AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367870 MtrunA17_Chr3g0109931 92.000 200 16 0 1 200 1 200 9.00e-138 383
Msa0367870 MtrunA17_Chr8g0375391 49.541 109 49 3 93 200 175 278 4.95e-27 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367870 AT2G01990.1 37.745 204 96 6 21 200 17 213 7.91e-33 117
Msa0367870 AT2G01990.2 37.745 204 96 6 21 200 48 244 2.36e-32 117
Msa0367870 AT1G14630.1 37.968 187 101 5 21 200 48 226 8.42e-29 107
Msa0367870 AT5G48720.2 41.860 86 35 3 119 200 226 300 1.06e-11 62.8
Msa0367870 AT5G48720.4 41.860 86 35 3 119 200 226 300 1.06e-11 62.8
Msa0367870 AT5G48720.1 41.860 86 35 3 119 200 192 266 1.26e-11 62.4
Msa0367870 AT5G48720.3 41.860 86 35 3 119 200 192 266 1.26e-11 62.4

Find 65 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACATTTATGCATATT+TGG 0.148666 3_1:-63829271 None:intergenic
AACCGTGGTTATGGTATTTC+AGG 0.166700 3_1:+63828952 Msa0367870:CDS
TATACATACCTTGAAGTAAT+TGG 0.169435 3_1:-63828224 None:intergenic
GTGAAACTTCATTAAAATTA+TGG 0.232753 3_1:-63829125 None:intergenic
CAATCACTGGCTGGGATATT+TGG 0.233908 3_1:+63827992 Msa0367870:CDS
CACTTAATTAGTGCATGTTT+AGG 0.281358 3_1:+63829070 Msa0367870:three_prime_UTR
TTTCCTTTCCTCCATGGAAT+TGG 0.298126 3_1:+63827393 Msa0367870:exon
ACTTAATTAGTGCATGTTTA+GGG 0.320520 3_1:+63829071 Msa0367870:three_prime_UTR
GAGGCTCCATTACCATTATT+AGG 0.327547 3_1:+63829016 Msa0367870:CDS
TCAACCTTTAGTCCTAATAA+TGG 0.328259 3_1:-63829028 None:intergenic
TTGAAGTAATTGGGCTGCTT+TGG 0.351121 3_1:-63828214 None:intergenic
GGATGTGGAATTGGCTTTGA+TGG 0.358593 3_1:-63828889 None:intergenic
TGTATTTCAAACCGTGGTTA+TGG 0.360210 3_1:+63828943 Msa0367870:CDS
ACAGCCACAGGATGTGGAAT+TGG 0.391650 3_1:-63828898 None:intergenic
ACTCATTCAGATTTAACTCT+TGG 0.392699 3_1:+63827427 Msa0367870:CDS
GAAGAAAATGTTGGAAATAG+AGG 0.396185 3_1:-63828192 None:intergenic
CCAGGTTTCACCAGCTCAAA+TGG 0.402015 3_1:-63828811 None:intergenic
GAGTTAGTTTCACGAAATTA+CGG 0.402709 3_1:+63829097 Msa0367870:three_prime_UTR
ATGGACTCATCATCATTTGA+TGG 0.411072 3_1:-63828870 None:intergenic
CTAGATGCACAACTTCTTTG+AGG 0.413057 3_1:-63828602 None:intergenic
TTTCACTTTCCTTTCCTCCA+TGG 0.415325 3_1:+63827387 Msa0367870:exon
ATTACCATTATTAGGACTAA+AGG 0.415904 3_1:+63829024 Msa0367870:CDS
GTTTCCCCTTCAACTCCTCC+AGG 0.422860 3_1:-63828829 None:intergenic
CCATTTGAGCTGGTGAAACC+TGG 0.428678 3_1:+63828811 Msa0367870:CDS
ATACATACCTTGAAGTAATT+GGG 0.433333 3_1:-63828223 None:intergenic
AAGAAGTGGCAGCACTTACT+AGG 0.434363 3_1:+63828977 Msa0367870:CDS
TTCAAATTCAATCACTAGCT+AGG 0.440011 3_1:-63829349 None:intergenic
TTGAAGATGCAATCACTGGC+TGG 0.441092 3_1:+63827983 Msa0367870:CDS
TTTAGTCCTAATAATGGTAA+TGG 0.443297 3_1:-63829022 None:intergenic
TCAAATTCAATCACTAGCTA+GGG 0.443414 3_1:-63829348 None:intergenic
GTGAAACCTGGAGGAGTTGA+AGG 0.448286 3_1:+63828823 Msa0367870:CDS
GTGCTTCTACAGCTGAGTCT+TGG 0.458655 3_1:+63827932 Msa0367870:intron
AACCTACTCTCAAGATCAAA+AGG 0.460972 3_1:+63828035 Msa0367870:CDS
TTGGTATAAACTATATATGA+AGG 0.462472 3_1:-63829252 None:intergenic
AAAGCAGCCCAATTACTTCA+AGG 0.465374 3_1:+63828216 Msa0367870:CDS
TCTTCTACAGCCACAGGATG+TGG 0.472074 3_1:-63828904 None:intergenic
CACTTACTAGGATTCAAACT+AGG 0.484716 3_1:+63828989 Msa0367870:CDS
CCACGAGTTCGCCACAATCA+TGG 0.512350 3_1:-63829180 None:intergenic
GATTCCAATGTCCAATTCCA+TGG 0.514674 3_1:-63827404 None:intergenic
ACTTACTAGGATTCAAACTA+GGG 0.519902 3_1:+63828990 Msa0367870:CDS
TCCTCCATGGAATTGGACAT+TGG 0.529804 3_1:+63827400 Msa0367870:exon
AGGATTCAAACTAGGGGTAG+AGG 0.539013 3_1:+63828997 Msa0367870:CDS
TAACCACGGTTTGAAATACA+TGG 0.544046 3_1:-63828940 None:intergenic
GCTGCTTTGGAAGAAAATGT+TGG 0.550147 3_1:-63828201 None:intergenic
TGAAGATGCAATCACTGGCT+GGG 0.560320 3_1:+63827984 Msa0367870:CDS
AATAGCTTATCCATTTGAGC+TGG 0.561873 3_1:+63828801 Msa0367870:CDS
ATAGAATCTTCTACAGCCAC+AGG 0.564847 3_1:-63828910 None:intergenic
CCATGATTGTGGCGAACTCG+TGG 0.570273 3_1:+63829180 Msa0367870:three_prime_UTR
TAAAGGTTGAATTAAAGTGA+AGG 0.576780 3_1:+63829041 Msa0367870:exon
TGAAACCTGGAGGAGTTGAA+GGG 0.578494 3_1:+63828824 Msa0367870:CDS
TGTCCAATTCCATGGAGGAA+AGG 0.580959 3_1:-63827396 None:intergenic
TATCTTGAAGATGCAATCAC+TGG 0.588676 3_1:+63827979 Msa0367870:CDS
TGGTATTTCAGGAAAAGAAG+TGG 0.597344 3_1:+63828963 Msa0367870:CDS
CAAAGAAGTTGTGCATCTAG+AGG 0.598019 3_1:+63828605 Msa0367870:CDS
TTTGCAGCTGATACATCAAG+TGG 0.606270 3_1:+63827955 Msa0367870:CDS
CAAATTCAATCACTAGCTAG+GGG 0.627873 3_1:-63829347 None:intergenic
TTCCTGAAATACCATAACCA+CGG 0.632367 3_1:-63828954 None:intergenic
AAAGCCAATTCCACATCCTG+TGG 0.636787 3_1:+63828894 Msa0367870:CDS
CATCCATGTATTTCAAACCG+TGG 0.645090 3_1:+63828937 Msa0367870:CDS
ACGGTGACACACCATGATTG+TGG 0.648803 3_1:+63829169 Msa0367870:three_prime_UTR
GAAACCTGGAGGAGTTGAAG+GGG 0.660694 3_1:+63828825 Msa0367870:CDS
TTTGAGCTGGTGAAACCTGG+AGG 0.684329 3_1:+63828814 Msa0367870:CDS
AAATTCAATCACTAGCTAGG+GGG 0.691101 3_1:-63829346 None:intergenic
TCCAATGTCCAATTCCATGG+AGG 0.717943 3_1:-63827401 None:intergenic
CTTACTAGGATTCAAACTAG+GGG 0.738551 3_1:+63828991 Msa0367870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAAAACAAAATGTT+TGG + chr3_1:63828158-63828177 Msa0367870:intron 10.0%
!!! TGTAATTTTTACTAAAATTA+CGG + chr3_1:63829150-63829169 Msa0367870:three_prime_UTR 10.0%
!! TAATAAAAAAACAAAATGTT+TGG + chr3_1:63828158-63828177 Msa0367870:intron 10.0%
!!! TGTAATTTTTACTAAAATTA+CGG + chr3_1:63829150-63829169 Msa0367870:three_prime_UTR 10.0%
!!! CAATCATTTGAAAATAATTT+TGG + chr3_1:63828311-63828330 Msa0367870:intron 15.0%
!!! TAGGTTATTATTTCTAATTT+TGG + chr3_1:63828443-63828462 Msa0367870:intron 15.0%
!!! ATAATTTTAATGAAGTTTCA+CGG + chr3_1:63829127-63829146 Msa0367870:three_prime_UTR 15.0%
!!! CAATCATTTGAAAATAATTT+TGG + chr3_1:63828311-63828330 Msa0367870:intron 15.0%
!!! TAGGTTATTATTTCTAATTT+TGG + chr3_1:63828443-63828462 Msa0367870:intron 15.0%
!!! ATAATTTTAATGAAGTTTCA+CGG + chr3_1:63829127-63829146 Msa0367870:three_prime_UTR 15.0%
!! TAACCTAAAGTTAAAATGTT+AGG - chr3_1:63828430-63828449 None:intergenic 20.0%
!!! ATTATGTTTTGATGTAACTA+GGG + chr3_1:63828764-63828783 Msa0367870:intron 20.0%
!! GTGAAACTTCATTAAAATTA+TGG - chr3_1:63829128-63829147 None:intergenic 20.0%
!! TTGGTATAAACTATATATGA+AGG - chr3_1:63829255-63829274 None:intergenic 20.0%
!! ACATTACATTTATGCATATT+TGG - chr3_1:63829274-63829293 None:intergenic 20.0%
!! TAACCTAAAGTTAAAATGTT+AGG - chr3_1:63828430-63828449 None:intergenic 20.0%
!!! ATTATGTTTTGATGTAACTA+GGG + chr3_1:63828764-63828783 Msa0367870:intron 20.0%
!! GTGAAACTTCATTAAAATTA+TGG - chr3_1:63829128-63829147 None:intergenic 20.0%
!! TTGGTATAAACTATATATGA+AGG - chr3_1:63829255-63829274 None:intergenic 20.0%
!! ACATTACATTTATGCATATT+TGG - chr3_1:63829274-63829293 None:intergenic 20.0%
! TAATAAATCAGCAAGTGAAA+AGG - chr3_1:63827465-63827484 None:intergenic 25.0%
! TTCAATGTAATCACAAATGT+CGG - chr3_1:63827792-63827811 None:intergenic 25.0%
! ATACATACCTTGAAGTAATT+GGG - chr3_1:63828226-63828245 None:intergenic 25.0%
! TATACATACCTTGAAGTAAT+TGG - chr3_1:63828227-63828246 None:intergenic 25.0%
! CAATCATGTATTACTAGATT+TGG + chr3_1:63828283-63828302 Msa0367870:intron 25.0%
! ATGAAACAGAGAAGATAAAT+TGG - chr3_1:63828350-63828369 None:intergenic 25.0%
! CTAAAGTTAAAATGTTAGGT+TGG - chr3_1:63828426-63828445 None:intergenic 25.0%
!!! CAACCTAACATTTTAACTTT+AGG + chr3_1:63828424-63828443 Msa0367870:intron 25.0%
! ACCATAAAAAATTCAACACT+AGG + chr3_1:63828525-63828544 Msa0367870:CDS 25.0%
!!! TCCTAGTGTTGAATTTTTTA+TGG - chr3_1:63828529-63828548 None:intergenic 25.0%
! AGAAAAGAGAAATGAAATGA+TGG - chr3_1:63828705-63828724 None:intergenic 25.0%
! TCAAAACATAATGGTACAAA+AGG - chr3_1:63828756-63828775 None:intergenic 25.0%
! CTAGTTACATCAAAACATAA+TGG - chr3_1:63828765-63828784 None:intergenic 25.0%
!!! CATTATGTTTTGATGTAACT+AGG + chr3_1:63828763-63828782 Msa0367870:intron 25.0%
!!! TTATGTTTTGATGTAACTAG+GGG + chr3_1:63828765-63828784 Msa0367870:intron 25.0%
! TTTAGTCCTAATAATGGTAA+TGG - chr3_1:63829025-63829044 None:intergenic 25.0%
! ATTACCATTATTAGGACTAA+AGG + chr3_1:63829024-63829043 Msa0367870:CDS 25.0%
! TAAAGGTTGAATTAAAGTGA+AGG + chr3_1:63829041-63829060 Msa0367870:exon 25.0%
! ACTTAATTAGTGCATGTTTA+GGG + chr3_1:63829071-63829090 Msa0367870:three_prime_UTR 25.0%
! TAATAAATCAGCAAGTGAAA+AGG - chr3_1:63827465-63827484 None:intergenic 25.0%
! TTCAATGTAATCACAAATGT+CGG - chr3_1:63827792-63827811 None:intergenic 25.0%
! ATACATACCTTGAAGTAATT+GGG - chr3_1:63828226-63828245 None:intergenic 25.0%
! TATACATACCTTGAAGTAAT+TGG - chr3_1:63828227-63828246 None:intergenic 25.0%
! CAATCATGTATTACTAGATT+TGG + chr3_1:63828283-63828302 Msa0367870:intron 25.0%
! ATGAAACAGAGAAGATAAAT+TGG - chr3_1:63828350-63828369 None:intergenic 25.0%
! CTAAAGTTAAAATGTTAGGT+TGG - chr3_1:63828426-63828445 None:intergenic 25.0%
!!! CAACCTAACATTTTAACTTT+AGG + chr3_1:63828424-63828443 Msa0367870:intron 25.0%
! ACCATAAAAAATTCAACACT+AGG + chr3_1:63828525-63828544 Msa0367870:CDS 25.0%
!!! TCCTAGTGTTGAATTTTTTA+TGG - chr3_1:63828529-63828548 None:intergenic 25.0%
! AGAAAAGAGAAATGAAATGA+TGG - chr3_1:63828705-63828724 None:intergenic 25.0%
! TCAAAACATAATGGTACAAA+AGG - chr3_1:63828756-63828775 None:intergenic 25.0%
! CTAGTTACATCAAAACATAA+TGG - chr3_1:63828765-63828784 None:intergenic 25.0%
!!! CATTATGTTTTGATGTAACT+AGG + chr3_1:63828763-63828782 Msa0367870:intron 25.0%
!!! TTATGTTTTGATGTAACTAG+GGG + chr3_1:63828765-63828784 Msa0367870:intron 25.0%
! TTTAGTCCTAATAATGGTAA+TGG - chr3_1:63829025-63829044 None:intergenic 25.0%
! ATTACCATTATTAGGACTAA+AGG + chr3_1:63829024-63829043 Msa0367870:CDS 25.0%
! TAAAGGTTGAATTAAAGTGA+AGG + chr3_1:63829041-63829060 Msa0367870:exon 25.0%
! ACTTAATTAGTGCATGTTTA+GGG + chr3_1:63829071-63829090 Msa0367870:three_prime_UTR 25.0%
ACTCATTCAGATTTAACTCT+TGG + chr3_1:63827427-63827446 Msa0367870:CDS 30.0%
GTCATCTAGTAGTATATTCT+TGG - chr3_1:63827540-63827559 None:intergenic 30.0%
ATATACTACTAGATGACACT+TGG + chr3_1:63827543-63827562 Msa0367870:intron 30.0%
CAAGTAGAATAAGATCATAG+TGG - chr3_1:63827571-63827590 None:intergenic 30.0%
ATTCTACTTGTTTGTGATCT+TGG + chr3_1:63827581-63827600 Msa0367870:intron 30.0%
GAAGAAAATGTTGGAAATAG+AGG - chr3_1:63828195-63828214 None:intergenic 30.0%
TGTATATATATACACCCTTG+TGG + chr3_1:63828241-63828260 Msa0367870:intron 30.0%
GATTCAGCAGCTATATAATA+AGG + chr3_1:63828377-63828396 Msa0367870:intron 30.0%
!!! TATGTTTTGATGTAACTAGG+GGG + chr3_1:63828766-63828785 Msa0367870:intron 30.0%
ACTTACTAGGATTCAAACTA+GGG + chr3_1:63828990-63829009 Msa0367870:CDS 30.0%
TCAACCTTTAGTCCTAATAA+TGG - chr3_1:63829031-63829050 None:intergenic 30.0%
CACTTAATTAGTGCATGTTT+AGG + chr3_1:63829070-63829089 Msa0367870:three_prime_UTR 30.0%
! GAGTTAGTTTCACGAAATTA+CGG + chr3_1:63829097-63829116 Msa0367870:three_prime_UTR 30.0%
TCAAATTCAATCACTAGCTA+GGG - chr3_1:63829351-63829370 None:intergenic 30.0%
TTCAAATTCAATCACTAGCT+AGG - chr3_1:63829352-63829371 None:intergenic 30.0%
ACTCATTCAGATTTAACTCT+TGG + chr3_1:63827427-63827446 Msa0367870:CDS 30.0%
GTCATCTAGTAGTATATTCT+TGG - chr3_1:63827540-63827559 None:intergenic 30.0%
ATATACTACTAGATGACACT+TGG + chr3_1:63827543-63827562 Msa0367870:intron 30.0%
CAAGTAGAATAAGATCATAG+TGG - chr3_1:63827571-63827590 None:intergenic 30.0%
ATTCTACTTGTTTGTGATCT+TGG + chr3_1:63827581-63827600 Msa0367870:intron 30.0%
GAAGAAAATGTTGGAAATAG+AGG - chr3_1:63828195-63828214 None:intergenic 30.0%
TGTATATATATACACCCTTG+TGG + chr3_1:63828241-63828260 Msa0367870:intron 30.0%
GATTCAGCAGCTATATAATA+AGG + chr3_1:63828377-63828396 Msa0367870:intron 30.0%
!!! TATGTTTTGATGTAACTAGG+GGG + chr3_1:63828766-63828785 Msa0367870:intron 30.0%
ACTTACTAGGATTCAAACTA+GGG + chr3_1:63828990-63829009 Msa0367870:CDS 30.0%
TCAACCTTTAGTCCTAATAA+TGG - chr3_1:63829031-63829050 None:intergenic 30.0%
CACTTAATTAGTGCATGTTT+AGG + chr3_1:63829070-63829089 Msa0367870:three_prime_UTR 30.0%
! GAGTTAGTTTCACGAAATTA+CGG + chr3_1:63829097-63829116 Msa0367870:three_prime_UTR 30.0%
TCAAATTCAATCACTAGCTA+GGG - chr3_1:63829351-63829370 None:intergenic 30.0%
TTCAAATTCAATCACTAGCT+AGG - chr3_1:63829352-63829371 None:intergenic 30.0%
! GTGACTTTTCTCAATCATGA+TGG - chr3_1:63827649-63827668 None:intergenic 35.0%
TTCTGAGTGAAGATGTGTTT+CGG + chr3_1:63827730-63827749 Msa0367870:intron 35.0%
!!! GTCTGCTTATTTTGTCTCTA+TGG + chr3_1:63827910-63827929 Msa0367870:intron 35.0%
TATCTTGAAGATGCAATCAC+TGG + chr3_1:63827979-63827998 Msa0367870:CDS 35.0%
! TTTTGATCTTGAGAGTAGGT+TGG - chr3_1:63828036-63828055 None:intergenic 35.0%
AACCTACTCTCAAGATCAAA+AGG + chr3_1:63828035-63828054 Msa0367870:CDS 35.0%
! AACCTTTTGATCTTGAGAGT+AGG - chr3_1:63828040-63828059 None:intergenic 35.0%
GGTTAACTAACAACTATGCA+TGG + chr3_1:63828056-63828075 Msa0367870:intron 35.0%
AACAAAATGTTTGGTTGAGC+AGG + chr3_1:63828167-63828186 Msa0367870:intron 35.0%
! AAAGTAATTTGCAGTGTCAG+TGG - chr3_1:63828498-63828517 None:intergenic 35.0%
AATAGCTTATCCATTTGAGC+TGG + chr3_1:63828801-63828820 Msa0367870:CDS 35.0%
ATGGACTCATCATCATTTGA+TGG - chr3_1:63828873-63828892 None:intergenic 35.0%
! TAACCACGGTTTGAAATACA+TGG - chr3_1:63828943-63828962 None:intergenic 35.0%
TGTATTTCAAACCGTGGTTA+TGG + chr3_1:63828943-63828962 Msa0367870:CDS 35.0%
TTCCTGAAATACCATAACCA+CGG - chr3_1:63828957-63828976 None:intergenic 35.0%
TGGTATTTCAGGAAAAGAAG+TGG + chr3_1:63828963-63828982 Msa0367870:CDS 35.0%
CACTTACTAGGATTCAAACT+AGG + chr3_1:63828989-63829008 Msa0367870:CDS 35.0%
CTTACTAGGATTCAAACTAG+GGG + chr3_1:63828991-63829010 Msa0367870:CDS 35.0%
AAATTCAATCACTAGCTAGG+GGG - chr3_1:63829349-63829368 None:intergenic 35.0%
CAAATTCAATCACTAGCTAG+GGG - chr3_1:63829350-63829369 None:intergenic 35.0%
! GTGACTTTTCTCAATCATGA+TGG - chr3_1:63827649-63827668 None:intergenic 35.0%
TTCTGAGTGAAGATGTGTTT+CGG + chr3_1:63827730-63827749 Msa0367870:intron 35.0%
!!! GTCTGCTTATTTTGTCTCTA+TGG + chr3_1:63827910-63827929 Msa0367870:intron 35.0%
TATCTTGAAGATGCAATCAC+TGG + chr3_1:63827979-63827998 Msa0367870:CDS 35.0%
! TTTTGATCTTGAGAGTAGGT+TGG - chr3_1:63828036-63828055 None:intergenic 35.0%
AACCTACTCTCAAGATCAAA+AGG + chr3_1:63828035-63828054 Msa0367870:CDS 35.0%
! AACCTTTTGATCTTGAGAGT+AGG - chr3_1:63828040-63828059 None:intergenic 35.0%
GGTTAACTAACAACTATGCA+TGG + chr3_1:63828056-63828075 Msa0367870:intron 35.0%
AACAAAATGTTTGGTTGAGC+AGG + chr3_1:63828167-63828186 Msa0367870:intron 35.0%
! AAAGTAATTTGCAGTGTCAG+TGG - chr3_1:63828498-63828517 None:intergenic 35.0%
AATAGCTTATCCATTTGAGC+TGG + chr3_1:63828801-63828820 Msa0367870:CDS 35.0%
ATGGACTCATCATCATTTGA+TGG - chr3_1:63828873-63828892 None:intergenic 35.0%
! TAACCACGGTTTGAAATACA+TGG - chr3_1:63828943-63828962 None:intergenic 35.0%
TGTATTTCAAACCGTGGTTA+TGG + chr3_1:63828943-63828962 Msa0367870:CDS 35.0%
TTCCTGAAATACCATAACCA+CGG - chr3_1:63828957-63828976 None:intergenic 35.0%
TGGTATTTCAGGAAAAGAAG+TGG + chr3_1:63828963-63828982 Msa0367870:CDS 35.0%
CACTTACTAGGATTCAAACT+AGG + chr3_1:63828989-63829008 Msa0367870:CDS 35.0%
CTTACTAGGATTCAAACTAG+GGG + chr3_1:63828991-63829010 Msa0367870:CDS 35.0%
AAATTCAATCACTAGCTAGG+GGG - chr3_1:63829349-63829368 None:intergenic 35.0%
CAAATTCAATCACTAGCTAG+GGG - chr3_1:63829350-63829369 None:intergenic 35.0%
TTTCACTTTCCTTTCCTCCA+TGG + chr3_1:63827387-63827406 Msa0367870:exon 40.0%
TTTCCTTTCCTCCATGGAAT+TGG + chr3_1:63827393-63827412 Msa0367870:exon 40.0%
GATTCCAATGTCCAATTCCA+TGG - chr3_1:63827407-63827426 None:intergenic 40.0%
TCACACTTTGAACCTTCTGA+CGG + chr3_1:63827665-63827684 Msa0367870:intron 40.0%
ACTCAGAAATGTCTGCAACA+AGG - chr3_1:63827718-63827737 None:intergenic 40.0%
TTTGCAGCTGATACATCAAG+TGG + chr3_1:63827955-63827974 Msa0367870:CDS 40.0%
!! GCTGCTTTGGAAGAAAATGT+TGG - chr3_1:63828204-63828223 None:intergenic 40.0%
TTGAAGTAATTGGGCTGCTT+TGG - chr3_1:63828217-63828236 None:intergenic 40.0%
AAAGCAGCCCAATTACTTCA+AGG + chr3_1:63828216-63828235 Msa0367870:CDS 40.0%
ATATACACCCTTGTGGAATG+TGG + chr3_1:63828248-63828267 Msa0367870:intron 40.0%
CTAGATGCACAACTTCTTTG+AGG - chr3_1:63828605-63828624 None:intergenic 40.0%
CAAAGAAGTTGTGCATCTAG+AGG + chr3_1:63828605-63828624 Msa0367870:CDS 40.0%
ATAGAATCTTCTACAGCCAC+AGG - chr3_1:63828913-63828932 None:intergenic 40.0%
CATCCATGTATTTCAAACCG+TGG + chr3_1:63828937-63828956 Msa0367870:CDS 40.0%
AACCGTGGTTATGGTATTTC+AGG + chr3_1:63828952-63828971 Msa0367870:CDS 40.0%
GAGGCTCCATTACCATTATT+AGG + chr3_1:63829016-63829035 Msa0367870:CDS 40.0%
TTTCACTTTCCTTTCCTCCA+TGG + chr3_1:63827387-63827406 Msa0367870:exon 40.0%
TTTCCTTTCCTCCATGGAAT+TGG + chr3_1:63827393-63827412 Msa0367870:exon 40.0%
GATTCCAATGTCCAATTCCA+TGG - chr3_1:63827407-63827426 None:intergenic 40.0%
TCACACTTTGAACCTTCTGA+CGG + chr3_1:63827665-63827684 Msa0367870:intron 40.0%
ACTCAGAAATGTCTGCAACA+AGG - chr3_1:63827718-63827737 None:intergenic 40.0%
TTTGCAGCTGATACATCAAG+TGG + chr3_1:63827955-63827974 Msa0367870:CDS 40.0%
!! GCTGCTTTGGAAGAAAATGT+TGG - chr3_1:63828204-63828223 None:intergenic 40.0%
TTGAAGTAATTGGGCTGCTT+TGG - chr3_1:63828217-63828236 None:intergenic 40.0%
AAAGCAGCCCAATTACTTCA+AGG + chr3_1:63828216-63828235 Msa0367870:CDS 40.0%
ATATACACCCTTGTGGAATG+TGG + chr3_1:63828248-63828267 Msa0367870:intron 40.0%
CTAGATGCACAACTTCTTTG+AGG - chr3_1:63828605-63828624 None:intergenic 40.0%
CAAAGAAGTTGTGCATCTAG+AGG + chr3_1:63828605-63828624 Msa0367870:CDS 40.0%
ATAGAATCTTCTACAGCCAC+AGG - chr3_1:63828913-63828932 None:intergenic 40.0%
CATCCATGTATTTCAAACCG+TGG + chr3_1:63828937-63828956 Msa0367870:CDS 40.0%
AACCGTGGTTATGGTATTTC+AGG + chr3_1:63828952-63828971 Msa0367870:CDS 40.0%
GAGGCTCCATTACCATTATT+AGG + chr3_1:63829016-63829035 Msa0367870:CDS 40.0%
TGTCCAATTCCATGGAGGAA+AGG - chr3_1:63827399-63827418 None:intergenic 45.0%
TCCTCCATGGAATTGGACAT+TGG + chr3_1:63827400-63827419 Msa0367870:exon 45.0%
TCCAATGTCCAATTCCATGG+AGG - chr3_1:63827404-63827423 None:intergenic 45.0%
TCTGCAACAAGGACTGAGTT+TGG - chr3_1:63827707-63827726 None:intergenic 45.0%
CAGCAAACACAACACTGACA+CGG - chr3_1:63827857-63827876 None:intergenic 45.0%
GTCTCTATGAAGCACAGACA+CGG - chr3_1:63827881-63827900 None:intergenic 45.0%
TTGAAGATGCAATCACTGGC+TGG + chr3_1:63827983-63828002 Msa0367870:CDS 45.0%
! TGAAGATGCAATCACTGGCT+GGG + chr3_1:63827984-63828003 Msa0367870:CDS 45.0%
! CAATCACTGGCTGGGATATT+TGG + chr3_1:63827992-63828011 Msa0367870:CDS 45.0%
GATGCAACCACATTCCACAA+GGG - chr3_1:63828258-63828277 None:intergenic 45.0%
TGATGCAACCACATTCCACA+AGG - chr3_1:63828259-63828278 None:intergenic 45.0%
! GTAATTTGCAGTGTCAGTGG+TGG - chr3_1:63828495-63828514 None:intergenic 45.0%
TGAAACCTGGAGGAGTTGAA+GGG + chr3_1:63828824-63828843 Msa0367870:CDS 45.0%
!! GGATGTGGAATTGGCTTTGA+TGG - chr3_1:63828892-63828911 None:intergenic 45.0%
AAAGCCAATTCCACATCCTG+TGG + chr3_1:63828894-63828913 Msa0367870:CDS 45.0%
AAGAAGTGGCAGCACTTACT+AGG + chr3_1:63828977-63828996 Msa0367870:CDS 45.0%
AGGATTCAAACTAGGGGTAG+AGG + chr3_1:63828997-63829016 Msa0367870:CDS 45.0%
TGTCCAATTCCATGGAGGAA+AGG - chr3_1:63827399-63827418 None:intergenic 45.0%
TCCTCCATGGAATTGGACAT+TGG + chr3_1:63827400-63827419 Msa0367870:exon 45.0%
TCCAATGTCCAATTCCATGG+AGG - chr3_1:63827404-63827423 None:intergenic 45.0%
TCTGCAACAAGGACTGAGTT+TGG - chr3_1:63827707-63827726 None:intergenic 45.0%
CAGCAAACACAACACTGACA+CGG - chr3_1:63827857-63827876 None:intergenic 45.0%
GTCTCTATGAAGCACAGACA+CGG - chr3_1:63827881-63827900 None:intergenic 45.0%
TTGAAGATGCAATCACTGGC+TGG + chr3_1:63827983-63828002 Msa0367870:CDS 45.0%
! TGAAGATGCAATCACTGGCT+GGG + chr3_1:63827984-63828003 Msa0367870:CDS 45.0%
! CAATCACTGGCTGGGATATT+TGG + chr3_1:63827992-63828011 Msa0367870:CDS 45.0%
GATGCAACCACATTCCACAA+GGG - chr3_1:63828258-63828277 None:intergenic 45.0%
TGATGCAACCACATTCCACA+AGG - chr3_1:63828259-63828278 None:intergenic 45.0%
! GTAATTTGCAGTGTCAGTGG+TGG - chr3_1:63828495-63828514 None:intergenic 45.0%
TGAAACCTGGAGGAGTTGAA+GGG + chr3_1:63828824-63828843 Msa0367870:CDS 45.0%
!! GGATGTGGAATTGGCTTTGA+TGG - chr3_1:63828892-63828911 None:intergenic 45.0%
AAAGCCAATTCCACATCCTG+TGG + chr3_1:63828894-63828913 Msa0367870:CDS 45.0%
AAGAAGTGGCAGCACTTACT+AGG + chr3_1:63828977-63828996 Msa0367870:CDS 45.0%
AGGATTCAAACTAGGGGTAG+AGG + chr3_1:63828997-63829016 Msa0367870:CDS 45.0%
ATCACGACAACACCGTCAGA+AGG - chr3_1:63827680-63827699 None:intergenic 50.0%
GTGCTTCTACAGCTGAGTCT+TGG + chr3_1:63827932-63827951 Msa0367870:intron 50.0%
TGATGTAACTAGGGGGACAG+TGG + chr3_1:63828773-63828792 Msa0367870:intron 50.0%
CCAGGTTTCACCAGCTCAAA+TGG - chr3_1:63828814-63828833 None:intergenic 50.0%
CCATTTGAGCTGGTGAAACC+TGG + chr3_1:63828811-63828830 Msa0367870:CDS 50.0%
TTTGAGCTGGTGAAACCTGG+AGG + chr3_1:63828814-63828833 Msa0367870:CDS 50.0%
GTGAAACCTGGAGGAGTTGA+AGG + chr3_1:63828823-63828842 Msa0367870:CDS 50.0%
GAAACCTGGAGGAGTTGAAG+GGG + chr3_1:63828825-63828844 Msa0367870:CDS 50.0%
ACAGCCACAGGATGTGGAAT+TGG - chr3_1:63828901-63828920 None:intergenic 50.0%
TCTTCTACAGCCACAGGATG+TGG - chr3_1:63828907-63828926 None:intergenic 50.0%
ACGGTGACACACCATGATTG+TGG + chr3_1:63829169-63829188 Msa0367870:three_prime_UTR 50.0%
ATCACGACAACACCGTCAGA+AGG - chr3_1:63827680-63827699 None:intergenic 50.0%
GTGCTTCTACAGCTGAGTCT+TGG + chr3_1:63827932-63827951 Msa0367870:intron 50.0%
TGATGTAACTAGGGGGACAG+TGG + chr3_1:63828773-63828792 Msa0367870:intron 50.0%
CCAGGTTTCACCAGCTCAAA+TGG - chr3_1:63828814-63828833 None:intergenic 50.0%
CCATTTGAGCTGGTGAAACC+TGG + chr3_1:63828811-63828830 Msa0367870:CDS 50.0%
TTTGAGCTGGTGAAACCTGG+AGG + chr3_1:63828814-63828833 Msa0367870:CDS 50.0%
GTGAAACCTGGAGGAGTTGA+AGG + chr3_1:63828823-63828842 Msa0367870:CDS 50.0%
GAAACCTGGAGGAGTTGAAG+GGG + chr3_1:63828825-63828844 Msa0367870:CDS 50.0%
ACAGCCACAGGATGTGGAAT+TGG - chr3_1:63828901-63828920 None:intergenic 50.0%
TCTTCTACAGCCACAGGATG+TGG - chr3_1:63828907-63828926 None:intergenic 50.0%
ACGGTGACACACCATGATTG+TGG + chr3_1:63829169-63829188 Msa0367870:three_prime_UTR 50.0%
CTGACACGGACACGTTGACA+CGG - chr3_1:63827843-63827862 None:intergenic 55.0%
GTTTCCCCTTCAACTCCTCC+AGG - chr3_1:63828832-63828851 None:intergenic 55.0%
CCACGAGTTCGCCACAATCA+TGG - chr3_1:63829183-63829202 None:intergenic 55.0%
CCATGATTGTGGCGAACTCG+TGG + chr3_1:63829180-63829199 Msa0367870:three_prime_UTR 55.0%
CTGACACGGACACGTTGACA+CGG - chr3_1:63827843-63827862 None:intergenic 55.0%
GTTTCCCCTTCAACTCCTCC+AGG - chr3_1:63828832-63828851 None:intergenic 55.0%
CCACGAGTTCGCCACAATCA+TGG - chr3_1:63829183-63829202 None:intergenic 55.0%
CCATGATTGTGGCGAACTCG+TGG + chr3_1:63829180-63829199 Msa0367870:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63827363 63829375 63827363 ID=Msa0367870;Name=Msa0367870
chr3_1 mRNA 63827363 63829375 63827363 ID=Msa0367870-mRNA-1;Parent=Msa0367870;Name=Msa0367870-mRNA-1;_AED=0.20;_eAED=0.20;_QI=43|1|1|1|1|1|5|325|200
chr3_1 exon 63827363 63827448 63827363 ID=Msa0367870-mRNA-1:exon:12709;Parent=Msa0367870-mRNA-1
chr3_1 exon 63827944 63828056 63827944 ID=Msa0367870-mRNA-1:exon:12710;Parent=Msa0367870-mRNA-1
chr3_1 exon 63828189 63828237 63828189 ID=Msa0367870-mRNA-1:exon:12711;Parent=Msa0367870-mRNA-1
chr3_1 exon 63828525 63828656 63828525 ID=Msa0367870-mRNA-1:exon:12712;Parent=Msa0367870-mRNA-1
chr3_1 exon 63828785 63829375 63828785 ID=Msa0367870-mRNA-1:exon:12713;Parent=Msa0367870-mRNA-1
chr3_1 five_prime_UTR 63827363 63827405 63827363 ID=Msa0367870-mRNA-1:five_prime_utr;Parent=Msa0367870-mRNA-1
chr3_1 CDS 63827406 63827448 63827406 ID=Msa0367870-mRNA-1:cds;Parent=Msa0367870-mRNA-1
chr3_1 CDS 63827944 63828056 63827944 ID=Msa0367870-mRNA-1:cds;Parent=Msa0367870-mRNA-1
chr3_1 CDS 63828189 63828237 63828189 ID=Msa0367870-mRNA-1:cds;Parent=Msa0367870-mRNA-1
chr3_1 CDS 63828525 63828656 63828525 ID=Msa0367870-mRNA-1:cds;Parent=Msa0367870-mRNA-1
chr3_1 CDS 63828785 63829050 63828785 ID=Msa0367870-mRNA-1:cds;Parent=Msa0367870-mRNA-1
chr3_1 three_prime_UTR 63829051 63829375 63829051 ID=Msa0367870-mRNA-1:three_prime_utr;Parent=Msa0367870-mRNA-1
Gene Sequence

>Msa0367870

ATGGAATTGGACATTGGAATCACTCATTCAGATTTAACTCTTGCTGAGTCTTGGTTTGCAGCTGATACATCAAGTGGATATCTTGAAGATGCAATCACTGGCTGGGATATTTGGTGCAAGCAAAATAACTTACCAACCTACTCTCAAGATCAAAAGGAACCTCTATTTCCAACATTTTCTTCCAAAGCAGCCCAATTACTTCAAGACCATAAAAAATTCAACACTAGGAATCTATCATCATCACAAGATCATACACATTCAGCTGCAGTAAATCATGATTCACCTCAAAGAAGTTGTGCATCTAGAGGTTCAAATGAAAATGTTGCTTCTGTTTCAAGGGGACAGTGGAAGAAAATAGCTTATCCATTTGAGCTGGTGAAACCTGGAGGAGTTGAAGGGGAAACAACAATTAAAGATATAAACCATCAAATGATGATGAGTCCATCAAAGCCAATTCCACATCCTGTGGCTGTAGAAGATTCTATGACTCATCCATGTATTTCAAACCGTGGTTATGGTATTTCAGGAAAAGAAGTGGCAGCACTTACTAGGATTCAAACTAGGGGTAGAGGCTCCATTACCATTATTAGGACTAAAGGTTGA

Protein sequence

>Msa0367870

MELDIGITHSDLTLAESWFAADTSSGYLEDAITGWDIWCKQNNLPTYSQDQKEPLFPTFSSKAAQLLQDHKKFNTRNLSSSQDHTHSAAVNHDSPQRSCASRGSNENVASVSRGQWKKIAYPFELVKPGGVEGETTIKDINHQMMMSPSKPIPHPVAVEDSMTHPCISNRGYGISGKEVAALTRIQTRGRGSITIIRTKG*