Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040220 | sp|Q8GTE3|RS3A_CICAR | 91.571 | 261 | 22 | 0 | 1 | 261 | 1 | 261 | 8.87e-172 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0040220 | 0.830321 | 3.136758e-55 | -8.615850e-47 |
| Msa0003330 | Msa0040220 | 0.800680 | 1.286693e-48 | -8.615850e-47 |
| Msa0003360 | Msa0040220 | 0.810011 | 1.424912e-50 | -8.615850e-47 |
| Msa0016350 | Msa0040220 | 0.836871 | 7.258004e-57 | -8.615850e-47 |
| Msa0021290 | Msa0040220 | 0.871234 | 7.979613e-67 | -8.615850e-47 |
| Msa0021320 | Msa0040220 | 0.865965 | 4.026904e-65 | -8.615850e-47 |
| Msa0027590 | Msa0040220 | 0.846247 | 2.448960e-59 | -8.615850e-47 |
| Msa0036330 | Msa0040220 | 0.804003 | 2.660597e-49 | -8.615850e-47 |
| Msa0037480 | Msa0040220 | 0.806483 | 8.047316e-50 | -8.615850e-47 |
| Msa0040220 | Msa0050860 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa0040220 | Msa0070840 | 0.805729 | 1.159928e-49 | -8.615850e-47 |
| Msa0040220 | Msa0072570 | 0.837434 | 5.209102e-57 | -8.615850e-47 |
| Msa0040220 | Msa0075350 | 0.825862 | 3.717990e-54 | -8.615850e-47 |
| Msa0040220 | Msa0079590 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0040220 | Msa0084250 | 0.801168 | 1.022472e-48 | -8.615850e-47 |
| Msa0040220 | Msa0087910 | 0.951942 | 7.018527e-110 | -8.615850e-47 |
| Msa0040220 | Msa0094210 | 0.801615 | 8.280829e-49 | -8.615850e-47 |
| Msa0040220 | Msa0113920 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0040220 | Msa0114570 | 0.819458 | 1.149201e-52 | -8.615850e-47 |
| Msa0040220 | Msa0114600 | 0.814979 | 1.168846e-51 | -8.615850e-47 |
| Msa0040220 | Msa0128330 | 0.839880 | 1.215839e-57 | -8.615850e-47 |
| Msa0040220 | Msa0132460 | 0.869340 | 3.331677e-66 | -8.615850e-47 |
| Msa0040220 | Msa0134580 | 0.932695 | 5.789414e-95 | -8.615850e-47 |
| Msa0040220 | Msa0144810 | 0.832882 | 7.336958e-56 | -8.615850e-47 |
| Msa0040220 | Msa0146580 | 0.821681 | 3.547837e-53 | -8.615850e-47 |
| Msa0040220 | Msa0167860 | 0.826793 | 2.231934e-54 | -8.615850e-47 |
| Msa0040220 | Msa0172930 | 0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa0040220 | Msa0173250 | 0.859830 | 3.152504e-63 | -8.615850e-47 |
| Msa0040220 | Msa0174580 | 0.830798 | 2.396968e-55 | -8.615850e-47 |
| Msa0040220 | Msa0182050 | 0.872184 | 3.864588e-67 | -8.615850e-47 |
| Msa0040220 | Msa0182100 | 0.812457 | 4.199633e-51 | -8.615850e-47 |
| Msa0040220 | Msa0188740 | 0.840598 | 7.895679e-58 | -8.615850e-47 |
| Msa0040220 | Msa0191450 | 0.851296 | 9.734756e-61 | -8.615850e-47 |
| Msa0040220 | Msa0191550 | 0.855185 | 7.473944e-62 | -8.615850e-47 |
| Msa0040220 | Msa0192050 | 0.845055 | 5.154083e-59 | -8.615850e-47 |
| Msa0040220 | Msa0192300 | 0.852394 | 4.750979e-61 | -8.615850e-47 |
| Msa0040220 | Msa0194940 | 0.885507 | 7.664302e-72 | -8.615850e-47 |
| Msa0040220 | Msa0210330 | 0.811033 | 8.572317e-51 | -8.615850e-47 |
| Msa0040220 | Msa0210360 | 0.842074 | 3.228159e-58 | -8.615850e-47 |
| Msa0040220 | Msa0222730 | 0.850320 | 1.832778e-60 | -8.615850e-47 |
| Msa0040220 | Msa0223440 | 0.803530 | 3.336605e-49 | -8.615850e-47 |
| Msa0040220 | Msa0228540 | 0.866697 | 2.359689e-65 | -8.615850e-47 |
| Msa0040220 | Msa0264640 | 0.813813 | 2.116399e-51 | -8.615850e-47 |
| Msa0040220 | Msa0265250 | 0.802750 | 4.837189e-49 | -8.615850e-47 |
| Msa0040220 | Msa0270160 | 0.830918 | 2.240388e-55 | -8.615850e-47 |
| Msa0040220 | Msa0277600 | 0.836460 | 9.240396e-57 | -8.615850e-47 |
| Msa0040220 | Msa0281370 | 0.810196 | 1.299857e-50 | -8.615850e-47 |
| Msa0040220 | Msa0297830 | 0.831886 | 1.294140e-55 | -8.615850e-47 |
| Msa0040220 | Msa0301220 | 0.870477 | 1.416380e-66 | -8.615850e-47 |
| Msa0040220 | Msa0301250 | 0.850341 | 1.807604e-60 | -8.615850e-47 |
| Msa0040220 | Msa0304250 | 0.811411 | 7.096551e-51 | -8.615850e-47 |
| Msa0040220 | Msa0313060 | 0.861807 | 7.911605e-64 | -8.615850e-47 |
| Msa0040220 | Msa0313520 | 0.803906 | 2.787000e-49 | -8.615850e-47 |
| Msa0040220 | Msa0315430 | 0.879042 | 1.720893e-69 | -8.615850e-47 |
| Msa0040220 | Msa0335840 | 0.844751 | 6.228522e-59 | -8.615850e-47 |
| Msa0040220 | Msa0340560 | 0.834324 | 3.201824e-56 | -8.615850e-47 |
| Msa0040220 | Msa0369410 | 0.870670 | 1.224304e-66 | -8.615850e-47 |
| Msa0040220 | Msa0371490 | 0.809983 | 1.444623e-50 | -8.615850e-47 |
| Msa0040220 | Msa0377520 | 0.810784 | 9.702220e-51 | -8.615850e-47 |
| Msa0040220 | Msa0385030 | 0.822332 | 2.506680e-53 | -8.615850e-47 |
| Msa0040220 | Msa0388250 | 0.804474 | 2.122802e-49 | -8.615850e-47 |
| Msa0040220 | Msa0426090 | 0.910489 | 1.769095e-82 | -8.615850e-47 |
| Msa0040220 | Msa0426250 | 0.915902 | 3.385451e-85 | -8.615850e-47 |
| Msa0040220 | Msa0430130 | 0.801546 | 8.556126e-49 | -8.615850e-47 |
| Msa0040220 | Msa0432750 | 0.842140 | 3.101903e-58 | -8.615850e-47 |
| Msa0040220 | Msa0438960 | 0.804703 | 1.901812e-49 | -8.615850e-47 |
| Msa0040220 | Msa0450150 | 0.800517 | 1.388680e-48 | -8.615850e-47 |
| Msa0040220 | Msa0463520 | 0.835936 | 1.255467e-56 | -8.615850e-47 |
| Msa0040220 | Msa0472480 | 0.905664 | 3.379282e-80 | -8.615850e-47 |
| Msa0040220 | Msa0475810 | 0.987613 | 6.777661e-171 | -8.615850e-47 |
| Msa0040220 | Msa0479980 | 0.835040 | 2.114625e-56 | -8.615850e-47 |
| Msa0040220 | Msa0481520 | 0.886659 | 2.821419e-72 | -8.615850e-47 |
| Msa0040220 | Msa0482260 | 0.816939 | 4.269374e-52 | -8.615850e-47 |
| Msa0040220 | Msa0482560 | 0.843295 | 1.530291e-58 | -8.615850e-47 |
| Msa0040220 | Msa0517480 | 0.811100 | 8.287338e-51 | -8.615850e-47 |
| Msa0040220 | Msa0518590 | 0.815065 | 1.118770e-51 | -8.615850e-47 |
| Msa0040220 | Msa0529900 | 0.880740 | 4.280831e-70 | -8.615850e-47 |
| Msa0040220 | Msa0540480 | 0.816472 | 5.434099e-52 | -8.615850e-47 |
| Msa0040220 | Msa0547920 | 0.872849 | 2.317937e-67 | -8.615850e-47 |
| Msa0040220 | Msa0557720 | 0.821385 | 4.152730e-53 | -8.615850e-47 |
| Msa0040220 | Msa0573550 | 0.884588 | 1.686284e-71 | -8.615850e-47 |
| Msa0040220 | Msa0582070 | 0.856866 | 2.406966e-62 | -8.615850e-47 |
| Msa0040220 | Msa0596370 | 0.809333 | 1.992584e-50 | -8.615850e-47 |
| Msa0040220 | Msa0597240 | 0.875450 | 3.052828e-68 | -8.615850e-47 |
| Msa0040220 | Msa0602900 | 0.859246 | 4.724303e-63 | -8.615850e-47 |
| Msa0040220 | Msa0605890 | 0.822943 | 1.807246e-53 | -8.615850e-47 |
| Msa0040220 | Msa0619230 | 0.858421 | 8.336684e-63 | -8.615850e-47 |
| Msa0040220 | Msa0622230 | 0.838562 | 2.672140e-57 | -8.615850e-47 |
| Msa0040220 | Msa0629280 | 0.839232 | 1.792070e-57 | -8.615850e-47 |
| Msa0040220 | Msa0643960 | 0.861733 | 8.336719e-64 | -8.615850e-47 |
| Msa0040220 | Msa0648620 | 0.813230 | 2.843405e-51 | -8.615850e-47 |
| Msa0040220 | Msa0648670 | 0.817195 | 3.740364e-52 | -8.615850e-47 |
| Msa0040220 | Msa0653060 | 0.925143 | 2.734181e-90 | -8.615850e-47 |
| Msa0040220 | Msa0656320 | 0.801786 | 7.640737e-49 | -8.615850e-47 |
| Msa0040220 | Msa0694400 | 0.872990 | 2.078978e-67 | -8.615850e-47 |
| Msa0040220 | Msa0704860 | 0.823899 | 1.080340e-53 | -8.615850e-47 |
| Msa0040220 | Msa0705800 | 0.806289 | 8.841772e-50 | -8.615850e-47 |
| Msa0040220 | Msa0708630 | 0.869675 | 2.591774e-66 | -8.615850e-47 |
| Msa0040220 | Msa0717380 | 0.829538 | 4.868687e-55 | -8.615850e-47 |
| Msa0040220 | Msa0718560 | 0.806057 | 9.893097e-50 | -8.615850e-47 |
| Msa0040220 | Msa0748350 | 0.842082 | 3.213336e-58 | -8.615850e-47 |
| Msa0040220 | Msa0758420 | 0.819234 | 1.292655e-52 | -8.615850e-47 |
| Msa0040220 | Msa0788380 | 0.851990 | 6.191005e-61 | -8.615850e-47 |
| Msa0040220 | Msa0790450 | 0.863932 | 1.748485e-64 | -8.615850e-47 |
| Msa0040220 | Msa0799830 | 0.860135 | 2.551013e-63 | -8.615850e-47 |
| Msa0040220 | Msa0838070 | 0.833486 | 5.188142e-56 | -8.615850e-47 |
| Msa0040220 | Msa0839570 | 0.805569 | 1.253159e-49 | -8.615850e-47 |
| Msa0040220 | Msa0846900 | 0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0040220 | Msa0848240 | 0.818294 | 2.112613e-52 | -8.615850e-47 |
| Msa0040220 | Msa0861320 | 0.862607 | 4.495526e-64 | -8.615850e-47 |
| Msa0040220 | Msa0926310 | 0.807100 | 5.959961e-50 | -8.615850e-47 |
| Msa0040220 | Msa0929700 | 0.878732 | 2.213298e-69 | -8.615850e-47 |
| Msa0040220 | Msa0930100 | 0.849074 | 4.082629e-60 | -8.615850e-47 |
| Msa0040220 | Msa0930790 | 0.809495 | 1.840017e-50 | -8.615850e-47 |
| Msa0040220 | Msa1025200 | 0.862813 | 3.885032e-64 | -8.615850e-47 |
| Msa0040220 | Msa1025220 | 0.846295 | 2.376311e-59 | -8.615850e-47 |
| Msa0040220 | Msa1037290 | 0.828291 | 9.756762e-55 | -8.615850e-47 |
| Msa0040220 | Msa1040160 | 0.890262 | 1.154676e-73 | -8.615850e-47 |
| Msa0040220 | Msa1041680 | 0.855338 | 6.748485e-62 | -8.615850e-47 |
| Msa0040220 | Msa1047020 | 0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa0040220 | Msa1050100 | 0.879851 | 8.888961e-70 | -8.615850e-47 |
| Msa0040220 | Msa1054280 | 0.883695 | 3.607572e-71 | -8.615850e-47 |
| Msa0040220 | Msa1078870 | 0.805020 | 1.633182e-49 | -8.615850e-47 |
| Msa0040220 | Msa1078980 | 0.827373 | 1.622024e-54 | -8.615850e-47 |
| Msa0040220 | Msa1082170 | 0.827234 | 1.750868e-54 | -8.615850e-47 |
| Msa0040220 | Msa1083370 | 0.914532 | 1.716590e-84 | -8.615850e-47 |
| Msa0040220 | Msa1091290 | 0.833148 | 6.296978e-56 | -8.615850e-47 |
| Msa0040220 | Msa1096900 | 0.812885 | 3.384691e-51 | -8.615850e-47 |
| Msa0040220 | Msa1109310 | 0.836584 | 8.588159e-57 | -8.615850e-47 |
| Msa0040220 | Msa1116940 | 0.839185 | 1.842863e-57 | -8.615850e-47 |
| Msa0040220 | Msa1124850 | 0.849938 | 2.344281e-60 | -8.615850e-47 |
| Msa0040220 | Msa1126690 | 0.845742 | 3.359729e-59 | -8.615850e-47 |
| Msa0040220 | Msa1164150 | 0.831907 | 1.279399e-55 | -8.615850e-47 |
| Msa0040220 | Msa1165640 | 0.838827 | 2.281330e-57 | -8.615850e-47 |
| Msa0040220 | Msa1166570 | 0.858418 | 8.351108e-63 | -8.615850e-47 |
| Msa0040220 | Msa1166670 | 0.824924 | 6.200182e-54 | -8.615850e-47 |
| Msa0040220 | Msa1167540 | 0.848630 | 5.424129e-60 | -8.615850e-47 |
| Msa0040220 | Msa1169180 | 0.820485 | 6.692342e-53 | -8.615850e-47 |
| Msa0040220 | Msa1180000 | 0.843646 | 1.232876e-58 | -8.615850e-47 |
| Msa0040220 | Msa1186030 | 0.838972 | 2.092706e-57 | -8.615850e-47 |
| Msa0040220 | Msa1203560 | 0.884534 | 1.765966e-71 | -8.615850e-47 |
| Msa0040220 | Msa1206240 | 0.808602 | 2.857795e-50 | -8.615850e-47 |
| Msa0040220 | Msa1208330 | 0.805047 | 1.611533e-49 | -8.615850e-47 |
| Msa0040220 | Msa1218170 | 0.808060 | 3.728274e-50 | -8.615850e-47 |
| Msa0040220 | Msa1218610 | 0.855599 | 5.660573e-62 | -8.615850e-47 |
| Msa0040220 | Msa1227080 | 0.827306 | 1.682889e-54 | -8.615850e-47 |
| Msa0040220 | Msa1237040 | 0.884628 | 1.629634e-71 | -8.615850e-47 |
| Msa0040220 | Msa1240270 | 0.829451 | 5.111311e-55 | -8.615850e-47 |
| Msa0040220 | Msa1255830 | 0.861795 | 7.979284e-64 | -8.615850e-47 |
| Msa0040220 | Msa1255850 | 0.877868 | 4.449891e-69 | -8.615850e-47 |
| Msa0040220 | Msa1258460 | 0.867602 | 1.212530e-65 | -8.615850e-47 |
| Msa0040220 | Msa1258540 | 0.883891 | 3.056616e-71 | -8.615850e-47 |
| Msa0040220 | Msa1270640 | 0.831414 | 1.691988e-55 | -8.615850e-47 |
| Msa0040220 | Msa1270710 | 0.826873 | 2.136616e-54 | -8.615850e-47 |
| Msa0040220 | Msa1278130 | 0.888978 | 3.654311e-73 | -8.615850e-47 |
| Msa0040220 | Msa1284060 | 0.855068 | 8.083465e-62 | -8.615850e-47 |
| Msa0040220 | Msa1295150 | 0.806730 | 7.137472e-50 | -8.615850e-47 |
| Msa0040220 | Msa1296090 | 0.832364 | 9.861972e-56 | -8.615850e-47 |
| Msa0040220 | Msa1311400 | 0.859751 | 3.330855e-63 | -8.615850e-47 |
| Msa0040220 | Msa1317390 | 0.853928 | 1.727289e-61 | -8.615850e-47 |
| Msa0040220 | Msa1332250 | 0.804525 | 2.072072e-49 | -8.615850e-47 |
| Msa0040220 | Msa1333370 | 0.806173 | 9.352851e-50 | -8.615850e-47 |
| Msa0040220 | Msa1334560 | 0.802586 | 5.228468e-49 | -8.615850e-47 |
| Msa0040220 | Msa1341780 | 0.866555 | 2.616418e-65 | -8.615850e-47 |
| Msa0040220 | Msa1351020 | 0.819141 | 1.357376e-52 | -8.615850e-47 |
| Msa0040220 | Msa1351910 | 0.803945 | 2.735412e-49 | -8.615850e-47 |
| Msa0040220 | Msa1363910 | 0.829496 | 4.983270e-55 | -8.615850e-47 |
| Msa0040220 | Msa1364110 | 0.811957 | 5.398920e-51 | -8.615850e-47 |
| Msa0040220 | Msa1367540 | 0.800552 | 1.365886e-48 | -8.615850e-47 |
| Msa0040220 | Msa1368920 | 0.829247 | 5.728916e-55 | -8.615850e-47 |
| Msa0040220 | Msa1371410 | 0.841290 | 5.199120e-58 | -8.615850e-47 |
| Msa0040220 | Msa1385480 | 0.857253 | 1.851059e-62 | -8.615850e-47 |
| Msa0040220 | Msa1390760 | 0.856190 | 3.803297e-62 | -8.615850e-47 |
| Msa0040220 | Msa1392590 | 0.813245 | 2.821763e-51 | -8.615850e-47 |
| Msa0040220 | Msa1402010 | 0.843360 | 1.469937e-58 | -8.615850e-47 |
| Msa0040220 | Msa1410570 | 0.874402 | 6.946660e-68 | -8.615850e-47 |
| Msa0040220 | Msa1415620 | 0.841423 | 4.795057e-58 | -8.615850e-47 |
| Msa0040220 | Msa1424570 | 0.859098 | 5.230122e-63 | -8.615850e-47 |
| Msa0040220 | Msa1426120 | 0.816076 | 6.661346e-52 | -8.615850e-47 |
| Msa0040220 | Msa1432310 | 0.812978 | 3.229203e-51 | -8.615850e-47 |
| Msa0040220 | Msa1446410 | 0.803667 | 3.124845e-49 | -8.615850e-47 |
| Msa0040220 | Msa1449160 | 0.864611 | 1.073634e-64 | -8.615850e-47 |
| Msa0040220 | Msa1450560 | 0.871178 | 8.330962e-67 | -8.615850e-47 |
| Msa0040220 | Msa1463570 | 0.840465 | 8.557081e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040220 | MtrunA17_Chr1g0204941 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Msa0040220 | MtrunA17_Chr3g0081171 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 499 |
| Msa0040220 | MtrunA17_Chr5g0394611 | 94.253 | 261 | 15 | 0 | 1 | 261 | 1 | 261 | 1.91e-176 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040220 | AT3G04840.1 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 1.15e-163 | 454 |
| Msa0040220 | AT4G34670.1 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 2.43e-161 | 448 |
Find 108 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATAGTTTGTTCAAATT+TGG | 0.152753 | 1_1:+70303677 | Msa0040220:three_prime_UTR |
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 1_1:-70302702 | None:intergenic |
| ATTGGATTGGCCATGGGAGC+TGG | 0.245100 | 1_1:+70303448 | Msa0040220:three_prime_UTR |
| GATATCATACCAATCCTTCT+TGG | 0.295389 | 1_1:-70300969 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.319619 | 1_1:+70303142 | Msa0040220:intron |
| GTTTCTCACCCCAAGTCTTT+TGG | 0.335249 | 1_1:+70303534 | Msa0040220:three_prime_UTR |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 1_1:+70302706 | Msa0040220:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 1_1:+70300827 | Msa0040220:CDS |
| TTTATGTTACCGATGTTACT+TGG | 0.367972 | 1_1:-70300697 | None:intergenic |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 1_1:+70302717 | Msa0040220:CDS |
| GAAATTGTTGGAGCTTGATT+TGG | 0.369823 | 1_1:+70303235 | Msa0040220:exon |
| AAATCAGATATGCATGCTAT+TGG | 0.370591 | 1_1:+70303430 | Msa0040220:three_prime_UTR |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 1_1:+70302610 | Msa0040220:CDS |
| GAGCTGGGTGATTATTGATT+TGG | 0.385457 | 1_1:+70303464 | Msa0040220:three_prime_UTR |
| GGGACGAAGAACATGCATTC+AGG | 0.393353 | 1_1:+70301957 | Msa0040220:CDS |
| TTTAGGTTTCTGATGGATGT+AGG | 0.394357 | 1_1:-70300722 | None:intergenic |
| GACTAATAAACATAAATAAC+AGG | 0.405449 | 1_1:-70303287 | None:intergenic |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 1_1:+70301030 | Msa0040220:CDS |
| AAGTATACATTTAACCTCAT+TGG | 0.408595 | 1_1:+70303578 | Msa0040220:three_prime_UTR |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 1_1:-70300962 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 1_1:+70301922 | Msa0040220:CDS |
| GGCCATGGTTTCACTGTTTG+CGG | 0.414266 | 1_1:-70300799 | None:intergenic |
| AATTCATTCCCGAGATGATT+GGG | 0.425172 | 1_1:+70302611 | Msa0040220:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 1_1:+70301935 | Msa0040220:CDS |
| AGCATCATCTTGTGATTTGA+AGG | 0.436321 | 1_1:+70302576 | Msa0040220:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 1_1:+70300955 | Msa0040220:CDS |
| TCCGTCGCCATTTCATCAGC+AGG | 0.447536 | 1_1:-70303202 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 1_1:+70301913 | Msa0040220:CDS |
| CAAAACAAAACCGCTGCACT+TGG | 0.454851 | 1_1:-70303348 | None:intergenic |
| TACCAAGAGGAGAGCTAACC+AGG | 0.455144 | 1_1:+70302255 | Msa0040220:CDS |
| TTGGATTGGCCATGGGAGCT+GGG | 0.455985 | 1_1:+70303449 | Msa0040220:three_prime_UTR |
| GGATGAACACGTTCTGCAAT+GGG | 0.459558 | 1_1:-70302666 | None:intergenic |
| ATCTTGTGATTTGAAGGGAT+TGG | 0.459981 | 1_1:+70302582 | Msa0040220:CDS |
| AACATGCATTCAGGAAGATT+AGG | 0.462005 | 1_1:+70301966 | Msa0040220:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 1_1:+70300960 | Msa0040220:CDS |
| ATCTCTTTCCCAATCATCTC+GGG | 0.472425 | 1_1:-70302619 | None:intergenic |
| CGGATGAACACGTTCTGCAA+TGG | 0.478333 | 1_1:-70302667 | None:intergenic |
| CTGACTAGATTGTGCATAGC+AGG | 0.478379 | 1_1:-70302287 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.479682 | 1_1:+70303195 | Msa0040220:CDS |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 1_1:+70303223 | Msa0040220:CDS |
| GAAGGATTGGTATGATATCA+AGG | 0.488212 | 1_1:+70300973 | Msa0040220:CDS |
| GTCTCGTACTCAGGGTACTA+AGG | 0.497238 | 1_1:+70301039 | Msa0040220:CDS |
| TGGTCAGATCCGTAGGAAGA+TGG | 0.499805 | 1_1:+70302534 | Msa0040220:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 1_1:-70302257 | None:intergenic |
| TTAGGTTTCTGATGGATGTA+GGG | 0.503263 | 1_1:-70300721 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 1_1:+70302147 | Msa0040220:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 1_1:+70302158 | Msa0040220:CDS |
| TCAAATCACAAGATGATGCT+TGG | 0.512552 | 1_1:-70302573 | None:intergenic |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 1_1:+70300837 | Msa0040220:CDS |
| TCATCTCGGGAATGAATTTG+AGG | 0.518795 | 1_1:-70302606 | None:intergenic |
| CATAGCAGGTCCTCTTCACC+TGG | 0.518854 | 1_1:-70302273 | None:intergenic |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 1_1:+70300828 | Msa0040220:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 1_1:-70300814 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 1_1:+70301936 | Msa0040220:CDS |
| TATACATTTAACCTCATTGG+AGG | 0.528971 | 1_1:+70303581 | Msa0040220:three_prime_UTR |
| TTATGTTACCGATGTTACTT+GGG | 0.531693 | 1_1:-70300696 | None:intergenic |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 1_1:-70301009 | None:intergenic |
| CTTTATTTGGTCAGATCCGT+AGG | 0.534876 | 1_1:+70302527 | Msa0040220:intron |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 1_1:+70301989 | Msa0040220:CDS |
| ATGGGCACAACCAAAAGACT+TGG | 0.538736 | 1_1:-70303544 | None:intergenic |
| CAATAATCACCCAGCTCCCA+TGG | 0.543067 | 1_1:-70303458 | None:intergenic |
| GCATCATCTTGTGATTTGAA+GGG | 0.543515 | 1_1:+70302577 | Msa0040220:CDS |
| GATCTCTTTCCCAATCATCT+CGG | 0.545949 | 1_1:-70302620 | None:intergenic |
| AGATATGCATGCTATTGGAT+TGG | 0.548679 | 1_1:+70303435 | Msa0040220:three_prime_UTR |
| TGCTGATGAAATGGCGACGG+AGG | 0.555297 | 1_1:+70303204 | Msa0040220:CDS |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 1_1:+70302263 | Msa0040220:CDS |
| TGGGCACAACCAAAAGACTT+GGG | 0.557728 | 1_1:-70303543 | None:intergenic |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 1_1:+70301890 | Msa0040220:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 1_1:+70303171 | Msa0040220:CDS |
| CATCCATCAGAAACCTAAAA+CGG | 0.564666 | 1_1:+70300726 | Msa0040220:five_prime_UTR |
| GAAAATTCCTTCCTCCAATG+AGG | 0.566611 | 1_1:-70303592 | None:intergenic |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 1_1:-70300820 | None:intergenic |
| GCATGCTATTGGATTGGCCA+TGG | 0.572768 | 1_1:+70303441 | Msa0040220:three_prime_UTR |
| CATTTAACCTCATTGGAGGA+AGG | 0.575102 | 1_1:+70303585 | Msa0040220:three_prime_UTR |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 1_1:+70302297 | Msa0040220:CDS |
| CAAGCTCCAACAATTTCAGT+AGG | 0.582102 | 1_1:-70303229 | None:intergenic |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 1_1:+70303163 | Msa0040220:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 1_1:-70300998 | None:intergenic |
| GGGTGATTATTGATTTGGTG+TGG | 0.590317 | 1_1:+70303469 | Msa0040220:three_prime_UTR |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 1_1:-70302543 | None:intergenic |
| GCCTGCTGATGAAATGGCGA+CGG | 0.592955 | 1_1:+70303201 | Msa0040220:CDS |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 1_1:+70301937 | Msa0040220:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 1_1:-70302198 | None:intergenic |
| AACAGTGAAACCATGGCCGT+TGG | 0.599680 | 1_1:+70300804 | Msa0040220:exon |
| CATGCTATTGGATTGGCCAT+GGG | 0.601212 | 1_1:+70303442 | Msa0040220:three_prime_UTR |
| AACTCTTATTGAAGCCCATG+TGG | 0.605950 | 1_1:+70302183 | Msa0040220:CDS |
| GGCTCAGAGTACAGCAACAA+TGG | 0.609727 | 1_1:-70300751 | None:intergenic |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 1_1:+70302720 | Msa0040220:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 1_1:+70301990 | Msa0040220:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 1_1:+70301031 | Msa0040220:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 1_1:+70300840 | Msa0040220:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 1_1:+70300817 | Msa0040220:CDS |
| CGCCGCAAACAGTGAAACCA+TGG | 0.625701 | 1_1:+70300797 | Msa0040220:exon |
| CAATGGGTAAATACTAGACG+TGG | 0.627663 | 1_1:-70302650 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 1_1:+70302215 | Msa0040220:CDS |
| AAGAGTGAGAGAGCTTGTGA+CGG | 0.642297 | 1_1:-70300772 | None:intergenic |
| AGCACAAGCCCAAGTAACAT+CGG | 0.644854 | 1_1:+70300688 | Msa0040220:five_prime_UTR |
| TACCCTGAGTACGAGACACG+AGG | 0.648922 | 1_1:-70301033 | None:intergenic |
| TTTGCATTGGATTTACCAAG+AGG | 0.649561 | 1_1:+70302242 | Msa0040220:CDS |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 1_1:+70303179 | Msa0040220:CDS |
| ACTTGGCTTACATAGAACTC+AGG | 0.670546 | 1_1:-70303331 | None:intergenic |
| TCTATGTAAGCCAAGTGCAG+CGG | 0.672422 | 1_1:+70303338 | Msa0040220:three_prime_UTR |
| GGGCACAACCAAAAGACTTG+GGG | 0.672707 | 1_1:-70303542 | None:intergenic |
| ACCCTGAGTACGAGACACGA+GGG | 0.678904 | 1_1:-70301032 | None:intergenic |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 1_1:+70302140 | Msa0040220:CDS |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 1_1:-70302197 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 1_1:+70300829 | Msa0040220:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 1_1:+70303156 | Msa0040220:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAAAATTTAAA+AGG | - | chr1_1:70303031-70303050 | None:intergenic | 0.0% |
| !! | ATTGTAAAAAAATGAAAAAA+GGG | - | chr1_1:70300889-70300908 | None:intergenic | 10.0% |
| !! | AATTGTAAAAAAATGAAAAA+AGG | - | chr1_1:70300890-70300909 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTACAG+GGG | + | chr1_1:70302113-70302132 | Msa0040220:intron | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr1_1:70302789-70302808 | None:intergenic | 10.0% |
| !! | TTTAGTATAAAATTGTTTCA+TGG | - | chr1_1:70301675-70301694 | None:intergenic | 15.0% |
| !!! | AAAATCTTTTGACAAATTTT+TGG | + | chr1_1:70302014-70302033 | Msa0040220:CDS | 15.0% |
| !!! | AAATCTTTTGACAAATTTTT+GGG | + | chr1_1:70302015-70302034 | Msa0040220:CDS | 15.0% |
| !!! | AAATATATCTGAATTTTGTT+TGG | + | chr1_1:70303399-70303418 | Msa0040220:three_prime_UTR | 15.0% |
| !! | TTGTATTCATATTCAATTCT+TGG | + | chr1_1:70300921-70300940 | Msa0040220:intron | 20.0% |
| !! | GATACATTTCATTGAATATT+TGG | + | chr1_1:70301178-70301197 | Msa0040220:intron | 20.0% |
| !! | ATAAGCTATTTAAACAATCA+GGG | - | chr1_1:70301205-70301224 | None:intergenic | 20.0% |
| !! | TATAAGCTATTTAAACAATC+AGG | - | chr1_1:70301206-70301225 | None:intergenic | 20.0% |
| !! | TTATTTCCATAATAGCTTAT+AGG | - | chr1_1:70301327-70301346 | None:intergenic | 20.0% |
| !! | TTATACTAAATAACATATCG+TGG | + | chr1_1:70301685-70301704 | Msa0040220:intron | 20.0% |
| !! | TATACTAAATAACATATCGT+GGG | + | chr1_1:70301686-70301705 | Msa0040220:intron | 20.0% |
| !! | CTTAATGCTTATATAGAAAA+AGG | + | chr1_1:70301860-70301879 | Msa0040220:intron | 20.0% |
| !!! | AATAGCTTTTAATAATCTGA+AGG | - | chr1_1:70302939-70302958 | None:intergenic | 20.0% |
| !! | GACTAATAAACATAAATAAC+AGG | - | chr1_1:70303290-70303309 | None:intergenic | 20.0% |
| ! | TTACAAAAAACAAGACAAAG+CGG | - | chr1_1:70301074-70301093 | None:intergenic | 25.0% |
| !!! | GATTTGATTTGTACATTGTT+AGG | + | chr1_1:70301102-70301121 | Msa0040220:intron | 25.0% |
| !! | GTTTTTCCTATAAGCTATTA+TGG | + | chr1_1:70301318-70301337 | Msa0040220:intron | 25.0% |
| ! | AAAAAAATGTTGTCAACTAG+CGG | - | chr1_1:70301638-70301657 | None:intergenic | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | + | chr1_1:70301802-70301821 | Msa0040220:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | + | chr1_1:70301803-70301822 | Msa0040220:intron | 25.0% |
| !!! | AAATTTTTGGGTATGATATG+TGG | + | chr1_1:70302027-70302046 | Msa0040220:intron | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr1_1:70302055-70302074 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr1_1:70302059-70302078 | Msa0040220:intron | 25.0% |
| !!! | AATCACTTGTTTTGAACTTA+TGG | + | chr1_1:70302453-70302472 | Msa0040220:intron | 25.0% |
| ! | ACTAATGTAACACCTTTATT+TGG | + | chr1_1:70302514-70302533 | Msa0040220:intron | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr1_1:70302715-70302734 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr1_1:70302819-70302838 | Msa0040220:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr1_1:70302888-70302907 | None:intergenic | 25.0% |
| !!! | TAATAATCTGAAGGTGTTTA+TGG | - | chr1_1:70302930-70302949 | None:intergenic | 25.0% |
| !!! | AATCAATGACACTTTTTAGA+TGG | - | chr1_1:70303109-70303128 | None:intergenic | 25.0% |
| !!! | AAAGTGTCATTGATTTGATT+TGG | + | chr1_1:70303114-70303133 | Msa0040220:intron | 25.0% |
| !! | TATACTTTTCAGCAATGAAT+GGG | - | chr1_1:70303565-70303584 | None:intergenic | 25.0% |
| ! | AAGTATACATTTAACCTCAT+TGG | + | chr1_1:70303578-70303597 | Msa0040220:three_prime_UTR | 25.0% |
| !!! | GATCATAGTTTGTTCAAATT+TGG | + | chr1_1:70303677-70303696 | Msa0040220:three_prime_UTR | 25.0% |
| ! | TTATGTTACCGATGTTACTT+GGG | - | chr1_1:70300699-70300718 | None:intergenic | 30.0% |
| TTTATGTTACCGATGTTACT+TGG | - | chr1_1:70300700-70300719 | None:intergenic | 30.0% | |
| ! | TTGTACATTGTTAGGTTGTT+TGG | + | chr1_1:70301110-70301129 | Msa0040220:intron | 30.0% |
| GTTACTTATGTTCGAAGATA+AGG | + | chr1_1:70301442-70301461 | Msa0040220:intron | 30.0% | |
| AAAAAATGTTGTCAACTAGC+GGG | - | chr1_1:70301637-70301656 | None:intergenic | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | + | chr1_1:70301804-70301823 | Msa0040220:intron | 30.0% |
| CTACTGATAATTACACATTG+AGG | + | chr1_1:70302215-70302234 | Msa0040220:CDS | 30.0% | |
| CAGATATTAGTGATTCAACA+TGG | + | chr1_1:70302368-70302387 | Msa0040220:intron | 30.0% | |
| ! | TGGTATCCAACACATATTTT+AGG | + | chr1_1:70302388-70302407 | Msa0040220:intron | 30.0% |
| GTTCTACCTAAAATATGTGT+TGG | - | chr1_1:70302397-70302416 | None:intergenic | 30.0% | |
| AGCAGCATTTCATAAAAGAA+AGG | - | chr1_1:70302419-70302438 | None:intergenic | 30.0% | |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr1_1:70302690-70302709 | None:intergenic | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr1_1:70302716-70302735 | None:intergenic | 30.0% |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr1_1:70302717-70302736 | Msa0040220:CDS | 30.0% | |
| !! | GATTTGATTTGGTTGCTATT+TGG | + | chr1_1:70303125-70303144 | Msa0040220:intron | 30.0% |
| AAATCAGATATGCATGCTAT+TGG | + | chr1_1:70303430-70303449 | Msa0040220:three_prime_UTR | 30.0% | |
| ! | GTATACTTTTCAGCAATGAA+TGG | - | chr1_1:70303566-70303585 | None:intergenic | 30.0% |
| TATACATTTAACCTCATTGG+AGG | + | chr1_1:70303581-70303600 | Msa0040220:three_prime_UTR | 30.0% | |
| ! | GCTTGTGCTTTTCTTCTTTA+TGG | - | chr1_1:70300677-70300696 | None:intergenic | 35.0% |
| ! | TTAGGTTTCTGATGGATGTA+GGG | - | chr1_1:70300724-70300743 | None:intergenic | 35.0% |
| ! | TTTAGGTTTCTGATGGATGT+AGG | - | chr1_1:70300725-70300744 | None:intergenic | 35.0% |
| CATCCATCAGAAACCTAAAA+CGG | + | chr1_1:70300726-70300745 | Msa0040220:five_prime_UTR | 35.0% | |
| GATATCATACCAATCCTTCT+TGG | - | chr1_1:70300972-70300991 | None:intergenic | 35.0% | |
| ! | GAAGGATTGGTATGATATCA+AGG | + | chr1_1:70300973-70300992 | Msa0040220:CDS | 35.0% |
| ! | CATTGTTAGGTTGTTTGGTT+TGG | + | chr1_1:70301115-70301134 | Msa0040220:intron | 35.0% |
| TAAGCTGCAAAAACATCTCA+TGG | + | chr1_1:70301344-70301363 | Msa0040220:intron | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr1_1:70301465-70301484 | Msa0040220:intron | 35.0% | |
| TCTTGTAGTGCAGAAAATAG+CGG | + | chr1_1:70301567-70301586 | Msa0040220:intron | 35.0% | |
| ! | GATGCTGAAAGTTGATCAAT+TGG | + | chr1_1:70301826-70301845 | Msa0040220:intron | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr1_1:70301922-70301941 | Msa0040220:CDS | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr1_1:70301936-70301955 | Msa0040220:CDS | 35.0% |
| AACATGCATTCAGGAAGATT+AGG | + | chr1_1:70301966-70301985 | Msa0040220:CDS | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | + | chr1_1:70302140-70302159 | Msa0040220:CDS | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr1_1:70302229-70302248 | Msa0040220:CDS | 35.0% |
| TTTGCATTGGATTTACCAAG+AGG | + | chr1_1:70302242-70302261 | Msa0040220:CDS | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr1_1:70302297-70302316 | Msa0040220:CDS | 35.0% | |
| TCAAATCACAAGATGATGCT+TGG | - | chr1_1:70302576-70302595 | None:intergenic | 35.0% | |
| AGCATCATCTTGTGATTTGA+AGG | + | chr1_1:70302576-70302595 | Msa0040220:CDS | 35.0% | |
| GCATCATCTTGTGATTTGAA+GGG | + | chr1_1:70302577-70302596 | Msa0040220:CDS | 35.0% | |
| ATCTTGTGATTTGAAGGGAT+TGG | + | chr1_1:70302582-70302601 | Msa0040220:CDS | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | + | chr1_1:70302610-70302629 | Msa0040220:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr1_1:70302611-70302630 | Msa0040220:CDS | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr1_1:70302720-70302739 | Msa0040220:CDS | 35.0% | |
| ! | AACAACCAAAGTTTTTGTGC+AGG | - | chr1_1:70302815-70302834 | None:intergenic | 35.0% |
| CTTTCCAAAAGCTCTCTATT+CGG | + | chr1_1:70302899-70302918 | Msa0040220:intron | 35.0% | |
| TCAAGCTAAAAGAGAACAGA+AGG | - | chr1_1:70303055-70303074 | None:intergenic | 35.0% | |
| GAAATTGTTGGAGCTTGATT+TGG | + | chr1_1:70303235-70303254 | Msa0040220:exon | 35.0% | |
| AGATATGCATGCTATTGGAT+TGG | + | chr1_1:70303435-70303454 | Msa0040220:three_prime_UTR | 35.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr1_1:70300827-70300846 | Msa0040220:CDS | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr1_1:70300828-70300847 | Msa0040220:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr1_1:70300960-70300979 | Msa0040220:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr1_1:70300965-70300984 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr1_1:70301001-70301020 | None:intergenic | 40.0% | |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr1_1:70301004-70301023 | Msa0040220:CDS | 40.0% |
| CACTAAGTATACTCAGTCCA+AGG | - | chr1_1:70301492-70301511 | None:intergenic | 40.0% | |
| CTTGTAGTGCAGAAAATAGC+GGG | + | chr1_1:70301568-70301587 | Msa0040220:intron | 40.0% | |
| AACATATCGTGGGACAATAG+TGG | + | chr1_1:70301696-70301715 | Msa0040220:intron | 40.0% | |
| CGTGTTAAATAGCAGCTATG+CGG | - | chr1_1:70301758-70301777 | None:intergenic | 40.0% | |
| ! | ATAGCTGCTATTTAACACGC+TGG | + | chr1_1:70301759-70301778 | Msa0040220:intron | 40.0% |
| !!! | ACACGCTGGTTTTAGTTACA+AGG | + | chr1_1:70301773-70301792 | Msa0040220:intron | 40.0% |
| GAATGACAGATTGCTTCAGA+TGG | + | chr1_1:70301890-70301909 | Msa0040220:intron | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr1_1:70301913-70301932 | Msa0040220:CDS | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr1_1:70301935-70301954 | Msa0040220:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr1_1:70301937-70301956 | Msa0040220:CDS | 40.0% |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr1_1:70301989-70302008 | Msa0040220:CDS | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr1_1:70301990-70302009 | Msa0040220:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr1_1:70302147-70302166 | Msa0040220:CDS | 40.0% | |
| AACTCTTATTGAAGCCCATG+TGG | + | chr1_1:70302183-70302202 | Msa0040220:CDS | 40.0% | |
| ! | AGTAGTCTTGACATCCACAT+GGG | - | chr1_1:70302200-70302219 | None:intergenic | 40.0% |
| CTACGGATCTGACCAAATAA+AGG | - | chr1_1:70302529-70302548 | None:intergenic | 40.0% | |
| ! | CTTTATTTGGTCAGATCCGT+AGG | + | chr1_1:70302527-70302546 | Msa0040220:intron | 40.0% |
| TGATCTCAACCATCTTCCTA+CGG | - | chr1_1:70302546-70302565 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+AGG | - | chr1_1:70302609-70302628 | None:intergenic | 40.0% | |
| ATCTCTTTCCCAATCATCTC+GGG | - | chr1_1:70302622-70302641 | None:intergenic | 40.0% | |
| GATCTCTTTCCCAATCATCT+CGG | - | chr1_1:70302623-70302642 | None:intergenic | 40.0% | |
| CAATGGGTAAATACTAGACG+TGG | - | chr1_1:70302653-70302672 | None:intergenic | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr1_1:70302705-70302724 | None:intergenic | 40.0% | |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr1_1:70302706-70302725 | Msa0040220:CDS | 40.0% | |
| TCGTTCCTGCACAAAAACTT+TGG | + | chr1_1:70302807-70302826 | Msa0040220:intron | 40.0% | |
| ! | GAAACCGAATAGAGAGCTTT+TGG | - | chr1_1:70302906-70302925 | None:intergenic | 40.0% |
| ! | GTTTTCACACAAGCACTCAT+TGG | - | chr1_1:70302992-70303011 | None:intergenic | 40.0% |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr1_1:70303142-70303161 | Msa0040220:intron | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr1_1:70303152-70303171 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr1_1:70303223-70303242 | Msa0040220:CDS | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr1_1:70303232-70303251 | None:intergenic | 40.0% | |
| ACTTGGCTTACATAGAACTC+AGG | - | chr1_1:70303334-70303353 | None:intergenic | 40.0% | |
| ! | GAGCTGGGTGATTATTGATT+TGG | + | chr1_1:70303464-70303483 | Msa0040220:three_prime_UTR | 40.0% |
| !! | GGGTGATTATTGATTTGGTG+TGG | + | chr1_1:70303469-70303488 | Msa0040220:three_prime_UTR | 40.0% |
| CATTTAACCTCATTGGAGGA+AGG | + | chr1_1:70303585-70303604 | Msa0040220:three_prime_UTR | 40.0% | |
| GAAAATTCCTTCCTCCAATG+AGG | - | chr1_1:70303595-70303614 | None:intergenic | 40.0% | |
| AGCACAAGCCCAAGTAACAT+CGG | + | chr1_1:70300688-70300707 | Msa0040220:five_prime_UTR | 45.0% | |
| !!! | GCACCGTTTTAGGTTTCTGA+TGG | - | chr1_1:70300732-70300751 | None:intergenic | 45.0% |
| ! | AGCAACAATGGCACCGTTTT+AGG | - | chr1_1:70300742-70300761 | None:intergenic | 45.0% |
| AAGAGTGAGAGAGCTTGTGA+CGG | - | chr1_1:70300775-70300794 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr1_1:70300823-70300842 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr1_1:70300829-70300848 | Msa0040220:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr1_1:70300840-70300859 | Msa0040220:CDS | 45.0% |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr1_1:70300955-70300974 | Msa0040220:CDS | 45.0% | |
| ! | TTGTCAACTAGCGGGTAAAG+TGG | - | chr1_1:70301629-70301648 | None:intergenic | 45.0% |
| ! | CAGTAGTCTTGACATCCACA+TGG | - | chr1_1:70302201-70302220 | None:intergenic | 45.0% |
| CTGACTAGATTGTGCATAGC+AGG | - | chr1_1:70302290-70302309 | None:intergenic | 45.0% | |
| GGATGAACACGTTCTGCAAT+GGG | - | chr1_1:70302669-70302688 | None:intergenic | 45.0% | |
| !! | GGTTGCTATTTGGTCCTTGT+AGG | + | chr1_1:70303135-70303154 | Msa0040220:intron | 45.0% |
| GGTTCATGGAGATTACTCTG+AGG | + | chr1_1:70303156-70303175 | Msa0040220:intron | 45.0% | |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr1_1:70303163-70303182 | Msa0040220:CDS | 45.0% |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr1_1:70303179-70303198 | Msa0040220:CDS | 45.0% | |
| TCTATGTAAGCCAAGTGCAG+CGG | + | chr1_1:70303338-70303357 | Msa0040220:three_prime_UTR | 45.0% | |
| CAAAACAAAACCGCTGCACT+TGG | - | chr1_1:70303351-70303370 | None:intergenic | 45.0% | |
| !! | CATGCTATTGGATTGGCCAT+GGG | + | chr1_1:70303442-70303461 | Msa0040220:three_prime_UTR | 45.0% |
| ! | GTTTCTCACCCCAAGTCTTT+TGG | + | chr1_1:70303534-70303553 | Msa0040220:three_prime_UTR | 45.0% |
| TGGGCACAACCAAAAGACTT+GGG | - | chr1_1:70303546-70303565 | None:intergenic | 45.0% | |
| ATGGGCACAACCAAAAGACT+TGG | - | chr1_1:70303547-70303566 | None:intergenic | 45.0% | |
| !!! | TATTTTTATTTTTTATTTAC+AGG | + | chr1_1:70302111-70302130 | Msa0040220:intron | 5.0% |
| !!! | ATTTTTATTTTTTATTTACA+GGG | + | chr1_1:70302112-70302131 | Msa0040220:intron | 5.0% |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr1_1:70302788-70302807 | None:intergenic | 5.0% |
| GGCTCAGAGTACAGCAACAA+TGG | - | chr1_1:70300754-70300773 | None:intergenic | 50.0% | |
| GGCCATGGTTTCACTGTTTG+CGG | - | chr1_1:70300802-70300821 | None:intergenic | 50.0% | |
| AACAGTGAAACCATGGCCGT+TGG | + | chr1_1:70300804-70300823 | Msa0040220:exon | 50.0% | |
| CTTGTTCTTACCAACGGCCA+TGG | - | chr1_1:70300817-70300836 | None:intergenic | 50.0% | |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr1_1:70300817-70300836 | Msa0040220:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr1_1:70300837-70300856 | Msa0040220:CDS | 50.0% |
| ! | CAAGGCTCCTTCAGTTTTCC+AGG | + | chr1_1:70300991-70301010 | Msa0040220:CDS | 50.0% |
| TCTTGCCGACATTCTTCACC+TGG | - | chr1_1:70301012-70301031 | None:intergenic | 50.0% | |
| ! | GTCTCGTACTCAGGGTACTA+AGG | + | chr1_1:70301039-70301058 | Msa0040220:CDS | 50.0% |
| TGCCAATCCAAACAGGTCCT+TGG | + | chr1_1:70301472-70301491 | Msa0040220:intron | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | - | chr1_1:70301477-70301496 | None:intergenic | 50.0% | |
| ACTCAGTCCAAGGACCTGTT+TGG | - | chr1_1:70301482-70301501 | None:intergenic | 50.0% | |
| ATGCGGCGCTATATCGCTAT+CGG | - | chr1_1:70301741-70301760 | None:intergenic | 50.0% | |
| GGGACGAAGAACATGCATTC+AGG | + | chr1_1:70301957-70301976 | Msa0040220:CDS | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr1_1:70302158-70302177 | Msa0040220:CDS | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr1_1:70302255-70302274 | Msa0040220:CDS | 50.0% | |
| TGGTCAGATCCGTAGGAAGA+TGG | + | chr1_1:70302534-70302553 | Msa0040220:intron | 50.0% | |
| CGGATGAACACGTTCTGCAA+TGG | - | chr1_1:70302670-70302689 | None:intergenic | 50.0% | |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr1_1:70303171-70303190 | Msa0040220:CDS | 50.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr1_1:70303195-70303214 | Msa0040220:CDS | 50.0% | |
| !! | GCATGCTATTGGATTGGCCA+TGG | + | chr1_1:70303441-70303460 | Msa0040220:three_prime_UTR | 50.0% |
| CAATAATCACCCAGCTCCCA+TGG | - | chr1_1:70303461-70303480 | None:intergenic | 50.0% | |
| GGGCACAACCAAAAGACTTG+GGG | - | chr1_1:70303545-70303564 | None:intergenic | 50.0% | |
| CGCCGCAAACAGTGAAACCA+TGG | + | chr1_1:70300797-70300816 | Msa0040220:exon | 55.0% | |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr1_1:70301031-70301050 | Msa0040220:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr1_1:70301035-70301054 | None:intergenic | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr1_1:70301036-70301055 | None:intergenic | 55.0% | |
| TGCGGCGCTATATCGCTATC+GGG | - | chr1_1:70301740-70301759 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr1_1:70302260-70302279 | None:intergenic | 55.0% |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr1_1:70302263-70302282 | Msa0040220:CDS | 55.0% | |
| CATAGCAGGTCCTCTTCACC+TGG | - | chr1_1:70302276-70302295 | None:intergenic | 55.0% | |
| GCCTGCTGATGAAATGGCGA+CGG | + | chr1_1:70303201-70303220 | Msa0040220:CDS | 55.0% | |
| TCCGTCGCCATTTCATCAGC+AGG | - | chr1_1:70303205-70303224 | None:intergenic | 55.0% | |
| TGCTGATGAAATGGCGACGG+AGG | + | chr1_1:70303204-70303223 | Msa0040220:CDS | 55.0% | |
| !! | ATTGGATTGGCCATGGGAGC+TGG | + | chr1_1:70303448-70303467 | Msa0040220:three_prime_UTR | 55.0% |
| !! | TTGGATTGGCCATGGGAGCT+GGG | + | chr1_1:70303449-70303468 | Msa0040220:three_prime_UTR | 55.0% |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr1_1:70301030-70301049 | Msa0040220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70300654 | 70303712 | 70300654 | ID=Msa0040220;Name=Msa0040220 |
| chr1_1 | mRNA | 70300654 | 70303712 | 70300654 | ID=Msa0040220-mRNA-1;Parent=Msa0040220;Name=Msa0040220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=162|1|1|1|1|1|6|460|261 |
| chr1_1 | exon | 70300654 | 70300874 | 70300654 | ID=Msa0040220-mRNA-1:exon:23116;Parent=Msa0040220-mRNA-1 |
| chr1_1 | exon | 70300955 | 70301060 | 70300955 | ID=Msa0040220-mRNA-1:exon:23117;Parent=Msa0040220-mRNA-1 |
| chr1_1 | exon | 70301899 | 70302036 | 70301899 | ID=Msa0040220-mRNA-1:exon:23118;Parent=Msa0040220-mRNA-1 |
| chr1_1 | exon | 70302133 | 70302318 | 70302133 | ID=Msa0040220-mRNA-1:exon:23119;Parent=Msa0040220-mRNA-1 |
| chr1_1 | exon | 70302541 | 70302741 | 70302541 | ID=Msa0040220-mRNA-1:exon:23120;Parent=Msa0040220-mRNA-1 |
| chr1_1 | exon | 70303157 | 70303712 | 70303157 | ID=Msa0040220-mRNA-1:exon:23121;Parent=Msa0040220-mRNA-1 |
| chr1_1 | five_prime_UTR | 70300654 | 70300815 | 70300654 | ID=Msa0040220-mRNA-1:five_prime_utr;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70300816 | 70300874 | 70300816 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70300955 | 70301060 | 70300955 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70301899 | 70302036 | 70301899 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70302133 | 70302318 | 70302133 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70302541 | 70302741 | 70302541 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | CDS | 70303157 | 70303252 | 70303157 | ID=Msa0040220-mRNA-1:cds;Parent=Msa0040220-mRNA-1 |
| chr1_1 | three_prime_UTR | 70303253 | 70303712 | 70303253 | ID=Msa0040220-mRNA-1:three_prime_utr;Parent=Msa0040220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
