%
!! GGAAACTGTGGAAAAGTGTT+TGG - chr7_1:40066007-40066026 Msa1019000:CDS 40.0%
!! TGTGGAAAAGTGTTTGGTTG+AGG - chr7_1:40066013-40066032 Msa1019000:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG - chr7_1:40066059-40066078 Msa1019000:CDS 40.0%
! TCGGGATTAATGCTTTTGCA+AGG + chr7_1:40066155-40066174 None:intergenic 40.0%
! CAATATTGCTGCTTGAACTG+CGG + chr7_1:40066198-40066217 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr7_1:40066278-40066297 Msa1019000:CDS 40.0%
GATCACTATCACCAACATTG+AGG - chr7_1:40066586-40066605 Msa1019000:CDS 40.0%
ATGGCTTGACAGAAACCAAT+TGG - chr7_1:40066781-40066800 Msa1019000:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr7_1:40066820-40066839 Msa1019000:CDS 40.0%
!! AAATCCATAGGCATTGACCT+TGG - chr7_1:40065060-40065079 Msa1019000:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG - chr7_1:40065127-40065146 Msa1019000:CDS 40.0%
!! TAATCTTTCAGTGTCGGTGA+AGG + chr7_1:40065178-40065197 None:intergenic 40.0%
!! GCATCAAAAATGGTGTTGTG+TGG + chr7_1:40065237-40065256 None:intergenic 40.0%
ACCTCAAGAGATATCTTCCA+TGG - chr7_1:40065395-40065414 Msa1019000:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr7_1:40065399-40065418 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr7_1:40065495-40065514 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr7_1:40065516-40065535 Msa1019000:CDS 40.0%
GACAAGCTACAAAAGATGCA+GGG - chr7_1:40065517-40065536 Msa1019000:CDS 40.0%
AAAGATGCAGGGAAAATTGC+TGG - chr7_1:40065528-40065547 Msa1019000:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr7_1:40065587-40065606 Msa1019000:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr7_1:40065642-40065661 Msa1019000:CDS 40.0%
CTTGAACATTCCTTCGTCAA+CGG + chr7_1:40065694-40065713 None:intergenic 40.0%
CGAAGGAATGTTCAAGGTTA+AGG - chr7_1:40065698-40065717 Msa1019000:CDS 40.0%
! TTCAAGGTTAAGGCCACTTT+GGG - chr7_1:40065708-40065727 Msa1019000:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr7_1:40065724-40065743 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr7_1:40065722-40065741 Msa1019000:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr7_1:40065824-40065843 Msa1019000:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr7_1:40065826-40065845 Msa1019000:CDS 40.0%
AGCTTGATTCACTATGTGGA+GGG - chr7_1:40065913-40065932 Msa1019000:CDS 40.0%
!! GGAAACTGTGGAAAAGTGTT+TGG - chr7_1:40066007-40066026 Msa1019000:CDS 40.0%
!! TGTGGAAAAGTGTTTGGTTG+AGG - chr7_1:40066013-40066032 Msa1019000:CDS 40.0%
! CATGAGTTTGTTCTTGTAGG+AGG - chr7_1:40066059-40066078 Msa1019000:CDS 40.0%
! TCGGGATTAATGCTTTTGCA+AGG + chr7_1:40066155-40066174 None:intergenic 40.0%
! CAATATTGCTGCTTGAACTG+CGG + chr7_1:40066198-40066217 None:intergenic 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr7_1:40066278-40066297 Msa1019000:CDS 40.0%
GATCACTATCACCAACATTG+AGG - chr7_1:40066586-40066605 Msa1019000:CDS 40.0%
ATGGCTTGACAGAAACCAAT+TGG - chr7_1:40066781-40066800 Msa1019000:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr7_1:40066820-40066839 Msa1019000:CDS 40.0%
TGTACCAAGGTCAATGCCTA+TGG + chr7_1:40065067-40065086 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG - chr7_1:40065099-40065118 Msa1019000:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG - chr7_1:40065126-40065145 Msa1019000:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG + chr7_1:40065336-40065355 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG + chr7_1:40065341-40065360 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr7_1:40065582-40065601 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr7_1:40065582-40065601 Msa1019000:CDS 45.0%
GACAAGAAAATGTGGCGAGA+AGG - chr7_1:40065609-40065628 Msa1019000:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr7_1:40065645-40065664 Msa1019000:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG - chr7_1:40065692-40065711 Msa1019000:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG - chr7_1:40065707-40065726 Msa1019000:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr7_1:40065726-40065745 Msa1019000:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr7_1:40065829-40065848 Msa1019000:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr7_1:40065838-40065857 None:intergenic 45.0%
GAGCTTGATTCACTATGTGG+AGG - chr7_1:40065912-40065931 Msa1019000:CDS 45.0%
CCATATGCTACAGCTTCATC+GGG + chr7_1:40066173-40066192 None:intergenic 45.0%
GCCATATGCTACAGCTTCAT+CGG + chr7_1:40066174-40066193 None:intergenic 45.0%
! ACCGAGGACAACTTTTTGCT+CGG - chr7_1:40066425-40066444 Msa1019000:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+CGG + chr7_1:40066429-40066448 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG - chr7_1:40066449-40066468 Msa1019000:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG - chr7_1:40066450-40066469 Msa1019000:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG - chr7_1:40066551-40066570 Msa1019000:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG - chr7_1:40066552-40066571 Msa1019000:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG - chr7_1:40066591-40066610 Msa1019000:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG + chr7_1:40066600-40066619 None:intergenic 45.0%
ATCCTCTACCTTATACCGCT+CGG + chr7_1:40066654-40066673 None:intergenic 45.0%
GTATAAGGTAGAGGATGAGG+AGG - chr7_1:40066658-40066677 Msa1019000:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG - chr7_1:40066670-40066689 Msa1019000:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG - chr7_1:40066739-40066758 Msa1019000:CDS 45.0%
GAAGAAGCTTGAGAAGGTAG+TGG - chr7_1:40066745-40066764 Msa1019000:CDS 45.0%
TGTACCAAGGTCAATGCCTA+TGG + chr7_1:40065067-40065086 None:intergenic 45.0%
ATTGCAGTGTGGCGAAACAA+TGG - chr7_1:40065099-40065118 Msa1019000:CDS 45.0%
GAGATCATTCCAAACGACCA+AGG - chr7_1:40065126-40065145 Msa1019000:CDS 45.0%
ACGGGTTTGTCTTTGTGGTT+TGG + chr7_1:40065336-40065355 None:intergenic 45.0%
CAATCACGGGTTTGTCTTTG+TGG + chr7_1:40065341-40065360 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr7_1:40065582-40065601 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr7_1:40065582-40065601 Msa1019000:CDS 45.0%
GACAAGAAAATGTGGCGAGA+AGG - chr7_1:40065609-40065628 Msa1019000:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr7_1:40065645-40065664 Msa1019000:CDS 45.0%
CGTTGACGAAGGAATGTTCA+AGG - chr7_1:40065692-40065711 Msa1019000:CDS 45.0%
GTTCAAGGTTAAGGCCACTT+TGG - chr7_1:40065707-40065726 Msa1019000:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr7_1:40065726-40065745 Msa1019000:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr7_1:40065829-40065848 Msa1019000:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr7_1:40065838-40065857 None:intergenic 45.0%
GAGCTTGATTCACTATGTGG+AGG - chr7_1:40065912-40065931 Msa1019000:CDS 45.0%
CCATATGCTACAGCTTCATC+GGG + chr7_1:40066173-40066192 None:intergenic 45.0%
GCCATATGCTACAGCTTCAT+CGG + chr7_1:40066174-40066193 None:intergenic 45.0%
! ACCGAGGACAACTTTTTGCT+CGG - chr7_1:40066425-40066444 Msa1019000:CDS 45.0%
ACCGAGCAAAAAGTTGTCCT+CGG + chr7_1:40066429-40066448 None:intergenic 45.0%
AAATTTGAGCTCTCAGCAGC+AGG - chr7_1:40066449-40066468 Msa1019000:CDS 45.0%
AATTTGAGCTCTCAGCAGCA+GGG - chr7_1:40066450-40066469 Msa1019000:CDS 45.0%
ACTGCTGAAGATGAGACACA+AGG - chr7_1:40066551-40066570 Msa1019000:CDS 45.0%
CTGCTGAAGATGAGACACAA+GGG - chr7_1:40066552-40066571 Msa1019000:CDS 45.0%
CTATCACCAACATTGAGGGA+AGG - chr7_1:40066591-40066610 Msa1019000:CDS 45.0%
ACTAAGCCTTCCCTCAATGT+TGG + chr7_1:40066600-40066619 None:intergenic 45.0%
ATCCTCTACCTTATACCGCT+CGG + chr7_1:40066654-40066673 None:intergenic 45.0%
GTATAAGGTAGAGGATGAGG+AGG - chr7_1:40066658-40066677 Msa1019000:CDS 45.0%
GGATGAGGAGGTTAAGAAGA+AGG - chr7_1:40066670-40066689 Msa1019000:CDS 45.0%
GAGAGTGAAGAAGCTTGAGA+AGG - chr7_1:40066739-40066758 Msa1019000:CDS 45.0%
GAAGAAGCTTGAGAAGGTAG+TGG - chr7_1:40066745-40066764 Msa1019000:CDS 45.0%
! TGCAGCTGTAGCTTGTACCA+AGG + chr7_1:40065080-40065099 None:intergenic 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr7_1:40065155-40065174 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr7_1:40065163-40065182 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr7_1:40065164-40065183 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr7_1:40065165-40065184 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG + chr7_1:40065259-40065278 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG - chr7_1:40065681-40065700 Msa1019000:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG + chr7_1:40065685-40065704 None:intergenic 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr7_1:40065859-40065878 Msa1019000:CDS 50.0%
CCCGATGAAGCTGTAGCATA+TGG - chr7_1:40066170-40066189 Msa1019000:CDS 50.0%
AGGAGAACATGCTAAGACCG+AGG - chr7_1:40066409-40066428 Msa1019000:CDS 50.0%
GCGGTATAAGGTAGAGGATG+AGG - chr7_1:40066655-40066674 Msa1019000:CDS 50.0%
! GAAGCTTGAGAAGGTAGTGG+AGG - chr7_1:40066748-40066767 Msa1019000:CDS 50.0%
! TGCAGCTGTAGCTTGTACCA+AGG + chr7_1:40065080-40065099 None:intergenic 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr7_1:40065155-40065174 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr7_1:40065163-40065182 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr7_1:40065164-40065183 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr7_1:40065165-40065184 None:intergenic 50.0%
GCGACGACCAATCAAACGTT+TGG + chr7_1:40065259-40065278 None:intergenic 50.0%
TCCTTAGTGACCGTTGACGA+AGG - chr7_1:40065681-40065700 Msa1019000:CDS 50.0%
TCCTTCGTCAACGGTCACTA+AGG + chr7_1:40065685-40065704 None:intergenic 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr7_1:40065859-40065878 Msa1019000:CDS 50.0%
CCCGATGAAGCTGTAGCATA+TGG - chr7_1:40066170-40066189 Msa1019000:CDS 50.0%
AGGAGAACATGCTAAGACCG+AGG - chr7_1:40066409-40066428 Msa1019000:CDS 50.0%
GCGGTATAAGGTAGAGGATG+AGG - chr7_1:40066655-40066674 Msa1019000:CDS 50.0%
! GAAGCTTGAGAAGGTAGTGG+AGG - chr7_1:40066748-40066767 Msa1019000:CDS 50.0%
GCTACAGCTGCATTGCAGTG+TGG - chr7_1:40065088-40065107 Msa1019000:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr7_1:40065138-40065157 None:intergenic 55.0%
GAATGATGAGGGATGCCGAG+CGG - chr7_1:40066636-40066655 Msa1019000:CDS 55.0%
TGCCGAGCGGTATAAGGTAG+AGG - chr7_1:40066649-40066668 Msa1019000:CDS 55.0%
GCTACAGCTGCATTGCAGTG+TGG - chr7_1:40065088-40065107 Msa1019000:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr7_1:40065138-40065157 None:intergenic 55.0%
GAATGATGAGGGATGCCGAG+CGG - chr7_1:40066636-40066655 Msa1019000:CDS 55.0%
TGCCGAGCGGTATAAGGTAG+AGG - chr7_1:40066649-40066668 Msa1019000:CDS 55.0%
AAGGGGTGACACGGTTCCCT+TGG + chr7_1:40065146-40065165 None:intergenic 60.0%
GAGGGATGCCGAGCGGTATA+AGG - chr7_1:40066643-40066662 Msa1019000:CDS 60.0%
AAGGGGTGACACGGTTCCCT+TGG + chr7_1:40065146-40065165 None:intergenic 60.0%
GAGGGATGCCGAGCGGTATA+AGG - chr7_1:40066643-40066662 Msa1019000:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 40065042 40066865 40065042 ID=Msa1019000;Name=Msa1019000
chr7_1 mRNA 40065042 40066865 40065042 ID=Msa1019000-mRNA-1;Parent=Msa1019000;Name=Msa1019000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|607
chr7_1 exon 40065042 40066865 40065042 ID=Msa1019000-mRNA-1:exon:7739;Parent=Msa1019000-mRNA-1
chr7_1 CDS 40065042 40066865 40065042 ID=Msa1019000-mRNA-1:cds;Parent=Msa1019000-mRNA-1
Gene Sequence

>Msa1019000

ATGGCAACAAGAAAAAGCAAATCCATAGGCATTGACCTTGGTACAAGCTACAGCTGCATTGCAGTGTGGCGAAACAATGGTGTTGAGATCATTCCAAACGACCAAGGGAACCGTGTCACCCCTTCTTACGTTGCCTTCACCGACACTGAAAGATTAATAGGTGATGCTGCCATAAACCAATTAGCCAAAAATCCACACAACACCATTTTTGATGCCAAACGTTTGATTGGTCGTCGCTTCTCTGACCAATCAGTTCAACAAGACATAAGGTTTTGGCCTTTTAAGGTTGTTCCAAACCACAAAGACAAACCCGTGATTGCTGTCAATTACAAAGGCCAAGAAAAACATTTTTCACCTCAAGAGATATCTTCCATGGTGTTGTCTAAGTTAAAGGAAATTGCTGAAACATATTTGGGTCATGAAGAAGTGAAGAATGCTGTTATCACTGTTCCTGCTTACTTCAACAACTCACAGAGACAAGCTACAAAAGATGCAGGGAAAATTGCTGGTTTTAATGTGATGAGGATCATCAACGAGCCTACTGCAGCTGCTATTGCTTATGGTTTGGACAAGAAAATGTGGCGAGAAGGCGAGAAGAATGTTCTTGTCTTTGATCTTGGTGGTGGAACTTTTGATGTTTCCTTAGTGACCGTTGACGAAGGAATGTTCAAGGTTAAGGCCACTTTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCGTCTTGTTGAATTATTTCATAGAAAGTACAAGAAGGACTTGAAGATCAGTGAGAATTCCAAAGCTTTGGGGAGGTTAAGATCAGCATGCGAGAAAGCAAAGAGGTTACTTTCTTCATCATCACAAACAGTTATTGAGCTTGATTCACTATGTGGAGGGATTGATCTACATTTCACTGTTACTAGAGCTTTTTTTGAGGAAATAAACAAGGATTTGTTCAAAAAATGCATGGAAACTGTGGAAAAGTGTTTGGTTGAGGTAAAAATTAGTAAAAGCCAAGTTCATGAGTTTGTTCTTGTAGGAGGGTCTACTAGAATTCCAAAGATTCAACAACTATTGAAGGAAATGTTTAGAGTCAACGGAGAAGTCAAAGAGCCTTGCAAAAGCATTAATCCCGATGAAGCTGTAGCATATGGCGCCGCAGTTCAAGCAGCAATATTGAATACTGAAGGAGACAAGAAAATTGAAGATTTGTTGCTGTTAGATGTTATGCCTTTTAGTCTTGGTGTTGAAACTAAAGGTGGTGTCATGTCTGTTTTGATTCCGAAGAATACTATGATCCCTACGAAAAAGGAGAATGTATTCGCTATAGCCTCTGATAATCAAGATAGTGTATCGATCAAAGTGTATGAAGGAGAACATGCTAAGACCGAGGACAACTTTTTGCTCGGTAAATTTGAGCTCTCAGCAGCAGGGTGCTCTTTAGTAGTACCAAGAAAGGTTCCAAATATCAATGTTTGTTTTGATGTTGATGTTAATGGAATTTTGGAAGTTACTGCTGAAGATGAGACACAAGGGTTGAAAAAGAAGATCACTATCACCAACATTGAGGGAAGGCTTAGTCCTGAAGAGATGAGAAGAATGATGAGGGATGCCGAGCGGTATAAGGTAGAGGATGAGGAGGTTAAGAAGAAGGTGAAAGCAAAGAACTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAGAGTGAAGAAGCTTGAGAAGGTAGTGGAGGAAAGTATAGAATGGCTTGACAGAAACCAATTGGCAGAAATTGATGAGTTTGAATTCAAGAAGCAGGAGTTGGAAAATAGTATGAAGTTTCTCTAA
Protein sequence

>Msa1019000

MATRKSKSIGIDLGTSYSCIAVWRNNGVEIIPNDQGNRVTPSYVAFTDTERLIGDAAINQLAKNPHNTIFDAKRLIGRRFSDQSVQQDIRFWPFKVVPNHKDKPVIAVNYKGQEKHFSPQEISSMVLSKLKEIAETYLGHEEVKNAVITVPAYFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGLDKKMWREGEKNVLVFDLGGGTFDVSLVTVDEGMFKVKATLGDTHLGGVDFDNNLVNRLVELFHRKYKKDLKISENSKALGRLRSACEKAKRLLSSSSQTVIELDSLCGGIDLHFTVTRAFFEEINKDLFKKCMETVEKCLVEVKISKSQVHEFVLVGGSTRIPKIQQLLKEMFRVNGEVKEPCKSINPDEAVAYGAAVQAAILNTEGDKKIEDLLLLDVMPFSLGVETKGGVMSVLIPKNTMIPTKKENVFAIASDNQDSVSIKVYEGEHAKTEDNFLLGKFELSAAGCSLVVPRKVPNINVCFDVDVNGILEVTAEDETQGLKKKITITNIEGRLSPEEMRRMMRDAERYKVEDEEVKKKVKAKNLFENYVYEMRERVKKLEKVVEESIEWLDRNQLAEIDEFEFKKQELENSMKFL*