Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888420 | XP_003616287.1 | 48.687 | 419 | 166 | 5 | 1 | 373 | 1 | 416 | 1.24e-129 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888420 | G7K1P7 | 48.687 | 419 | 166 | 5 | 1 | 373 | 1 | 416 | 5.94e-130 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013750 | Msa0888420 | 0.830450 | 2.917458e-55 | -8.615850e-47 |
| Msa0095970 | Msa0888420 | 0.805085 | 1.582748e-49 | -8.615850e-47 |
| Msa0102070 | Msa0888420 | 0.835203 | 1.923561e-56 | -8.615850e-47 |
| Msa0636170 | Msa0888420 | 0.801589 | 8.384623e-49 | -8.615850e-47 |
| Msa0639610 | Msa0888420 | 0.801886 | 7.287734e-49 | -8.615850e-47 |
| Msa0647170 | Msa0888420 | 0.801974 | 6.988422e-49 | -8.615850e-47 |
| Msa0678930 | Msa0888420 | 0.804505 | 2.092248e-49 | -8.615850e-47 |
| Msa0694370 | Msa0888420 | 0.812787 | 3.555679e-51 | -8.615850e-47 |
| Msa0725850 | Msa0888420 | 0.834367 | 3.122722e-56 | -8.615850e-47 |
| Msa0726140 | Msa0888420 | 0.833224 | 6.029812e-56 | -8.615850e-47 |
| Msa0729800 | Msa0888420 | 0.807648 | 4.561664e-50 | -8.615850e-47 |
| Msa0733290 | Msa0888420 | 0.803784 | 2.954711e-49 | -8.615850e-47 |
| Msa0743810 | Msa0888420 | 0.851351 | 9.392136e-61 | -8.615850e-47 |
| Msa0745060 | Msa0888420 | 0.859229 | 4.777772e-63 | -8.615850e-47 |
| Msa0783160 | Msa0888420 | 0.832092 | 1.151285e-55 | -8.615850e-47 |
| Msa0784290 | Msa0888420 | 0.843120 | 1.703564e-58 | -8.615850e-47 |
| Msa0784300 | Msa0888420 | 0.839188 | 1.839410e-57 | -8.615850e-47 |
| Msa0787600 | Msa0888420 | 0.820834 | 5.562731e-53 | -8.615850e-47 |
| Msa0808010 | Msa0888420 | 0.827704 | 1.350800e-54 | -8.615850e-47 |
| Msa0808020 | Msa0888420 | 0.824681 | 7.073372e-54 | -8.615850e-47 |
| Msa0825860 | Msa0888420 | 0.867477 | 1.329510e-65 | -8.615850e-47 |
| Msa0833290 | Msa0888420 | 0.843951 | 1.021775e-58 | -8.615850e-47 |
| Msa0833300 | Msa0888420 | 0.837527 | 4.933062e-57 | -8.615850e-47 |
| Msa0145750 | Msa0888420 | 0.832969 | 6.980058e-56 | -8.615850e-47 |
| Msa0200000 | Msa0888420 | 0.816609 | 5.062880e-52 | -8.615850e-47 |
| Msa0227480 | Msa0888420 | 0.842187 | 3.013997e-58 | -8.615850e-47 |
| Msa0232850 | Msa0888420 | 0.807451 | 5.022465e-50 | -8.615850e-47 |
| Msa0365500 | Msa0888420 | 0.821062 | 4.930918e-53 | -8.615850e-47 |
| Msa0384800 | Msa0888420 | 0.809511 | 1.824845e-50 | -8.615850e-47 |
| Msa0406120 | Msa0888420 | 0.840626 | 7.762099e-58 | -8.615850e-47 |
| Msa0414410 | Msa0888420 | 0.833988 | 3.886932e-56 | -8.615850e-47 |
| Msa0414420 | Msa0888420 | 0.870174 | 1.781290e-66 | -8.615850e-47 |
| Msa0424320 | Msa0888420 | 0.801478 | 8.835463e-49 | -8.615850e-47 |
| Msa0436780 | Msa0888420 | 0.861493 | 9.868073e-64 | -8.615850e-47 |
| Msa0438620 | Msa0888420 | 0.802123 | 6.513234e-49 | -8.615850e-47 |
| Msa0450000 | Msa0888420 | 0.868857 | 4.781344e-66 | -8.615850e-47 |
| Msa0452900 | Msa0888420 | 0.879939 | 8.273346e-70 | -8.615850e-47 |
| Msa0453120 | Msa0888420 | 0.844419 | 7.648923e-59 | -8.615850e-47 |
| Msa0459160 | Msa0888420 | 0.803278 | 3.761981e-49 | -8.615850e-47 |
| Msa0267000 | Msa0888420 | 0.870477 | 1.416403e-66 | -8.615850e-47 |
| Msa0267010 | Msa0888420 | 0.875691 | 2.524591e-68 | -8.615850e-47 |
| Msa0342240 | Msa0888420 | 0.858645 | 7.143764e-63 | -8.615850e-47 |
| Msa0357680 | Msa0888420 | 0.825295 | 5.067956e-54 | -8.615850e-47 |
| Msa0360510 | Msa0888420 | 0.829836 | 4.118882e-55 | -8.615850e-47 |
| Msa0491590 | Msa0888420 | 0.846751 | 1.784478e-59 | -8.615850e-47 |
| Msa0506270 | Msa0888420 | 0.807698 | 4.450436e-50 | -8.615850e-47 |
| Msa0523940 | Msa0888420 | 0.803594 | 3.235345e-49 | -8.615850e-47 |
| Msa0534540 | Msa0888420 | 0.805694 | 1.179330e-49 | -8.615850e-47 |
| Msa0564890 | Msa0888420 | 0.847496 | 1.115001e-59 | -8.615850e-47 |
| Msa0844470 | Msa0888420 | 0.815336 | 9.740395e-52 | -8.615850e-47 |
| Msa0844480 | Msa0888420 | 0.801293 | 9.639476e-49 | -8.615850e-47 |
| Msa0844490 | Msa0888420 | 0.809362 | 1.965007e-50 | -8.615850e-47 |
| Msa0844500 | Msa0888420 | 0.841303 | 5.155557e-58 | -8.615850e-47 |
| Msa0845930 | Msa0888420 | 0.846319 | 2.340575e-59 | -8.615850e-47 |
| Msa0846330 | Msa0888420 | 0.831600 | 1.522945e-55 | -8.615850e-47 |
| Msa0846350 | Msa0888420 | 0.816386 | 5.679579e-52 | -8.615850e-47 |
| Msa0858980 | Msa0888420 | 0.839855 | 1.234495e-57 | -8.615850e-47 |
| Msa0865320 | Msa0888420 | 0.842351 | 2.727168e-58 | -8.615850e-47 |
| Msa0877250 | Msa0888420 | 0.817665 | 2.930568e-52 | -8.615850e-47 |
| Msa0885290 | Msa0888420 | 0.813331 | 2.701311e-51 | -8.615850e-47 |
| Msa0888370 | Msa0888420 | 0.826237 | 3.028665e-54 | -8.615850e-47 |
| Msa0888420 | Msa0890320 | 0.819835 | 9.427261e-53 | -8.615850e-47 |
| Msa0888420 | Msa0899430 | 0.832950 | 7.053483e-56 | -8.615850e-47 |
| Msa0888420 | Msa0899450 | 0.812742 | 3.638321e-51 | -8.615850e-47 |
| Msa0888420 | Msa0914760 | 0.921601 | 2.901601e-88 | -8.615850e-47 |
| Msa0888420 | Msa0952720 | 0.897029 | 2.089157e-76 | -8.615850e-47 |
| Msa0888420 | Msa0953120 | 0.829104 | 6.203432e-55 | -8.615850e-47 |
| Msa0888420 | Msa0958550 | 0.825147 | 5.493025e-54 | -8.615850e-47 |
| Msa0888420 | Msa0981370 | 0.851784 | 7.082233e-61 | -8.615850e-47 |
| Msa0888420 | Msa0989060 | 0.817864 | 2.643845e-52 | -8.615850e-47 |
| Msa0888420 | Msa0991830 | 0.842105 | 3.168508e-58 | -8.615850e-47 |
| Msa0888420 | Msa1016280 | 0.867974 | 9.210453e-66 | -8.615850e-47 |
| Msa0888420 | Msa1024240 | 0.850294 | 1.864097e-60 | -8.615850e-47 |
| Msa0888420 | Msa1025360 | 0.883702 | 3.588018e-71 | -8.615850e-47 |
| Msa0888420 | Msa1025370 | 0.884965 | 1.221427e-71 | -8.615850e-47 |
| Msa0888420 | Msa1028230 | 0.825993 | 3.461420e-54 | -8.615850e-47 |
| Msa0888420 | Msa1044830 | 0.881080 | 3.230754e-70 | -8.615850e-47 |
| Msa0888420 | Msa1044840 | 0.881912 | 1.617888e-70 | -8.615850e-47 |
| Msa0888420 | Msa1060840 | 0.860713 | 1.704835e-63 | -8.615850e-47 |
| Msa0888420 | Msa1092990 | 0.830255 | 3.254998e-55 | -8.615850e-47 |
| Msa0888420 | Msa1100980 | 0.848785 | 4.910442e-60 | -8.615850e-47 |
| Msa0888420 | Msa1109440 | 0.859032 | 5.472914e-63 | -8.615850e-47 |
| Msa0888420 | Msa1112300 | 0.861068 | 1.330208e-63 | -8.615850e-47 |
| Msa0888420 | Msa1121200 | 0.857587 | 1.474215e-62 | -8.615850e-47 |
| Msa0888420 | Msa1121480 | 0.807186 | 5.715061e-50 | -8.615850e-47 |
| Msa0888420 | Msa1135740 | 0.827422 | 1.578279e-54 | -8.615850e-47 |
| Msa0888420 | Msa1146100 | 0.857317 | 1.772676e-62 | -8.615850e-47 |
| Msa0888420 | Msa1146110 | 0.846204 | 2.514897e-59 | -8.615850e-47 |
| Msa0888420 | Msa1149360 | 0.847497 | 1.114000e-59 | -8.615850e-47 |
| Msa0888420 | Msa1150370 | 0.846000 | 2.858794e-59 | -8.615850e-47 |
| Msa0888420 | Msa1173920 | 0.832581 | 8.712207e-56 | -8.615850e-47 |
| Msa0888420 | Msa1178340 | 0.816886 | 4.388826e-52 | -8.615850e-47 |
| Msa0888420 | Msa1184420 | 0.802275 | 6.061722e-49 | -8.615850e-47 |
| Msa0888420 | Msa1187940 | 0.827748 | 1.318065e-54 | -8.615850e-47 |
| Msa0888420 | Msa1187950 | 0.815645 | 8.315257e-52 | -8.615850e-47 |
| Msa0888420 | Msa1192640 | 0.844834 | 5.913213e-59 | -8.615850e-47 |
| Msa0888420 | Msa1241010 | 0.806188 | 9.286431e-50 | -8.615850e-47 |
| Msa0888420 | Msa1248310 | 0.822657 | 2.107008e-53 | -8.615850e-47 |
| Msa0888420 | Msa1248370 | 0.807866 | 4.099456e-50 | -8.615850e-47 |
| Msa0888420 | Msa1269670 | 0.850010 | 2.238783e-60 | -8.615850e-47 |
| Msa0888420 | Msa1270230 | 0.851521 | 8.406089e-61 | -8.615850e-47 |
| Msa0888420 | Msa1270240 | 0.836584 | 8.590178e-57 | -8.615850e-47 |
| Msa0888420 | Msa1270270 | 0.851272 | 9.889415e-61 | -8.615850e-47 |
| Msa0888420 | Msa1283330 | 0.858632 | 7.208352e-63 | -8.615850e-47 |
| Msa0888420 | Msa1284680 | 0.805464 | 1.318402e-49 | -8.615850e-47 |
| Msa0888420 | Msa1285930 | 0.855348 | 6.702297e-62 | -8.615850e-47 |
| Msa0888420 | Msa1287800 | 0.858785 | 6.491511e-63 | -8.615850e-47 |
| Msa0888420 | Msa1287810 | 0.872757 | 2.487845e-67 | -8.615850e-47 |
| Msa0888420 | Msa1288560 | 0.856751 | 2.602454e-62 | -8.615850e-47 |
| Msa0888420 | Msa1289420 | 0.828141 | 1.060384e-54 | -8.615850e-47 |
| Msa0888420 | Msa1289430 | 0.830026 | 3.701317e-55 | -8.615850e-47 |
| Msa0888420 | Msa1305480 | 0.820002 | 8.631276e-53 | -8.615850e-47 |
| Msa0888420 | Msa1307890 | 0.840208 | 9.985402e-58 | -8.615850e-47 |
| Msa0888420 | Msa1321560 | 0.818500 | 1.897247e-52 | -8.615850e-47 |
| Msa0888420 | Msa1340590 | 0.827921 | 1.197375e-54 | -8.615850e-47 |
| Msa0888420 | Msa1342200 | 0.808816 | 2.571118e-50 | -8.615850e-47 |
| Msa0888420 | Msa1345660 | 0.818182 | 2.239545e-52 | -8.615850e-47 |
| Msa0888420 | Msa1397580 | 0.817249 | 3.637870e-52 | -8.615850e-47 |
| Msa0888420 | Msa1402790 | 0.806013 | 1.010698e-49 | -8.615850e-47 |
| Msa0888420 | Msa1404000 | 0.847926 | 8.489446e-60 | -8.615850e-47 |
| Msa0888420 | Msa1404020 | 0.803938 | 2.744468e-49 | -8.615850e-47 |
| Msa0888420 | Msa1415310 | 0.854943 | 8.786812e-62 | -8.615850e-47 |
| Msa0888420 | Msa1422180 | 0.825915 | 3.613296e-54 | -8.615850e-47 |
| Msa0888420 | Msa1433120 | 0.852781 | 3.684741e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888420 | MtrunA17_Chr6g0469931 | 45.041 | 242 | 85 | 7 | 11 | 212 | 11 | 244 | 1.30e-50 | 179 |
| Msa0888420 | MtrunA17_Chr6g0469811 | 44.853 | 136 | 58 | 1 | 3 | 121 | 12 | 147 | 1.76e-34 | 124 |
| Msa0888420 | MtrunA17_Chr7g0259081 | 36.076 | 158 | 84 | 1 | 1 | 141 | 1 | 158 | 1.92e-24 | 98.6 |
| Msa0888420 | MtrunA17_Chr2g0279021 | 26.562 | 256 | 153 | 7 | 152 | 373 | 6 | 260 | 2.76e-21 | 94.4 |
| Msa0888420 | MtrunA17_Chr7g0234721 | 35.443 | 158 | 85 | 3 | 1 | 141 | 1 | 158 | 4.50e-21 | 91.7 |
| Msa0888420 | MtrunA17_Chr4g0077081 | 37.405 | 131 | 75 | 1 | 209 | 339 | 27 | 150 | 5.94e-21 | 89.0 |
| Msa0888420 | MtrunA17_Chr4g0010241 | 36.029 | 136 | 81 | 2 | 45 | 178 | 81 | 212 | 1.81e-18 | 83.6 |
| Msa0888420 | MtrunA17_Chr3g0093401 | 22.131 | 244 | 147 | 4 | 1 | 210 | 1 | 235 | 5.82e-17 | 79.3 |
| Msa0888420 | MtrunA17_Chr1g0193821 | 31.928 | 166 | 102 | 4 | 44 | 208 | 1 | 156 | 6.94e-16 | 76.6 |
| Msa0888420 | MtrunA17_Chr8g0374181 | 29.496 | 139 | 85 | 2 | 248 | 373 | 4 | 142 | 1.85e-14 | 73.2 |
| Msa0888420 | MtrunA17_Chr4g0019691 | 33.333 | 111 | 61 | 1 | 258 | 355 | 22 | 132 | 1.15e-13 | 68.9 |
| Msa0888420 | MtrunA17_Chr1g0206481 | 23.108 | 251 | 156 | 5 | 1 | 216 | 1 | 249 | 1.56e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888420 | AT1G52950.1 | 23.016 | 378 | 235 | 12 | 3 | 333 | 5 | 373 | 2.23e-14 | 75.1 |
Find 115 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGAGGTTGTTAAGTTTA+AGG | 0.165629 | 6_1:+52891283 | Msa0888420:CDS |
| TCAAGCGACGGTCGAATTCT+TGG | 0.257860 | 6_1:-52891452 | None:intergenic |
| GCATCCCCTTCCCTTAGTTT+TGG | 0.284279 | 6_1:-52890498 | None:intergenic |
| ACTTGGAGCAATAGAGAAAT+AGG | 0.300188 | 6_1:-52890532 | None:intergenic |
| GCTGCGAGTGTCCTCTTTGA+TGG | 0.311525 | 6_1:+52892067 | Msa0888420:CDS |
| AGGTCCGAGTGGCCAGAATT+TGG | 0.311706 | 6_1:+52890200 | Msa0888420:CDS |
| ATCTGTGTCGGCGATGGTTA+TGG | 0.323877 | 6_1:+52891785 | Msa0888420:CDS |
| AGTTCTCAGATTCCACAATA+TGG | 0.332187 | 6_1:+52890630 | Msa0888420:CDS |
| GGTTGGGACCTCCCAAATTC+TGG | 0.334168 | 6_1:-52890212 | None:intergenic |
| TTCTCTATTGCTCCAAGTGT+TGG | 0.359141 | 6_1:+52890537 | Msa0888420:CDS |
| TCAAATGAAGACCAAGGTTC+AGG | 0.365297 | 6_1:+52890599 | Msa0888420:CDS |
| GGATTATGTGCGCGCAAGAT+TGG | 0.368593 | 6_1:+52890651 | Msa0888420:CDS |
| AAGGTTGAGTGTGCATTGTT+TGG | 0.369139 | 6_1:+52891024 | Msa0888420:CDS |
| GGTCCGAGTGGCCAGAATTT+GGG | 0.377633 | 6_1:+52890201 | Msa0888420:CDS |
| GATTATGTGCGCGCAAGATT+GGG | 0.379128 | 6_1:+52890652 | Msa0888420:CDS |
| TTGATGGTTCATACAGGGTT+AGG | 0.385662 | 6_1:+52892083 | Msa0888420:CDS |
| GCAAGATTGGGGACGTTTGT+GGG | 0.386052 | 6_1:+52890664 | Msa0888420:CDS |
| CGCAAGATTGGGGACGTTTG+TGG | 0.387411 | 6_1:+52890663 | Msa0888420:CDS |
| TCTCTATTGCTCCAAGTGTT+GGG | 0.392400 | 6_1:+52890538 | Msa0888420:CDS |
| ACAAACTAAAGTACAACAAT+AGG | 0.403538 | 6_1:-52891099 | None:intergenic |
| CTGCTGAGAAGGAGTACGTT+CGG | 0.412854 | 6_1:+52890834 | Msa0888420:CDS |
| TCCTCTTTGATGGTTCATAC+AGG | 0.413679 | 6_1:+52892077 | Msa0888420:CDS |
| CGTTCAGTTGTCTCATGGAT+TGG | 0.415135 | 6_1:+52890969 | Msa0888420:intron |
| TCAAGTGAGTTGGTCTGCTC+AGG | 0.415558 | 6_1:-52890244 | None:intergenic |
| GTTGTGTTTGTTGTGTTTGA+CGG | 0.417315 | 6_1:+52891812 | Msa0888420:CDS |
| GTTGTCGGTGACATTGTTGA+TGG | 0.417362 | 6_1:+52891548 | Msa0888420:CDS |
| TAATGTATTATAGACATCAT+TGG | 0.422707 | 6_1:+52890794 | Msa0888420:intron |
| TTGGACCAATCACCGGCATC+GGG | 0.424932 | 6_1:-52891433 | None:intergenic |
| TGCACACTCAACCTTGCCAC+TGG | 0.431286 | 6_1:-52891016 | None:intergenic |
| TTAACAACCTCAACAATGTC+AGG | 0.431415 | 6_1:-52891275 | None:intergenic |
| TTCCCATGAGCTTTAGCAAA+AGG | 0.435219 | 6_1:-52891059 | None:intergenic |
| TGCTGTTGATTACGACCATT+TGG | 0.440950 | 6_1:+52890689 | Msa0888420:CDS |
| TGCTCAGGCTTCAGAAAGGT+TGG | 0.443164 | 6_1:-52890229 | None:intergenic |
| CAAGGACTCTTGGAGGTTGA+AGG | 0.443571 | 6_1:+52890180 | Msa0888420:CDS |
| CTCATGGGAAAATCTTTGAA+TGG | 0.447927 | 6_1:+52891072 | Msa0888420:CDS |
| TTGTGCCTAGCAAGGACTCT+TGG | 0.448471 | 6_1:+52890170 | Msa0888420:CDS |
| GACATCATTGGTGTTATGAC+TGG | 0.457209 | 6_1:+52890806 | Msa0888420:intron |
| TCTGTGTCGGCGATGGTTAT+GGG | 0.459259 | 6_1:+52891786 | Msa0888420:CDS |
| TGTTGATATTCTTAGGTATG+AGG | 0.459645 | 6_1:+52891757 | Msa0888420:intron |
| TGCTGGTCATAGGGTGAACT+TGG | 0.463484 | 6_1:+52891490 | Msa0888420:CDS |
| TGCTGAGAAGGAGTACGTTC+GGG | 0.464503 | 6_1:+52890835 | Msa0888420:CDS |
| ATTATCGTTCAGTTGTCTCA+TGG | 0.466804 | 6_1:+52890964 | Msa0888420:intron |
| CTTGGACCAATCACCGGCAT+CGG | 0.467503 | 6_1:-52891434 | None:intergenic |
| ATGTGTTTCCGATGGTTCCT+AGG | 0.479260 | 6_1:+52891669 | Msa0888420:CDS |
| GAGGTTGTTAAGTTTAAGGA+GGG | 0.479611 | 6_1:+52891287 | Msa0888420:CDS |
| TCATGGGAAAATCTTTGAAT+GGG | 0.481759 | 6_1:+52891073 | Msa0888420:CDS |
| CCTCTTTGATGGTTCATACA+GGG | 0.482351 | 6_1:+52892078 | Msa0888420:CDS |
| ATGTGTTCTAGCCAAAACTA+AGG | 0.483485 | 6_1:+52890487 | Msa0888420:intron |
| TGCCTAGCAAGGACTCTTGG+AGG | 0.484658 | 6_1:+52890173 | Msa0888420:CDS |
| TTCAATACTCACCAACCAAA+TGG | 0.490463 | 6_1:-52890704 | None:intergenic |
| ACAGCTGAAATCAAATCAAA+GGG | 0.495812 | 6_1:-52890148 | None:intergenic |
| GCTCAGGCTTCAGAAAGGTT+GGG | 0.498445 | 6_1:-52890228 | None:intergenic |
| GAACGGTATGACCCAACACT+TGG | 0.500609 | 6_1:-52890549 | None:intergenic |
| CAGTAGTAAGCACCAAAGTC+GGG | 0.502969 | 6_1:-52891629 | None:intergenic |
| CTTTGGTGCTTACTACTGCA+AGG | 0.505637 | 6_1:+52891634 | Msa0888420:CDS |
| CCTCCCAAATTCTGGCCACT+CGG | 0.509318 | 6_1:-52890204 | None:intergenic |
| GACAATGGAAATTATGTTGT+CGG | 0.510598 | 6_1:+52891533 | Msa0888420:CDS |
| GACTGGGATTTCTGCTGAGA+AGG | 0.512732 | 6_1:+52890823 | Msa0888420:CDS |
| TTGAATGATGTTGTTGACAA+TGG | 0.513287 | 6_1:+52891518 | Msa0888420:CDS |
| AGAGGTGTTACACCCGACTT+TGG | 0.514620 | 6_1:+52891617 | Msa0888420:CDS |
| TGAGGTTGTTAAGTTTAAGG+AGG | 0.515745 | 6_1:+52891286 | Msa0888420:CDS |
| AACAGCTGAAATCAAATCAA+AGG | 0.516399 | 6_1:-52890149 | None:intergenic |
| CATTGTTGATGGTTTAGTTG+AGG | 0.518507 | 6_1:+52891559 | Msa0888420:CDS |
| GCAGTAGTAAGCACCAAAGT+CGG | 0.526570 | 6_1:-52891630 | None:intergenic |
| CGTGAAGCATGTGTTTCCGA+TGG | 0.528330 | 6_1:+52891661 | Msa0888420:CDS |
| GGTTGTGTTGCCCAGTGGCA+AGG | 0.528855 | 6_1:+52891005 | Msa0888420:CDS |
| ATTGTTGATGGTTTAGTTGA+GGG | 0.533734 | 6_1:+52891560 | Msa0888420:CDS |
| TGAGCAAACAGCCCCGATGC+CGG | 0.536019 | 6_1:+52891421 | Msa0888420:CDS |
| TGATGAGCTTCTGAAGCTGA+AGG | 0.542815 | 6_1:+52892009 | Msa0888420:CDS |
| TTCAGCTGTTGTGCCTAGCA+AGG | 0.543003 | 6_1:+52890162 | Msa0888420:CDS |
| GATGGTGCTCATTGATGAAA+AGG | 0.543220 | 6_1:+52890267 | Msa0888420:CDS |
| TTTGGTGCTTACTACTGCAA+GGG | 0.563438 | 6_1:+52891635 | Msa0888420:CDS |
| CGAATTCTTGGACCAATCAC+CGG | 0.566155 | 6_1:-52891440 | None:intergenic |
| TTCTAGCCAAAACTAAGGGA+AGG | 0.569172 | 6_1:+52890492 | Msa0888420:intron |
| TATCAACCCTGACATTGTTG+AGG | 0.569957 | 6_1:+52891268 | Msa0888420:CDS |
| CTAGCCAAAACTAAGGGAAG+GGG | 0.573508 | 6_1:+52890494 | Msa0888420:intron |
| GGTCTGCTCAGGCTTCAGAA+AGG | 0.574625 | 6_1:-52890233 | None:intergenic |
| GGTGATATGCAGAATTTGCT+AGG | 0.575790 | 6_1:+52891833 | Msa0888420:CDS |
| GCACACTCAACCTTGCCACT+GGG | 0.576376 | 6_1:-52891015 | None:intergenic |
| ACTCTCACTTGCCTGAACCT+TGG | 0.576384 | 6_1:-52890610 | None:intergenic |
| GGAGTACGTTCGGGATGGCA+AGG | 0.577455 | 6_1:+52890844 | Msa0888420:CDS |
| TTGTTGATGGTTTAGTTGAG+GGG | 0.580506 | 6_1:+52891561 | Msa0888420:CDS |
| ATTGGTGGTATCCTGCCTGT+AGG | 0.580740 | 6_1:+52891588 | Msa0888420:CDS |
| ATTATGTGCGCGCAAGATTG+GGG | 0.583537 | 6_1:+52890653 | Msa0888420:CDS |
| ACATCATTGGTGTTATGACT+GGG | 0.584395 | 6_1:+52890807 | Msa0888420:CDS |
| GAGCACCATCTCAAGTGAGT+TGG | 0.587463 | 6_1:-52890254 | None:intergenic |
| AACACCTCTATGAAACCTAC+AGG | 0.588301 | 6_1:-52891603 | None:intergenic |
| TGTTGATGGTTTAGTTGAGG+GGG | 0.589085 | 6_1:+52891562 | Msa0888420:CDS |
| TGTGTTCTAGCCAAAACTAA+GGG | 0.595683 | 6_1:+52890488 | Msa0888420:intron |
| TCTAGCCAAAACTAAGGGAA+GGG | 0.605077 | 6_1:+52890493 | Msa0888420:intron |
| CCCTGTATGAACCATCAAAG+AGG | 0.606077 | 6_1:-52892078 | None:intergenic |
| GCAGACCAACTCACTTGAGA+TGG | 0.607842 | 6_1:+52890249 | Msa0888420:CDS |
| TGGATTGGTTATTTGTCGTG+TGG | 0.609341 | 6_1:+52890984 | Msa0888420:CDS |
| GATGAGCTTCTGAAGCTGAA+GGG | 0.610729 | 6_1:+52892010 | Msa0888420:CDS |
| CCTCTATGAAACCTACAGGC+AGG | 0.613923 | 6_1:-52891599 | None:intergenic |
| TAGCATTACCTAGGAACCAT+CGG | 0.615743 | 6_1:-52891677 | None:intergenic |
| GTGAAGATCTGTGTCGGCGA+TGG | 0.620061 | 6_1:+52891779 | Msa0888420:CDS |
| AGGTTGTTAAGTTTAAGGAG+GGG | 0.621121 | 6_1:+52891288 | Msa0888420:CDS |
| GAGAAGGAGTACGTTCGGGA+TGG | 0.623106 | 6_1:+52890839 | Msa0888420:CDS |
| GTTGATTACGACCATTTGGT+TGG | 0.626214 | 6_1:+52890693 | Msa0888420:CDS |
| AACCTCCAAGAGTCCTTGCT+AGG | 0.629201 | 6_1:-52890175 | None:intergenic |
| TATGAGGTGAAGATCTGTGT+CGG | 0.640057 | 6_1:+52891773 | Msa0888420:CDS |
| TGTAAGGATGAAATGTCGAA+CGG | 0.643893 | 6_1:-52890566 | None:intergenic |
| TAACAACCTCAACAATGTCA+GGG | 0.644378 | 6_1:-52891274 | None:intergenic |
| ATTCAAAGTCGAGAAATCAT+CGG | 0.652813 | 6_1:+52892045 | Msa0888420:CDS |
| CCTGCCTGTAGGTTTCATAG+AGG | 0.657138 | 6_1:+52891599 | Msa0888420:CDS |
| GAAGCTCATCAGATAAAACC+CGG | 0.663818 | 6_1:-52891997 | None:intergenic |
| GTCAGGGTTGATAAGAATCG+TGG | 0.666548 | 6_1:-52891258 | None:intergenic |
| CCGAGTGGCCAGAATTTGGG+AGG | 0.668427 | 6_1:+52890204 | Msa0888420:CDS |
| CGTGTGGTTGTGTTGCCCAG+TGG | 0.688882 | 6_1:+52891000 | Msa0888420:CDS |
| TGGACCAATCACCGGCATCG+GGG | 0.690300 | 6_1:-52891432 | None:intergenic |
| GGTTCATACAGGGTTAGGAG+AGG | 0.702192 | 6_1:+52892088 | Msa0888420:CDS |
| AGGGTTGATAAGAATCGTGG+TGG | 0.703111 | 6_1:-52891255 | None:intergenic |
| CAGCTGAAATCAAATCAAAG+GGG | 0.730674 | 6_1:-52890147 | None:intergenic |
| TTGGAGGTTGAAGGTCCGAG+TGG | 0.736514 | 6_1:+52890189 | Msa0888420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTCAAAAATGTAT+AGG | + | chr6_1:52891965-52891984 | Msa0888420:intron | 10.0% |
| !! | TTATTATTTCAAAAATGTAT+AGG | + | chr6_1:52891965-52891984 | Msa0888420:intron | 10.0% |
| !!! | ATTTTTTTTTAAGAATACCT+TGG | - | chr6_1:52891888-52891907 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAAGAATACCT+TGG | - | chr6_1:52891888-52891907 | None:intergenic | 15.0% |
| !!! | ATTTGAAAAAGTAACTTGTA+AGG | - | chr6_1:52890585-52890604 | None:intergenic | 20.0% |
| !! | TAATGTATTATAGACATCAT+TGG | + | chr6_1:52890794-52890813 | Msa0888420:intron | 20.0% |
| !! | TATGTTATGTTGATATTCTT+AGG | + | chr6_1:52891750-52891769 | Msa0888420:intron | 20.0% |
| !!! | ATTTGAAAAAGTAACTTGTA+AGG | - | chr6_1:52890585-52890604 | None:intergenic | 20.0% |
| !! | TAATGTATTATAGACATCAT+TGG | + | chr6_1:52890794-52890813 | Msa0888420:intron | 20.0% |
| !! | TATGTTATGTTGATATTCTT+AGG | + | chr6_1:52891750-52891769 | Msa0888420:intron | 20.0% |
| !! | TGTTTATGTTGTGTAGTTTT+TGG | + | chr6_1:52890296-52890315 | Msa0888420:intron | 25.0% |
| !!! | TAGTTTTTGGAGTTTTGATA+TGG | + | chr6_1:52890309-52890328 | Msa0888420:intron | 25.0% |
| ! | AAACATTACAACATGAACAA+AGG | - | chr6_1:52890349-52890368 | None:intergenic | 25.0% |
| !! | TGTTGTAATGTTTTCGTATT+TGG | + | chr6_1:52890356-52890375 | Msa0888420:intron | 25.0% |
| !!! | TTTTTAGTTTTATTGTCGTG+TGG | + | chr6_1:52890745-52890764 | Msa0888420:intron | 25.0% |
| ! | ACAAACTAAAGTACAACAAT+AGG | - | chr6_1:52891102-52891121 | None:intergenic | 25.0% |
| !!! | TGTTGTACTTTAGTTTGTTA+AGG | + | chr6_1:52891104-52891123 | Msa0888420:intron | 25.0% |
| !!! | TTGGTAATTTTTTGTAGACA+AGG | + | chr6_1:52891208-52891227 | Msa0888420:intron | 25.0% |
| !! | TTTGTGTTTGTATTTTGTGT+AGG | + | chr6_1:52891381-52891400 | Msa0888420:intron | 25.0% |
| !! | AATGTCTTGCAATTTTGTTA+TGG | + | chr6_1:52891922-52891941 | Msa0888420:intron | 25.0% |
| !! | TGTTTATGTTGTGTAGTTTT+TGG | + | chr6_1:52890296-52890315 | Msa0888420:intron | 25.0% |
| !!! | TAGTTTTTGGAGTTTTGATA+TGG | + | chr6_1:52890309-52890328 | Msa0888420:intron | 25.0% |
| ! | AAACATTACAACATGAACAA+AGG | - | chr6_1:52890349-52890368 | None:intergenic | 25.0% |
| !! | TGTTGTAATGTTTTCGTATT+TGG | + | chr6_1:52890356-52890375 | Msa0888420:intron | 25.0% |
| !!! | TTTTTAGTTTTATTGTCGTG+TGG | + | chr6_1:52890745-52890764 | Msa0888420:intron | 25.0% |
| ! | ACAAACTAAAGTACAACAAT+AGG | - | chr6_1:52891102-52891121 | None:intergenic | 25.0% |
| !!! | TGTTGTACTTTAGTTTGTTA+AGG | + | chr6_1:52891104-52891123 | Msa0888420:intron | 25.0% |
| !!! | TTGGTAATTTTTTGTAGACA+AGG | + | chr6_1:52891208-52891227 | Msa0888420:intron | 25.0% |
| !! | TTTGTGTTTGTATTTTGTGT+AGG | + | chr6_1:52891381-52891400 | Msa0888420:intron | 25.0% |
| !! | AATGTCTTGCAATTTTGTTA+TGG | + | chr6_1:52891922-52891941 | Msa0888420:intron | 25.0% |
| ACAGCTGAAATCAAATCAAA+GGG | - | chr6_1:52890151-52890170 | None:intergenic | 30.0% | |
| AACAGCTGAAATCAAATCAA+AGG | - | chr6_1:52890152-52890171 | None:intergenic | 30.0% | |
| ! | TTTTCGTATTTGGTATTGTC+TGG | + | chr6_1:52890366-52890385 | Msa0888420:intron | 30.0% |
| ACAAAGACAGAACTACATAT+TGG | - | chr6_1:52890394-52890413 | None:intergenic | 30.0% | |
| ! | AGAGAAATAGGACATTTTGT+AGG | - | chr6_1:52890523-52890542 | None:intergenic | 30.0% |
| !!! | ACTTTTTCAAATGAAGACCA+AGG | + | chr6_1:52890593-52890612 | Msa0888420:CDS | 30.0% |
| !! | TTTATTGTCGTGTGGTTTTA+TGG | + | chr6_1:52890753-52890772 | Msa0888420:intron | 30.0% |
| TCATGGGAAAATCTTTGAAT+GGG | + | chr6_1:52891073-52891092 | Msa0888420:CDS | 30.0% | |
| GTTAAGGTTAAGATATTTCG+AGG | + | chr6_1:52891120-52891139 | Msa0888420:intron | 30.0% | |
| TGTTGAGGTTGTTAAGTTTA+AGG | + | chr6_1:52891283-52891302 | Msa0888420:CDS | 30.0% | |
| TTGAATGATGTTGTTGACAA+TGG | + | chr6_1:52891518-52891537 | Msa0888420:CDS | 30.0% | |
| GACAATGGAAATTATGTTGT+CGG | + | chr6_1:52891533-52891552 | Msa0888420:CDS | 30.0% | |
| !! | ATTGTTGATGGTTTAGTTGA+GGG | + | chr6_1:52891560-52891579 | Msa0888420:CDS | 30.0% |
| GCTAATGTTATCCTAATGAT+TGG | + | chr6_1:52891696-52891715 | Msa0888420:intron | 30.0% | |
| TGTTGATATTCTTAGGTATG+AGG | + | chr6_1:52891757-52891776 | Msa0888420:intron | 30.0% | |
| ! | TTTGTTATGGATTTGTGTGT+TGG | + | chr6_1:52891935-52891954 | Msa0888420:intron | 30.0% |
| ATTCAAAGTCGAGAAATCAT+CGG | + | chr6_1:52892045-52892064 | Msa0888420:CDS | 30.0% | |
| ACAGCTGAAATCAAATCAAA+GGG | - | chr6_1:52890151-52890170 | None:intergenic | 30.0% | |
| AACAGCTGAAATCAAATCAA+AGG | - | chr6_1:52890152-52890171 | None:intergenic | 30.0% | |
| ! | TTTTCGTATTTGGTATTGTC+TGG | + | chr6_1:52890366-52890385 | Msa0888420:intron | 30.0% |
| ACAAAGACAGAACTACATAT+TGG | - | chr6_1:52890394-52890413 | None:intergenic | 30.0% | |
| ! | AGAGAAATAGGACATTTTGT+AGG | - | chr6_1:52890523-52890542 | None:intergenic | 30.0% |
| !!! | ACTTTTTCAAATGAAGACCA+AGG | + | chr6_1:52890593-52890612 | Msa0888420:CDS | 30.0% |
| !! | TTTATTGTCGTGTGGTTTTA+TGG | + | chr6_1:52890753-52890772 | Msa0888420:intron | 30.0% |
| TCATGGGAAAATCTTTGAAT+GGG | + | chr6_1:52891073-52891092 | Msa0888420:CDS | 30.0% | |
| GTTAAGGTTAAGATATTTCG+AGG | + | chr6_1:52891120-52891139 | Msa0888420:intron | 30.0% | |
| TGTTGAGGTTGTTAAGTTTA+AGG | + | chr6_1:52891283-52891302 | Msa0888420:CDS | 30.0% | |
| TTGAATGATGTTGTTGACAA+TGG | + | chr6_1:52891518-52891537 | Msa0888420:CDS | 30.0% | |
| GACAATGGAAATTATGTTGT+CGG | + | chr6_1:52891533-52891552 | Msa0888420:CDS | 30.0% | |
| !! | ATTGTTGATGGTTTAGTTGA+GGG | + | chr6_1:52891560-52891579 | Msa0888420:CDS | 30.0% |
| GCTAATGTTATCCTAATGAT+TGG | + | chr6_1:52891696-52891715 | Msa0888420:intron | 30.0% | |
| TGTTGATATTCTTAGGTATG+AGG | + | chr6_1:52891757-52891776 | Msa0888420:intron | 30.0% | |
| ! | TTTGTTATGGATTTGTGTGT+TGG | + | chr6_1:52891935-52891954 | Msa0888420:intron | 30.0% |
| ATTCAAAGTCGAGAAATCAT+CGG | + | chr6_1:52892045-52892064 | Msa0888420:CDS | 30.0% | |
| CAGCTGAAATCAAATCAAAG+GGG | - | chr6_1:52890150-52890169 | None:intergenic | 35.0% | |
| ! | GTTTTGCCTAATGAGTTATC+TGG | + | chr6_1:52890416-52890435 | Msa0888420:intron | 35.0% |
| ATGTGTTCTAGCCAAAACTA+AGG | + | chr6_1:52890487-52890506 | Msa0888420:intron | 35.0% | |
| TGTGTTCTAGCCAAAACTAA+GGG | + | chr6_1:52890488-52890507 | Msa0888420:intron | 35.0% | |
| ACTTGGAGCAATAGAGAAAT+AGG | - | chr6_1:52890535-52890554 | None:intergenic | 35.0% | |
| TGTAAGGATGAAATGTCGAA+CGG | - | chr6_1:52890569-52890588 | None:intergenic | 35.0% | |
| AGTTCTCAGATTCCACAATA+TGG | + | chr6_1:52890630-52890649 | Msa0888420:CDS | 35.0% | |
| TTCAATACTCACCAACCAAA+TGG | - | chr6_1:52890707-52890726 | None:intergenic | 35.0% | |
| !! | ACATCATTGGTGTTATGACT+GGG | + | chr6_1:52890807-52890826 | Msa0888420:CDS | 35.0% |
| TAACTCGATCACAATCATCT+TGG | - | chr6_1:52890873-52890892 | None:intergenic | 35.0% | |
| !!! | TGTCAGTGTTTTTTGTGAAG+AGG | + | chr6_1:52890917-52890936 | Msa0888420:intron | 35.0% |
| ATTATCGTTCAGTTGTCTCA+TGG | + | chr6_1:52890964-52890983 | Msa0888420:intron | 35.0% | |
| CTCATGGGAAAATCTTTGAA+TGG | + | chr6_1:52891072-52891091 | Msa0888420:CDS | 35.0% | |
| GGTTAAGATATTTCGAGGTA+TGG | + | chr6_1:52891125-52891144 | Msa0888420:intron | 35.0% | |
| !!! | TAGTGGTTTTGGTGAATCTT+TGG | + | chr6_1:52891189-52891208 | Msa0888420:intron | 35.0% |
| TAACAACCTCAACAATGTCA+GGG | - | chr6_1:52891277-52891296 | None:intergenic | 35.0% | |
| TTAACAACCTCAACAATGTC+AGG | - | chr6_1:52891278-52891297 | None:intergenic | 35.0% | |
| TGAGGTTGTTAAGTTTAAGG+AGG | + | chr6_1:52891286-52891305 | Msa0888420:CDS | 35.0% | |
| GAGGTTGTTAAGTTTAAGGA+GGG | + | chr6_1:52891287-52891306 | Msa0888420:CDS | 35.0% | |
| AGGTTGTTAAGTTTAAGGAG+GGG | + | chr6_1:52891288-52891307 | Msa0888420:CDS | 35.0% | |
| AAAAACTCTTCTTCAAGCGA+CGG | - | chr6_1:52891467-52891486 | None:intergenic | 35.0% | |
| !! | CATTGTTGATGGTTTAGTTG+AGG | + | chr6_1:52891559-52891578 | Msa0888420:CDS | 35.0% |
| !! | TTGTTGATGGTTTAGTTGAG+GGG | + | chr6_1:52891561-52891580 | Msa0888420:CDS | 35.0% |
| GGATAACATTAGCATTACCT+AGG | - | chr6_1:52891689-52891708 | None:intergenic | 35.0% | |
| ACACAAAGACACCAATCATT+AGG | - | chr6_1:52891710-52891729 | None:intergenic | 35.0% | |
| !! | GTTGTGTTTGTTGTGTTTGA+CGG | + | chr6_1:52891812-52891831 | Msa0888420:CDS | 35.0% |
| AGGTAAACAGTGTAGTGATT+TGG | + | chr6_1:52891853-52891872 | Msa0888420:intron | 35.0% | |
| AATGTATAGGCCAAAAATGC+CGG | + | chr6_1:52891978-52891997 | Msa0888420:intron | 35.0% | |
| CAGCTGAAATCAAATCAAAG+GGG | - | chr6_1:52890150-52890169 | None:intergenic | 35.0% | |
| ! | GTTTTGCCTAATGAGTTATC+TGG | + | chr6_1:52890416-52890435 | Msa0888420:intron | 35.0% |
| ATGTGTTCTAGCCAAAACTA+AGG | + | chr6_1:52890487-52890506 | Msa0888420:intron | 35.0% | |
| TGTGTTCTAGCCAAAACTAA+GGG | + | chr6_1:52890488-52890507 | Msa0888420:intron | 35.0% | |
| ACTTGGAGCAATAGAGAAAT+AGG | - | chr6_1:52890535-52890554 | None:intergenic | 35.0% | |
| TGTAAGGATGAAATGTCGAA+CGG | - | chr6_1:52890569-52890588 | None:intergenic | 35.0% | |
| AGTTCTCAGATTCCACAATA+TGG | + | chr6_1:52890630-52890649 | Msa0888420:CDS | 35.0% | |
| TTCAATACTCACCAACCAAA+TGG | - | chr6_1:52890707-52890726 | None:intergenic | 35.0% | |
| !! | ACATCATTGGTGTTATGACT+GGG | + | chr6_1:52890807-52890826 | Msa0888420:CDS | 35.0% |
| TAACTCGATCACAATCATCT+TGG | - | chr6_1:52890873-52890892 | None:intergenic | 35.0% | |
| !!! | TGTCAGTGTTTTTTGTGAAG+AGG | + | chr6_1:52890917-52890936 | Msa0888420:intron | 35.0% |
| ATTATCGTTCAGTTGTCTCA+TGG | + | chr6_1:52890964-52890983 | Msa0888420:intron | 35.0% | |
| CTCATGGGAAAATCTTTGAA+TGG | + | chr6_1:52891072-52891091 | Msa0888420:CDS | 35.0% | |
| GGTTAAGATATTTCGAGGTA+TGG | + | chr6_1:52891125-52891144 | Msa0888420:intron | 35.0% | |
| !!! | TAGTGGTTTTGGTGAATCTT+TGG | + | chr6_1:52891189-52891208 | Msa0888420:intron | 35.0% |
| TAACAACCTCAACAATGTCA+GGG | - | chr6_1:52891277-52891296 | None:intergenic | 35.0% | |
| TTAACAACCTCAACAATGTC+AGG | - | chr6_1:52891278-52891297 | None:intergenic | 35.0% | |
| TGAGGTTGTTAAGTTTAAGG+AGG | + | chr6_1:52891286-52891305 | Msa0888420:CDS | 35.0% | |
| GAGGTTGTTAAGTTTAAGGA+GGG | + | chr6_1:52891287-52891306 | Msa0888420:CDS | 35.0% | |
| AGGTTGTTAAGTTTAAGGAG+GGG | + | chr6_1:52891288-52891307 | Msa0888420:CDS | 35.0% | |
| AAAAACTCTTCTTCAAGCGA+CGG | - | chr6_1:52891467-52891486 | None:intergenic | 35.0% | |
| !! | CATTGTTGATGGTTTAGTTG+AGG | + | chr6_1:52891559-52891578 | Msa0888420:CDS | 35.0% |
| !! | TTGTTGATGGTTTAGTTGAG+GGG | + | chr6_1:52891561-52891580 | Msa0888420:CDS | 35.0% |
| GGATAACATTAGCATTACCT+AGG | - | chr6_1:52891689-52891708 | None:intergenic | 35.0% | |
| ACACAAAGACACCAATCATT+AGG | - | chr6_1:52891710-52891729 | None:intergenic | 35.0% | |
| !! | GTTGTGTTTGTTGTGTTTGA+CGG | + | chr6_1:52891812-52891831 | Msa0888420:CDS | 35.0% |
| AGGTAAACAGTGTAGTGATT+TGG | + | chr6_1:52891853-52891872 | Msa0888420:intron | 35.0% | |
| AATGTATAGGCCAAAAATGC+CGG | + | chr6_1:52891978-52891997 | Msa0888420:intron | 35.0% | |
| GATGGTGCTCATTGATGAAA+AGG | + | chr6_1:52890267-52890286 | Msa0888420:CDS | 40.0% | |
| GGATCTCCAGATAACTCATT+AGG | - | chr6_1:52890425-52890444 | None:intergenic | 40.0% | |
| AATGAGTTATCTGGAGATCC+AGG | + | chr6_1:52890425-52890444 | Msa0888420:intron | 40.0% | |
| ATGAGTTATCTGGAGATCCA+GGG | + | chr6_1:52890426-52890445 | Msa0888420:intron | 40.0% | |
| TTCTAGCCAAAACTAAGGGA+AGG | + | chr6_1:52890492-52890511 | Msa0888420:intron | 40.0% | |
| TCTAGCCAAAACTAAGGGAA+GGG | + | chr6_1:52890493-52890512 | Msa0888420:intron | 40.0% | |
| TTCTCTATTGCTCCAAGTGT+TGG | + | chr6_1:52890537-52890556 | Msa0888420:CDS | 40.0% | |
| TCTCTATTGCTCCAAGTGTT+GGG | + | chr6_1:52890538-52890557 | Msa0888420:CDS | 40.0% | |
| TCAAATGAAGACCAAGGTTC+AGG | + | chr6_1:52890599-52890618 | Msa0888420:CDS | 40.0% | |
| ! | TGCTGTTGATTACGACCATT+TGG | + | chr6_1:52890689-52890708 | Msa0888420:CDS | 40.0% |
| GTTGATTACGACCATTTGGT+TGG | + | chr6_1:52890693-52890712 | Msa0888420:CDS | 40.0% | |
| !!! | GTGTGGTTTTATGGTTGTTG+AGG | + | chr6_1:52890762-52890781 | Msa0888420:intron | 40.0% |
| !! | GGTTTTATGGTTGTTGAGGT+TGG | + | chr6_1:52890766-52890785 | Msa0888420:intron | 40.0% |
| !! | GACATCATTGGTGTTATGAC+TGG | + | chr6_1:52890806-52890825 | Msa0888420:intron | 40.0% |
| TGATCGAGTTAACTGATGAC+AGG | + | chr6_1:52890882-52890901 | Msa0888420:intron | 40.0% | |
| !! | TGGATTGGTTATTTGTCGTG+TGG | + | chr6_1:52890984-52891003 | Msa0888420:CDS | 40.0% |
| AAGGTTGAGTGTGCATTGTT+TGG | + | chr6_1:52891024-52891043 | Msa0888420:CDS | 40.0% | |
| ! | TGACCTTTTGCTAAAGCTCA+TGG | + | chr6_1:52891056-52891075 | Msa0888420:CDS | 40.0% |
| ! | GACCTTTTGCTAAAGCTCAT+GGG | + | chr6_1:52891057-52891076 | Msa0888420:CDS | 40.0% |
| ! | TTCCCATGAGCTTTAGCAAA+AGG | - | chr6_1:52891062-52891081 | None:intergenic | 40.0% |
| AAACCACTACGAAGGATTGA+CGG | - | chr6_1:52891178-52891197 | None:intergenic | 40.0% | |
| ! | TCAATCCTTCGTAGTGGTTT+TGG | + | chr6_1:52891178-52891197 | Msa0888420:intron | 40.0% |
| ATTCACCAAAACCACTACGA+AGG | - | chr6_1:52891186-52891205 | None:intergenic | 40.0% | |
| TATCAACCCTGACATTGTTG+AGG | + | chr6_1:52891268-52891287 | Msa0888420:CDS | 40.0% | |
| ! | GTCGCTTGAAGAAGAGTTTT+TGG | + | chr6_1:52891466-52891485 | Msa0888420:CDS | 40.0% |
| !!! | GAAGAAGAGTTTTTGGTTGC+TGG | + | chr6_1:52891473-52891492 | Msa0888420:CDS | 40.0% |
| !!! | AGTTTTTGGTTGCTGGTCAT+AGG | + | chr6_1:52891480-52891499 | Msa0888420:CDS | 40.0% |
| !!! | GTTTTTGGTTGCTGGTCATA+GGG | + | chr6_1:52891481-52891500 | Msa0888420:CDS | 40.0% |
| !! | TGTTGATGGTTTAGTTGAGG+GGG | + | chr6_1:52891562-52891581 | Msa0888420:CDS | 40.0% |
| AACACCTCTATGAAACCTAC+AGG | - | chr6_1:52891606-52891625 | None:intergenic | 40.0% | |
| !! | TTTGGTGCTTACTACTGCAA+GGG | + | chr6_1:52891635-52891654 | Msa0888420:CDS | 40.0% |
| TAGCATTACCTAGGAACCAT+CGG | - | chr6_1:52891680-52891699 | None:intergenic | 40.0% | |
| TATGAGGTGAAGATCTGTGT+CGG | + | chr6_1:52891773-52891792 | Msa0888420:CDS | 40.0% | |
| ! | GGTGATATGCAGAATTTGCT+AGG | + | chr6_1:52891833-52891852 | Msa0888420:CDS | 40.0% |
| !! | ACAGTGTAGTGATTTGGTGT+CGG | + | chr6_1:52891859-52891878 | Msa0888420:intron | 40.0% |
| GTTATGGATTTGTGTGTTGG+TGG | + | chr6_1:52891938-52891957 | Msa0888420:intron | 40.0% | |
| ATGTATAGGCCAAAAATGCC+GGG | + | chr6_1:52891979-52891998 | Msa0888420:intron | 40.0% | |
| ! | CAGATAAAACCCGGCATTTT+TGG | - | chr6_1:52891991-52892010 | None:intergenic | 40.0% |
| GAAGCTCATCAGATAAAACC+CGG | - | chr6_1:52892000-52892019 | None:intergenic | 40.0% | |
| ! | TCCTCTTTGATGGTTCATAC+AGG | + | chr6_1:52892077-52892096 | Msa0888420:CDS | 40.0% |
| ! | CCTCTTTGATGGTTCATACA+GGG | + | chr6_1:52892078-52892097 | Msa0888420:CDS | 40.0% |
| ! | TTGATGGTTCATACAGGGTT+AGG | + | chr6_1:52892083-52892102 | Msa0888420:CDS | 40.0% |
| GATGGTGCTCATTGATGAAA+AGG | + | chr6_1:52890267-52890286 | Msa0888420:CDS | 40.0% | |
| GGATCTCCAGATAACTCATT+AGG | - | chr6_1:52890425-52890444 | None:intergenic | 40.0% | |
| AATGAGTTATCTGGAGATCC+AGG | + | chr6_1:52890425-52890444 | Msa0888420:intron | 40.0% | |
| ATGAGTTATCTGGAGATCCA+GGG | + | chr6_1:52890426-52890445 | Msa0888420:intron | 40.0% | |
| TTCTAGCCAAAACTAAGGGA+AGG | + | chr6_1:52890492-52890511 | Msa0888420:intron | 40.0% | |
| TCTAGCCAAAACTAAGGGAA+GGG | + | chr6_1:52890493-52890512 | Msa0888420:intron | 40.0% | |
| TTCTCTATTGCTCCAAGTGT+TGG | + | chr6_1:52890537-52890556 | Msa0888420:CDS | 40.0% | |
| TCTCTATTGCTCCAAGTGTT+GGG | + | chr6_1:52890538-52890557 | Msa0888420:CDS | 40.0% | |
| TCAAATGAAGACCAAGGTTC+AGG | + | chr6_1:52890599-52890618 | Msa0888420:CDS | 40.0% | |
| ! | TGCTGTTGATTACGACCATT+TGG | + | chr6_1:52890689-52890708 | Msa0888420:CDS | 40.0% |
| GTTGATTACGACCATTTGGT+TGG | + | chr6_1:52890693-52890712 | Msa0888420:CDS | 40.0% | |
| !!! | GTGTGGTTTTATGGTTGTTG+AGG | + | chr6_1:52890762-52890781 | Msa0888420:intron | 40.0% |
| !! | GGTTTTATGGTTGTTGAGGT+TGG | + | chr6_1:52890766-52890785 | Msa0888420:intron | 40.0% |
| !! | GACATCATTGGTGTTATGAC+TGG | + | chr6_1:52890806-52890825 | Msa0888420:intron | 40.0% |
| TGATCGAGTTAACTGATGAC+AGG | + | chr6_1:52890882-52890901 | Msa0888420:intron | 40.0% | |
| !! | TGGATTGGTTATTTGTCGTG+TGG | + | chr6_1:52890984-52891003 | Msa0888420:CDS | 40.0% |
| AAGGTTGAGTGTGCATTGTT+TGG | + | chr6_1:52891024-52891043 | Msa0888420:CDS | 40.0% | |
| ! | TGACCTTTTGCTAAAGCTCA+TGG | + | chr6_1:52891056-52891075 | Msa0888420:CDS | 40.0% |
| ! | GACCTTTTGCTAAAGCTCAT+GGG | + | chr6_1:52891057-52891076 | Msa0888420:CDS | 40.0% |
| ! | TTCCCATGAGCTTTAGCAAA+AGG | - | chr6_1:52891062-52891081 | None:intergenic | 40.0% |
| AAACCACTACGAAGGATTGA+CGG | - | chr6_1:52891178-52891197 | None:intergenic | 40.0% | |
| ! | TCAATCCTTCGTAGTGGTTT+TGG | + | chr6_1:52891178-52891197 | Msa0888420:intron | 40.0% |
| ATTCACCAAAACCACTACGA+AGG | - | chr6_1:52891186-52891205 | None:intergenic | 40.0% | |
| TATCAACCCTGACATTGTTG+AGG | + | chr6_1:52891268-52891287 | Msa0888420:CDS | 40.0% | |
| ! | GTCGCTTGAAGAAGAGTTTT+TGG | + | chr6_1:52891466-52891485 | Msa0888420:CDS | 40.0% |
| !!! | GAAGAAGAGTTTTTGGTTGC+TGG | + | chr6_1:52891473-52891492 | Msa0888420:CDS | 40.0% |
| !!! | AGTTTTTGGTTGCTGGTCAT+AGG | + | chr6_1:52891480-52891499 | Msa0888420:CDS | 40.0% |
| !!! | GTTTTTGGTTGCTGGTCATA+GGG | + | chr6_1:52891481-52891500 | Msa0888420:CDS | 40.0% |
| !! | TGTTGATGGTTTAGTTGAGG+GGG | + | chr6_1:52891562-52891581 | Msa0888420:CDS | 40.0% |
| AACACCTCTATGAAACCTAC+AGG | - | chr6_1:52891606-52891625 | None:intergenic | 40.0% | |
| !! | TTTGGTGCTTACTACTGCAA+GGG | + | chr6_1:52891635-52891654 | Msa0888420:CDS | 40.0% |
| TAGCATTACCTAGGAACCAT+CGG | - | chr6_1:52891680-52891699 | None:intergenic | 40.0% | |
| TATGAGGTGAAGATCTGTGT+CGG | + | chr6_1:52891773-52891792 | Msa0888420:CDS | 40.0% | |
| ! | GGTGATATGCAGAATTTGCT+AGG | + | chr6_1:52891833-52891852 | Msa0888420:CDS | 40.0% |
| !! | ACAGTGTAGTGATTTGGTGT+CGG | + | chr6_1:52891859-52891878 | Msa0888420:intron | 40.0% |
| GTTATGGATTTGTGTGTTGG+TGG | + | chr6_1:52891938-52891957 | Msa0888420:intron | 40.0% | |
| ATGTATAGGCCAAAAATGCC+GGG | + | chr6_1:52891979-52891998 | Msa0888420:intron | 40.0% | |
| ! | CAGATAAAACCCGGCATTTT+TGG | - | chr6_1:52891991-52892010 | None:intergenic | 40.0% |
| GAAGCTCATCAGATAAAACC+CGG | - | chr6_1:52892000-52892019 | None:intergenic | 40.0% | |
| ! | TCCTCTTTGATGGTTCATAC+AGG | + | chr6_1:52892077-52892096 | Msa0888420:CDS | 40.0% |
| ! | CCTCTTTGATGGTTCATACA+GGG | + | chr6_1:52892078-52892097 | Msa0888420:CDS | 40.0% |
| ! | TTGATGGTTCATACAGGGTT+AGG | + | chr6_1:52892083-52892102 | Msa0888420:CDS | 40.0% |
| CTAGCCAAAACTAAGGGAAG+GGG | + | chr6_1:52890494-52890513 | Msa0888420:intron | 45.0% | |
| CGCGCACATAATCCATATTG+TGG | - | chr6_1:52890645-52890664 | None:intergenic | 45.0% | |
| GATTATGTGCGCGCAAGATT+GGG | + | chr6_1:52890652-52890671 | Msa0888420:CDS | 45.0% | |
| ATTATGTGCGCGCAAGATTG+GGG | + | chr6_1:52890653-52890672 | Msa0888420:CDS | 45.0% | |
| CGTTCAGTTGTCTCATGGAT+TGG | + | chr6_1:52890969-52890988 | Msa0888420:intron | 45.0% | |
| ! | GGCATTCAACACGTTCTAGA+GGG | - | chr6_1:52891237-52891256 | None:intergenic | 45.0% |
| TGGCATTCAACACGTTCTAG+AGG | - | chr6_1:52891238-52891257 | None:intergenic | 45.0% | |
| !! | AGGGTTGATAAGAATCGTGG+TGG | - | chr6_1:52891258-52891277 | None:intergenic | 45.0% |
| !! | GTCAGGGTTGATAAGAATCG+TGG | - | chr6_1:52891261-52891280 | None:intergenic | 45.0% |
| CGAATTCTTGGACCAATCAC+CGG | - | chr6_1:52891443-52891462 | None:intergenic | 45.0% | |
| GTTGTCGGTGACATTGTTGA+TGG | + | chr6_1:52891548-52891567 | Msa0888420:CDS | 45.0% | |
| GTTTAGTTGAGGGGGATGAT+TGG | + | chr6_1:52891570-52891589 | Msa0888420:CDS | 45.0% | |
| CAGTAGTAAGCACCAAAGTC+GGG | - | chr6_1:52891632-52891651 | None:intergenic | 45.0% | |
| GCAGTAGTAAGCACCAAAGT+CGG | - | chr6_1:52891633-52891652 | None:intergenic | 45.0% | |
| !! | CTTTGGTGCTTACTACTGCA+AGG | + | chr6_1:52891634-52891653 | Msa0888420:CDS | 45.0% |
| ATGTGTTTCCGATGGTTCCT+AGG | + | chr6_1:52891669-52891688 | Msa0888420:CDS | 45.0% | |
| !! | TGATGAGCTTCTGAAGCTGA+AGG | + | chr6_1:52892009-52892028 | Msa0888420:CDS | 45.0% |
| !! | GATGAGCTTCTGAAGCTGAA+GGG | + | chr6_1:52892010-52892029 | Msa0888420:CDS | 45.0% |
| CCCTGTATGAACCATCAAAG+AGG | - | chr6_1:52892081-52892100 | None:intergenic | 45.0% | |
| CTAGCCAAAACTAAGGGAAG+GGG | + | chr6_1:52890494-52890513 | Msa0888420:intron | 45.0% | |
| CGCGCACATAATCCATATTG+TGG | - | chr6_1:52890645-52890664 | None:intergenic | 45.0% | |
| GATTATGTGCGCGCAAGATT+GGG | + | chr6_1:52890652-52890671 | Msa0888420:CDS | 45.0% | |
| ATTATGTGCGCGCAAGATTG+GGG | + | chr6_1:52890653-52890672 | Msa0888420:CDS | 45.0% | |
| CGTTCAGTTGTCTCATGGAT+TGG | + | chr6_1:52890969-52890988 | Msa0888420:intron | 45.0% | |
| ! | GGCATTCAACACGTTCTAGA+GGG | - | chr6_1:52891237-52891256 | None:intergenic | 45.0% |
| TGGCATTCAACACGTTCTAG+AGG | - | chr6_1:52891238-52891257 | None:intergenic | 45.0% | |
| !! | AGGGTTGATAAGAATCGTGG+TGG | - | chr6_1:52891258-52891277 | None:intergenic | 45.0% |
| !! | GTCAGGGTTGATAAGAATCG+TGG | - | chr6_1:52891261-52891280 | None:intergenic | 45.0% |
| CGAATTCTTGGACCAATCAC+CGG | - | chr6_1:52891443-52891462 | None:intergenic | 45.0% | |
| GTTGTCGGTGACATTGTTGA+TGG | + | chr6_1:52891548-52891567 | Msa0888420:CDS | 45.0% | |
| GTTTAGTTGAGGGGGATGAT+TGG | + | chr6_1:52891570-52891589 | Msa0888420:CDS | 45.0% | |
| CAGTAGTAAGCACCAAAGTC+GGG | - | chr6_1:52891632-52891651 | None:intergenic | 45.0% | |
| GCAGTAGTAAGCACCAAAGT+CGG | - | chr6_1:52891633-52891652 | None:intergenic | 45.0% | |
| !! | CTTTGGTGCTTACTACTGCA+AGG | + | chr6_1:52891634-52891653 | Msa0888420:CDS | 45.0% |
| ATGTGTTTCCGATGGTTCCT+AGG | + | chr6_1:52891669-52891688 | Msa0888420:CDS | 45.0% | |
| !! | TGATGAGCTTCTGAAGCTGA+AGG | + | chr6_1:52892009-52892028 | Msa0888420:CDS | 45.0% |
| !! | GATGAGCTTCTGAAGCTGAA+GGG | + | chr6_1:52892010-52892029 | Msa0888420:CDS | 45.0% |
| CCCTGTATGAACCATCAAAG+AGG | - | chr6_1:52892081-52892100 | None:intergenic | 45.0% | |
| TTCAGCTGTTGTGCCTAGCA+AGG | + | chr6_1:52890162-52890181 | Msa0888420:CDS | 50.0% | |
| TTGTGCCTAGCAAGGACTCT+TGG | + | chr6_1:52890170-52890189 | Msa0888420:CDS | 50.0% | |
| AACCTCCAAGAGTCCTTGCT+AGG | - | chr6_1:52890178-52890197 | None:intergenic | 50.0% | |
| CAAGGACTCTTGGAGGTTGA+AGG | + | chr6_1:52890180-52890199 | Msa0888420:CDS | 50.0% | |
| GCTCAGGCTTCAGAAAGGTT+GGG | - | chr6_1:52890231-52890250 | None:intergenic | 50.0% | |
| TGCTCAGGCTTCAGAAAGGT+TGG | - | chr6_1:52890232-52890251 | None:intergenic | 50.0% | |
| !! | TCAAGTGAGTTGGTCTGCTC+AGG | - | chr6_1:52890247-52890266 | None:intergenic | 50.0% |
| GCAGACCAACTCACTTGAGA+TGG | + | chr6_1:52890249-52890268 | Msa0888420:CDS | 50.0% | |
| GAGCACCATCTCAAGTGAGT+TGG | - | chr6_1:52890257-52890276 | None:intergenic | 50.0% | |
| TTGCATGTATGGTGTAGCCC+TGG | - | chr6_1:52890446-52890465 | None:intergenic | 50.0% | |
| ACACCATACATGCAAGCGTG+AGG | + | chr6_1:52890451-52890470 | Msa0888420:intron | 50.0% | |
| CTTCCTCACGCTTGCATGTA+TGG | - | chr6_1:52890457-52890476 | None:intergenic | 50.0% | |
| ! | GCATCCCCTTCCCTTAGTTT+TGG | - | chr6_1:52890501-52890520 | None:intergenic | 50.0% |
| GAACGGTATGACCCAACACT+TGG | - | chr6_1:52890552-52890571 | None:intergenic | 50.0% | |
| ACTCTCACTTGCCTGAACCT+TGG | - | chr6_1:52890613-52890632 | None:intergenic | 50.0% | |
| GGATTATGTGCGCGCAAGAT+TGG | + | chr6_1:52890651-52890670 | Msa0888420:CDS | 50.0% | |
| GCAAGATTGGGGACGTTTGT+GGG | + | chr6_1:52890664-52890683 | Msa0888420:CDS | 50.0% | |
| GACTGGGATTTCTGCTGAGA+AGG | + | chr6_1:52890823-52890842 | Msa0888420:CDS | 50.0% | |
| ! | CTGCTGAGAAGGAGTACGTT+CGG | + | chr6_1:52890834-52890853 | Msa0888420:CDS | 50.0% |
| ! | TGCTGAGAAGGAGTACGTTC+GGG | + | chr6_1:52890835-52890854 | Msa0888420:CDS | 50.0% |
| TGACCGTCAATCCTTCGTAG+TGG | + | chr6_1:52891172-52891191 | Msa0888420:intron | 50.0% | |
| TCAAGCGACGGTCGAATTCT+TGG | - | chr6_1:52891455-52891474 | None:intergenic | 50.0% | |
| TGCTGGTCATAGGGTGAACT+TGG | + | chr6_1:52891490-52891509 | Msa0888420:CDS | 50.0% | |
| TAGTTGAGGGGGATGATTGG+TGG | + | chr6_1:52891573-52891592 | Msa0888420:CDS | 50.0% | |
| ! | ATTGGTGGTATCCTGCCTGT+AGG | + | chr6_1:52891588-52891607 | Msa0888420:CDS | 50.0% |
| CCTCTATGAAACCTACAGGC+AGG | - | chr6_1:52891602-52891621 | None:intergenic | 50.0% | |
| CCTGCCTGTAGGTTTCATAG+AGG | + | chr6_1:52891599-52891618 | Msa0888420:CDS | 50.0% | |
| !! | AGAGGTGTTACACCCGACTT+TGG | + | chr6_1:52891617-52891636 | Msa0888420:CDS | 50.0% |
| CGTGAAGCATGTGTTTCCGA+TGG | + | chr6_1:52891661-52891680 | Msa0888420:CDS | 50.0% | |
| ! | ATCTGTGTCGGCGATGGTTA+TGG | + | chr6_1:52891785-52891804 | Msa0888420:CDS | 50.0% |
| ! | TCTGTGTCGGCGATGGTTAT+GGG | + | chr6_1:52891786-52891805 | Msa0888420:CDS | 50.0% |
| GGTTCATACAGGGTTAGGAG+AGG | + | chr6_1:52892088-52892107 | Msa0888420:CDS | 50.0% | |
| TTCAGCTGTTGTGCCTAGCA+AGG | + | chr6_1:52890162-52890181 | Msa0888420:CDS | 50.0% | |
| TTGTGCCTAGCAAGGACTCT+TGG | + | chr6_1:52890170-52890189 | Msa0888420:CDS | 50.0% | |
| AACCTCCAAGAGTCCTTGCT+AGG | - | chr6_1:52890178-52890197 | None:intergenic | 50.0% | |
| CAAGGACTCTTGGAGGTTGA+AGG | + | chr6_1:52890180-52890199 | Msa0888420:CDS | 50.0% | |
| GCTCAGGCTTCAGAAAGGTT+GGG | - | chr6_1:52890231-52890250 | None:intergenic | 50.0% | |
| TGCTCAGGCTTCAGAAAGGT+TGG | - | chr6_1:52890232-52890251 | None:intergenic | 50.0% | |
| !! | TCAAGTGAGTTGGTCTGCTC+AGG | - | chr6_1:52890247-52890266 | None:intergenic | 50.0% |
| GCAGACCAACTCACTTGAGA+TGG | + | chr6_1:52890249-52890268 | Msa0888420:CDS | 50.0% | |
| GAGCACCATCTCAAGTGAGT+TGG | - | chr6_1:52890257-52890276 | None:intergenic | 50.0% | |
| TTGCATGTATGGTGTAGCCC+TGG | - | chr6_1:52890446-52890465 | None:intergenic | 50.0% | |
| ACACCATACATGCAAGCGTG+AGG | + | chr6_1:52890451-52890470 | Msa0888420:intron | 50.0% | |
| CTTCCTCACGCTTGCATGTA+TGG | - | chr6_1:52890457-52890476 | None:intergenic | 50.0% | |
| ! | GCATCCCCTTCCCTTAGTTT+TGG | - | chr6_1:52890501-52890520 | None:intergenic | 50.0% |
| GAACGGTATGACCCAACACT+TGG | - | chr6_1:52890552-52890571 | None:intergenic | 50.0% | |
| ACTCTCACTTGCCTGAACCT+TGG | - | chr6_1:52890613-52890632 | None:intergenic | 50.0% | |
| GGATTATGTGCGCGCAAGAT+TGG | + | chr6_1:52890651-52890670 | Msa0888420:CDS | 50.0% | |
| GCAAGATTGGGGACGTTTGT+GGG | + | chr6_1:52890664-52890683 | Msa0888420:CDS | 50.0% | |
| GACTGGGATTTCTGCTGAGA+AGG | + | chr6_1:52890823-52890842 | Msa0888420:CDS | 50.0% | |
| ! | CTGCTGAGAAGGAGTACGTT+CGG | + | chr6_1:52890834-52890853 | Msa0888420:CDS | 50.0% |
| ! | TGCTGAGAAGGAGTACGTTC+GGG | + | chr6_1:52890835-52890854 | Msa0888420:CDS | 50.0% |
| TGACCGTCAATCCTTCGTAG+TGG | + | chr6_1:52891172-52891191 | Msa0888420:intron | 50.0% | |
| TCAAGCGACGGTCGAATTCT+TGG | - | chr6_1:52891455-52891474 | None:intergenic | 50.0% | |
| TGCTGGTCATAGGGTGAACT+TGG | + | chr6_1:52891490-52891509 | Msa0888420:CDS | 50.0% | |
| TAGTTGAGGGGGATGATTGG+TGG | + | chr6_1:52891573-52891592 | Msa0888420:CDS | 50.0% | |
| ! | ATTGGTGGTATCCTGCCTGT+AGG | + | chr6_1:52891588-52891607 | Msa0888420:CDS | 50.0% |
| CCTCTATGAAACCTACAGGC+AGG | - | chr6_1:52891602-52891621 | None:intergenic | 50.0% | |
| CCTGCCTGTAGGTTTCATAG+AGG | + | chr6_1:52891599-52891618 | Msa0888420:CDS | 50.0% | |
| !! | AGAGGTGTTACACCCGACTT+TGG | + | chr6_1:52891617-52891636 | Msa0888420:CDS | 50.0% |
| CGTGAAGCATGTGTTTCCGA+TGG | + | chr6_1:52891661-52891680 | Msa0888420:CDS | 50.0% | |
| ! | ATCTGTGTCGGCGATGGTTA+TGG | + | chr6_1:52891785-52891804 | Msa0888420:CDS | 50.0% |
| ! | TCTGTGTCGGCGATGGTTAT+GGG | + | chr6_1:52891786-52891805 | Msa0888420:CDS | 50.0% |
| GGTTCATACAGGGTTAGGAG+AGG | + | chr6_1:52892088-52892107 | Msa0888420:CDS | 50.0% | |
| TGCCTAGCAAGGACTCTTGG+AGG | + | chr6_1:52890173-52890192 | Msa0888420:CDS | 55.0% | |
| TTGGAGGTTGAAGGTCCGAG+TGG | + | chr6_1:52890189-52890208 | Msa0888420:CDS | 55.0% | |
| AGGTCCGAGTGGCCAGAATT+TGG | + | chr6_1:52890200-52890219 | Msa0888420:CDS | 55.0% | |
| GGTCCGAGTGGCCAGAATTT+GGG | + | chr6_1:52890201-52890220 | Msa0888420:CDS | 55.0% | |
| CCTCCCAAATTCTGGCCACT+CGG | - | chr6_1:52890207-52890226 | None:intergenic | 55.0% | |
| GGTTGGGACCTCCCAAATTC+TGG | - | chr6_1:52890215-52890234 | None:intergenic | 55.0% | |
| GGTCTGCTCAGGCTTCAGAA+AGG | - | chr6_1:52890236-52890255 | None:intergenic | 55.0% | |
| CGCAAGATTGGGGACGTTTG+TGG | + | chr6_1:52890663-52890682 | Msa0888420:CDS | 55.0% | |
| ! | GAGAAGGAGTACGTTCGGGA+TGG | + | chr6_1:52890839-52890858 | Msa0888420:CDS | 55.0% |
| GCACACTCAACCTTGCCACT+GGG | - | chr6_1:52891018-52891037 | None:intergenic | 55.0% | |
| TGCACACTCAACCTTGCCAC+TGG | - | chr6_1:52891019-52891038 | None:intergenic | 55.0% | |
| TTGGACCAATCACCGGCATC+GGG | - | chr6_1:52891436-52891455 | None:intergenic | 55.0% | |
| CTTGGACCAATCACCGGCAT+CGG | - | chr6_1:52891437-52891456 | None:intergenic | 55.0% | |
| ! | GTGAAGATCTGTGTCGGCGA+TGG | + | chr6_1:52891779-52891798 | Msa0888420:CDS | 55.0% |
| !! | TGATTTGGTGTCGGCTGCCA+AGG | + | chr6_1:52891868-52891887 | Msa0888420:intron | 55.0% |
| GCTGCGAGTGTCCTCTTTGA+TGG | + | chr6_1:52892067-52892086 | Msa0888420:CDS | 55.0% | |
| TGCCTAGCAAGGACTCTTGG+AGG | + | chr6_1:52890173-52890192 | Msa0888420:CDS | 55.0% | |
| TTGGAGGTTGAAGGTCCGAG+TGG | + | chr6_1:52890189-52890208 | Msa0888420:CDS | 55.0% | |
| AGGTCCGAGTGGCCAGAATT+TGG | + | chr6_1:52890200-52890219 | Msa0888420:CDS | 55.0% | |
| GGTCCGAGTGGCCAGAATTT+GGG | + | chr6_1:52890201-52890220 | Msa0888420:CDS | 55.0% | |
| CCTCCCAAATTCTGGCCACT+CGG | - | chr6_1:52890207-52890226 | None:intergenic | 55.0% | |
| GGTTGGGACCTCCCAAATTC+TGG | - | chr6_1:52890215-52890234 | None:intergenic | 55.0% | |
| GGTCTGCTCAGGCTTCAGAA+AGG | - | chr6_1:52890236-52890255 | None:intergenic | 55.0% | |
| CGCAAGATTGGGGACGTTTG+TGG | + | chr6_1:52890663-52890682 | Msa0888420:CDS | 55.0% | |
| ! | GAGAAGGAGTACGTTCGGGA+TGG | + | chr6_1:52890839-52890858 | Msa0888420:CDS | 55.0% |
| GCACACTCAACCTTGCCACT+GGG | - | chr6_1:52891018-52891037 | None:intergenic | 55.0% | |
| TGCACACTCAACCTTGCCAC+TGG | - | chr6_1:52891019-52891038 | None:intergenic | 55.0% | |
| TTGGACCAATCACCGGCATC+GGG | - | chr6_1:52891436-52891455 | None:intergenic | 55.0% | |
| CTTGGACCAATCACCGGCAT+CGG | - | chr6_1:52891437-52891456 | None:intergenic | 55.0% | |
| ! | GTGAAGATCTGTGTCGGCGA+TGG | + | chr6_1:52891779-52891798 | Msa0888420:CDS | 55.0% |
| !! | TGATTTGGTGTCGGCTGCCA+AGG | + | chr6_1:52891868-52891887 | Msa0888420:intron | 55.0% |
| GCTGCGAGTGTCCTCTTTGA+TGG | + | chr6_1:52892067-52892086 | Msa0888420:CDS | 55.0% | |
| CCGAGTGGCCAGAATTTGGG+AGG | + | chr6_1:52890204-52890223 | Msa0888420:CDS | 60.0% | |
| GGAGTACGTTCGGGATGGCA+AGG | + | chr6_1:52890844-52890863 | Msa0888420:CDS | 60.0% | |
| CGTGTGGTTGTGTTGCCCAG+TGG | + | chr6_1:52891000-52891019 | Msa0888420:CDS | 60.0% | |
| GGTTGTGTTGCCCAGTGGCA+AGG | + | chr6_1:52891005-52891024 | Msa0888420:CDS | 60.0% | |
| TGAGCAAACAGCCCCGATGC+CGG | + | chr6_1:52891421-52891440 | Msa0888420:CDS | 60.0% | |
| TGGACCAATCACCGGCATCG+GGG | - | chr6_1:52891435-52891454 | None:intergenic | 60.0% | |
| CCGAGTGGCCAGAATTTGGG+AGG | + | chr6_1:52890204-52890223 | Msa0888420:CDS | 60.0% | |
| GGAGTACGTTCGGGATGGCA+AGG | + | chr6_1:52890844-52890863 | Msa0888420:CDS | 60.0% | |
| CGTGTGGTTGTGTTGCCCAG+TGG | + | chr6_1:52891000-52891019 | Msa0888420:CDS | 60.0% | |
| GGTTGTGTTGCCCAGTGGCA+AGG | + | chr6_1:52891005-52891024 | Msa0888420:CDS | 60.0% | |
| TGAGCAAACAGCCCCGATGC+CGG | + | chr6_1:52891421-52891440 | Msa0888420:CDS | 60.0% | |
| TGGACCAATCACCGGCATCG+GGG | - | chr6_1:52891435-52891454 | None:intergenic | 60.0% | |
| ACAGCCCCGATGCCGGTGAT+TGG | + | chr6_1:52891428-52891447 | Msa0888420:CDS | 65.0% | |
| ACAGCCCCGATGCCGGTGAT+TGG | + | chr6_1:52891428-52891447 | Msa0888420:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 52890139 | 52892120 | 52890139 | ID=Msa0888420;Name=Msa0888420 |
| chr6_1 | mRNA | 52890139 | 52892120 | 52890139 | ID=Msa0888420-mRNA-1;Parent=Msa0888420;Name=Msa0888420-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|1|1|8|0|376 |
| chr6_1 | exon | 52890139 | 52890288 | 52890139 | ID=Msa0888420-mRNA-1:exon:10666;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52890498 | 52890714 | 52890498 | ID=Msa0888420-mRNA-1:exon:10667;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52890807 | 52890865 | 52890807 | ID=Msa0888420-mRNA-1:exon:10668;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52890976 | 52891107 | 52890976 | ID=Msa0888420-mRNA-1:exon:10669;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52891242 | 52891309 | 52891242 | ID=Msa0888420-mRNA-1:exon:10670;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52891403 | 52891690 | 52891403 | ID=Msa0888420-mRNA-1:exon:10671;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52891772 | 52891854 | 52891772 | ID=Msa0888420-mRNA-1:exon:10672;Parent=Msa0888420-mRNA-1 |
| chr6_1 | exon | 52891987 | 52892120 | 52891987 | ID=Msa0888420-mRNA-1:exon:10673;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52890139 | 52890288 | 52890139 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52890498 | 52890714 | 52890498 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52890807 | 52890865 | 52890807 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52890976 | 52891107 | 52890976 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52891242 | 52891309 | 52891242 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52891403 | 52891690 | 52891403 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52891772 | 52891854 | 52891772 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| chr6_1 | CDS | 52891987 | 52892120 | 52891987 | ID=Msa0888420-mRNA-1:cds;Parent=Msa0888420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
