Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa0844480 | 0.809665 | 1.691057e-50 | -8.615850e-47 |
| Msa0844410 | Msa0844480 | 0.825813 | 3.820517e-54 | -8.615850e-47 |
| Msa0844420 | Msa0844480 | 0.851570 | 8.143360e-61 | -8.615850e-47 |
| Msa0844470 | Msa0844480 | 0.836299 | 1.015229e-56 | -8.615850e-47 |
| Msa0844480 | Msa0844490 | 0.851545 | 8.277625e-61 | -8.615850e-47 |
| Msa0844480 | Msa0844500 | 0.839883 | 1.214015e-57 | -8.615850e-47 |
| Msa0844480 | Msa0888420 | 0.801293 | 9.639476e-49 | -8.615850e-47 |
| Msa0844480 | Msa0914760 | 0.830468 | 2.888186e-55 | -8.615850e-47 |
| Msa0844480 | Msa0952720 | 0.815739 | 7.921334e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATTTCTAATACTTCTA+TGG | 0.267558 | 5_4:+22951067 | None:intergenic |
| ATACTTGCGTTGTCTGCAAC+TGG | 0.334679 | 5_4:-22954850 | None:intergenic |
| ATACTTGTGGTGTCTGCAAC+TGG | 0.336822 | 5_4:-22951153 | None:intergenic |
| CCTACTGGAAGAATGAATAA+AGG | 0.338328 | 5_4:+22954936 | Msa0844480:three_prime_UTR |
| TTTCTCCTTCGTCAGATTGA+AGG | 0.405158 | 5_4:+22951111 | Msa0844480:CDS |
| CTACTGGAAGAATGAATAAA+GGG | 0.426840 | 5_4:+22954937 | Msa0844480:three_prime_UTR |
| ATATGTAGCATCTTCCCTAC+TGG | 0.463866 | 5_4:+22954921 | Msa0844480:three_prime_UTR |
| ACTTGCGTTGTCTGCAACTG+GGG | 0.467405 | 5_4:-22954848 | None:intergenic |
| CCTTTATTCATTCTTCCAGT+AGG | 0.472273 | 5_4:-22954936 | Msa0844490:three_prime_UTR |
| TACTTGCGTTGTCTGCAACT+GGG | 0.474528 | 5_4:-22954849 | None:intergenic |
| ACTTGTGGTGTCTGCAACTG+GGG | 0.481177 | 5_4:-22951151 | None:intergenic |
| CTTTATTCATTCTTCCAGTA+GGG | 0.530856 | 5_4:-22954935 | Msa0844490:three_prime_UTR |
| TACTTGTGGTGTCTGCAACT+GGG | 0.534052 | 5_4:-22951152 | None:intergenic |
| AGAAACCTTCAATCTGACGA+AGG | 0.646918 | 5_4:-22951116 | None:intergenic |
| ACTTCTATGGACACATGTGA+AGG | 0.654384 | 5_4:+22951080 | Msa0844480:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATGATTAAAGTATTAA+TGG | - | chr5_4:22952117-22952136 | None:intergenic | 10.0% |
| !! | TTAATAATAATCAAACAAAT+TGG | - | chr5_4:22953375-22953394 | None:intergenic | 10.0% |
| !!! | TGATTATTATTAATTTTAAG+AGG | + | chr5_4:22953382-22953401 | Msa0844480:intron | 10.0% |
| !!! | AAATTGGATTTTTTTTTAAA+AGG | - | chr5_4:22953450-22953469 | None:intergenic | 10.0% |
| !!! | TAATTTCATGTTAATTTTGT+CGG | - | chr5_4:22951886-22951905 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTGTATTTTATTT+GGG | - | chr5_4:22952699-22952718 | None:intergenic | 15.0% |
| !!! | ATTTATTGATTTTTAGACTT+TGG | - | chr5_4:22952826-22952845 | None:intergenic | 15.0% |
| !! | AACTTAAATCTTAACTAATT+AGG | + | chr5_4:22953013-22953032 | Msa0844480:intron | 15.0% |
| !! | TAAAATATTGGATATAGATA+TGG | - | chr5_4:22953299-22953318 | None:intergenic | 15.0% |
| !! | TTTCGTCATAATTAAAATAT+TGG | - | chr5_4:22953311-22953330 | None:intergenic | 15.0% |
| !! | GAAAACTAAATCATAAAAAT+TGG | - | chr5_4:22953466-22953485 | None:intergenic | 15.0% |
| !! | AAAAACATGATAAAATGAAA+TGG | + | chr5_4:22953655-22953674 | Msa0844480:intron | 15.0% |
| !! | AAAACATGATAAAATGAAAT+GGG | + | chr5_4:22953656-22953675 | Msa0844480:intron | 15.0% |
| !!! | ATAAAGACATTTTTTTTTTG+AGG | + | chr5_4:22953768-22953787 | Msa0844480:intron | 15.0% |
| !! | AAGTTATATATAAATCCTTA+TGG | + | chr5_4:22953850-22953869 | Msa0844480:intron | 15.0% |
| !!! | TAAGATTTTTAATACTTCTA+TGG | + | chr5_4:22954764-22954783 | Msa0844480:intron | 15.0% |
| !! | AAAATGTTCAAGTAACAATA+TGG | + | chr5_4:22951477-22951496 | Msa0844480:intron | 20.0% |
| !! | AATCATTCTATTAACACATT+TGG | + | chr5_4:22951750-22951769 | Msa0844480:intron | 20.0% |
| !! | AAAAACCTAGTTTAATTAGA+AGG | - | chr5_4:22952414-22952433 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTAATTGTCATAA+TGG | + | chr5_4:22952425-22952444 | Msa0844480:intron | 20.0% |
| !!! | AGGTTTTTAATTGTCATAAT+GGG | + | chr5_4:22952426-22952445 | Msa0844480:intron | 20.0% |
| !!! | TTTTACTAAGAAGGTTATTT+TGG | - | chr5_4:22952586-22952605 | None:intergenic | 20.0% |
| !!! | TTTAGTCATTTTTAGAGTAA+GGG | - | chr5_4:22952647-22952666 | None:intergenic | 20.0% |
| !!! | TTTTAGTCATTTTTAGAGTA+AGG | - | chr5_4:22952648-22952667 | None:intergenic | 20.0% |
| !!! | GTCTTTTTGTGTATTTTATT+TGG | - | chr5_4:22952700-22952719 | None:intergenic | 20.0% |
| !! | AAAATAATTCTAGCGAAAAA+CGG | + | chr5_4:22952755-22952774 | Msa0844480:intron | 20.0% |
| !!! | AGACTTAAAAAGGATTTTTT+AGG | - | chr5_4:22953577-22953596 | None:intergenic | 20.0% |
| !! | AAAGATATTCTTCCAAATTA+AGG | - | chr5_4:22953708-22953727 | None:intergenic | 20.0% |
| !! | TTTGGAAGAATATCTTTAAA+AGG | + | chr5_4:22953711-22953730 | Msa0844480:intron | 20.0% |
| !!! | TTGGAAGAATATCTTTAAAA+GGG | + | chr5_4:22953712-22953731 | Msa0844480:intron | 20.0% |
| !! | TCATATTATTGAAACTTGAA+AGG | + | chr5_4:22953814-22953833 | Msa0844480:intron | 20.0% |
| !! | GGATTTATATATAACTTTGT+TGG | - | chr5_4:22953847-22953866 | None:intergenic | 20.0% |
| !!! | AATAAATTTGATGATGAAAG+GGG | - | chr5_4:22953908-22953927 | None:intergenic | 20.0% |
| !!! | GAATAAATTTGATGATGAAA+GGG | - | chr5_4:22953909-22953928 | None:intergenic | 20.0% |
| !!! | AGAATAAATTTGATGATGAA+AGG | - | chr5_4:22953910-22953929 | None:intergenic | 20.0% |
| !! | GAGAAATATTAGACTTTATT+TGG | - | chr5_4:22953950-22953969 | None:intergenic | 20.0% |
| !! | TCAGTAAAAAACTATCATAT+TGG | - | chr5_4:22954099-22954118 | None:intergenic | 20.0% |
| !! | GAAATCAATATAATAACCTT+TGG | - | chr5_4:22954650-22954669 | None:intergenic | 20.0% |
| ! | CTTTATTCATTCTTCTAGTA+GGG | - | chr5_4:22951241-22951260 | None:intergenic | 25.0% |
| ! | CTACTAGAAGAATGAATAAA+GGG | + | chr5_4:22951240-22951259 | Msa0844480:intron | 25.0% |
| !!! | TTAATATCCATCGATTTACA+CGG | + | chr5_4:22951599-22951618 | Msa0844480:intron | 25.0% |
| ! | TACAACCAACTATATCTTTA+AGG | - | chr5_4:22951675-22951694 | None:intergenic | 25.0% |
| ! | GTTATAGCTTAATTGATGAA+AGG | + | chr5_4:22952178-22952197 | Msa0844480:intron | 25.0% |
| ! | TTTCATTTCACAAACTTAAG+AGG | - | chr5_4:22952341-22952360 | None:intergenic | 25.0% |
| ! | ATGAATCTTATGAGAAAACT+AGG | - | chr5_4:22952379-22952398 | None:intergenic | 25.0% |
| !!! | GTAATTATTCAGTGTTTTAG+CGG | - | chr5_4:22952499-22952518 | None:intergenic | 25.0% |
| !!! | TTAGTCATTTTTAGAGTAAG+GGG | - | chr5_4:22952646-22952665 | None:intergenic | 25.0% |
| !!! | ATTTGGGAATAGTTGATTTT+TGG | - | chr5_4:22952683-22952702 | None:intergenic | 25.0% |
| ! | AAATAATTCTAGCGAAAAAC+GGG | + | chr5_4:22952756-22952775 | Msa0844480:intron | 25.0% |
| !!! | TATTGATTTTTAGACTTTGG+TGG | - | chr5_4:22952823-22952842 | None:intergenic | 25.0% |
| ! | TGGCATTATTCTCATTTATA+TGG | - | chr5_4:22953279-22953298 | None:intergenic | 25.0% |
| ! | TGACAATAACACTATATTTC+TGG | - | chr5_4:22953492-22953511 | None:intergenic | 25.0% |
| !! | TAGTGTTATTGTCATAAATC+TGG | + | chr5_4:22953498-22953517 | Msa0844480:intron | 25.0% |
| ! | TAGCATTGTAAAACCAAAAT+GGG | - | chr5_4:22953618-22953637 | None:intergenic | 25.0% |
| ! | ATAAAATGAAATGGGAGAAA+TGG | + | chr5_4:22953664-22953683 | Msa0844480:intron | 25.0% |
| !!! | ATGAAATAATACTCTAGAGT+CGG | + | chr5_4:22953739-22953758 | Msa0844480:intron | 25.0% |
| !!! | ATAAATTTGATGATGAAAGG+GGG | - | chr5_4:22953907-22953926 | None:intergenic | 25.0% |
| !! | TTAGACTTTATTTGGTAGTT+TGG | - | chr5_4:22953942-22953961 | None:intergenic | 25.0% |
| ! | TTGAACTAGATAAAAAATCC+TGG | - | chr5_4:22954354-22954373 | None:intergenic | 25.0% |
| ! | TCATCTCATAATGAACATAT+GGG | - | chr5_4:22954532-22954551 | None:intergenic | 25.0% |
| ! | TTCATCTCATAATGAACATA+TGG | - | chr5_4:22954533-22954552 | None:intergenic | 25.0% |
| ! | TTTTACGAGACAAATACTTG+TGG | - | chr5_4:22951169-22951188 | None:intergenic | 30.0% |
| CCTTTATTCATTCTTCTAGT+AGG | - | chr5_4:22951242-22951261 | None:intergenic | 30.0% | |
| CCTACTAGAAGAATGAATAA+AGG | + | chr5_4:22951239-22951258 | Msa0844480:intron | 30.0% | |
| ! | GGGTCTTGTAAAATATAGAA+AGG | + | chr5_4:22951260-22951279 | Msa0844480:intron | 30.0% |
| ATTGCTACATCTACAATGTT+GGG | + | chr5_4:22951377-22951396 | Msa0844480:intron | 30.0% | |
| TACGTTGTATATTTAGCTGT+AGG | - | chr5_4:22951454-22951473 | None:intergenic | 30.0% | |
| TTATTTATTTATGCTCCCAC+AGG | - | chr5_4:22951625-22951644 | None:intergenic | 30.0% | |
| TCAGTCCTTAAAGATATAGT+TGG | + | chr5_4:22951667-22951686 | Msa0844480:intron | 30.0% | |
| ! | TTTCATGTTAATTTTGTCGG+TGG | - | chr5_4:22951883-22951902 | None:intergenic | 30.0% |
| TTTCAAAAATCAAATGTCCC+CGG | + | chr5_4:22951919-22951938 | Msa0844480:intron | 30.0% | |
| ! | TCCTTTGATTTCTTGATTCT+TGG | + | chr5_4:22952016-22952035 | Msa0844480:intron | 30.0% |
| ACCAAGAATCAAGAAATCAA+AGG | - | chr5_4:22952020-22952039 | None:intergenic | 30.0% | |
| ! | GTTTTACTAAGACATGAACA+AGG | - | chr5_4:22952053-22952072 | None:intergenic | 30.0% |
| ATGGACTTTGATTAATTCCT+TGG | - | chr5_4:22952098-22952117 | None:intergenic | 30.0% | |
| CAATTAAGCTATAACTGTTG+AGG | - | chr5_4:22952173-22952192 | None:intergenic | 30.0% | |
| TACCACCTTCTAATTAAACT+AGG | + | chr5_4:22952406-22952425 | Msa0844480:intron | 30.0% | |
| AACCTAGTTTAATTAGAAGG+TGG | - | chr5_4:22952411-22952430 | None:intergenic | 30.0% | |
| TTGGGGAAATTATTTAGAGA+TGG | - | chr5_4:22952521-22952540 | None:intergenic | 30.0% | |
| TACTAAGTTACTAGTGAGTT+GGG | - | chr5_4:22952539-22952558 | None:intergenic | 30.0% | |
| TTACTAAGTTACTAGTGAGT+TGG | - | chr5_4:22952540-22952559 | None:intergenic | 30.0% | |
| !! | AATGAGTCGTTTTACTAAGA+AGG | - | chr5_4:22952595-22952614 | None:intergenic | 30.0% |
| !!! | AGTTGATTTTTGGCATACAA+GGG | - | chr5_4:22952673-22952692 | None:intergenic | 30.0% |
| !!! | TAGTTGATTTTTGGCATACA+AGG | - | chr5_4:22952674-22952693 | None:intergenic | 30.0% |
| !!! | CATGACAATGTTTTGACTTT+TGG | + | chr5_4:22952917-22952936 | Msa0844480:intron | 30.0% |
| GAGATAATCAAACTCAATGT+AGG | - | chr5_4:22952948-22952967 | None:intergenic | 30.0% | |
| ! | TGTGAGCTAAAGTTTTACAT+TGG | - | chr5_4:22953086-22953105 | None:intergenic | 30.0% |
| ACACATAAGTGTAAAATGTC+AGG | + | chr5_4:22953411-22953430 | Msa0844480:intron | 30.0% | |
| CACATAAGTGTAAAATGTCA+GGG | + | chr5_4:22953412-22953431 | Msa0844480:intron | 30.0% | |
| ACATAAGTGTAAAATGTCAG+GGG | + | chr5_4:22953413-22953432 | Msa0844480:intron | 30.0% | |
| TCATAACTCTATGGAACATA+AGG | + | chr5_4:22953546-22953565 | Msa0844480:intron | 30.0% | |
| GTAGCATTGTAAAACCAAAA+TGG | - | chr5_4:22953619-22953638 | None:intergenic | 30.0% | |
| ! | GAAGAATATCTTTAAAAGGG+AGG | + | chr5_4:22953715-22953734 | Msa0844480:intron | 30.0% |
| ! | ACTTTATTTGGTAGTTTGGA+GGG | - | chr5_4:22953938-22953957 | None:intergenic | 30.0% |
| CATTTCCAAATGAATGAGAT+GGG | + | chr5_4:22954132-22954151 | Msa0844480:intron | 30.0% | |
| TATTACCCATCTCATTCATT+TGG | - | chr5_4:22954140-22954159 | None:intergenic | 30.0% | |
| AATGAGATGGGTAATACAAT+CGG | + | chr5_4:22954144-22954163 | Msa0844480:intron | 30.0% | |
| CAATATGACAACTCTAGTAA+TGG | + | chr5_4:22954190-22954209 | Msa0844480:intron | 30.0% | |
| TGTGAAGTGATAAACGAATA+TGG | - | chr5_4:22954225-22954244 | None:intergenic | 30.0% | |
| AGATAATGTCAATTGTCCAA+GGG | - | chr5_4:22954330-22954349 | None:intergenic | 30.0% | |
| TAGATAATGTCAATTGTCCA+AGG | - | chr5_4:22954331-22954350 | None:intergenic | 30.0% | |
| CAATCATTAAGAGTCAATGA+AGG | - | chr5_4:22954442-22954461 | None:intergenic | 30.0% | |
| !! | TTTTGGTGGCTAAAACTATA+TGG | - | chr5_4:22954471-22954490 | None:intergenic | 30.0% |
| CTTTATTCATTCTTCCAGTA+GGG | - | chr5_4:22954938-22954957 | Msa0844490:three_prime_UTR | 30.0% | |
| CTACTGGAAGAATGAATAAA+GGG | + | chr5_4:22954937-22954956 | Msa0844480:three_prime_UTR | 30.0% | |
| CATTCTTCTAGTAGGGAATA+TGG | - | chr5_4:22951234-22951253 | None:intergenic | 35.0% | |
| GTAGGGTTTCGAAAAATTGT+TGG | - | chr5_4:22951312-22951331 | None:intergenic | 35.0% | |
| !! | GTGAACTTGCTATAATCGTA+GGG | - | chr5_4:22951329-22951348 | None:intergenic | 35.0% |
| CATTGCTACATCTACAATGT+TGG | + | chr5_4:22951376-22951395 | Msa0844480:intron | 35.0% | |
| AATGCATGTGTCGTCTATTA+CGG | - | chr5_4:22951419-22951438 | None:intergenic | 35.0% | |
| ! | ATCTTTAAGGACTGACAGAA+AGG | - | chr5_4:22951662-22951681 | None:intergenic | 35.0% |
| !! | TAGCTTGCTTCAATCTTCTT+TGG | - | chr5_4:22951703-22951722 | None:intergenic | 35.0% |
| ! | GTCTCTACTCTCTATTTTCA+AGG | - | chr5_4:22951839-22951858 | None:intergenic | 35.0% |
| ! | TTTTGTCGGTGGTCTAATTT+AGG | - | chr5_4:22951872-22951891 | None:intergenic | 35.0% |
| GTTAAACTATGATGAGTCAC+AGG | - | chr5_4:22951994-22952013 | None:intergenic | 35.0% | |
| AGAGCACAAGTTAAATACCA+AGG | + | chr5_4:22952078-22952097 | Msa0844480:intron | 35.0% | |
| ATTCAAAACCTAGAGGTAAG+GGG | - | chr5_4:22952212-22952231 | None:intergenic | 35.0% | |
| GATTCAAAACCTAGAGGTAA+GGG | - | chr5_4:22952213-22952232 | None:intergenic | 35.0% | |
| AGATCACAAACTTGGAGAAA+AGG | - | chr5_4:22952304-22952323 | None:intergenic | 35.0% | |
| GAGAAAGTAGATCACAAACT+TGG | - | chr5_4:22952312-22952331 | None:intergenic | 35.0% | |
| ACTAAGTTACTAGTGAGTTG+GGG | - | chr5_4:22952538-22952557 | None:intergenic | 35.0% | |
| !!! | TAAGGGGTATTTTCGTCATT+TGG | - | chr5_4:22952630-22952649 | None:intergenic | 35.0% |
| ! | ACTTTGGTGGCAAATGAAAA+TGG | - | chr5_4:22952810-22952829 | None:intergenic | 35.0% |
| CTTGAGTGAGAGATGTTAAT+GGG | - | chr5_4:22953114-22953133 | None:intergenic | 35.0% | |
| ACTTGAGTGAGAGATGTTAA+TGG | - | chr5_4:22953115-22953134 | None:intergenic | 35.0% | |
| ! | TCAGGTTTTTATACCATCGT+TGG | + | chr5_4:22953199-22953218 | Msa0844480:intron | 35.0% |
| TCTAATAGATTGATCCACAC+TGG | - | chr5_4:22953246-22953265 | None:intergenic | 35.0% | |
| ! | AGGCTTGGTTAGACTTAAAA+AGG | - | chr5_4:22953587-22953606 | None:intergenic | 35.0% |
| !! | AACCAAAATGGGTTATGTTG+AGG | - | chr5_4:22953607-22953626 | None:intergenic | 35.0% |
| AATGAAATGGGAGAAATGGT+TGG | + | chr5_4:22953668-22953687 | Msa0844480:intron | 35.0% | |
| GGAAAATGTGCACCTTAATT+TGG | + | chr5_4:22953693-22953712 | Msa0844480:intron | 35.0% | |
| ! | GACTTTATTTGGTAGTTTGG+AGG | - | chr5_4:22953939-22953958 | None:intergenic | 35.0% |
| GTCTGAGAACATGGAATTAA+AGG | - | chr5_4:22953974-22953993 | None:intergenic | 35.0% | |
| TCGTCTATGATATCTGTAGT+TGG | - | chr5_4:22953999-22954018 | None:intergenic | 35.0% | |
| GCATTTCCAAATGAATGAGA+TGG | + | chr5_4:22954131-22954150 | Msa0844480:intron | 35.0% | |
| ! | AACCTAAGTGTTGTCTACAT+TGG | + | chr5_4:22954273-22954292 | Msa0844480:intron | 35.0% |
| GACAATTGACATTATCTACC+AGG | + | chr5_4:22954333-22954352 | Msa0844480:intron | 35.0% | |
| ! | TGTCAAAAGGTATATTGCGA+GGG | - | chr5_4:22954575-22954594 | None:intergenic | 35.0% |
| !! | GTATGTAGGAAAGTGTCAAA+AGG | - | chr5_4:22954588-22954607 | None:intergenic | 35.0% |
| ACCAATCAATCTTAAGCCAA+AGG | + | chr5_4:22954631-22954650 | Msa0844480:intron | 35.0% | |
| ! | ACCTTTGGCTTAAGATTGAT+TGG | - | chr5_4:22954635-22954654 | None:intergenic | 35.0% |
| CCTTTATTCATTCTTCCAGT+AGG | - | chr5_4:22954939-22954958 | Msa0844490:three_prime_UTR | 35.0% | |
| CCTACTGGAAGAATGAATAA+AGG | + | chr5_4:22954936-22954955 | Msa0844480:three_prime_UTR | 35.0% | |
| ACTTCTATGGACACATGTGA+AGG | + | chr5_4:22951080-22951099 | Msa0844480:five_prime_UTR | 40.0% | |
| TTTCTCCTTCGTCAGATTGA+AGG | + | chr5_4:22951111-22951130 | Msa0844480:CDS | 40.0% | |
| AGAAACCTTCAATCTGACGA+AGG | - | chr5_4:22951119-22951138 | None:intergenic | 40.0% | |
| !! | CGTGAACTTGCTATAATCGT+AGG | - | chr5_4:22951330-22951349 | None:intergenic | 40.0% |
| ATGCATGTGTCGTCTATTAC+GGG | - | chr5_4:22951418-22951437 | None:intergenic | 40.0% | |
| GGTAGTCATCACTCTGAATT+TGG | - | chr5_4:22951945-22951964 | None:intergenic | 40.0% | |
| TTCAAAACCTAGAGGTAAGG+GGG | - | chr5_4:22952211-22952230 | None:intergenic | 40.0% | |
| GGATTCAAAACCTAGAGGTA+AGG | - | chr5_4:22952214-22952233 | None:intergenic | 40.0% | |
| !! | CTAGTGGATTCAAAACCTAG+AGG | - | chr5_4:22952219-22952238 | None:intergenic | 40.0% |
| GAGATTGAAGCTTAAGCTAG+TGG | - | chr5_4:22952235-22952254 | None:intergenic | 40.0% | |
| !! | GCTTGGGGTTTTAATAGCTA+GGG | - | chr5_4:22952259-22952278 | None:intergenic | 40.0% |
| !! | AGCTTGGGGTTTTAATAGCT+AGG | - | chr5_4:22952260-22952279 | None:intergenic | 40.0% |
| CTTGGAGAAAAGGAAAGAAG+AGG | - | chr5_4:22952294-22952313 | None:intergenic | 40.0% | |
| TTTCGTCATTTGGCGAGTAA+GGG | - | chr5_4:22952620-22952639 | None:intergenic | 40.0% | |
| ! | TTTTCGTCATTTGGCGAGTA+AGG | - | chr5_4:22952621-22952640 | None:intergenic | 40.0% |
| TTGTGTCAAACTCACTTGTG+TGG | - | chr5_4:22952987-22953006 | None:intergenic | 40.0% | |
| ACCATCGTTGGATCTTATAG+AGG | + | chr5_4:22953211-22953230 | Msa0844480:intron | 40.0% | |
| CCATCGTTGGATCTTATAGA+GGG | + | chr5_4:22953212-22953231 | Msa0844480:intron | 40.0% | |
| CGCATGTATCCATACTAGTA+GGG | + | chr5_4:22953348-22953367 | Msa0844480:intron | 40.0% | |
| CAAATTGGTCCCTACTAGTA+TGG | - | chr5_4:22953360-22953379 | None:intergenic | 40.0% | |
| GCTGGAAAGTCATAACTCTA+TGG | + | chr5_4:22953537-22953556 | Msa0844480:intron | 40.0% | |
| !! | AAATGGGTTATGTTGAGGCT+TGG | - | chr5_4:22953602-22953621 | None:intergenic | 40.0% |
| ! | AGCCTCAACATAACCCATTT+TGG | + | chr5_4:22953602-22953621 | Msa0844480:intron | 40.0% |
| AAATGGGAGAAATGGTTGGA+AGG | + | chr5_4:22953672-22953691 | Msa0844480:intron | 40.0% | |
| AGGAAGAGTAGTCATCCATA+AGG | - | chr5_4:22953868-22953887 | None:intergenic | 40.0% | |
| !! | TAGTTGGTAGTCTGAGAACA+TGG | - | chr5_4:22953983-22954002 | None:intergenic | 40.0% |
| GTAGACAACACTTAGGTTCT+TGG | - | chr5_4:22954271-22954290 | None:intergenic | 40.0% | |
| AGCCAATGTAGACAACACTT+AGG | - | chr5_4:22954278-22954297 | None:intergenic | 40.0% | |
| ! | GTGTTGTCTACATTGGCTAA+TGG | + | chr5_4:22954280-22954299 | Msa0844480:intron | 40.0% |
| GTGGATGATGATTCAGAGTT+TGG | - | chr5_4:22954308-22954327 | None:intergenic | 40.0% | |
| TAATGTCAATTGTCCAAGGG+TGG | - | chr5_4:22954327-22954346 | None:intergenic | 40.0% | |
| GTTTGTGGTATGCTACGAAA+TGG | - | chr5_4:22954408-22954427 | None:intergenic | 40.0% | |
| ! | GTCAAAAGGTATATTGCGAG+GGG | - | chr5_4:22954574-22954593 | None:intergenic | 40.0% |
| ! | GTGTCAAAAGGTATATTGCG+AGG | - | chr5_4:22954576-22954595 | None:intergenic | 40.0% |
| TTCCTACATACAATCCCACT+TGG | + | chr5_4:22954597-22954616 | Msa0844480:intron | 40.0% | |
| ATCCAAGTGGGATTGTATGT+AGG | - | chr5_4:22954602-22954621 | None:intergenic | 40.0% | |
| ACTTCTATGGACACATGTGA+AGG | + | chr5_4:22951080-22951099 | Msa0844480:five_prime_UTR | 40.0% | |
| CTGATGAAGGAGAAACTCAT+TGG | - | chr5_4:22954803-22954822 | None:intergenic | 40.0% | |
| AGAAACGCTCAATCTGATGA+AGG | - | chr5_4:22954816-22954835 | None:intergenic | 40.0% | |
| ATATGTAGCATCTTCCCTAC+TGG | + | chr5_4:22954921-22954940 | Msa0844480:three_prime_UTR | 40.0% | |
| TACTTGTGGTGTCTGCAACT+GGG | - | chr5_4:22951155-22951174 | None:intergenic | 45.0% | |
| ATACTTGTGGTGTCTGCAAC+TGG | - | chr5_4:22951156-22951175 | None:intergenic | 45.0% | |
| AAGTTCACGAGCACACAAGT+AGG | + | chr5_4:22951341-22951360 | Msa0844480:intron | 45.0% | |
| TGCATGTGTCGTCTATTACG+GGG | - | chr5_4:22951417-22951436 | None:intergenic | 45.0% | |
| AGCAAGCTAGCAGAATAAGC+AGG | + | chr5_4:22951714-22951733 | Msa0844480:intron | 45.0% | |
| TCATCACTCTGAATTTGGCC+GGG | - | chr5_4:22951940-22951959 | None:intergenic | 45.0% | |
| GTCATCACTCTGAATTTGGC+CGG | - | chr5_4:22951941-22951960 | None:intergenic | 45.0% | |
| TTCAGAGTGATGACTACCAG+TGG | + | chr5_4:22951947-22951966 | Msa0844480:intron | 45.0% | |
| TCAGAGTGATGACTACCAGT+GGG | + | chr5_4:22951948-22951967 | Msa0844480:intron | 45.0% | |
| ACTATGATGAGTCACAGGCA+TGG | - | chr5_4:22951989-22952008 | None:intergenic | 45.0% | |
| AATCTATCCCCCTTACCTCT+AGG | + | chr5_4:22952201-22952220 | Msa0844480:intron | 45.0% | |
| AGGAAGCTAGAGAAAGCTTG+GGG | - | chr5_4:22952274-22952293 | None:intergenic | 45.0% | |
| GAGGAAGCTAGAGAAAGCTT+GGG | - | chr5_4:22952275-22952294 | None:intergenic | 45.0% | |
| AGAGGAAGCTAGAGAAAGCT+TGG | - | chr5_4:22952276-22952295 | None:intergenic | 45.0% | |
| ! | CTTTACGAAGGAAGCATGAG+TGG | - | chr5_4:22953174-22953193 | None:intergenic | 45.0% |
| TTCCTTCGTAAAGTCGAGTC+AGG | + | chr5_4:22953181-22953200 | Msa0844480:intron | 45.0% | |
| ! | AACCTGACTCGACTTTACGA+AGG | - | chr5_4:22953186-22953205 | None:intergenic | 45.0% |
| CCCTCTATAAGATCCAACGA+TGG | - | chr5_4:22953215-22953234 | None:intergenic | 45.0% | |
| GCGCATGTATCCATACTAGT+AGG | + | chr5_4:22953347-22953366 | Msa0844480:intron | 45.0% | |
| AAAGGGGGACGAAAGATAGT+AGG | - | chr5_4:22953892-22953911 | None:intergenic | 45.0% | |
| TCTGAATCATCATCCACCCT+TGG | + | chr5_4:22954311-22954330 | Msa0844480:intron | 45.0% | |
| ! | TGATCAGGAGGGAGAGTTTT+TGG | - | chr5_4:22954488-22954507 | None:intergenic | 45.0% |
| AAACTCTCCCTCCTGATCAT+CGG | + | chr5_4:22954489-22954508 | Msa0844480:intron | 45.0% | |
| TGTTTACCCGATGATCAGGA+GGG | - | chr5_4:22954499-22954518 | None:intergenic | 45.0% | |
| TTGTTTACCCGATGATCAGG+AGG | - | chr5_4:22954500-22954519 | None:intergenic | 45.0% | |
| ! | CCTTTGTTTACCCGATGATC+AGG | - | chr5_4:22954503-22954522 | None:intergenic | 45.0% |
| CCTGATCATCGGGTAAACAA+AGG | + | chr5_4:22954500-22954519 | Msa0844480:intron | 45.0% | |
| GGTCGTTGCATAATCCAAGT+GGG | - | chr5_4:22954614-22954633 | None:intergenic | 45.0% | |
| TGGTCGTTGCATAATCCAAG+TGG | - | chr5_4:22954615-22954634 | None:intergenic | 45.0% | |
| TACTTGCGTTGTCTGCAACT+GGG | - | chr5_4:22954852-22954871 | None:intergenic | 45.0% | |
| ATACTTGCGTTGTCTGCAAC+TGG | - | chr5_4:22954853-22954872 | None:intergenic | 45.0% | |
| !!! | TATTATCTTTAAAATTAATT+AGG | + | chr5_4:22952140-22952159 | Msa0844480:intron | 5.0% |
| !!! | ATTATCTTTAAAATTAATTA+GGG | + | chr5_4:22952141-22952160 | Msa0844480:intron | 5.0% |
| ACTTGTGGTGTCTGCAACTG+GGG | - | chr5_4:22951154-22951173 | None:intergenic | 50.0% | |
| !! | CATCGATTTACACGGCCTGT+GGG | + | chr5_4:22951607-22951626 | Msa0844480:intron | 50.0% |
| CATCACTCTGAATTTGGCCG+GGG | - | chr5_4:22951939-22951958 | None:intergenic | 50.0% | |
| CAGAGTGATGACTACCAGTG+GGG | + | chr5_4:22951949-22951968 | Msa0844480:intron | 50.0% | |
| AGTATTCTGCTTGACCCCAC+TGG | - | chr5_4:22951966-22951985 | None:intergenic | 50.0% | |
| ! | AAGGAAGCATGAGTGGTTCC+TGG | - | chr5_4:22953167-22953186 | None:intergenic | 50.0% |
| AGATTGATCCACACTGGCGT+TGG | - | chr5_4:22953240-22953259 | None:intergenic | 50.0% | |
| ACGAAATTCTAGCCCGTGCT+TGG | + | chr5_4:22953325-22953344 | Msa0844480:intron | 50.0% | |
| ATGGATACATGCGCCAAGCA+CGG | - | chr5_4:22953341-22953360 | None:intergenic | 50.0% | |
| GGTTAAACTCGCACACTTGC+TGG | + | chr5_4:22953519-22953538 | Msa0844480:intron | 50.0% | |
| GGGGACGAAAGATAGTAGGA+AGG | - | chr5_4:22953888-22953907 | None:intergenic | 50.0% | |
| CGTAGCATACCACAAACCTG+TGG | + | chr5_4:22954411-22954430 | Msa0844480:intron | 50.0% | |
| AAGGTGAAGCCACAGGTTTG+TGG | - | chr5_4:22954423-22954442 | None:intergenic | 50.0% | |
| GTCAATGAAGGTGAAGCCAC+AGG | - | chr5_4:22954430-22954449 | None:intergenic | 50.0% | |
| !! | TCAGGAGGGAGAGTTTTTGG+TGG | - | chr5_4:22954485-22954504 | None:intergenic | 50.0% |
| AACTCTCCCTCCTGATCATC+GGG | + | chr5_4:22954490-22954509 | Msa0844480:intron | 50.0% | |
| ACTTGCGTTGTCTGCAACTG+GGG | - | chr5_4:22954851-22954870 | None:intergenic | 50.0% | |
| CCACAGGCCGTGTAAATCGA+TGG | - | chr5_4:22951609-22951628 | None:intergenic | 55.0% | |
| !! | CCATCGATTTACACGGCCTG+TGG | + | chr5_4:22951606-22951625 | Msa0844480:intron | 55.0% |
| CTGGTGGTAGATCTCAGGTG+TGG | - | chr5_4:22953148-22953167 | None:intergenic | 55.0% | |
| CACACCTGAGATCTACCACC+AGG | + | chr5_4:22953146-22953165 | Msa0844480:intron | 55.0% | |
| GGTTCCTGGTGGTAGATCTC+AGG | - | chr5_4:22953153-22953172 | None:intergenic | 55.0% | |
| GAAGCATGAGTGGTTCCTGG+TGG | - | chr5_4:22953164-22953183 | None:intergenic | 55.0% | |
| TGGATACATGCGCCAAGCAC+GGG | - | chr5_4:22953340-22953359 | None:intergenic | 55.0% | |
| TGCGAGGGGCAACTTAGATG+TGG | - | chr5_4:22954560-22954579 | None:intergenic | 55.0% | |
| AGAGGGAGCCAACGCCAGTG+TGG | + | chr5_4:22953229-22953248 | Msa0844480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 22951071 | 22954978 | 22951071 | ID=Msa0844480;Name=Msa0844480 |
| chr5_4 | mRNA | 22951071 | 22954978 | 22951071 | ID=Msa0844480-mRNA-1;Parent=Msa0844480;Name=Msa0844480-mRNA-1;_AED=0.37;_eAED=0.64;_QI=35|0|0.5|1|0|0|2|90|36 |
| chr5_4 | exon | 22951071 | 22951171 | 22951071 | ID=Msa0844480-mRNA-1:exon:9360;Parent=Msa0844480-mRNA-1 |
| chr5_4 | exon | 22954844 | 22954978 | 22954844 | ID=Msa0844480-mRNA-1:exon:9361;Parent=Msa0844480-mRNA-1 |
| chr5_4 | five_prime_UTR | 22951071 | 22951105 | 22951071 | ID=Msa0844480-mRNA-1:five_prime_utr;Parent=Msa0844480-mRNA-1 |
| chr5_4 | CDS | 22951106 | 22951171 | 22951106 | ID=Msa0844480-mRNA-1:cds;Parent=Msa0844480-mRNA-1 |
| chr5_4 | CDS | 22954844 | 22954888 | 22954844 | ID=Msa0844480-mRNA-1:cds;Parent=Msa0844480-mRNA-1 |
| chr5_4 | three_prime_UTR | 22954889 | 22954978 | 22954889 | ID=Msa0844480-mRNA-1:three_prime_utr;Parent=Msa0844480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
